Every paper, by date: page 95

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 95 of 200: 10 January 2025 to 2 January 2025.

Friday, 10 January 2025 (44 papers, 10 on this page)

[21057] doi:10.1523/eneuro.0419-24.2024 [paper, data]

Interaction between Facial Expression and Color in Modulating ERP P3.

Journal: eNeuro

Status: data only, 1 dataset cited

[21058] doi:10.3389/fimmu.2024.1494806 [paper, data]

ScRNA-seq unveils the functional characteristics of glioma-associated macrophages and the regulatory effects of chlorogenic acid on the immune microenvironment-a study based on mouse models and clinical practice.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[21059] doi:10.3390/biom15010102 [paper, data]

Tetrahydrobiopterin in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome: A Friend or Foe?

Journal: Biomolecules

Status: data only, 1 dataset cited

[21060] doi:10.3390/diagnostics15020153 [paper, data]

Information Geometry and Manifold Learning: A Novel Framework for Analyzing Alzheimer's Disease MRI Data.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[21061] doi:10.3390/ijms26020550 [paper, data]

Identification of Downregulated <i>MECR</i> Gene in Parkinson's Disease Through Integrated Transcriptomic Analysis and Validation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[21062] doi:10.3892/mmr.2025.13432 [paper, data]

NGR1 reduces neuronal apoptosis through regulation of ITGA11 following subarachnoid hemorrhage.

Journal: Molecular medicine reports

Status: data only, 1 dataset cited

[21063] doi:10.7554/elife.101523 [paper, repository]

Parabrachial CGRP neurons modulate active defensive behavior under a naturalistic threat.

Journal: eLife

Authors' code: supp:PMC11798572/elife-101523-code1.zip (no license)

Status: empty repository

[21064] doi:10.7554/elife.101980 [paper, repository]

Valence and salience encoding in the central amygdala.

Journal: eLife

Authors' code: zweifellab/circular-shift (MIT), Zenodo 13972324 (MIT)

Status: code verified, 7 files readable

[21065] doi:10.7554/elife.95135 [paper, repository]

The NeuroML ecosystem for standardized multi-scale modeling in neuroscience.

Journal: eLife

Authors' code: jupyter.org (no license), OpenSourceBrain/AllenInstituteNeuroML (MIT), OpenSourceBrain/Brunel2000 (MIT), OpenSourceBrain/L5bPyrCellHayEtAl2011 (MIT), OpenSourceBrain/IzhikevichModel (BSD-3-Clause), OpenSourceBrain/BlueBrainProjectShowcase (MIT), OpenSourceBrain/PospischilEtAl2008 (MIT), OpenSourceBrain/PotjansDiesmann2014 (GPL-3.0), OpenSourceBrain/M1NetworkModel (MIT), OpenSourceBrain/SadehEtAl2017-InhibitionStabilizedNetworks (MIT), OpenSourceBrain/SmithEtAl2013-L23DendriticSpikes (MIT), OpenSourceBrain/Thalamocortical (GPL-2.0), OpenSourceBrain/BahlEtAl2012_ReducedL5PyrCell (no license), OpenSourceBrain/del-Molino2017 (no license), OpenSourceBrain/MejiasEtAl2016 (no license), SilverLabUCL/MF-GC-network-backprop-public (MIT), OpenSourceBrain/SolinasEtAl-GolgiCell (MIT), OpenSourceBrain/VervaekeEtAl-GolgiCellNetwork (MIT), mbezaire/ca1 (no license), OpenSourceBrain/WangBuzsaki1996 (MIT), OpenSourceBrain/MiglioreEtAl14_OlfactoryBulb3D (MIT), openworm/hodgkin_huxley_tutorial (LGPL-3.0), openworm/muscle_model (MIT), openworm/c302 (MIT), opensourcebrain/hindmarshrose1984 (no license), OpenSourceBrain/ArborShowcase (no license), NeuroML/Cvapp-NeuroMorpho.org (no license), neuroml/neuroml2 (LGPL-3.0), NeuroML (no license), LEMS (no license), Zenodo 2535506 (other-open), Zenodo 6417333 (CC-BY-4.0), Zenodo 13350473 (CC-BY-4.0), Zenodo 13342731 (CC-BY-4.0), Zenodo 8364786 (other-open), Zenodo 10783062 (CC-BY-4.0), neuroml/pyneuroml (LGPL-3.0), lems/jlems (MIT)

Status: code verified, 3,697 files readable, 11 matches

[21066] doi:10.7554/elife.97731 [paper, repository]

Mapping patterns of thought onto brain activity during movie-watching.

Journal: eLife

Authors' code: willstrawson/StateSpace (no license), Zenodo 14112469 (CC-BY-4.0)

Status: code verified, 15 files readable, 2 matches

Thursday, 9 January 2025 (31 papers)

[21067] doi:10.1007/s10654-024-01187-5 [paper, repository]

Unidirectional and bidirectional causation between smoking and blood DNA methylation: evidence from twin-based Mendelian randomisation.

Journal: European journal of epidemiology

Authors' code: singh-madhur/MRDOC_Smoking_DNAm_NTR (no license)

Status: code verified, 32 files readable, 12 matches

[21068] doi:10.1007/s11064-024-04326-2 [paper, data]

Identification of a Subpopulation of Astrocyte Progenitor Cells in the Neonatal Subventricular Zone: Evidence that Migration is Regulated by Glutamate Signaling.

Journal: Neurochemical research

Status: data only, 1 dataset cited

[21069] doi:10.1007/s12021-024-09708-z [paper, repository]

Automated Lesion and Feature Extraction Pipeline for Brain MRIs with Interpretability.

Journal: Neuroinformatics

Authors' code: reghbali/pyalfe (BSD-3-Clause)

Status: code verified, 40 files readable, 12 matches

[21070] doi:10.1016/j.celrep.2024.115113 [paper]

TDP43 autoregulation gives rise to dominant negative isoforms that are tightly controlled by transcriptional and post-translational mechanisms.

Journal: Cell reports

Status: code on request

[21071] doi:10.1016/j.celrep.2024.115175 [paper, repository]

Transcriptional determinants of goal-directed learning and representational drift in the parahippocampal cortex.

Journal: Cell reports

Authors' code: doi:10.12751/g-node.8yt6sr (no license), AllenInstitute/hicat (BSD-2-Clause)

Status: code verified, 66 files readable, 2 matches

[21072] doi:10.1016/j.dcn.2025.101509 [paper, repository]

Fear extinction retention in children, adolescents, and adults.

Journal: Developmental cognitive neuroscience

Authors' code: runehaubo/ordinal (GPL-2.0)

Status: code verified, 74 files readable, 1 match

[21073] doi:10.1016/j.heliyon.2024.e41471 [paper, data]

The complexity of caffeine's effects on regular coffee consumers.

Journal: Heliyon

Status: data only, 1 dataset cited

[21074] doi:10.1016/j.isci.2025.111753 [paper, repository]

Unsupervised spatiotemporal classification of deformation patterns of embryonic tissues matches their fate map.

Journal: iScience

Authors' code: dpastoresc/EmbryoKinematicsFramework (MIT), Zenodo 14698253 (CC-BY-4.0)

Status: code verified, 278 files readable, 4 matches

[21075] doi:10.1038/s41467-024-55257-z [paper, repository]

Molecular logic for cellular specializations that initiate the auditory parallel processing pathways.

Journal: Nature communications

Authors' code: bcmjianglab/cn_project (MIT), Zenodo 14036008 (CC-BY-4.0)

Status: code verified, 40 files readable, 18 matches

[21076] doi:10.1038/s41531-024-00846-4 [paper, data]

Microglia depletion reduces neurodegeneration and remodels extracellular matrix in a mouse Parkinson's disease model triggered by α-synuclein overexpression.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[21077] doi:10.1038/s41531-024-00862-4 [paper]

Synaptic vesicle characterization of iPSC-derived dopaminergic neurons provides insight into distinct secretory vesicle pools.

Journal: NPJ Parkinson's disease

Status: code on request

[21078] doi:10.1038/s42003-024-07394-w [paper, repository]

Systemic regulation of retinal medium-chain fatty acid oxidation repletes TCA cycle flux in oxygen-induced retinopathy.

Journal: Communications biology

Authors' code: almut-heinken/ngeresysbio (no license)

Status: code verified, 47 files readable, 4 matches

[21079] doi:10.1162/imag_a_00426 [paper, repository]

Multi-echo acquisition and thermal denoising advances precision functional imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DCAN-Labs/code_infant_me_nordic_paper (no license), Zenodo 10293494 (CC-BY-4.0), Zenodo 7683282 (other-open), Zenodo 6461353 (LGPL-2.1), dcan-labs/abcd-hcp-pipeline (BSD-3-Clause), me-ica/tedana (LGPL-2.1), dcan-labs/infant-abcd-bids-pipeline (BSD-3-Clause)

Status: code verified, 194 files readable, 9 matches

[21080] doi:10.1186/s10194-024-01946-5 [paper, repository]

A robust multimodal brain MRI-based diagnostic model for migraine: validation across different migraine phases and longitudinal follow-up data.

Journal: The journal of headache and pain

Authors' code: CAMIN-neuro/FuNP (no license), MICA-MNI/BrainSpace (BSD-3-Clause), brainlife/BCT (MIT)

Status: code verified, 292 files readable, 4 matches

[21081] doi:10.1186/s11658-024-00681-8 [paper, data]

Failure to repair damaged NAD(P)H blocks de novo serine synthesis in human cells.

Journal: Cellular & molecular biology letters

Status: data only, 3 datasets cited

[21082] doi:10.1186/s42466-024-00359-8 [paper, data]

The role of the left primary motor cortex in apraxia.

Journal: Neurological research and practice

Status: data only, 1 dataset cited

[21083] doi:10.1242/dev.204438 [paper, repository]

Spinal cord elongation enables proportional regulation of the zebrafish posterior body.

Journal: Development (Cambridge, England)

Authors' code: DillanSaunders/TailbudAnalysis (BSD-2-Clause)

Status: code verified, 8 files readable, 2 matches

[21084] doi:10.1242/jcs.263451 [paper, data]

Stem cell expression of CXCR4 regulates tissue composition in the vomeronasal organ.

Journal: Journal of cell science

Status: data only, 1 dataset cited

[21085] doi:10.12688/f1000research.160088.1 [paper, data]

Applications of MR Finger printing derived T1 and T2 values in Adult brain: A Systematic review.

Journal: F1000Research

Status: data only, 1 dataset cited

[21086] doi:10.1371/journal.pone.0313875 [paper, repository]

VARX Granger analysis: Models for neuroscience, physiology, sociology and econometrics.

Journal: PloS one

Authors' code: lcparra/varx (no license)

Status: code verified, 28 files readable, 9 matches

[21087] doi:10.1371/journal.pone.0314173 [paper, data]

Effect of individual variations in genes related to dopamine brain transmission on performance with and without rewards during motor sequence and probabilistic learning tasks in children and young adults with and without cerebral palsy.

Journal: PloS one

Status: data only, 1 dataset cited

[21088] doi:10.1371/journal.pone.0315562 [paper, data]

Electric field stimulation directs target-specific axon regeneration and partial restoration of vision after optic nerve crush injury.

Journal: PloS one

Status: data only, 3 datasets cited

[21089] doi:10.3389/fimmu.2024.1504668 [paper, data]

Blood leukocyte-based clusters in patients with traumatic brain injury.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[21090] doi:10.3389/fnhum.2024.1481493 [paper, data]

Single-channel attention classification algorithm based on robust Kalman filtering and norm-constrained ELM.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[21091] doi:10.3389/fphar.2024.1531524 [paper, data]

Targeted lipidomics analysis of possible molecular mechanisms of lipid changes in temporal lobe epilepsy models.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[21092] doi:10.3390/brainsci15010054 [paper, repository]

The Neurodevelopmental Dynamics of Multilingual Experience During Childhood: A Longitudinal Behavioral, Structural, and Functional MRI Study.

Journal: Brain sciences

Authors' code: sourceforge.net/spmtools (no license)

Status: code verified

[21093] doi:10.3390/ijms26020520 [paper]

HERV-W Env Induces Neuron Pyroptosis via the NLRP3-CASP1-GSDMD Pathway in Recent-Onset Schizophrenia.

Journal: International journal of molecular sciences

Status: data only

[21094] doi:10.7554/elife.100088 [paper, repository]

The effect of transcutaneous auricular vagus nerve stimulation on cardiovascular function in subarachnoid hemorrhage patients: A randomized trial.

Journal: eLife

Authors' code: GanshengT/taVNS_SAH (no license)

Status: code verified, 9 files readable, 2 matches

[21095] doi:10.7554/elife.95528 [paper, repository]

High-resolution awake mouse fMRI at 14 tesla.

Journal: eLife

Authors' code: Zenodo 13821455 (CC-BY-4.0), Zenodo 13821456 (CC-BY-4.0), dhike1/awake_mouse (no license)

Status: code verified, 18 files readable

[21096] doi:10.7554/elife.96784 [paper, repository]

Fractal cycles of sleep, a new aperiodic activity-based definition of sleep cycles.

Journal: eLife

Authors' code: OSF gxzyd (no license)

Status: code verified, 3 files readable, 5 matches

[21097] doi:10.7554/elife.98742 [paper, repository]

Nitric oxide modulates contrast suppression in a subset of mouse retinal ganglion cells.

Journal: eLife

Authors' code: datajoint.github.io (no license), eulerlab/nitric_oxide_rgc_eLife (MIT), doi:10.12751/g-node.mpf63w (no license)

Status: code verified, 29 files readable, 4 matches

Wednesday, 8 January 2025 (37 papers)

[21098] doi:10.1007/s00439-024-02721-x [paper]

A genome-wide scan of non-coding RNAs and enhancers for refractive error and myopia.

Journal: Human genetics

Status: data only

[21099] doi:10.1016/j.dib.2025.111287 [paper, data]

GBM-Reservoir: Brain tumor (Glioblastoma Multiforme) MRI dataset collection with ground truth segmentation masks.

Journal: Data in brief

Status: data only, 2 datasets cited

[21100] doi:10.1016/j.heliyon.2024.e41271 [paper]

Deep learning-based prediction of mortality using brain midline shift and clinical information.

Journal: Heliyon

Status: code on request

[21101] doi:10.1016/j.jbc.2025.108162 [paper, data]

Axin-binding domain of glycogen synthase kinase 3β facilitates functional interactions with voltage-gated Na+ channel Na&lt;sub&gt;v&lt;/sub&gt;1.6.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[21102] doi:10.1016/j.xjmad.2025.100107 [paper, repository]

Neural activity to reward and loss predicting treatment outcomes for adults with generalized anxiety disorder: A randomized clinical trial.

Journal: Journal of mood and anxiety disorders

Authors' code: OSF nfj5v (no license)

Status: code verified, 1 file readable

[21103] doi:10.1021/acsabm.4c01678 [paper, data]

Chondroitin Sulfate and Proteinoids in Neuron Models.

Journal: ACS applied bio materials

Status: data only, 1 dataset cited

[21104] doi:10.1021/acsomega.4c10277 [paper, data]

On Oscillations in the External Electrical Potential of Sea Urchins.

Journal: ACS omega

Status: data only, 1 dataset cited

[21105] doi:10.1038/s41398-024-03218-x [paper]

Auditory evoked-potential abnormalities in a mouse model of 22q11.2 Deletion Syndrome and their interactions with hearing impairment.

Journal: Translational psychiatry

Status: code on request

[21106] doi:10.1038/s41467-024-54715-y [paper, repository]

Stereo-seq of the prefrontal cortex in aging and Alzheimer's disease.

Journal: Nature communications

Authors' code: STOmics/SAW (GPL-3.0), Wonderangela123/AD-Stereo-Seq-Project (no license), Zenodo 14048103 (CC-BY-4.0)

Status: code verified, 61 files readable, 6 matches

[21107] doi:10.1038/s41467-024-55178-x [paper, repository]

Premature birth changes wiring constraints in neonatal structural brain networks.

Journal: Nature communications

Authors' code: alexamousley/neonatal_generative_network_modeling (no license), Zenodo 13913488 (CC-BY-4.0)

Status: code verified, 38 files readable, 12 matches

[21108] doi:10.1038/s41467-024-55548-5 [paper, data]

A high-fidelity CRISPR-Cas13 system improves abnormalities associated with C9ORF72-linked ALS/FTD.

Journal: Nature communications

Status: data only, 3 datasets cited

[21109] doi:10.1038/s41467-024-55798-3 [paper, repository]

Interconnected pathways link faecal microbiota plasma lipids and brain activity to childhood malnutrition related cognition.

Journal: Nature communications

Authors' code: theoportlock/m4efad (no license), Zenodo 14428001 (MIT)

Status: code verified, 362 files readable, 15 matches

[21110] doi:10.1038/s41540-024-00478-7 [paper, repository]

Biopsy location and tumor-associated macrophages in predicting malignant glioma recurrence using an in-silico model.

Journal: NPJ systems biology and applications

Authors' code: pejmanshojam31/glioma_macrophage_model (MIT)

Status: code verified, 29 files readable, 7 matches

[21111] doi:10.1038/s41586-024-08351-7 [paper, repository]

Molecular and cellular dynamics of the developing human neocortex.

Journal: Nature

Authors' code: doi:10.5061/dryad.2280gb612 (no license), complexdisease/Human_Cortex_Dev_Multiome (GPL-3.0)

Status: code verified, 34 files readable, 40 matches

[21112] doi:10.1038/s41586-024-08371-3 [paper, data]

Bidirectional histone monoaminylation dynamics regulate neural rhythmicity.

Journal: Nature

Status: code on request, 1 dataset cited

[21113] doi:10.1038/s41598-024-83867-6 [paper, repository]

Task relevant autoencoding enhances machine learning for human neuroscience.

Journal: Scientific reports

Authors' code: mehdi-or/TRACE (Apache-2.0)

Status: code verified, 4 files readable, 1 match

[21114] doi:10.1038/s41598-025-85842-1 [paper, data]

The E3 ubiquitin ligase MARCH1 mediates downregulation of plasma membrane GABA&lt;sub&gt;B&lt;/sub&gt; receptors under ischemic conditions by inhibiting fast receptor recycling.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21115] doi:10.1038/s41746-024-01416-x [paper, repository]

Scaling convolutional neural networks achieves expert level seizure detection in neonatal EEG.

Journal: NPJ digital medicine

Authors' code: cergenx/SPEED (MIT), cergenx/ConvNeXt-Seizure (MIT)

Status: code verified, 31 files readable, 2 matches

[21116] doi:10.1073/pnas.2417617122 [paper, repository]

Engaging dystonia networks with subthalamic stimulation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF zhtjk (no license), kinway25/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 8 matches

[21117] doi:10.1080/19768354.2024.2448999 [paper, data]

Loss of neuronal βPix isoforms impairs neuronal morphology in the hippocampus and causes behavioral defects.

Journal: Animal cells and systems

Status: data only, 1 dataset cited

[21118] doi:10.1098/rsbl.2024.0478 [paper, repository]

Gene expression comparisons between captive and wild shrew brains reveal captivity effects.

Journal: Biology letters

Authors' code: figshare 27237300 (CC-BY-4.0), Zenodo 8408014 (MIT)

Status: code verified, 6 files readable, 4 matches

[21119] doi:10.1126/sciadv.ado6705 [paper, repository]

Subthreshold repetitive transcranial magnetic stimulation induces cortical layer-, brain region-, and protocol-dependent neural plasticity.

Journal: Science advances

Authors' code: rebecca-ong/rTMS-spatial (no license)

Status: code verified, 5 files readable, 6 matches

[21120] doi:10.1126/sciadv.adp5763 [paper, data]

Photophysics-informed two-photon voltage imaging using FRET-opsin voltage indicators.

Journal: Science advances

Status: data only, 1 dataset cited

[21121] doi:10.1126/sciadv.adq8336 [paper, repository]

Plasticity of human resilience mechanisms.

Journal: Science advances

Authors' code: PierreGagnepain/predictive_control (no license)

Status: code verified, 170 files readable, 10 matches

[21122] doi:10.1126/sciadv.adr6214 [paper, data]

A spatial code for temporal information is necessary for efficient sensory learning.

Journal: Science advances

Status: data only, 1 dataset cited

[21123] doi:10.1126/sciadv.ads6660 [paper, data]

Differential encoding of mammalian proprioception by voltage-gated sodium channels.

Journal: Science advances

Status: data only, 1 dataset cited

[21124] doi:10.1162/imag_a_00418 [paper, repository]

Perinatal development of structural thalamocortical connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: StuartJO/ThalamicDevGrad (no license)

Status: code verified, 466 files readable, 4 matches

[21125] doi:10.1162/imag_a_00434 [paper, repository]

Evaluating permutation-based inference for partial least squares analysis of neuroimaging data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: danyluik/pls_rotation_analysis (GPL-3.0)

Status: code verified, 51 files readable, 6 matches

[21126] doi:10.1371/journal.pbio.3002947 [paper, repository]

Cortical direction selectivity increases from the input to the output layers of visual cortex.

Journal: PLoS biology

Authors' code: Zenodo 14177191 (CC-BY-4.0), waveformdai/directionselectivity_v1 (no license)

Status: code verified, 2 files readable

[21127] doi:10.1523/jneurosci.0809-24.2024 [paper, repository]

An Eccentricity Gradient Reversal across High-Level Visual Cortex.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: mezera/mrQ (MIT)

Status: code verified, 126 files readable

[21128] doi:10.1523/jneurosci.1318-24.2024 [paper, repository]

A Data-Driven Analysis of the Perceptual and Neural Responses to Natural Objects Reveals Organizing Principles of Human Visual Cognition.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: nno/surfing (BSD-2-Clause), OSF scy2f (no license)

Status: code verified, 256 files readable, 2 matches

[21129] doi:10.1523/jneurosci.1673-23.2024 [paper, data]

Color and Spatial Frequency Provide Functional Signatures of Retinotopic Visual Areas.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[21130] doi:10.3389/fncir.2024.1505204 [paper, repository]

Modeling analysis of depolarization-assisted afterdischarge in hippocampal mossy fibers.

Journal: Frontiers in neural circuits

Authors' code: modeldb:2018003 (no license)

Status: code verified

[21131] doi:10.3389/fnins.2024.1508747 [paper, data]

ID3RSNet: cross-subject driver drowsiness detection from raw single-channel EEG with an interpretable residual shrinkage network.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[21132] doi:10.3758/s13423-024-02630-0 [paper, repository]

Cracking arbitrariness: A data-driven study of auditory iconicity in spoken English.

Journal: Psychonomic bulletin & review

Authors' code: Andrea-de-Varda/iconicity-datadriven (no license), tfhub.dev/google/vggish (no license), bepierre/speechvgg (GPL-3.0), cchyung/freesound-scraper (no license)

Status: code verified, 27 files readable, 1 match

[21133] doi:10.7554/elife.100856 [paper, data]

Multi-dimensional oscillatory activity of mouse GnRH neurons in vivo.

Journal: eLife

Status: data only, 1 dataset cited

[21134] doi:10.7554/elife.93327 [paper, repository]

Neural evidence of functional compensation for fluid intelligence in healthy ageing.

Journal: eLife

Authors' code: ethanknights/Knightsetal_fMRI-Cattell-Compensation (MIT)

Status: code verified, 30 files readable, 7 matches

Tuesday, 7 January 2025 (35 papers)

[21135] doi:10.1016/j.celrep.2024.115162 [paper, repository]

Emotional words evoke region- and valence-specific patterns of concurrent neuromodulator release in human thalamus and cortex.

Journal: Cell reports

Authors' code: srbatten10/SR_Batten_et_al_Cell_Reports (no license)

Status: code verified, 46 files readable, 8 matches

[21136] doi:10.1016/j.isci.2025.111769 [paper, data]

Oxidative stress induced protein aggregation via GGCT produced pyroglutamic acid in drug resistant glioblastoma.

Journal: iScience

Status: data only, 1 dataset cited

[21137] doi:10.1016/j.nbd.2025.106795 [paper]

Cerebral cortical functional hyperconnectivity in a mouse model of spinocerebellar ataxia type 8 (SCA8).

Journal: Neurobiology of disease

Status: code on request

[21138] doi:10.1038/s12276-024-01386-w [paper, data]

The WAVE complex in developmental and adulthood brain disorders.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[21139] doi:10.1038/s41467-024-55741-6 [paper, data]

Mitotic block and epigenetic repression underlie neurodevelopmental defects and neurobehavioral deficits in congenital heart disease.

Journal: Nature communications

Status: data only, 3 datasets cited

[21140] doi:10.1038/s41467-025-55817-x [paper, repository]

Dentate gyrus norepinephrine ramping facilitates aversive contextual processing.

Journal: Nature communications

Authors' code: Bruchas-Lab (no license)

Status: code verified

[21141] doi:10.1038/s41538-024-00364-w [paper]

Green tea consumption and cerebral white matter lesions in community-dwelling older adults without dementia.

Journal: NPJ science of food

Status: code on request

[21142] doi:10.1038/s41598-024-83128-6 [paper, repository]

Prediction of white matter hyperintensities evolution one-year post-stroke from a single-point brain MRI and stroke lesions information.

Journal: Scientific reports

Authors' code: febrianrachmadi/probunet-gan-vie (MIT), febrianrachmadi (no license)

Status: code verified, 13 files readable, 3 matches

[21143] doi:10.1038/s42003-024-07447-0 [paper, repository]

Kilohertz electrical stimulation evokes robust cellular responses like conventional frequencies but distinct population dynamics.

Journal: Communications biology

Authors' code: HanLabBU/Ravasio-Nature-Communications-Biology-2024 (MIT), HanLabBU/Ravasio-Communications-Biology-2024 (MIT)

Status: code verified, 274 files readable, 9 matches

[21144] doi:10.1038/s44319-024-00362-9 [paper]

Schizophrenia-related Xpo7 haploinsufficiency leads to behavioral and nuclear transport pathologies.

Journal: EMBO reports

Status: data only

[21145] doi:10.1038/s44323-024-00017-x [paper]

Sleep-stage dependent patterning of slowly propagating brain activity.

Journal: Npj biological timing and sleep

Status: code on request

[21146] doi:10.1073/pnas.2410433122 [paper, data]

A synapse-specific refractory period for plasticity at individual dendritic spines.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[21147] doi:10.1080/19490976.2024.2447822 [paper, data]

Mouse strain-specific responses along the gut-brain axis upon fecal microbiota transplantation from children with autism.

Journal: Gut microbes

Status: data only, 1 dataset cited

[21148] doi:10.1111/mec.17649 [paper, data]

Molecular Adjustment to a Social Niche: Brain Transcriptomes Reveal Divergent Influence of Social Environment on the Two Queen Morphs of the Ant Temnothorax rugatulus.

Journal: Molecular ecology

Status: data only, 1 dataset cited

[21149] doi:10.1162/imag_a_00430 [paper, repository]

Challenges in measuring individual differences of brain function.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: tingsterx/reliability_explorer (AGPL-3.0)

Status: code verified, 29 files readable

[21150] doi:10.1162/imag_a_00435 [paper]

Macrovascular contributions to resting-state fMRI signals: A comparison between EPI and bSSFP at 9.4 Tesla.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[21151] doi:10.1186/s12964-024-02007-9 [paper, repository]

N88S seipin-related seipinopathy is a lipidopathy associated with loss of iron homeostasis.

Journal: Cell communication and signaling : CCS

Authors' code: jdstorey/qvalue (no license)

Status: code verified, 12 files readable

[21152] doi:10.1186/s12967-024-06046-1 [paper, repository]

Reversal gene expression assessment for drug repurposing, a case study of glioblastoma.

Journal: Journal of translational medicine

Authors' code: ncats/drug_rep (no license)

Status: code verified, 49 files readable

[21153] doi:10.1186/s13024-024-00783-z [paper, data]

VCP regulates early tau seed amplification via specific cofactors.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[21154] doi:10.1186/s41512-024-00183-3 [paper]

Rehabilitation outcomes after comprehensive post-acute inpatient rehabilitation following moderate to severe acquired brain injury-study protocol for an overall prognosis study based on routinely collected health data.

Journal: Diagnostic and prognostic research

Status: code on request

[21155] doi:10.1371/journal.pcbi.1012691 [paper, repository]

Low-dimensional controllability of brain networks.

Journal: PLoS computational biology

Authors' code: Inria-NERV/Network-Control (GPL-3.0), Inria-NERV/UKB-dwi-2-connectome (no license)

Status: code verified, 63 files readable, 4 matches

[21156] doi:10.1371/journal.pcbi.1012709 [paper, repository]

Intraneuronal binding of amyloid beta with reelin-Implications for the onset of Alzheimer's disease.

Journal: PLoS computational biology

Authors' code: models.physiomeproject.org/workspace/be4 (no license)

Status: code verified

[21157] doi:10.1371/journal.pcbi.1012725 [paper, repository]

Prioritization of causal genes from genome-wide association studies by Bayesian data integration across loci.

Journal: PLoS computational biology

Authors' code: joelbaderlab/signet_v1 (BSD-2-Clause), Zenodo 12774442 (CC-BY-4.0)

Status: code verified, 29 files readable, 2 matches

[21158] doi:10.1371/journal.pone.0305305 [paper, data]

Feasibility and acceptability for LION, a fully remote, randomized clinical trial within the VA for light therapy to improve sleep in Veterans with and without TBI: An MTBI2 sponsored protocol.

Journal: PloS one

Status: data only, 1 dataset cited

[21159] doi:10.1371/journal.pone.0312030 [paper, data]

The pleasurable urge to move to music is unchanged in people with musical anhedonia.

Journal: PloS one

Status: data only, 1 dataset cited

[21160] doi:10.1371/journal.pone.0313292 [paper, data]

Comparison of cellular-based therapies following a long-segmental peripheral nerve defect in a rat model.

Journal: PloS one

Status: data only, 1 dataset cited

[21161] doi:10.3389/fgene.2024.1451150 [paper, data]

Co-methylation networks associated with cognition and structural brain development during adolescence.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[21162] doi:10.3389/fnbeh.2024.1457663 [paper, data]

Understanding gender differences in reasoning and specific paradigm using meta-analysis of neuroimaging.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[21163] doi:10.3389/fnins.2024.1504047 [paper, data]

High spatial resolution gene expression profiling and characterization of neuroblasts migrating in the peri-injured cortex using photo-isolation chemistry.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[21164] doi:10.3389/fnins.2024.1510175 [paper, data]

Application of MRI image segmentation algorithm for brain tumors based on improved YOLO.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[21165] doi:10.3389/fpsyg.2024.1371876 [paper, data]

The neurosociological paradigm of the metaverse.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[21166] doi:10.3390/brainsci15010050 [paper, data]

Motor Imagery EEG Classification Based on Multi-Domain Feature Rotation and Stacking Ensemble.

Journal: Brain sciences

Status: data only, 2 datasets cited

[21167] doi:10.3390/cells14020066 [paper]

Comprehensive Analysis Identifies <i>THEMIS2</i> as a Potential Prognostic and Immunological Biomarker in Glioblastoma.

Journal: Cells

Status: code on request

[21168] doi:10.3390/cells14020072 [paper, data]

Modulation of Stemness and Differentiation Regulators by Valproic Acid in Medulloblastoma Neurospheres.

Journal: Cells

Status: data only, 1 dataset cited

[21169] doi:10.3758/s13415-024-01257-x [paper, repository]

When group grievances become personal: The neural correlates of group and personal rejection.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF pc4fs (no license), SBL-Barcelona/RateME-fMRI (MIT)

Status: code verified, 24 files readable, 5 matches

Monday, 6 January 2025 (35 papers)

[21170] doi:10.1016/j.xinn.2024.100755 [paper, repository]

The Chimpanzee Brainnetome Atlas reveals distinct connectivity and gene expression profiles relative to humans.

Journal: Innovation (Cambridge (Mass.))

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable

[21171] doi:10.1038/s41439-024-00306-8 [paper, data]

Clinical characteristics of the Ala21Val variant in the myelin proteolipid protein 1 (PLP1) gene associated with Pelizaeus-Merzbacher disease in a Brazilian male patient.

Journal: Human genome variation

Status: data only, 1 dataset cited

[21172] doi:10.1038/s41467-024-55500-7 [paper, data]

Rapid and quantitative functional interrogation of human enhancer variant activity in live mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[21173] doi:10.1038/s41467-024-55547-6 [paper, data]

Selectively expressed RNA molecules as a versatile tool for functionalized cell targeting.

Journal: Nature communications

Status: data only, 1 dataset cited

[21174] doi:10.1038/s41467-024-55599-8 [paper, repository]

Hierarchical representations of relative numerical magnitudes in the human frontoparietal cortex.

Journal: Nature communications

Authors' code: Zenodo 14262995 (CC-BY-4.0)

Status: code verified, 4 files readable, 5 matches

[21175] doi:10.1038/s41593-024-01833-x [paper, data]

Typical development of synaptic and neuronal properties can proceed without microglia in the cortex and thalamus.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

[21176] doi:10.1038/s41593-024-01839-5 [paper, repository]

Context-dependent decision-making in the primate hippocampal-prefrontal circuit.

Journal: Nature neuroscience

Authors' code: t-elston/cued_flex_val (MIT)

Status: code verified, 206 files readable, 12 matches

[21177] doi:10.1038/s41593-024-01848-4 [paper, repository]

Multimodal transcriptomics reveal neurogenic aging trajectories and age-related regional inflammation in the dentate gyrus.

Journal: Nature neuroscience

Authors' code: JessbergerLab/AgingNeurogenesis_Transcriptomics (no license)

Status: code verified, 2 files readable, 1 match

[21178] doi:10.1038/s41593-024-01850-w [paper, data]

Aberrant splicing in Huntington's disease accompanies disrupted TDP-43 activity and altered m6A RNA modification.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[21179] doi:10.1038/s41597-024-04357-y [paper, repository]

NEBULA101: an open dataset for the study of language aptitude in behaviour, brain structure and function.

Journal: Scientific data

Authors' code: montilab.psych.ucla.edu/fmri-wiki/optibet (no license)

Status: code verified

[21180] doi:10.1038/s41598-024-84901-3 [paper, data]

An effective vessel segmentation method using SLOA-HGC.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21181] doi:10.1038/s42003-024-07356-2 [paper, repository]

Label free, capillary-scale blood flow mapping in vivo reveals that low-intensity focused ultrasound evokes persistent dilation in cortical microvasculature.

Journal: Communications biology

Authors' code: Zenodo 14249219 (CC-BY-4.0)

Status: code verified, 20 files readable

[21182] doi:10.1038/s44321-024-00189-w [paper, data]

Macrophage-induced enteric neurodegeneration leads to motility impairment during gut inflammation.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[21183] doi:10.1073/pnas.2413140122 [paper, data]

Characterizing progenitor cells in developing and injured spinal cord: Insights from single-nucleus transcriptomics and lineage tracing.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[21184] doi:10.1088/1361-6560/ad9db0 [paper, repository]

Design, construction and validation of a magnetic particle imaging (MPI) system for human brain imaging.

Journal: Physics in medicine and biology

Authors' code: EliMattingly22/Biot.jl (MIT)

Status: code verified, 13 files readable

[21185] doi:10.1093/biomethods/bpaf001 [paper, data]

Novel method for detection of Aβ and Iso-D7-Aβ N-terminus-specific B cells and Iso-D7-Aβ-specific antibodies.

Journal: Biology methods & protocols

Status: data only, 1 dataset cited

[21186] doi:10.1093/braincomms/fcae459 [paper, data]

Contributions of connectional pathways to shaping Alzheimer's disease pathologies.

Journal: Brain communications

Status: code on request, 1 dataset cited

[21187] doi:10.1093/braincomms/fcae478 [paper, repository]

Multi-omics characterization of improved cognitive functions in Parkinson's disease patients after the combined metabolic activator treatment: a randomized, double-blinded, placebo-controlled phase II trial.

Journal: Brain communications

Authors' code: hoaltay/CMA_PD (no license)

Status: code verified, 3 files readable

[21188] doi:10.1101/2025.01.06.631354 [paper, data]

Tastes and retronasal odours evoke a shared flavour-specific neural code in the human insula

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[21189] doi:10.1111/epi.18246 [paper, data]

Anterior prefrontal EEG theta activities indicate memory and executive functions in patients with epilepsy.

Journal: Epilepsia

Status: data only, 1 dataset cited

[21190] doi:10.1162/imag_a_00444 [paper, repository]

Arterial spin labelling perfusion MRI analysis for the Human Connectome Project Lifespan Ageing and Development studies.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: physimals/hcp-asl (Apache-2.0), Zenodo 7859541 (other-open), tomfrankkirk/regtricks (BSD-3-Clause)

Status: code verified, 62 files readable, 16 matches

[21191] doi:10.1186/s12860-024-00529-1 [paper, data]

Functional significance of some common oxytocin receptor SNPs involved in complex human traits.

Journal: BMC molecular and cell biology

Status: data only, 1 dataset cited

[21192] doi:10.1186/s12911-024-02845-0 [paper, data]

A hybrid CNN-Bi-LSTM model with feature fusion for accurate epilepsy seizure detection.

Journal: BMC medical informatics and decision making

Status: data only, 2 datasets cited

[21193] doi:10.1186/s12967-024-05992-0 [paper, repository]

Quality, topics, and demographic trends of animal systematic reviews - an umbrella review.

Journal: Journal of translational medicine

Authors' code: OSF wx5ta (no license)

Status: code verified, 1 file readable, 5 matches

[21194] doi:10.1186/s13023-024-03495-1 [paper]

Long-term neuropsychologic outcome of pre-emptive mTOR inhibitor treatment in children with tuberous sclerosis complex (TSC) under 4 months of age (PROTECT), a two-arm, randomized, observer-blind, controlled phase IIb national multicentre clinical trial: study protocol.

Journal: Orphanet journal of rare diseases

Status: code on request

[21195] doi:10.1186/s13195-024-01643-0 [paper, repository]

Depressive symptoms in older adults are associated with changes in stress-related markers, functional connectivity and brain volume.

Journal: Alzheimer's research & therapy

Authors' code: silversantestudy.eu/2020/09 (no license)

Status: code found, still to be checked

[21196] doi:10.1371/journal.pcbi.1012069 [paper, repository]

Role and modulation of various spinal pathways for human upper limb control in different gravity conditions.

Journal: PLoS computational biology

Authors' code: AliceBrue/sc_modulation (no license)

Status: code verified, 135 files readable, 8 matches

[21197] doi:10.1371/journal.pcbi.1012723 [paper, repository]

Excitatory-inhibitory homeostasis and bifurcation control in the Wilson-Cowan model of cortical dynamics.

Journal: PLoS computational biology

Authors' code: francpsantos/wc_node_homeostasis (no license)

Status: code verified, 3 files readable, 1 match

[21198] doi:10.3389/fcell.2024.1518533 [paper, data]

Altered cytoskeleton dynamics in patient-derived iPSC-based model of PCDH19 clustering epilepsy.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[21199] doi:10.3389/fneur.2024.1474461 [paper, repository]

Utilizing machine-learning techniques on MRI radiomics to identify primary tumors in brain metastases.

Journal: Frontiers in neurology

Authors' code: salan668/FAE (Apache-2.0)

Status: code verified, 95 files readable, 11 matches

[21200] doi:10.3389/fnhum.2024.1460139 [paper, data]

Cognitive component of auditory attention to natural speech events.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[21201] doi:10.3389/fnhum.2024.1482353 [paper, repository]

Long-term mindfulness meditation increases occurrence of sensory and attention brain states.

Journal: Frontiers in human neuroscience

Authors' code: xiangruili/dicm2nii (BSD-2-Clause)

Status: code verified, 22 files readable, 3 matches

[21202] doi:10.3389/fnins.2024.1297344 [paper, data]

How learning to read Braille in visual and tactile domains reorganizes the sighted brain.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[21203] doi:10.3389/fnins.2024.1499762 [paper, repository]

NORDIC denoising on VASO data.

Journal: Frontiers in neuroscience

Authors' code: LasseKnudsen1/NORDIC-VASO (no license)

Status: code verified, 21 files readable, 5 matches

[21204] doi:10.7554/elife.97179 [paper, data]

GnRH pulse generator activity in mouse models of polycystic ovary syndrome.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 5 January 2025 (4 papers)

[21205] doi:10.1016/j.ibneur.2025.01.001 [paper, data]

Effects of obesity on aging brain and cognitive decline: A cohort study from the UK Biobank.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[21206] doi:10.1111/acel.14472 [paper, data]

Elevated p16Ink4a Expression Enhances Tau Phosphorylation in Neurons Differentiated From Human-Induced Pluripotent Stem Cells.

Journal: Aging cell

Status: data only, 1 dataset cited

[21207] doi:10.21769/bioprotoc.5148 [paper, repository]

Automatic Adaptive Algorithm for Delineation of Cerebral-Spinal Fluid Regions for Non-contrast Magnetic Resonance Imaging Volumetry and Cisternography in Mice.

Journal: Bio-protocol

Authors' code: RSG1UCPH/CSF-space-segmentation-in-3D-CISS (no license)

Status: code verified, 10 files readable, 7 matches

[21208] doi:10.3390/brainsci15010046 [paper, data]

Non-Rigid Cycle Consistent Bidirectional Network with Transformer for Unsupervised Deformable Functional Magnetic Resonance Imaging Registration.

Journal: Brain sciences

Status: data only, 1 dataset cited

Saturday, 4 January 2025 (16 papers)

[21209] doi:10.1007/s12021-024-09705-2 [paper, repository]

NeuroCarto: A Toolkit for Building Custom Read-out Channel Maps for High Electrode-count Neural Probes.

Journal: Neuroinformatics

Authors' code: AntonioST/NeuroCarto (BSD-3-Clause)

Status: code verified, 91 files readable

[21210] doi:10.1016/j.celrep.2024.115153 [paper, repository]

Fate erasure logic of gene networks underlying direct neuronal conversion of somatic cells by microRNAs.

Journal: Cell reports

Authors' code: Shians/Glimma (LGPL-3.0), alexdobin/STAR (MIT), COMBINE-lab/Salmon (BSD-3-Clause)

Status: code verified, 465 files readable

[21211] doi:10.1016/j.mtbio.2025.101455 [paper, data]

Doxorubicin-loaded PEGylated liposome modified with ANGPT2-specific peptide for integrative glioma-targeted imaging and therapy.

Journal: Materials today. Bio

Status: data only, 1 dataset cited

[21212] doi:10.1016/j.neuroimage.2024.120994 [paper, repository]

qPRF: A system to accelerate population receptive field modeling.

Journal: NeuroImage

Authors' code: license.tov.med.nyu.edu/product/efficient-population-receptive-field-estimation-with-qprf (no license)

Status: code verified

[21213] doi:10.1016/j.neuropsychologia.2025.109067 [paper, repository]

From MRIcro to MRIcron: The evolution of neuroimaging visualization tools.

Journal: Neuropsychologia

Authors' code: neurolabusc/MRIcron (BSD-3-Clause)

Status: code verified, 5 files readable

[21214] doi:10.1016/j.neurot.2024.e00517 [paper, data]

Delayed atorvastatin delivery promotes recovery after experimental spinal cord injury.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[21215] doi:10.1016/j.tranon.2024.102264 [paper, data]

TNG908 is a brain-penetrant, MTA-cooperative PRMT5 inhibitor developed for the treatment of MTAP-deleted cancers.

Journal: Translational oncology

Status: data only, 1 dataset cited

[21216] doi:10.1038/s41467-024-55611-1 [paper, repository]

Connecting genomic results for psychiatric disorders to human brain cell types and regions reveals convergence with functional connectivity.

Journal: Nature communications

Authors' code: BioPsyk/cleansumstats (no license), Hjerling-Leffler-Lab/TDEP-sLDSC (no license)

Status: code verified, 177 files readable, 14 matches

[21217] doi:10.1038/s41598-024-81271-8 [paper, data]

Brain activity patterns reflecting security perceptions of female cyclists in virtual reality experiments.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21218] doi:10.1038/s41598-024-84429-6 [paper, data]

Cognitive load detection through EEG lead wise feature optimization and ensemble classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21219] doi:10.1038/s41746-024-01364-6 [paper]

N2GNet tracks gait performance from subthalamic neural signals in Parkinson's disease.

Journal: NPJ digital medicine

Status: code on request

[21220] doi:10.1038/s42003-024-07391-z [paper, repository]

Reversal of neuronal tau pathology via adiponectin receptor activation.

Journal: Communications biology

Authors' code: DannyLasky/PatchClamp (no license)

Status: code verified, 24 files readable, 3 matches

[21221] doi:10.1038/s44271-024-00169-3 [paper, repository]

Humans rationally balance detailed and temporally abstract world models.

Journal: Communications psychology

Authors' code: ariekahn.github.io/policy-sailing-task (no license), ariekahn/sailing-paper-code (no license), ariekahn/policy-sailing-task (MIT), nivlab/nivturk (MIT)

Status: code verified, 169 files readable, 6 matches

[21222] doi:10.1159/000543289 [paper, data]

Deep Brain Stimulation in Pediatric Populations: A Scoping Review of the Clinical Trial Landscape.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[21223] doi:10.1186/s12967-024-06039-0 [paper, data]

Weight cycling exacerbates glucose intolerance and hepatic triglyceride storage in mice with a history of chronic high fat diet exposure.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[21224] doi:10.1186/s13195-024-01659-6 [paper, repository]

Integrative multiomics reveals common endotypes across PSEN1, PSEN2, and APP mutations in familial Alzheimer's disease.

Journal: Alzheimer's research & therapy

Authors' code: Zenodo 8267332 (other-open), SubramaniamLab/FAD-Multiomics-Manuscript (no license)

Status: code verified, 80 files readable, 17 matches

Friday, 3 January 2025 (33 papers)

[21225] doi:10.1002/glia.24665 [paper, repository]

Glial Biologist's Guide to Mass Spectrometry-Based Lipidomics: A Tutorial From Sample Preparation to Data Analysis.

Journal: Glia

Authors' code: chopralab (no license)

Status: code verified

[21226] doi:10.1007/s00262-024-03920-1 [paper, repository]

Unsupervised clustering reveals noncanonical myeloid cell subsets in the brain tumor microenvironment.

Journal: Cancer immunology, immunotherapy : CII

Authors' code: NykterLab/Immune_infiltrates (no license)

Status: code verified, 6 files readable, 10 matches

[21227] doi:10.1007/s00405-024-09185-9 [paper, data]

Exploring the relationship between electrophysiological measures of the electrically evoked auditory brainstem response and speech perception outcomes post-cochlear implantation.

Journal: European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery

Status: data only, 1 dataset cited

[21228] doi:10.1016/j.brs.2024.12.1478 [paper, data]

MRI free targeting of deep brain structures based on facial landmarks.

Journal: Brain stimulation

Status: data only, 2 datasets cited

[21229] doi:10.1016/j.gene.2025.149215 [paper, data]

Incidence of alternative splicing associated with sex and opioid effects in the axon guidance pathway.

Journal: Gene

Status: data only, 1 dataset cited

[21230] doi:10.1016/j.isci.2024.111734 [paper, repository]

Enhancing unsupervised learning in medical image registration through scale-aware context aggregation.

Journal: iScience

Authors' code: Liuyuchen0224/ScaMorph (MIT)

Status: code verified, 22 files readable, 2 matches

[21231] doi:10.1038/s41467-024-51578-1 [paper, data]

Altered mitochondria-associated ER membrane (MAM) function shifts mitochondrial metabolism in amyotrophic lateral sclerosis (ALS).

Journal: Nature communications

Status: data only, 1 dataset cited

[21232] doi:10.1038/s41467-024-54699-9 [paper, repository]

Allocentric and egocentric spatial representations coexist in rodent medial entorhinal cortex.

Journal: Nature communications

Authors' code: Zhang-Sheng-Jia-Lab/MEC_Egocentric (GPL-3.0)

Status: code verified, 2 files readable

[21233] doi:10.1038/s41467-024-55220-y [paper, repository]

Quantum-limited stochastic optical neural networks operating at a few quanta per activation.

Journal: Nature communications

Authors' code: Zenodo 8188270 (CC-BY-4.0), mcmahon-lab/Single-Photon-Detection-Neural-Networks (CC-BY-4.0)

Status: code verified, 9 files readable

[21234] doi:10.1038/s41467-024-55397-2 [paper, data]

Cryo-EM structure and oligomerization of the human planar cell polarity core protein Vangl1.

Journal: Nature communications

Status: data only, 2 datasets cited

[21235] doi:10.1038/s41467-024-55698-6 [paper, repository]

regionalpcs improve discovery of DNA methylation associations with complex traits.

Journal: Nature communications

Authors' code: tyeulalio/regionalpcs (other), Zenodo 14004154 (CC-BY-4.0), Zenodo 14004291 (CC-BY-4.0), Zenodo 14020225 (CC-BY-4.0), Zenodo 14016038 (CC-BY-4.0), Zenodo 14027678 (CC0-1.0), Zenodo 14027807 (CC0-1.0), Zenodo 14029321 (CC0-1.0), Zenodo 14029154 (CC0-1.0), Zenodo 14028091 (CC0-1.0), Zenodo 14029286 (CC0-1.0), Zenodo 14029094 (CC0-1.0), Zenodo 14027962 (CC0-1.0), Zenodo 14027753 (CC0-1.0), Zenodo 14027718 (CC0-1.0), Zenodo 14004153 (CC-BY-4.0), tyeulalio/rosmap_methylation_regional_pcs (MIT)

Status: code verified, 228 files readable, 38 matches

[21236] doi:10.1038/s41531-024-00848-2 [paper]

Neurophysiological gradient in the Parkinsonian subthalamic nucleus as a marker for motor symptoms and apathy.

Journal: NPJ Parkinson's disease

Status: code on request

[21237] doi:10.1038/s41531-024-00854-4 [paper, data]

Radiological markers of CSF α-synuclein aggregation in Parkinson's disease patients.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[21238] doi:10.1038/s41531-024-00866-0 [paper, repository]

Key shifts in frontoparietal network activity in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: drive.google.com/file/d (no license)

Status: code verified

[21239] doi:10.1038/s41562-024-02078-1 [paper, repository]

Plasma proteomic signatures of social isolation and loneliness associated with morbidity and mortality.

Journal: Nature human behaviour

Authors' code: chunshen617/Proteomics_loneliness (MIT)

Status: code verified, 18 files readable, 15 matches

[21240] doi:10.1038/s41598-024-84208-3 [paper, repository]

Clustering of &gt; 145,000 symptom logs reveals distinct pre, peri, and menopausal phenotypes.

Journal: Scientific reports

Authors' code: OpensciAI/clustering-public (no license)

Status: code verified, 12 files readable, 5 matches

[21241] doi:10.1038/s41598-024-84616-5 [paper, repository]

Differential gray matter correlates and machine learning prediction of abuse and internalizing psychopathology in adolescent females.

Journal: Scientific reports

Authors' code: tjkeding/t1-cnn-feature-learning (no license)

Status: code verified, 5 files readable, 3 matches

[21242] doi:10.1038/s41598-024-84692-7 [paper, data]

Explainable artificial intelligence with UNet based segmentation and Bayesian machine learning for classification of brain tumors using MRI images.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21243] doi:10.1073/pnas.2415102122 [paper, repository]

Human brain dynamics are shaped by rare long-range connections over and above cortical geometry.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: thomasyeolab/cbig (MIT), jvohryzek/BrainEigenmodes_EDRLR (no license)

Status: code verified, 2,020 files readable, 9 matches

[21244] doi:10.1093/braincomms/fcaf001 [paper, repository]

Cochlear implantation in adults with acquired single-sided deafness improves cortical processing and comprehension of speech presented to the non-implanted ears: a longitudinal EEG study.

Journal: Brain communications

Authors' code: yapingchen/longitudinal-ssd-ci (no license)

Status: dead link

[21245] doi:10.1111/epi.18251 [paper, repository]

Detecting somatic variants in purified brain DNA obtained from surgically implanted depth electrodes in epilepsy.

Journal: Epilepsia

Authors' code: MTG-Lab/SomaticVariantAnalysis (no license)

Status: code verified, 4 files readable, 2 matches

[21246] doi:10.1126/sciadv.adm7255 [paper, repository]

Information sharing within a social network is key to behavioral flexibility-Lessons from mice tested under seminaturalistic conditions.

Journal: Science advances

Authors' code: tinyurl.com/3cukfen5 (no license), Zenodo 12739587 (Apache-2.0)

Status: code verified, 2 files readable

[21247] doi:10.1126/sciadv.adn1927 [paper, repository]

Comprehensive characterization of the transcriptional landscape in Alzheimer's disease (AD) brains.

Journal: Science advances

Authors' code: Zenodo 14172257 (CC-BY-4.0)

Status: code verified, 4 files readable, 2 matches

[21248] doi:10.1126/sciadv.adr4580 [paper, data]

Transcriptomic DN3 clock neuron subtypes regulate <i>Drosophila</i> sleep.

Journal: Science advances

Status: data only, 1 dataset cited

[21249] doi:10.1162/imag_a_00414 [paper, repository]

Word-selective EEG/MEG responses in the English language obtained with fast periodic visual stimulation (FPVS).

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: olafhauk/FPVS_WORDS (no license)

Status: code verified, 37 files readable, 5 matches

[21250] doi:10.1162/imag_a_00415 [paper]

Enhancing prefrontal modulation by phase-locking intermittent theta burst stimulation to a concurrent transcranial alternating current stimulation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[21251] doi:10.1162/imag_a_00416 [paper, repository]

Weak and unstable prediction of personality from the structural connectome.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ameliecr/SCandBigFive (no license), ameliecr/SC-calculation-pipeline (no license)

Status: code verified, 45 files readable, 1 match

[21252] doi:10.1162/imag_a_00417 [paper, repository]

Pseudo partition-encoded simultaneous multislab (pPRISM) for rapid, navigator-free submillimeter diffusion MRI with reduced slab-boundary signal loss.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: help.rc.unc.edu/getting-started-on-longleaf (no license)

Status: code verified

[21253] doi:10.1162/imag_a_00419 [paper]

Action observation and imitation: Corticospinal responses and hemispheric dominance.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[21254] doi:10.1162/imag_a_00420 [paper]

LSD flattens the hierarchy of directed information flow in fast whole-brain dynamics.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[21255] doi:10.1186/s13059-024-03467-5 [paper, repository]

SMORE: spatial motifs reveal patterns in cellular architecture of complex tissues.

Journal: Genome biology

Authors' code: zsamadi/SMORE (MIT), Zenodo 14510210 (MIT), Zenodo 5716532 (other-open), ewest11/bipolar-serial-saber-fish-analysis (no license)

Status: code verified, 282 files readable, 8 matches

[21256] doi:10.3390/jimaging11010008 [paper, repository]

Enhanced CATBraTS for Brain Tumour Semantic Segmentation.

Journal: Journal of imaging

Authors' code: RimElBadaoui/E-CATBraTS (no license)

Status: code verified, 2 files readable, 3 matches

[21257] doi:10.3390/s25010231 [paper, repository]

DHCT-GAN: Improving EEG Signal Quality with a Dual-Branch Hybrid CNN-Transformer Network.

Journal: Sensors (Basel, Switzerland)

Authors' code: ncclabsustech/EEGdenoiseNet (MIT)

Status: code verified, 67 files readable, 5 matches

Thursday, 2 January 2025 (60 papers, 23 on this page)

[21258] doi:10.1001/jamanetworkopen.2024.57069 [paper, repository]

Brain Function Outcomes of Recent and Lifetime Cannabis Use.

Journal: JAMA network open

Authors' code: OSF bv34e (no license)

Status: empty repository

[21259] doi:10.1002/lary.31979 [paper, repository]

Automatic Segmentation of Vestibular Schwannoma From MRI Using Two Cascaded Deep Learning Networks.

Journal: The Laryngoscope

Authors' code: mtec-tuhh/VSSegCode (no license)

Status: code verified, 38 files readable, 4 matches

[21260] doi:10.1016/j.artmed.2024.103063 [paper, repository]

A generalizable normative deep autoencoder for brain morphological anomaly detection: application to the multi-site StratiBip dataset on bipolar disorder in an external validation framework.

Journal: Artificial intelligence in medicine

Authors' code: Jfortin1/neuroCombat (MIT), inesws/neurocombat_pyClasse (MIT), inesws/Normative_AE (no license)

Status: code verified, 28 files readable, 18 matches

[21261] doi:10.1016/j.celrep.2024.115147 [paper]

Catecholaminergic dysfunction drives postural and locomotor deficits in a mouse model of spinal muscular atrophy.

Journal: Cell reports

Status: code on request

[21262] doi:10.1016/j.celrep.2024.115149 [paper, repository]

Single-nucleus and spatial landscape of the sub-ventricular zone in human glioblastoma.

Journal: Cell reports

Authors' code: BioinformaticsMUSC/PiccirilloLabEtAl_Glioblastoma (no license), Zenodo 14183518 (CC-BY-4.0), satijalab/seurat (other), plger/scDblFinder (GPL-3.0), immunogenomics/harmony (no license), broadinstitute/inferCNV (other), enblacar/SCpubr (GPL-3.0), neurorestore/Libra (MIT), saezlab/liana (GPL-3.0), YuLab-SMU/clusterProfiler (no license), scverse/squidpy (BSD-3-Clause), aerickso/SpatialInferCNV (no license), BayraktarLab/cell2location (Apache-2.0), theislab/ncem (BSD-3-Clause), aertslab/pySCENIC (GPL-3.0), velocyto-team/velocyto.py (BSD-2-Clause), theislab/scvelo (BSD-3-Clause), theislab/cellrank (BSD-3-Clause), msmdev/pyGPCCA (LGPL-3.0), KrishnaswamyLab/MAGIC (GPL-2.0), iontorrent/ts (GPL-2.0), pcingola/SnpEff (MIT)

Status: code verified, 4,021 files readable

[21263] doi:10.1016/j.isci.2024.111728 [paper, repository]

Unexpected events trigger task-independent signaling in VIP and excitatory neurons of mouse visual cortex.

Journal: iScience

Authors' code: Zenodo 14549288 (CC-BY-4.0), Zenodo 14548919 (CC-BY-4.0), simonerusso/multiscope_tca (no license), farznaj/multiscope_fn (no license)

Status: code verified, 161 files readable, 4 matches

[21264] doi:10.1016/j.isci.2024.111740 [paper, repository]

Tissue origin of endothelial cells determines immune system modulation and regulation of HIF-1α-, TGF-β-, and VEGF signaling.

Journal: iScience

Authors' code: lh3/minimap2 (MIT), stephens999/ashr (GPL-3.0)

Status: code verified, 105 files readable

[21265] doi:10.1021/acschemneuro.4c00526 [paper, repository]

Neurofilament Light Chain under the Lens of Structural Mass Spectrometry.

Journal: ACS chemical neuroscience

Authors' code: deagogishvili/NfL (MIT)

Status: code verified, 4 files readable

[21266] doi:10.1038/s41467-024-54478-6 [paper, repository]

Reduced adult stem cell fate specification led to eye reduction in cave planarians.

Journal: Nature communications

Authors' code: harvardinformatics/transcriptomeassemblytools (no license), beliveau-lab/OligoMiner (MIT), cooketho/make_hcr_probes (no license), doi:10.5061/dryad.4qrfj6qm0 (no license)

Status: code verified, 19 files readable, 1 match

[21267] doi:10.1038/s41467-024-54688-y [paper, repository]

Dynamic tracking of objects in the macaque dorsomedial frontal cortex.

Journal: Nature communications

Authors' code: jazlab/MentalPong (MIT)

Status: code verified, 94 files readable, 7 matches

[21268] doi:10.1038/s41467-024-54943-2 [paper, repository]

Distinct roles of dentate gyrus and medial entorhinal cortex inputs for phase precession and temporal correlations in the hippocampal CA3 area.

Journal: Nature communications

Authors' code: tortlab/phase-amplitude-coupling (no license), cleibold/CA3phaseprecession (LGPL-2.1), Zenodo 13907008 (CC-BY-4.0)

Status: code verified, 21 files readable, 5 matches

[21269] doi:10.1038/s41467-024-55022-2 [paper]

Soft Metalens for Broadband Ultrasonic Focusing through Aberration Layers.

Journal: Nature communications

Status: code on request

[21270] doi:10.1038/s41467-024-55056-6 [paper, repository]

Invasion of glioma cells through confined space requires membrane tension regulation and mechano-electrical coupling via Plexin-B2.

Journal: Nature communications

Authors' code: diasrodri/SimCellMD-1 (GPL-3.0), Zenodo 4977916 (afl-3.0)

Status: code verified, 26 files readable

[21271] doi:10.1038/s41467-024-55188-9 [paper, repository]

Dynamics of specialization in neural modules under resource constraints.

Journal: Nature communications

Authors' code: gabrielbena/community-of-agents (no license), GabrielBena/specialization-dynamics (no license)

Status: code verified, 66 files readable, 1 match

[21272] doi:10.1038/s41467-024-55269-9 [paper, repository]

Dynamic representation of appetitive and aversive stimuli in nucleus accumbens shell D1- and D2-medium spiny neurons.

Journal: Nature communications

Authors' code: rewave-lab (no license), Zenodo 13890127 (CC-BY-4.0), rewave-lab/2024-nature-commu-nac-msn-appetitive-aversive-dynamics (no license)

Status: code verified, 42 files readable, 8 matches

[21273] doi:10.1038/s41467-024-55293-9 [paper, repository]

Ultra robust negative differential resistance memristor for hardware neuron circuit implementation.

Journal: Nature communications

Authors' code: Zenodo 14203073 (CC-BY-4.0), yangbiao1127/fnsnn (no license)

Status: code verified, 4 files readable

[21274] doi:10.1038/s41467-024-55317-4 [paper, repository]

VTA projections to M1 are essential for reorganization of layer 2-3 network dynamics underlying motor learning.

Journal: Nature communications

Authors' code: codeocean:5135512 (no license)

Status: code found, still to be checked

[21275] doi:10.1038/s41467-024-55371-y [paper, repository]

Dietary amino acids promote glucagon-like hormone release to generate global calcium waves in adipose tissues in Drosophila.

Journal: Nature communications

Authors' code: Sy-Luo/HeLab_CalciumWave_Simulation_2024 (no license), Zenodo 14175603 (CC-BY-4.0)

Status: code verified, 16 files readable

[21276] doi:10.1038/s41467-024-55382-9 [paper, repository]

Blobby is a synaptic active zone assembly protein required for memory in Drosophila.

Journal: Nature communications

Authors' code: ngimber/BruchpilotSegmentation (no license)

Status: empty repository, 1 file readable

[21277] doi:10.1038/s41467-024-55395-4 [paper, data]

2D MoS₂-based reconfigurable analog hardware.

Journal: Nature communications

Status: code on request, 1 dataset cited

[21278] doi:10.1038/s41467-024-55406-4 [paper, repository]

Single-neuron spiking variability in hippocampus dynamically tracks sensory content during memory formation in humans.

Journal: Nature communications

Authors' code: Zenodo 13827812 (CC-BY-4.0), lndg/spikevar (MIT)

Status: code verified, 53 files readable, 5 matches

[21279] doi:10.1038/s41467-024-55409-1 [paper, repository]

Discretized representations in V1 predict suboptimal orientation discrimination.

Journal: Nature communications

Authors' code: Zenodo 8109858 (CC-BY-4.0)

Status: code verified

[21280] doi:10.1038/s41467-024-55412-6 [paper, data]

Interface-engineered non-volatile visible-blind photodetector for in-sensor computing.

Journal: Nature communications

Status: code on request, 1 dataset cited

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