Every paper, by date: page 94

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 94 of 200: 17 January 2025 to 10 January 2025.

Friday, 17 January 2025 (41 papers, 10 on this page)

[20833] doi:10.1523/eneuro.0287-24.2024 [paper, repository]

Exploring Relevant Features for EEG-Based Investigation of Sound Perception in Naturalistic Soundscapes.

Journal: eNeuro

Authors' code: ThorgeHaupt/RelevantFeaturesSoundPerception (no license)

Status: code verified, 38 files readable, 10 matches

[20834] doi:10.1523/eneuro.0482-23.2024 [paper, repository]

Loss of PV Interneurons in the BLA May Contribute to Altered Network and Behavioral States in Chronically Epileptic Mice.

Journal: eNeuro

Authors' code: pantelisantonoudiou/MatWAND (MIT)

Status: code verified, 10 files readable, 1 match

[20835] doi:10.3389/fnmol.2024.1518737 [paper, data]

Impact of modulating leptin sensitivity on the transcriptomic profile of adult-derived hypothalamic mouse neurons.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[20836] doi:10.3389/fphys.2024.1529426 [paper, repository]

Atrioventricular nodal reentrant tachycardia onset, sustainability, and spontaneous termination in rabbit atrioventricular node model with autonomic nervous system control.

Journal: Frontiers in physiology

Authors' code: mryzhii/rabbit-AVNRT (no license), Zenodo 14604033 (CC-BY-4.0)

Status: code verified, 14 files readable

[20837] doi:10.3390/bioengineering12010082 [paper, repository]

Biomarker Investigation Using Multiple Brain Measures from MRI Through Explainable Artificial Intelligence in Alzheimer's Disease Classification.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: fsl.fmrib.ox.ac.uk/fsl/fslwiki (no license)

Status: code verified

[20838] doi:10.3390/diagnostics15020210 [paper, data]

Depression Detection and Diagnosis Based on Electroencephalogram (EEG) Analysis: A Systematic Review.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[20839] doi:10.3390/diagnostics15020211 [paper, data]

Machine Learning-Based Alzheimer's Disease Stage Diagnosis Utilizing Blood Gene Expression and Clinical Data: A Comparative Investigation.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[20840] doi:10.7554/elife.102618 [paper, data]

Realistic mossy fiber input patterns to unipolar brush cells evoke a continuum of temporal responses comprised of components mediated by different glutamate receptors.

Journal: eLife

Status: data only, 1 dataset cited

[20841] doi:10.7554/elife.94570 [paper, data]

Prolactin-mediates a lactation-induced suppression of arcuate kisspeptin neuronal activity necessary for lactational infertility in mice.

Journal: eLife

Status: data only, 1 dataset cited

[20842] doi:10.7554/elife.95273 [paper, repository]

Unbiased identification of cell identity in dense mixed neural cultures.

Journal: eLife

Authors' code: DeVosLab/Nucleocentric-Profiling (CC-BY-NC-SA-4.0), Zenodo 14644333 (CC-BY-4.0)

Status: code verified, 56 files readable, 8 matches

Thursday, 16 January 2025 (37 papers)

[20843] doi:10.1002/trc2.70041 [paper, repository]

LD-informed deep learning for Alzheimer's gene loci detection using WGS data.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: taehojo/Deep-Block (no license)

Status: code verified, 2 files readable, 1 match

[20844] doi:10.1016/j.dcn.2025.101512 [paper, repository]

Interpretation of individual differences in computational neuroscience using a latent input approach.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 7shmn (no license)

Status: code verified, 11 files readable, 1 match

[20845] doi:10.1016/j.heliyon.2025.e42052 [paper]

Discovery of mutated oncodriver genes associated with glioblastoma originated from stem cells of subventricular zone through whole exome sequence profile analysis, and drug repurposing.

Journal: Heliyon

Status: data only

[20846] doi:10.1016/j.isci.2025.111820 [paper, repository]

Transcriptomic characterization of human lateral septum neurons reveals conserved and divergent marker genes across species.

Journal: iScience

Authors' code: LieberInstitute/ls_molecular-profiling (no license), Zenodo 13799049 (CC-BY-4.0)

Status: code verified, 45 files readable, 16 matches

[20847] doi:10.1016/j.mex.2025.103175 [paper, repository]

Quantitative assessment of brain metabolism in mice using non-contrast MRI at 11.7T.

Journal: MethodsX

Authors' code: zyliamwei/MouseCMRO2 (MIT)

Status: code verified, 2 files readable

[20848] doi:10.1016/j.nicl.2025.103736 [paper, repository]

Probing Autism and ADHD subtypes using cortical signatures of the T1w/T2w-ratio and morphometry.

Journal: NeuroImage. Clinical

Authors' code: OSF dfvk9 (no license)

Status: code verified, 2 files readable, 9 matches

[20849] doi:10.1016/j.stemcr.2024.102393 [paper]

Transplantation of genome-edited retinal organoids restores some fundamental physiological functions coordinated with severely degenerated host retinas.

Journal: Stem cell reports

Status: code on request

[20850] doi:10.1021/acs.jmedchem.4c02659 [paper, data]

Network-Based Drug Optimization toward the Treatment of Parkinson's Disease: NRF2, MAO-B, Oxidative Stress, and Chronic Neuroinflammation.

Journal: Journal of medicinal chemistry

Status: data only, 3 datasets cited

[20851] doi:10.1038/s41467-025-55830-0 [paper, repository]

Pregnancy entails a U-shaped trajectory in human brain structure linked to hormones and maternal attachment.

Journal: Nature communications

Authors' code: URNC-Lab/UShape-Pregnancy (no license), Zenodo 14361671 (CC-BY-4.0)

Status: code verified, 425 files readable, 13 matches

[20852] doi:10.1038/s41467-025-56092-6 [paper, repository]

Incomplete remyelination via therapeutically enhanced oligodendrogenesis is sufficient to recover visual cortical function.

Journal: Nature communications

Authors' code: denmanlab/remyelination (GPL-3.0)

Status: code verified, 4 files readable

[20853] doi:10.1038/s41467-025-56124-1 [paper, repository]

The Human Microglia Atlas (HuMicA) unravels changes in disease-associated microglia subsets across neurodegenerative conditions.

Journal: Nature communications

Authors' code: RicardoMartins-Ferreira/HuMicA (no license), ricardomartins-ferreira.github.io/humica (no license), Zenodo 14539369 (CC-BY-4.0)

Status: code verified, 28 files readable

[20854] doi:10.1038/s41537-025-00553-w [paper]

Altered brain dynamics of facial emotion processing in schizophrenia: a combined EEG/fMRI study.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[20855] doi:10.1038/s41539-024-00292-0 [paper, data]

Effects of described demonstrator ability on brain and behavior when learning from others.

Journal: NPJ science of learning

Status: code on request, 2 datasets cited

[20856] doi:10.1038/s41598-025-86040-9 [paper, data]

EEG-based functional and effective connectivity patterns during emotional episodes using graph theoretical analysis.

Journal: Scientific reports

Status: data only, 2 datasets cited

[20857] doi:10.1038/s42003-025-07498-x [paper, repository]

Aging disrupts the link between network centrality and functional properties of prefrontal neurons during memory-guided behavior.

Journal: Communications biology

Authors' code: tsukasar/aging_centrality_code (no license)

Status: code verified, 24 files readable, 5 matches

[20858] doi:10.1073/pnas.2316745122 [paper, data]

Random noise promotes slow heterogeneous synaptic dynamics important for robust working memory computation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20859] doi:10.1093/braincomms/fcaf017 [paper, repository]

Brain microstructure alterations in subjective cognitive decline: a multi-component T2 relaxometry study.

Journal: Brain communications

Authors' code: ejcanalesr/multicomponent-T2-toolbox (no license)

Status: code verified, 29 files readable, 4 matches

[20860] doi:10.1093/braincomms/fcaf021 [paper, repository]

Theta and beta power in the subthalamic nucleus responds to conflict across subregions and hemispheres.

Journal: Brain communications

Authors' code: UofL-HCN-Lab/STN-DBS (no license)

Status: code verified, 24 files readable, 1 match

[20861] doi:10.1111/acel.14477 [paper, repository]

Age-Trajectories of Higher-Order Diffusion Properties of Major Brain Metabolites in Cerebral and Cerebellar Gray Matter Using In Vivo Diffusion-Weighted MR Spectroscopy at 3T.

Journal: Aging cell

Authors' code: kdrsimsek/aging_dMRS_project (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[20862] doi:10.1117/1.nph.12.s1.s14605 [paper]

Seizure network characterization by functional connectivity mapping and manipulation.

Journal: Neurophotonics

Status: code on request

[20863] doi:10.1136/jnnp-2024-333690 [paper, data]

Spinal cord motor neuron phenotypes and polygenic risk scores in sporadic amyotrophic lateral sclerosis: deciphering the disease pathology and therapeutic potential of ropinirole hydrochloride.

Journal: Journal of neurology, neurosurgery, and psychiatry

Status: data only, 1 dataset cited

[20864] doi:10.1159/000543577 [paper, data]

A Case of Concomitant Acute Zonal Occult Outer Retinopathy and Secondary Nonparaneoplastic Autoimmune Retinopathy.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[20865] doi:10.1162/imag_a_00429 [paper, repository]

Utilizing tACS to enhance memory confidence and EEG to predict individual differences in brain stimulation efficacy.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF cwh6a (no license)

Status: empty repository

[20866] doi:10.1186/s10020-025-01064-1 [paper, data]

Nootkatone inhibits the progression of glioblastoma by activating the ATF4-CHOP-CHAC1 pathway.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 1 dataset cited

[20867] doi:10.1186/s12877-025-05676-4 [paper, repository]

Brain computer interfaces for cognitive enhancement in older people - challenges and applications: a systematic review.

Journal: BMC geriatrics

Authors' code: OSF t69hd (no license)

Status: code found, still to be checked

[20868] doi:10.1186/s12974-024-03328-9 [paper, data]

Satellite microglia: marker of traumatic brain injury and regulator of neuronal excitability.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[20869] doi:10.1186/s13195-024-01662-x [paper, data]

Timing of risk factors, prodromal features, and comorbidities of dementia from a large health claims case-control study.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

[20870] doi:10.1186/s40478-025-01924-1 [paper, data]

Transcriptome analysis of novel B16 melanoma metastatic variants generated by serial intracarotid artery injection.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[20871] doi:10.1242/dev.202703 [paper, repository]

Examining the NEUROG2 lineage and associated gene expression in human cortical organoids.

Journal: Development (Cambridge, England)

Authors' code: linnarsson-lab/developing-human-brain (BSD-2-Clause)

Status: code verified, 7 files readable

[20872] doi:10.1371/journal.pbio.3002964 [paper, repository]

Spontaneous slow cortical potentials and brain oscillations independently influence conscious visual perception.

Journal: PLoS biology

Authors' code: Zenodo 14236766 (CC-BY-4.0), biyuhelab/plosbiol_koenig2024 (no license)

Status: code verified, 102 files readable, 15 matches

[20873] doi:10.1371/journal.pone.0311942 [paper, data]

Parallel convolutional neural network and empirical mode decomposition for high accuracy in motor imagery EEG signal classification.

Journal: PloS one

Status: data only, 1 dataset cited

[20874] doi:10.1523/eneuro.0100-24.2024 [paper, repository]

Applied Motor Noise Affects Specific Learning Mechanisms during Short-Term Adaptation to Novel Movement Dynamics.

Journal: eNeuro

Authors' code: OSF cktnw (no license)

Status: code verified, 24 files readable, 6 matches

[20875] doi:10.1523/eneuro.0157-24.2024 [paper, repository]

A New Perspective in Epileptic Seizure Classification: Applying the Taxonomy of Seizure Dynamotypes to Noninvasive EEG and Examining Dynamical Changes across Sleep Stages.

Journal: eNeuro

Authors' code: miriamguen/miriamguen-surface_eeg_seizure_analysis (GPL-2.0)

Status: code verified, 30 files readable, 18 matches

[20876] doi:10.3390/e27010076 [paper, data]

Statistical Complexity Analysis of Sleep Stages.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

[20877] doi:10.3390/nu17020303 [paper]

Associations of Maternal Prenatal Zinc Consumption with Infant Brain Tissue Organization and Neurodevelopmental Outcomes.

Journal: Nutrients

Status: code on request

[20878] doi:10.3390/s25020494 [paper]

EEG-to-EEG: Scalp-to-Intracranial EEG Translation Using a Combination of Variational Autoencoder and Generative Adversarial Networks.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[20879] doi:10.7554/elife.99696 [paper, repository]

Encoding of cerebellar dentate neuron activity during visual attention in rhesus macaques.

Journal: eLife

Authors' code: sakoay/ErasmusAttn_2020 (CC-BY-4.0)

Status: code verified, 99 files readable, 11 matches

Wednesday, 15 January 2025 (48 papers)

[20880] doi:10.1002/fsn3.4767 [paper, data]

Long-Term Creatine Supplementation Improves Cognitive and Hippocampal Structural Plasticity Impairments in a D-Gal-Induced Aging Model via Increasing CK-BB Activity in the Brain.

Journal: Food science & nutrition

Status: data only, 1 dataset cited

[20881] doi:10.1007/s00415-024-12877-1 [paper, repository]

Retrospective discrimination of PNES and epileptic seizure types using blood RNA signatures.

Journal: Journal of neurology

Authors' code: rob-meller (no license)

Status: code verified

[20882] doi:10.1007/s12021-024-09697-z [paper, repository]

Patch-Wise Deep Learning Method for Intracranial Stenosis and Aneurysm Detection-the Tromsø Study.

Journal: Neuroinformatics

Authors' code: LucaBernecker/Aneu_Steno_Patch_wise (no license)

Status: code verified, 2 files readable

[20883] doi:10.1016/j.celrep.2024.115213 [paper, repository]

Coordinated neuron-specific splicing events restrict nucleosome engagement of the LSD1 histone demethylase complex.

Journal: Cell reports

Authors' code: umich-iwase-lab/2024_PHF21A-n (no license)

Status: code verified, 14 files readable, 14 matches

[20884] doi:10.1016/j.celrep.2024.115217 [paper, data]

Luminance invariant encoding in mouse primary visual cortex.

Journal: Cell reports

Status: code on request, 1 dataset cited

[20885] doi:10.1016/j.celrep.2024.115218 [paper, repository]

Lack of context modulation in human single neuron responses in the medial temporal lobe.

Journal: Cell reports

Authors' code: csn-le/wave_clus (no license)

Status: code verified, 59 files readable

[20886] doi:10.1016/j.cub.2024.12.010 [paper, repository]

Subsets of extraocular motoneurons produce kinematically distinct saccades during hunting and exploration.

Journal: Current biology : CB

Authors' code: knossos-project/knossos (GPL-2.0), data.mendeley.com/datasets/6dtxb5zvnj (no license)

Status: code verified, 181 files readable

[20887] doi:10.1038/s41467-024-55035-x [paper, repository]

Photoreceptor metabolic window unveils eye-body interactions.

Journal: Nature communications

Authors' code: Zenodo 14271713 (CC-BY-4.0), zocskl/pmw-eye-body-interaction (no license)

Status: code verified, 4 files readable, 6 matches

[20888] doi:10.1038/s41467-024-55475-5 [paper, repository]

Neuronal segmentation in cephalopod arms.

Journal: Nature communications

Authors' code: olsoncs/Neuronal-Segmentation-Cephalopod-Arms (no license), Zenodo 14064124 (CC-BY-4.0)

Status: code verified, 20 files readable, 2 matches

[20889] doi:10.1038/s41467-024-55701-0 [paper]

Refreshable memristor via dynamic allocation of ferro-ionic phase for neural reuse.

Journal: Nature communications

Status: code on request

[20890] doi:10.1038/s41467-024-55704-x [paper, repository]

Long-term memory plasticity in a decade-long connectivity study post anterior temporal lobe resection.

Journal: Nature communications

Authors' code: marine-fleury/memory-plasticity (no license), Zenodo 14188536 (CC-BY-4.0)

Status: code verified, 2 files readable, 4 matches

[20891] doi:10.1038/s41467-025-56058-8 [paper, repository]

Cortical arealization of interneurons defines shared and distinct molecular programs in developing human and macaque brains.

Journal: Nature communications

Authors' code: lmfeng/mammal_inn_migration (no license)

Status: code verified, 8 files readable, 15 matches

[20892] doi:10.1038/s41467-025-56059-7 [paper, data]

Morphological and functional convergence of visual projection neurons from diverse neurogenic origins in Drosophila.

Journal: Nature communications

Status: data only, 1 dataset cited

[20893] doi:10.1038/s41467-025-56081-9 [paper, repository]

Syntalos: a software for precise synchronization of simultaneous multi-modal data acquisition and closed-loop interventions.

Journal: Nature communications

Authors' code: syntalos/syntalos (no license), bothlab/labrstim (GPL-3.0), bothlab/maze-hardware (other), Zenodo 14179869 (CC-BY-4.0), bothlab/pomidaq (LGPL-3.0), syntalos/edlio (LGPL-3.0), syntalos/timing-validation (LGPL-2.1), Zenodo 14207425 (CC-BY-4.0), Zenodo 8225049 (lgpl-3.0-or-later), Zenodo 14179270 (lgpl-3.0-or-later), Zenodo 14179968 (GPL-3.0), Zenodo 14166560 (cern-ohl-w-2.0)

Status: code verified, 1,683 files readable, 5 matches

[20894] doi:10.1038/s41467-025-56097-1 [paper, data]

Microglial NLRP3-gasdermin D activation impairs blood-brain barrier integrity through interleukin-1β-independent neutrophil chemotaxis upon peripheral inflammation in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[20895] doi:10.1038/s41531-024-00867-z [paper, data]

Motor cortical neuronal hyperexcitability associated with α-synuclein aggregation.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[20896] doi:10.1038/s41586-024-08361-5 [paper, data]

Specification of claustro-amygdalar and palaeocortical neurons and circuits.

Journal: Nature

Status: data only, 1 dataset cited

[20897] doi:10.1038/s41597-024-04265-1 [paper, data]

A human single-neuron dataset for object recognition.

Journal: Scientific data

Status: data only, 1 dataset cited

[20898] doi:10.1038/s41598-024-84325-z [paper]

Developing a brain inspired multilobar neural networks architecture for rapidly and accurately estimating concrete compressive strength.

Journal: Scientific reports

Status: code on request

[20899] doi:10.1038/s42003-025-07470-9 [paper, repository]

Dynamic switching between brain networks predicts creative ability.

Journal: Communications biology

Authors' code: OSF 83arw (no license)

Status: code verified, 9 files readable, 8 matches

[20900] doi:10.1038/s42003-025-07499-w [paper, repository]

Brain-derived tau oligomer polymorphs: distinct aggregations, stability profiles, and biological activities.

Journal: Communications biology

Authors' code: ncbi.nlm.nih.gov/geo/query (no license)

Status: code verified

[20901] doi:10.1038/s42255-024-01196-4 [paper, data]

Autophagy regulator ATG5 preserves cerebellar function by safeguarding its glycolytic activity.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[20902] doi:10.1038/s42256-024-00956-x [paper, repository]

The design space of E(3)-equivariant atom-centred interatomic potentials.

Journal: Nature machine intelligence

Authors' code: Zenodo 14013500 (CC-BY-4.0), Zenodo 14013469 (CC-BY-4.0), Zenodo 14052468 (CC-BY-4.0), ilyes319/nequip (MIT)

Status: code verified, 284 files readable, 4 matches

[20903] doi:10.1038/s43856-025-00736-7 [paper, repository]

Revealing excitation-inhibition imbalance in Alzheimer's disease using multiscale neural model inversion of resting-state functional MRI.

Journal: Communications medicine

Authors' code: Guoshi-Li/MNMI_AD (no license), Zenodo 14523076 (CC-BY-4.0)

Status: code verified, 30 files readable, 14 matches

[20904] doi:10.1038/s44318-024-00343-7 [paper, data]

The microcephaly-associated transcriptional regulator AUTS2 cooperates with Polycomb complex PRC2 to produce upper-layer neurons in mice.

Journal: The EMBO journal

Status: code on request, 2 datasets cited

[20905] doi:10.1073/pnas.2410955121 [paper, repository]

A distributed subcortical circuit linked to instrumental information-seeking about threat.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: htrier/Trier_et_al_2024_code (BSD-3-Clause)

Status: code verified, 41 files readable, 4 matches

[20906] doi:10.1073/pnas.2412717122 [paper, data]

CFTR dictates monocyte adhesion by facilitating integrin clustering but not activation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20907] doi:10.1093/pnasnexus/pgaf009 [paper, data]

Control of cortical slow oscillations and epileptiform discharges with photoswitchable type 1 muscarinic ligands.

Journal: PNAS nexus

Status: data only, 2 datasets cited

[20908] doi:10.1098/rsbl.2024.0527 [paper, repository]

Transient cognitive impacts of oxygen deprivation caused by catch-and-release angling.

Journal: Biology letters

Authors' code: doi:10.6084/m9.figshare.c.7585017 (no license), Zenodo 14025282 (MIT)

Status: code verified, 1 file readable, 2 matches

[20909] doi:10.1113/jp286631 [paper]

In vivo calcium imaging reveals directional sensitivity of C-low threshold mechanoreceptors.

Journal: The Journal of physiology

Status: code on request

[20910] doi:10.1126/sciadv.adl5602 [paper, repository]

Prior knowledge changes initial sensory processing in the human spinal cord.

Journal: Science advances

Authors' code: Zenodo 8348275 (CC-BY-4.0)

Status: code verified, 32 files readable, 9 matches

[20911] doi:10.1126/sciadv.adp9587 [paper, repository]

Impact of developmental temperature on neural growth, connectivity, and function.

Journal: Science advances

Authors' code: gitlab.rlp.net/mrtlllab/zuefle_batista_etal_2024 (no license), Zenodo 14203758 (CC-BY-4.0)

Status: code verified, 46 files readable, 4 matches

[20912] doi:10.1126/sciadv.adr7008 [paper, repository]

Transient interactions between the fuzzy coat and the cross-β core of brain-derived Aβ42 filaments.

Journal: Science advances

Authors' code: Zenodo 14354380 (CC-BY-4.0)

Status: code verified

[20913] doi:10.1162/imag_a_00431 [paper, repository]

Dose-response of tDCS effects on motor learning and cortical excitability: A preregistered study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF gyfae (no license)

Status: code verified, 29 files readable, 14 matches

[20914] doi:10.1162/imag_a_00432 [paper, repository]

The neural basis of event segmentation: Stable features in the environment are reflected by neural states.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: psychoinformatics-de/studyforrest-data-annotations (CC0-1.0), psychoinformatics-de/studyforrest-data-confoundsannotation (no license), dynac-lab/stable-features-reflected-in-neural-states (no license)

Status: code verified, 50 files readable, 8 matches

[20915] doi:10.1523/eneuro.0363-24.2024 [paper, repository]

Fxr1 Deletion from Cortical Parvalbumin Interneurons Modifies Their Excitatory Synaptic Responses.

Journal: eNeuro

Authors' code: ksscheuer/FXR1 (no license), Zenodo 14342804 (CC-BY-4.0), ksscheuer/Inter_intra_laminar (no license), Zenodo 11106962 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[20916] doi:10.3389/fnbot.2024.1502560 [paper, repository]

A portable EEG signal acquisition system and a limited-electrode channel classification network for SSVEP.

Journal: Frontiers in neurorobotics

Authors' code: chiwuan6/SEMSCS (no license)

Status: dead link

[20917] doi:10.3389/fncom.2024.1462110 [paper, repository]

Global remapping emerges as the mechanism for renewal of context-dependent behavior in a reinforcement learning model.

Journal: Frontiers in computational neuroscience

Authors' code: sencheng/CoBeL-RL (GPL-3.0)

Status: code verified, 105 files readable, 3 matches

[20918] doi:10.3389/fphar.2024.1508696 [paper, data]

Pharmacokinetics of 7,8-dihydroxyflavone in neonatal mice with hypoxia-ischemia related brain injury.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[20919] doi:10.3389/fpsyg.2024.1512262 [paper, repository]

Evidence for a shared cognitive mechanism underlying relative rhythmic and melodic perception.

Journal: Frontiers in psychology

Authors' code: phaidra.univie.ac.at/detail/o:2098523 (no license)

Status: code verified

[20920] doi:10.3390/antiox14010096 [paper, repository]

Ferroptosis Transcriptional Regulation and Prognostic Impact in Medulloblastoma Subtypes Revealed by RNA-Seq.

Journal: Antioxidants (Basel, Switzerland)

Authors' code: cdesterke/scriptsForFerroptosisMedulloblastoma (no license)

Status: code verified, 8 files readable, 5 matches

[20921] doi:10.3390/ijms26020676 [paper, repository]

Long Non-Coding RNA LOC113219358 Regulates Immune Responses in <i>Apis mellifera</i> Through Protein Interactions.

Journal: International journal of molecular sciences

Authors' code: www-bioinfo-org/CNCI (GPL-2.0)

Status: code verified, 9 files readable

[20922] doi:10.3390/insects16010084 [paper, data]

Differential Coding of Fruit, Leaf, and Microbial Odours in the Brains of <i>Drosophila suzukii</i> and <i>Drosophila melanogaster</i>.

Journal: Insects

Status: data only, 1 dataset cited

[20923] doi:10.3390/jcm14020529 [paper, data]

EEG Abnormalities and Phenotypic Correlates in Preschoolers with Autism Spectrum Disorder: A Single-Center Study.

Journal: Journal of clinical medicine

Status: data only, 2 datasets cited

[20924] doi:10.3390/molecules30020333 [paper, data]

Anticonvulsant Effects of Synthetic <i>N</i>-(3-Methoxybenzyl)oleamide and <i>N</i>-(3-Methoxybenzyl)linoleamide Macamides: An In Silico and In Vivo Study.

Journal: Molecules (Basel, Switzerland)

Status: data only, 2 datasets cited

[20925] doi:10.3758/s13415-024-01240-6 [paper, repository]

The role of spatial processing in verbal serial order working memory.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 7sjum (no license)

Status: code found, still to be checked

[20926] doi:10.5334/joc.423 [paper, data]

It's Hard to Prepare for Task Novelty: Cueing the Novelty of Upcoming Tasks Does Not Facilitate Task Performance.

Journal: Journal of cognition

Status: data only, 1 dataset cited

[20927] doi:10.7554/elife.96287 [paper, repository]

Complementary cognitive roles for D2-MSNs and D1-MSNs during interval timing.

Journal: eLife

Authors' code: narayanan.lab.uiowa.edu/article/datasets (no license), nandakumar-narayanan/https-elifesciences.org-reviewed-preprints-96287eLife (BSD-3-Clause)

Status: code verified, 114 files readable, 13 matches

Tuesday, 14 January 2025 (35 papers)

[20928] doi:10.1002/alz.14512 [paper]

Unraveling the transcriptomic landscape of brain vascular cells in dementia: A systematic review.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[20929] doi:10.1007/s00062-024-01490-4 [paper, repository]

Deep-Learning-based Automated Identification of Ventriculoperitoneal-Shunt Valve Models from Skull X-rays.

Journal: Clinical neuroradiology

Authors' code: pydicom/pydicom (MIT), AInII-Lab/vps-dl (MIT)

Status: code verified, 181 files readable, 4 matches

[20930] doi:10.1007/s12021-024-09706-1 [paper, data]

Large Scale in vivo Acquisition, Segmentation and 3D Reconstruction of Cortical Vasculature using μ Doppler Ultrasound Imaging.

Journal: Neuroinformatics

Status: data only, 1 dataset cited

[20931] doi:10.1016/j.cell.2024.12.002 [paper, repository]

Trans-ancestry genome-wide study of depression identifies 697 associations implicating cell types and pharmacotherapies.

Journal: Cell

Authors' code: psychiatric-genomics-consortium/mdd-wave3-meta (MIT)

Status: code verified, 221 files readable, 25 matches

[20932] doi:10.1016/j.celrep.2024.115205 [paper, repository]

Opposing roles of p38α-mediated phosphorylation and PRMT1-mediated arginine methylation in driving TDP-43 proteinopathy.

Journal: Cell reports

Authors' code: Zenodo 13963929 (CC-BY-4.0)

Status: code verified, 1 file readable

[20933] doi:10.1016/j.celrep.2024.115208 [paper, repository]

Coordination and persistence of aggressive visual communication in Siamese fighting fish.

Journal: Cell reports

Authors' code: doi:10.5061/dryad.7wm37pw2w (no license), Zenodo 13913241 (MIT), Zenodo 13913240 (MIT)

Status: code verified, 14 files readable, 3 matches

[20934] doi:10.1016/j.nbd.2025.106804 [paper, data]

Phosphorylated-tau associates with HSV-1 chromatin and correlates with nuclear speckles decondensation in low-density host chromatin regions.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[20935] doi:10.1038/s41419-024-07328-8 [paper, data]

The TRPV1-PKM2-SREBP1 axis maintains microglial lipid homeostasis in Alzheimer's disease.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[20936] doi:10.1038/s41467-024-55571-6 [paper, repository]

Intelligent in-cell electrophysiology: Reconstructing intracellular action potentials using a physics-informed deep learning model trained on nanoelectrode array recordings.

Journal: Nature communications

Authors' code: Bionelab/Reconstructing-intracellular-action-potentials-from-cardiac-extracellular-waveforms (MIT)

Status: code verified, 18 files readable, 3 matches

[20937] doi:10.1038/s41467-025-55833-x [paper, repository]

Coordinated representations for naturalistic memory encoding and retrieval in hippocampal neural subspaces.

Journal: Nature communications

Authors' code: somvid/Hippocampal-subspaces (no license)

Status: code verified, 7 files readable, 3 matches

[20938] doi:10.1038/s41467-025-55919-6 [paper, repository]

Genetic predisposition to altered blood cell homeostasis is associated with glioma risk and survival.

Journal: Nature communications

Authors' code: MRCIEU/TwoSampleMR (other), jrs95/hyprcoloc (GPL-3.0), PhanstielLab/plotgardener (other)

Status: code verified, 186 files readable, 7 matches

[20939] doi:10.1038/s41591-024-03466-w [paper, repository]

In vivo base editing extends lifespan of a humanized mouse model of prion disease.

Journal: Nature medicine

Authors' code: ericminikel/base_editing (CC-BY-4.0)

Status: code verified, 16 files readable, 1 match

[20940] doi:10.1038/s41597-025-04383-4 [paper, repository]

A multi-modal neuroimaging data release for Meige Syndrome and Facial Paralysis Research.

Journal: Scientific data

Authors' code: zuoxinian/CCS (GPL-2.0)

Status: code verified, 732 files readable, 18 matches

[20941] doi:10.1038/s41598-024-84771-9 [paper, data]

Network pharmacology combined with experimental verification for exploring the potential mechanism of phellodendrine against depression.

Journal: Scientific reports

Status: data only, 4 datasets cited

[20942] doi:10.1038/s42003-024-07448-z [paper, repository]

Linking heartbeats with the cortical network dynamics involved in self-social touch distinction.

Journal: Communications biology

Authors' code: diegocandiar/heart_brain_conn (no license), diegocandiar/robust_hrv (no license), diegocandiar/eeg_cluster_wilcoxon (no license)

Status: code verified, 18 files readable, 3 matches

[20943] doi:10.1038/s42003-025-07481-6 [paper, repository]

Integrating genetics and transcriptomics to characterize shared mechanisms in digestive diseases and psychiatric disorders.

Journal: Communications biology

Authors' code: bulik/ldsc (GPL-3.0), JonJala/mtag (GPL-3.0), huwenboshi/hess (GPL-3.0), TiffanyAmariuta/TCSC (GPL-3.0), jokergoo/ComplexHeatmap (other)

Status: code verified, 173 files readable, 7 matches

[20944] doi:10.1038/s43856-024-00701-w [paper, repository]

Deep learning empowered sensor fusion boosts infant movement classification.

Journal: Communications medicine

Authors' code: Zenodo 14046527 (CC-BY-4.0)

Status: code verified, 17 files readable, 4 matches

[20945] doi:10.1073/pnas.2405981122 [paper, data]

The chromatin remodeler ADNP regulates neurodevelopmental disorder risk genes and neocortical neurogenesis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[20946] doi:10.1073/pnas.2422083122 [paper, repository]

Specialization of the human hippocampal long axis revisited.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 2 matches

[20947] doi:10.1172/jci171077 [paper, data]

PDGFRα inhibition reduces myofibroblast expansion in the fibrotic rim and enhances recovery after ischemic stroke.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[20948] doi:10.1186/s12920-025-02084-w [paper, repository]

Evaluation of a biomarker for amyotrophic lateral sclerosis derived from a hypomethylated DNA signature of human motor neurons.

Journal: BMC medical genomics

Authors' code: broadinstitute/ABC-Enhancer-Gene-Prediction (MIT), bulik/ldsc (GPL-3.0)

Status: code verified, 51 files readable, 3 matches

[20949] doi:10.1186/s12974-025-03336-3 [paper, data]

The interaction of tPA with NMDAR1 drives neuroinflammation and neurodegeneration in α-synuclein-mediated neurotoxicity.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[20950] doi:10.1186/s13195-024-01661-y [paper, data]

Exome sequencing reveals a rare damaging variant in GRIN2C in familial late-onset Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[20951] doi:10.1186/s40635-024-00710-y [paper, data]

Translational approach to assess brain injury after cardiac arrest in preclinical models: a narrative review.

Journal: Intensive care medicine experimental

Status: data only, 1 dataset cited

[20952] doi:10.1186/s40708-024-00247-6 [paper, repository]

Blockchain-enabled digital twin system for brain stroke prediction.

Journal: Brain informatics

Authors' code: vupadrista/Blockchain-Enabled-Digital-Twin-System-for-Brain-Stroke-Prediction (no license)

Status: code verified, 2 files readable

[20953] doi:10.1371/journal.pbio.3002954 [paper, repository]

Dorsal hippocampus represents locations to avoid as well as locations to approach during approach-avoidance conflict.

Journal: PLoS biology

Authors' code: OSF v6jt9 (no license)

Status: code verified, 45 files readable, 16 matches

[20954] doi:10.1371/journal.pcbi.1012234 [paper, repository]

Mechanisms for dysregulation of excitatory-inhibitory balance underlying allodynia in dorsal horn neural subcircuits.

Journal: PLoS computational biology

Authors' code: aaginsb/new-sensitivity-analysis-for-neural-circuits (MIT)

Status: code verified, 13 files readable, 5 matches

[20955] doi:10.1371/journal.pone.0310367 [paper, repository]

CBGTPy: An extensible cortico-basal ganglia-thalamic framework for modeling biological decision making.

Journal: PloS one

Authors' code: CoAxLab/CBGTPy (no license)

Status: code verified, 33 files readable, 29 matches

[20956] doi:10.1371/journal.pone.0316320 [paper, data]

Flexibility in choosing decision policies in gathering discrete evidence over time.

Journal: PloS one

Status: data only, 1 dataset cited

[20957] doi:10.1503/jpn.240087 [paper, data]

Polygenic risk for depression and resting-state functional connectivity of subgenual anterior cingulate cortex in young adults.

Journal: Journal of psychiatry & neuroscience : JPN

Status: data only, 1 dataset cited

[20958] doi:10.3389/fnins.2024.1415257 [paper, repository]

MEPFeatX-automated feature extraction of motor-evoked potentials in transcranial magnetic stimulation.

Journal: Frontiers in neuroscience

Authors' code: NeuromodulationUEF/MEPFeatX (BSD-3-Clause)

Status: code verified, 26 files readable, 2 matches

[20959] doi:10.3389/fphar.2024.1525753 [paper, data]

Therapeutic potential of rutin in premenstrual depression: evidence from <i>in vivo</i> and <i>in vitro</i> studies.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[20960] doi:10.3390/biomimetics10010051 [paper, repository]

A Bio-Inspired Visual Neural Model for Robustly and Steadily Detecting Motion Directions of Translating Objects Against Variable Contrast in the Figure-Ground and Noise Interference.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: szhanghh/Bio-inspired-model (no license)

Status: code verified, 1 file readable

[20961] doi:10.3390/brainsci15010068 [paper]

Diagnosis of Cognitive and Mental Disorders: A New Approach Based on Spectral-Spatiotemporal Analysis and Local Graph Structures of Electroencephalogram Signals.

Journal: Brain sciences

Status: code on request

[20962] doi:10.3390/jpm15010027 [paper, data]

A Novel CNN-Based Framework for Alzheimer's Disease Detection Using EEG Spectrogram Representations.

Journal: Journal of personalized medicine

Status: data only, 2 datasets cited

Monday, 13 January 2025 (40 papers)

[20963] doi:10.1007/s00429-024-02886-1 [paper, repository]

Basal forebrain innervation of the amygdala: an anatomical and computational exploration.

Journal: Brain structure & function

Authors' code: tjbanks/AmygdalaTheta (no license)

Status: code verified, 1,279 files readable, 7 matches

[20964] doi:10.1007/s12672-025-01792-0 [paper, data]

Integrating machine learning with mendelian randomization for unveiling causal gene networks in glioblastoma multiforme.

Journal: Discover oncology

Status: code on request, 1 dataset cited

[20965] doi:10.1016/j.heliyon.2025.e41835 [paper, data]

Context aware machine learning techniques for brain tumor classification and detection - A review.

Journal: Heliyon

Status: data only, 1 dataset cited

[20966] doi:10.1016/j.xcrm.2024.101914 [paper, repository]

High cellular plasticity state of medulloblastoma local recurrence and distant dissemination.

Journal: Cell reports. Medicine

Authors' code: theislab/paga (BSD-3-Clause), dylkot/cNMF (MIT)

Status: code verified, 41 files readable, 2 matches

[20967] doi:10.1016/j.xcrm.2024.101918 [paper, repository]

Single-molecule systems for the detection and monitoring of plasma-circulating nucleosomes and oncoproteins in diffuse midline glioma.

Journal: Cell reports. Medicine

Authors' code: Zenodo 14242990 (CC-BY-4.0)

Status: code verified, 2 files readable

[20968] doi:10.1038/s41467-024-55706-9 [paper, repository]

Genome-wide association study unravels mechanisms of brain glymphatic activity.

Journal: Nature communications

Authors' code: r-project.org (no license), cog-genomics.org/plink (no license), cnsgenomics.com/software/gcta (no license), mathgen.stats.ox.ac.uk/impute/impute_v2.html (no license), imputationserver.sph.umich.edu (no license), hail.is (no license), saigegit.github.io/saige-doc (no license), precimed/pleiofdr (GPL-3.0), bulik/ldsc (GPL-3.0), h8264/ALPS-index (no license), h8264/ALPS_GWAS (no license)

Status: code verified, 81 files readable, 3 matches

[20969] doi:10.1038/s41598-024-82817-6 [paper, data]

Coregistration of eye movements and EEG reveals frequency effects of words and their constituent characters in natural silent Chinese reading.

Journal: Scientific reports

Status: data only, 1 dataset cited

[20970] doi:10.1038/s41598-024-83306-6 [paper]

Probabilistic nested model selection in pharmacokinetic analysis of DCE-MRI data in animal model of cerebral tumor.

Journal: Scientific reports

Status: code on request

[20971] doi:10.1038/s41598-024-85015-6 [paper, repository]

Eye movements follow the dynamic shifts of attention through serial order in verbal working memory.

Journal: Scientific reports

Authors' code: OSF q9mbn (no license)

Status: code verified, 1 file readable

[20972] doi:10.1038/s41598-025-85577-z [paper, repository]

The integration of self-efficacy and response-efficacy in decision making.

Journal: Scientific reports

Authors' code: delgado-lab/PerceivedControlIntegration (no license)

Status: code verified, 11 files readable

[20973] doi:10.1038/s41598-025-85914-2 [paper, repository]

Major individual and regional variations in unit entrainment by oscillations of different frequencies.

Journal: Scientific reports

Authors' code: billkarsh/SpikeGLX (BSD-3-Clause)

Status: code verified, 361 files readable

[20974] doi:10.1038/s41746-024-01347-7 [paper]

Detecting early cognitive deficits in preclinical Alzheimer's disease using a remote digital multi-day learning paradigm.

Journal: NPJ digital medicine

Status: code on request

[20975] doi:10.1038/s44318-024-00339-3 [paper, data]

Glycogen synthase GYS1 overactivation contributes to glycogen insolubility and malto-oligoglucan-associated neurodegenerative disease.

Journal: The EMBO journal

Status: data only, 2 datasets cited

[20976] doi:10.1038/s44318-024-00351-7 [paper]

E3 ubiquitin ligase CHIP facilitates cAMP and cGMP signalling cross-talk by polyubiquitinating PDE9A.

Journal: The EMBO journal

Status: data only

[20977] doi:10.1073/pnas.2421585122 [paper, repository]

Expansion of a conserved architecture drives the evolution of the primate visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: arcaro-lab/ExpansionofPrimateCortex (no license)

Status: code verified, 211 files readable, 5 matches

[20978] doi:10.1097/pr9.0000000000001233 [paper, data]

Current source density and functional connectivity extracted from resting-state electroencephalography as biomarkers for chronic low back pain.

Journal: Pain reports

Status: data only, 1 dataset cited

[20979] doi:10.1101/2025.01.13.632678 [paper, repository]

Risk preferences causally rely on parietal magnitude representations: Evidence from combined TMS-fMRI

Journal: bioRxiv (preprint)

Authors' code: braincoder-devs.github.io (no license), ruffgroup/bauer (MIT)

Status: code verified, 97 files readable

[20980] doi:10.1162/imag_a_00427 [paper]

Detectability and cortical depth dependence of stimulus-driven high-frequency BOLD oscillations in the human primary somatosensory and motor cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[20981] doi:10.1162/imag_a_00428 [paper, repository]

Differential weighting of information during aloud and silent reading: Evidence from representational similarity analysis of fMRI data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: lyambailey/Speech_Production_RSA (BSD-3-Clause)

Status: code verified, 26 files readable, 13 matches

[20982] doi:10.1162/imag_a_00439 [paper, repository]

Functional brain activations correlated with association strength and prediction error during novel symbol-speech sound learning.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF kysgn (no license)

Status: code verified, 3 files readable

[20983] doi:10.1177/17470218241308560 [paper, data]

The effect of swearing on error-related negativity as an indicator for state disinhibition.

Journal: Quarterly journal of experimental psychology (2006)

Status: data only, 1 dataset cited

[20984] doi:10.1186/s12880-024-01527-7 [paper, data]

Investigating resting-state functional connectivity changes within procedural memory network across neuropsychiatric disorders using fMRI.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[20985] doi:10.1186/s12916-024-03845-7 [paper, data]

Neighborhood environment associations with cognitive function and structural brain measures in older African Americans.

Journal: BMC medicine

Status: data only, 1 dataset cited

[20986] doi:10.1186/s12931-024-03086-5 [paper, data]

Potential drug targets for asthma identified through mendelian randomization analysis.

Journal: Respiratory research

Status: data only, 1 dataset cited

[20987] doi:10.1186/s12967-024-05916-y [paper, data]

Amantadine modulates novel macrophage phenotypes to enhance neural repair following spinal cord injury.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[20988] doi:10.1186/s13024-025-00796-2 [paper, data]

Upregulated astrocyte HDAC7 induces Alzheimer-like tau pathologies via deacetylating transcription factor-EB and inhibiting lysosome biogenesis.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[20989] doi:10.1186/s13229-025-00639-3 [paper, data]

Suboptimal but intact integration of Bayesian components during perceptual decision-making in autism.

Journal: Molecular autism

Status: data only, 1 dataset cited

[20990] doi:10.1186/s41747-024-00544-z [paper, repository]

Automated characterisation of cerebral microbleeds using their size and spatial distribution on brain MRI.

Journal: European radiology experimental

Authors' code: v-sundaresan/microbleed-size-counting (MIT)

Status: code verified, 7 files readable, 1 match

[20991] doi:10.1371/journal.pbio.3002986 [paper, data]

Subregions in the ventromedial prefrontal cortex integrate threat and protective information to meta-represent safety.

Journal: PLoS biology

Status: data only, 1 dataset cited

[20992] doi:10.1371/journal.pcbi.1012683 [paper, repository]

Dialogue mechanisms between astrocytic and neuronal networks: A whole-brain modelling approach.

Journal: PLoS computational biology

Authors' code: aliobaibk/nnamm (MIT), connectomicslab/connectomemapper3 (BSD-3-Clause), gitlab.utwente.nl/m7686441/matcont (GPL-3.0), scilus/scilpy (MIT)

Status: code verified, 1,345 files readable, 6 matches

[20993] doi:10.3389/fnagi.2024.1511668 [paper, data]

Neuroinflammation mediates the progression of neonate hypoxia-ischemia brain damage to Alzheimer's disease: a bioinformatics and experimental study.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[20994] doi:10.3389/fnins.2024.1520982 [paper, repository]

MetaboLINK is a novel algorithm for unveiling cell-specific metabolic pathways in longitudinal datasets.

Journal: Frontiers in neuroscience

Authors' code: jlichtarge/pcaGLASSO (no license)

Status: code verified, 8 files readable, 2 matches

[20995] doi:10.3389/fnins.2024.1524615 [paper, data]

Comparative transcriptomic rhythms in the mouse and human prefrontal cortex.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[20996] doi:10.3389/fnins.2024.1528374 [paper]

Low-dose intranasal deferoxamine modulates memory, neuroinflammation, and the neuronal transcriptome in the streptozotocin rodent model of Alzheimer's disease.

Journal: Frontiers in neuroscience

Status: data only

[20997] doi:10.3389/fradi.2024.1433457 [paper, data]

Current state and promise of user-centered design to harness explainable AI in clinical decision-support systems for patients with CNS tumors.

Journal: Frontiers in radiology

Status: data only, 3 datasets cited

[20998] doi:10.3390/diagnostics15020168 [paper, data]

Explainable AI in Diagnostic Radiology for Neurological Disorders: A Systematic Review, and What Doctors Think About It.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[20999] doi:10.7150/thno.103629 [paper]

USP14 modulates stem-like properties, tumorigenicity, and radiotherapy resistance in glioblastoma stem cells through stabilization of MST4-phosphorylated ALKBH5.

Journal: Theranostics

Status: data only

[21000] doi:10.7554/elife.101727 [paper, repository]

Assessing the balance between excitation and inhibition in chronic pain through the aperiodic component of EEG.

Journal: eLife

Authors' code: OSF xshmy (no license), OSF qgfma (no license)

Status: code verified, 73 files readable, 21 matches

[21001] doi:10.7554/elife.96303 [paper, repository]

Geometry and dynamics of representations in a precisely balanced memory network related to olfactory cortex.

Journal: eLife

Authors' code: clairemb90/pDp-model (MIT)

Status: code verified, 6 files readable, 4 matches

[21002] doi:10.7717/peerj.18798 [paper, data]

Social presence effect in language comprehension: evidence from event-related potential (ERP) research.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 12 January 2025 (4 papers)

[21003] doi:10.1016/j.xpro.2024.103556 [paper, repository]

Protocol for live imaging of axonal transport in iPSC-derived iNeurons.

Journal: STAR protocols

Authors' code: jnirschl/kinesin-3_guedes-dias_2018 (MIT), Zenodo 2530934 (other-open)

Status: code verified, 24 files readable

[21004] doi:10.1038/s41467-025-55884-0 [paper, repository]

Neuronal dynamics of cerebellum and medial prefrontal cortex in adaptive motor timing.

Journal: Nature communications

Authors' code: ZhongRenNeuroscience/Eyeblink-TEC-DEC (no license)

Status: code verified, 1 file readable

[21005] doi:10.1093/jbmrpl/ziaf006 [paper, repository]

Spatial histomorphometry reveals that local peripheral nerves modulate but are not required for skeletal adaptation to applied load in mice.

Journal: JBMR plus

Authors' code: alecbeeve/RadialQuant (GPL-3.0)

Status: code verified, 5 files readable

[21006] doi:10.1101/2025.01.11.632388 [paper, repository]

Neural signatures of model-based and model-free reinforcement learning across prefrontal cortex and striatum

Journal: bioRxiv (preprint)

Authors' code: jamesbutler01/TwoStepExperiment (MIT)

Status: code verified, 12 files readable, 5 matches

Saturday, 11 January 2025 (16 papers)

[21007] doi:10.1007/s12021-024-09699-x [paper, repository]

"The Brain is…": A Survey of the Brain's Many Definitions.

Journal: Neuroinformatics

Authors' code: tsb46/the_brain_is (no license)

Status: code verified, 6 files readable, 5 matches

[21008] doi:10.1007/s12672-025-01786-y [paper, data]

High expression of nucleotide-binding oligomerization domain protein 1 correlates with poor prognosis and immune cell infiltration in Glioblastoma Multiforme patients.

Journal: Discover oncology

Status: data only, 1 dataset cited

[21009] doi:10.1016/j.dib.2025.111288 [paper, data]

Brain lesion MRI and co-related MRS spectroscopy dataset.

Journal: Data in brief

Status: data only, 1 dataset cited

[21010] doi:10.1016/j.xpro.2024.103566 [paper]

Protocol for microinjection of rapamycin into the zebrafish habenula.

Journal: STAR protocols

Status: code on request

[21011] doi:10.1038/s41467-025-55882-2 [paper, repository]

A membrane-targeted photoswitch restores physiological ON/OFF responses to light in the degenerate retina.

Journal: Nature communications

Authors' code: gitlab.iit.it/nbt008-public/retina-hd-mea-public (no license)

Status: empty repository, 1 file readable

[21012] doi:10.1038/s41597-024-03986-7 [paper, data]

BOston Neonatal Brain Injury Data for Hypoxic Ischemic Encephalopathy (BONBID-HIE): I. MRI and Lesion Labeling.

Journal: Scientific data

Status: data only, 1 dataset cited

[21013] doi:10.1038/s41597-024-04349-y [paper, repository]

Chromosome-scale genome assembly of three-spotted seahorse (Hippocampus trimaculatus) with a unique karyotype.

Journal: Scientific data

Authors' code: figshare 27054835 (CC-BY-4.0)

Status: code verified

[21014] doi:10.1038/s41597-025-04367-4 [paper, repository]

Monitoring of single-nucleus chromatin landscape of ischemic stroke in mouse cerebral cortex across time.

Journal: Scientific data

Authors' code: figshare 25558785 (CC-BY-4.0)

Status: code verified, 10 files readable, 14 matches

[21015] doi:10.1038/s41598-024-85058-9 [paper]

Dynamics and development of interhemispheric conflict solving in pigeons.

Journal: Scientific reports

Status: code on request

[21016] doi:10.1038/s41598-025-85788-4 [paper, repository]

A sensory neuroprosthesis enhances recovery from treadmill-induced stumbles for individuals with lower limb loss.

Journal: Scientific reports

Authors' code: Zenodo 13879472 (CC-BY-4.0)

Status: code verified, 92 files readable, 17 matches

[21017] doi:10.1038/s42003-025-07466-5 [paper, data]

Neural representation of sensorimotor features in language-motor areas during auditory and visual perception.

Journal: Communications biology

Status: data only, 1 dataset cited

[21018] doi:10.1093/braincomms/fcae418 [paper, repository]

Genomic characterization of Huntington's disease genetic modifiers informs drug target tractability.

Journal: Brain communications

Authors' code: Wright-Lab-Neurogenomics-Research/hd_mod_drug_target_analyses (no license)

Status: code verified, 3 files readable, 10 matches

[21019] doi:10.1093/braincomms/fcaf011 [paper, repository]

Quantitative susceptibility mapping is more sensitive and specific than phase imaging in detecting chronic active multiple sclerosis lesion rims: pathological validation.

Journal: Brain communications

Authors' code: pre.weill.cornell.edu/mri/pages (no license)

Status: code verified

[21020] doi:10.1186/s12967-024-06045-2 [paper]

Possible linking and treatment between Parkinson's disease and inflammatory bowel disease: a study of Mendelian randomization based on gut-brain axis.

Journal: Journal of translational medicine

Status: code on request

[21021] doi:10.1186/s12967-025-06095-0 [paper, repository]

Ferroptosis-related genes participate in the microglia-induced neuroinflammation of spinal cord injury via NF-κB signaling: evidence from integrated single-cell and spatial transcriptomic analysis.

Journal: Journal of translational medicine

Authors' code: Coolgenome/iTALK (no license), garthtarr/edgebundleR (no license)

Status: code verified, 20 files readable, 4 matches

[21022] doi:10.3390/brainsci15010060 [paper, repository]

Explainable Self-Supervised Dynamic Neuroimaging Using Time Reversal.

Journal: Brain sciences

Authors' code: zafariqballevi2/Explainable_ML_TimeReversal (no license)

Status: code verified, 12 files readable, 6 matches

Friday, 10 January 2025 (44 papers, 34 on this page)

[21023] doi:10.1002/jbio.202400513 [paper, data]

Neuronal Imaging at 8-Bit Depth to Combine High Spatial and High Temporal Resolution With Acquisition Rates Up To 40 kHz.

Journal: Journal of biophotonics

Status: data only, 2 datasets cited

[21024] doi:10.1002/jmri.29686 [paper, repository]

Semi-Supervised Learning Allows for Improved Segmentation With Reduced Annotations of Brain Metastases Using Multicenter MRI Data.

Journal: Journal of magnetic resonance imaging : JMRI

Authors' code: JonOttesen/SemiMetSeg (Apache-2.0)

Status: code verified, 31 files readable, 2 matches

[21025] doi:10.1007/s12021-024-09696-0 [paper, repository]

Computational Generation of Long-range Axonal Morphologies.

Journal: Neuroinformatics

Authors' code: Zenodo 13843537 (Apache-2.0), BlueBrain/axon-synthesis (Apache-2.0), BlueBrain/NeuroTS (Apache-2.0)

Status: code verified, 155 files readable, 6 matches

[21026] doi:10.1016/j.abrep.2025.100585 [paper, data]

Influence of binge drinking on the resting state functional connectivity of university Students: A follow-up study.

Journal: Addictive behaviors reports

Status: data only, 1 dataset cited

[21027] doi:10.1016/j.bioactmat.2024.12.031 [paper, repository]

Graphene oxide scaffolds promote functional improvements mediated by scaffold-invading axons in thoracic transected rats.

Journal: Bioactive materials

Authors' code: errhernandez/compactness (MIT)

Status: code verified, 3 files readable

[21028] doi:10.1016/j.bpr.2025.100196 [paper, data]

Toward measurements of absolute membrane potential in Bacillus subtilis using fluorescence lifetime.

Journal: Biophysical reports

Status: data only, 1 dataset cited

[21029] doi:10.1016/j.cub.2024.11.073 [paper, repository]

Prediction of future input explains lateral connectivity in primary visual cortex.

Journal: Current biology : CB

Authors' code: sebbkw/temporal_prediction_connectivity (no license)

Status: code verified, 58 files readable, 5 matches

[21030] doi:10.1016/j.dadr.2025.100318 [paper, repository]

Sex differences in normative modeling of cortical thickness in cannabis use disorder.

Journal: Drug and alcohol dependence reports

Authors' code: medicslab/NOMIS (no license)

Status: empty repository, 1 file readable

[21031] doi:10.1016/j.isci.2024.111631 [paper]

Distinct disruptions in CA1 and CA3 place cell function in Alzheimer's disease mice.

Journal: iScience

Status: code on request

[21032] doi:10.1016/j.isci.2025.111782 [paper, repository]

Differential contributions of CA3 and entorhinal cortex inputs to ripple patterns in the hippocampus.

Journal: iScience

Authors' code: genzellab/cbd (GPL-3.0)

Status: code verified, 201 files readable, 13 matches

[21033] doi:10.1016/j.isci.2025.111791 [paper, repository]

ARL13B regulates juxtaposed cilia-cilia elongation in BBSome dependent manner in &lt;i&gt;Caenorhabditis elegans&lt;/i&gt;.

Journal: iScience

Authors' code: Zenodo 14589265 (MIT), mervegulturan/ARL13B-regulates-Juxtaposed-Cilia-Cilia-Elongation-in-BBSome-dependent-manner-in-C-elegans (MIT)

Status: code verified, 4 files readable

[21034] doi:10.1016/j.isci.2025.111796 [paper, repository]

Vocal recognition of partners by female prairie voles.

Journal: iScience

Authors' code: Zenodo 14617947 (CC-BY-4.0), rcbliu/vocal-recognition-in-voles (no license)

Status: code verified, 30 files readable, 3 matches

[21035] doi:10.1016/j.jbc.2025.108173 [paper, data]

Maternal obesity alters histone modifications mediated by the interaction between EZH2 and AMPK, impairing neural differentiation in the developing embryonic brain cortex.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[21036] doi:10.1038/s41588-024-02050-9 [paper, repository]

Cell state-dependent allelic effects and contextual Mendelian randomization analysis for human brain phenotypes.

Journal: Nature genetics

Authors' code: johnsonlab-ic/singlecell-MR (no license), Zenodo 14168001 (CC-BY-4.0)

Status: code verified, 42 files readable, 12 matches

[21037] doi:10.1038/s41598-024-81315-z [paper, data]

Machine learning identified novel players in lipid metabolism, endosomal trafficking, and iron metabolism of the ALS spinal cord.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21038] doi:10.1038/s41598-024-84780-8 [paper, data]

Protection of Alzheimer's disease progression by a human-origin probiotics cocktail.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21039] doi:10.1038/s41598-025-85874-7 [paper, repository]

A hybrid explainable model based on advanced machine learning and deep learning models for classifying brain tumors using MRI images.

Journal: Scientific reports

Authors' code: hafsa-kibria/Brain_Tumor_Classification (CC-BY-4.0)

Status: code verified, 6 files readable, 3 matches

[21040] doi:10.1038/s41698-024-00792-7 [paper, repository]

In-depth inference of transcriptional regulatory networks reveals NPM1 as a therapeutic ribosomal regulator in MYC-amplified medulloblastoma.

Journal: NPJ precision oncology

Authors' code: chenhy-lab/Medulloblastoma (no license)

Status: code verified, 1 file readable

[21041] doi:10.1038/s42003-024-07427-4 [paper, repository]

The human reward system encodes the subjective value of ideas during creative thinking.

Journal: Communications biology

Authors' code: translationalneuromodeling.org/tapas (no license), smorenorodriguez/CreHack_NeuroValuation (no license)

Status: code verified, 21 files readable, 4 matches

[21042] doi:10.1038/s42003-024-07444-3 [paper, data]

Prenatal maternal stress in rats alters the epigenetic and transcriptomic landscape of the maternal-fetal interface across four generations.

Journal: Communications biology

Status: data only, 1 dataset cited

[21043] doi:10.1038/s44220-024-00354-7 [paper, repository]

Relationships of eating behaviors with psychopathology, brain maturation and genetic risk for obesity in an adolescent cohort study.

Journal: Nature. Mental health

Authors' code: mica-mni/enigma (BSD-3-Clause), getian107/PRScs (MIT), XinyangYu918/EatingBehaviours-BrainMaturation-Psychopathology-Genetics (no license)

Status: code verified, 138 files readable, 13 matches

[21044] doi:10.1093/braincomms/fcaf008 [paper, data]

Changes in neurotransmitter-related functional connectivity along the Alzheimer's disease continuum.

Journal: Brain communications

Status: data only, 1 dataset cited

[21045] doi:10.1093/braincomms/fcaf009 [paper, repository]

Amyloid-β and tau deposition in traumatic brain injury: a study of Vietnam War veterans.

Journal: Brain communications

Authors' code: OssenKoppeLab/HdeBruin_ADNI_DOD (no license)

Status: code verified, 3 files readable

[21046] doi:10.1101/2025.01.09.632099 [paper, data]

Predictive acoustical processing in human cortical layers

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[21047] doi:10.1126/sciadv.adq2616 [paper, repository]

A claudin5-binding peptide enhances the permeability of the blood-brain barrier in vitro.

Journal: Science advances

Authors' code: Zenodo 13918544 (CC-BY-4.0)

Status: code verified

[21048] doi:10.1126/sciadv.ads7297 [paper, repository]

Beyond nature, nurture, and chance: Individual agency shapes divergent learning biographies and brain connectome.

Journal: Science advances

Authors' code: networkx (no license)

Status: code verified

[21049] doi:10.1162/imag_a_00424 [paper, repository]

Representation of navigational affordances and ego-motion in the occipital place area.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 6yehp (no license)

Status: code verified, 5 files readable

[21050] doi:10.1162/imag_a_00438 [paper, repository]

Brain morphology normative modelling platform for abnormality and centile estimation: Brain MoNoCle.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: cnnp-lab/CorticalFoldingAnalysisTools (GPL-3.0)

Status: code verified, 772 files readable

[21051] doi:10.1162/nol_a_00153 [paper, data]

Intrahemispheric White Matter Asymmetries and Interhemispheric Connections Underlying the Lateralization of Language Production and Spatial Attention in Left-Handers.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[21052] doi:10.1162/nol_a_00157 [paper, repository]

Neuroimaging Findings for the Overnight Consolidation of Learned Non-native Speech Sounds.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF mtc32 (no license), pmolfese/EarleNBL2024_MTOPL (GPL-3.0)

Status: code verified, 8 files readable

[21053] doi:10.1162/nol_a_00158 [paper, repository]

Impact of COVID-19 School Closures on White Matter Plasticity in the Reading Network.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF cekp6 (no license)

Status: code verified, 2 files readable, 1 match

[21054] doi:10.1186/s11658-024-00680-9 [paper, data]

Effect of SNORD113-3/ADAR2 on glycolipid metabolism in glioblastoma via A-to-I editing of PHKA2.

Journal: Cellular & molecular biology letters

Status: data only, 2 datasets cited

[21055] doi:10.12688/f1000research.159561.1 [paper, data]

Social pain: A systematic review on interventions.

Journal: F1000Research

Status: data only, 1 dataset cited

[21056] doi:10.1371/journal.pone.0297754 [paper, repository]

Quantifying spectral information about source separation in multisource odour plumes.

Journal: PloS one

Authors' code: stootoon/fisher-plumes (no license)

Status: code verified, 16 files readable, 5 matches

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.