Every paper, by date: page 96

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 96 of 200: 2 January 2025 to 1 January 2025.

Thursday, 2 January 2025 (60 papers, 37 on this page)

[21281] doi:10.1038/s41467-024-55444-y [paper, data]

E4F1 coordinates pyruvate metabolism and the activity of the elongator complex to ensure translation fidelity during brain development.

Journal: Nature communications

Status: data only, 1 dataset cited

[21282] doi:10.1038/s41467-024-55470-w [paper, data]

Synaptic signatures and disease vulnerabilities of layer 5 pyramidal neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[21283] doi:10.1038/s41467-024-55471-9 [paper, repository]

Structural insights into the mechanism of phosphate recognition and transport by XPR1.

Journal: Nature communications

Authors' code: yongwangcph/papers (no license)

Status: code verified, 47 files readable

[21284] doi:10.1038/s41467-024-55504-3 [paper, repository]

Generalized cue reactivity in rat dopamine neurons after opioids.

Journal: Nature communications

Authors' code: codeocean:0026587 (no license)

Status: code found, still to be checked

[21285] doi:10.1038/s41467-024-55516-z [paper, data]

Moisture-based green energy harvesting over 600 hours via photocatalysis-enhanced hydrovoltaic effect.

Journal: Nature communications

Status: data only, 1 dataset cited

[21286] doi:10.1038/s41467-024-55519-w [paper, repository]

In vivo spontaneous Ca<sup>2+</sup> activity in the pre-hearing mammalian cochlea.

Journal: Nature communications

Authors' code: Zenodo 3555620 (BSD-3-Clause), Marcotti-Lab/invivo-IHC-cochlea (GPL-3.0), napari/napari (BSD-3-Clause)

Status: code verified, 2,101 files readable, 5 matches

[21287] doi:10.1038/s41467-024-55554-7 [paper, repository]

Enhanced motivated behavior mediated by pharmacological targeting of the FGF14/Na<sub>v</sub>1.6 complex in nucleus accumbens neurons.

Journal: Nature communications

Authors' code: niehs.nih.gov/research/atniehs (no license)

Status: code verified

[21288] doi:10.1038/s41467-024-55563-6 [paper, repository]

A simple model for Behavioral Time Scale Synaptic Plasticity (BTSP) provides content addressable memory with binary synapses and one-shot learning.

Journal: Nature communications

Authors' code: yjwu17/simpleBTSP (no license), Zenodo 14133221 (CC-BY-4.0)

Status: code verified, 20 files readable

[21289] doi:10.1038/s41467-024-55576-1 [paper, repository]

Sensory quiescence induces a cell-non-autonomous integrated stress response curbed by condensate formation of the ATF4 and XRP1 effectors.

Journal: Nature communications

Authors' code: mz27ethio/Ethoscope-Kramerlab (no license)

Status: empty repository, 1 file readable

[21290] doi:10.1038/s41467-024-55609-9 [paper, repository]

Noradrenergic inputs from the locus coeruleus to anterior piriform cortex and the olfactory bulb modulate olfactory outputs.

Journal: Nature communications

Authors' code: codeocean:7909289 (no license)

Status: code found, still to be checked

[21291] doi:10.1038/s41467-024-55644-6 [paper, repository]

Dopaminergic signaling to ventral striatum neurons initiates sniffing behavior.

Journal: Nature communications

Authors' code: markdregan/K-Nearest-Neighbors-with-Dynamic-Time-Warping (no license), dWwesson/SniffClassifier (no license)

Status: code verified, 5 files readable, 3 matches

[21292] doi:10.1038/s41467-024-55674-0 [paper, data]

Glia detect and transiently protect against dendrite substructure disruption in C. elegans.

Journal: Nature communications

Status: data only, 3 datasets cited

[21293] doi:10.1038/s41467-024-55678-w [paper, data]

Modulation of glymphatic system by visual circuit activation alleviates memory impairment and apathy in a mouse model of Alzheimer's disease.

Journal: Nature communications

Status: data only, 1 dataset cited

[21294] doi:10.1038/s41467-024-55749-y [paper, data]

Recurrent models of orientation selectivity enable robust early-vision processing in mixed-signal neuromorphic hardware.

Journal: Nature communications

Status: data only, 1 dataset cited

[21295] doi:10.1038/s41598-024-80546-4 [paper, data]

The brain prioritizes the basic level of object category abstraction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21296] doi:10.1038/s41598-024-82536-y [paper, repository]

Spike reliability is cell type specific and shapes excitation and inhibition in the cortex.

Journal: Scientific reports

Authors' code: SimoneRusso/ReliabilityAcrossCelltypes (no license)

Status: code verified, 6 files readable, 1 match

[21297] doi:10.1038/s41598-024-83432-1 [paper]

Temporal ablation of the ciliary protein IFT88 alters normal brainwave patterns.

Journal: Scientific reports

Status: code on request

[21298] doi:10.1038/s41598-024-83862-x [paper, repository]

TILTomorrow today: dynamic factors predicting changes in intracranial pressure treatment intensity after traumatic brain injury.

Journal: Scientific reports

Authors' code: sbhattacharyay/TILTomorrow (MIT), Zenodo 11060743 (CC-BY-4.0)

Status: code verified, 90 files readable, 6 matches

[21299] doi:10.1038/s41598-024-84188-4 [paper, repository]

Sex differences in aggression and its neural substrate in a cichlid fish.

Journal: Scientific reports

Authors' code: AlwardLab (no license)

Status: code verified

[21300] doi:10.1038/s41598-024-84530-w [paper, repository]

Brain-model neural similarity reveals abstractive summarization performance.

Journal: Scientific reports

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[21301] doi:10.1038/s44220-024-00349-4 [paper, repository]

A multimodal neural signature of face processing in autism within the fusiform gyrus.

Journal: Nature. Mental health

Authors' code: amarquand/PCNtoolkit (GPL-3.0), allera/llera_elife_2019_1 (GPL-2.0), andersonwinkler/PermCCA (GPL-3.0)

Status: code verified, 205 files readable, 1 match

[21302] doi:10.1038/s44319-024-00286-4 [paper]

Distinct mechanisms control the specific synaptic functions of Neuroligin 1 and Neuroligin 2.

Journal: EMBO reports

Status: data only

[21303] doi:10.1038/s44320-024-00074-1 [paper, repository]

High order expression dependencies finely resolve cryptic states and subtypes in single cell data.

Journal: Molecular systems biology

Authors' code: ajnsm/stator (GPL-3.0), scverse/scanpy (BSD-3-Clause), YuelinYao/MFIs (GPL-3.0), ajnsm/nf_tl_pipeline (GPL-3.0), yanailab/PanCancer (no license)

Status: code verified, 170 files readable, 16 matches

[21304] doi:10.1073/pnas.2408799121 [paper, repository]

A phase transition in diffusion models reveals the hierarchical nature of data.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: pcsl-epfl/forward-backward-diffusion (MIT)

Status: code verified, 23 files readable

[21305] doi:10.1111/eva.70066 [paper, data]

Genomic Introgression Between Critically Endangered and Stable Species of Darwin's Tree Finches on the Galapagos Islands.

Journal: Evolutionary applications

Status: data only, 1 dataset cited

[21306] doi:10.1159/000543341 [paper, data]

Neuroimaging-Based Responses to Blood Pressure Augmentation in Acute Ischaemic Stroke: A Systematic Review.

Journal: Biomedicine hub

Status: data only, 1 dataset cited

[21307] doi:10.1162/imag_a_00406 [paper, repository]

Awake rodent fMRI: Gradient-echo echo planar imaging versus compressed-sensing fast low-angle shot.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: neuroimlabpitt/Olfactory-fMRI (no license)

Status: empty repository

[21308] doi:10.1162/imag_a_00407 [paper, repository]

Neural signatures of word learning during adult-child interactions.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: developmentaldynamicslab/MRI-NIRS_Pipeline (no license), samhforbes/digitizeR (MIT)

Status: code verified, 213 files readable, 2 matches

[21309] doi:10.1162/imag_a_00408 [paper, repository]

A hierarchical Bayesian brain parcellation framework for fusion of functional imaging datasets.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DiedrichsenLab/Functional_Fusion (no license), DiedrichsenLab/HierarchBayesParcel (MIT), DiedrichsenLab/FusionModel (MIT)

Status: code verified, 164 files readable, 9 matches

[21310] doi:10.1162/imag_a_00409 [paper, repository]

Longitudinal reproducibility of brain and spinal cord quantitative MRI biomarkers.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: courtois-neuromod/anat-processing (MIT), scilus/tractoflow (other), hub.docker.com/repository/docker (no license), courtois-neuromod.github.io/anat-processing-paper (no license), courtois-neuromod/anat-processing-paper (no license)

Status: code verified, 8 files readable, 7 matches

[21311] doi:10.1162/imag_a_00410 [paper, repository]

Inferring laminar origins of MEG signals with optically pumped magnetometers (OPMs): A simulation study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: tierneytim/OPM (GPL-2.0), jbonaiuto/laminar_sim (GPL-3.0), sashel/laminar_sim_opm (GPL-3.0)

Status: code verified, 105 files readable, 11 matches

[21312] doi:10.1162/imag_a_00411 [paper, repository]

Comparing reliability-based measures of functional connectivity between movie and rest: An ROI-based approach.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: tvanderwal/roi_reliability_shearer (no license)

Status: code verified, 37 files readable, 1 match

[21313] doi:10.1162/imag_a_00412 [paper, repository]

Real-time computation of brain E-field for enhanced transcranial magnetic stimulation neuronavigation and optimization.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: NahianHasan/Real-Time-TMS (CC-BY-4.0), luisgo/TMS_Efield_Solvers (no license)

Status: code verified, 971 files readable, 3 matches

[21314] doi:10.1162/imag_a_00413 [paper, repository]

Mapping multi-modal dynamic network activity during naturalistic music listening.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: fabsarah/Multi-Modal-Music-Mapping (no license)

Status: empty repository, 1 file readable

[21315] doi:10.1186/s13059-024-03464-8 [paper, repository]

Spatiotemporal dynamics of early oogenesis in pigs.

Journal: Genome biology

Authors' code: Flyingcattle/Pig_Spatial (no license), Zenodo 14286941 (CC-BY-4.0), Zenodo 14286998 (CC-BY-4.0)

Status: code verified, 18 files readable, 13 matches

[21316] doi:10.3390/cancers17010121 [paper, data]

Advanced Brain Tumor Classification in MR Images Using Transfer Learning and Pre-Trained Deep CNN Models.

Journal: Cancers

Status: data only, 1 dataset cited

[21317] doi:10.3390/diagnostics15010084 [paper, data]

Epilepsy Diagnosis from EEG Signals Using Continuous Wavelet Transform-Based Depthwise Convolutional Neural Network Model.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Wednesday, 1 January 2025 (249 papers, 187 on this page)

[21318] doi:10.1002/brb3.70219 [paper, data]

Diagnosis of Schizophrenia and Its Subtypes Using MRI and Machine Learning.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[21319] doi:10.1002/brb3.70231 [paper, data]

Age and Sex-Related Differences in Neuroprotective Effects of Cardiovascular Endurance on Cortical Thickness and Brain Volume in Adults Across Age.

Journal: Brain and behavior

Status: data only, 2 datasets cited

[21320] doi:10.1002/brb3.70250 [paper, repository]

Investigating Neurometabolite Changes in Response to Median Nerve Stimulation.

Journal: Brain and behavior

Authors' code: OSF c6pwa (no license)

Status: code verified, 2 files readable

[21321] doi:10.1002/brb3.70255 [paper, repository]

Longitudinal Assessment of Abnormal Cortical Folding in Fetuses and Neonates With Isolated Non-Severe Ventriculomegaly.

Journal: Brain and behavior

Authors' code: urrand/perinatal-pipeline (no license), urrand/LongitudinalAnalysis (no license)

Status: code verified, 18 files readable, 4 matches

[21322] doi:10.1002/cpz1.70090 [paper, repository]

Miniscope Imaging of Nucleus Accumbens Neural Activity in Freely Behaving Rats: Virus Injection, Gradient Index Lens Implantation, Recording Strategies, and Analytical Methods.

Journal: Current protocols

Authors' code: njbeacher/njbeacher.github.io (MIT)

Status: empty repository, 2 files readable

[21323] doi:10.1002/dad2.70090 [paper, data]

Machine learning to discover factors predicting volume of white matter hyperintensities: Insights from the UK Biobank.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: data only, 1 dataset cited

[21324] doi:10.1002/dev.70009 [paper, data]

Neural Correlates of Emotion Regulation and Associations With Disordered Eating During Preadolescence.

Journal: Developmental psychobiology

Status: data only, 1 dataset cited

[21325] doi:10.1002/hbm.26794 [paper, repository]

Change in transverse relaxation rates (R<sub>2</sub>) and change in cognition for older African Americans.

Journal: Human brain mapping

Authors' code: radc.rush.edu (no license)

Status: code found, still to be checked

[21326] doi:10.1002/hbm.70045 [paper, repository]

Human Auditory-Motor Networks Show Frequency-Specific Phase-Based Coupling in Resting-State MEG.

Journal: Human brain mapping

Authors' code: OscarBedford/OMEGA_study (no license)

Status: code verified, 2 files readable

[21327] doi:10.1002/hbm.70053 [paper, repository]

Predicting Antidepressant Treatment Response From Cortical Structure on MRI: A Mega-Analysis From the ENIGMA-MDD Working Group.

Journal: Human brain mapping

Authors' code: depredict/enigma (Apache-2.0)

Status: code verified, 11 files readable, 12 matches

[21328] doi:10.1002/hbm.70079 [paper, data]

Patterns of Cerebellar-Cortical Structural Covariance Mirror Anatomical Connectivity of Sensorimotor and Cognitive Networks.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[21329] doi:10.1002/hbm.70084 [paper, repository]

Altered Connectome Topology in Newborns at Risk for Cognitive Developmental Delay: A Cross-Etiologic Study.

Journal: Human brain mapping

Authors' code: annspe/connectome_pipeline (no license)

Status: code verified, 33 files readable, 7 matches

[21330] doi:10.1002/hbm.70094 [paper, repository]

Balancing Data Quality and Bias: Investigating Functional Connectivity Exclusions in the Adolescent Brain Cognitive Development℠ (ABCD Study) Across Quality Control Pathways.

Journal: Human brain mapping

Authors' code: OSF 57xer (no license)

Status: code verified, 19 files readable, 8 matches

[21331] doi:10.1002/hbm.70119 [paper]

Subtypes of Insomnia Disorder Identified by Cortical Morphometric Similarity Network.

Journal: Human brain mapping

Status: code on request

[21332] doi:10.1002/hbm.70122 [paper, repository]

Real-Time Tractography-Assisted Neuronavigation for Transcranial Magnetic Stimulation.

Journal: Human brain mapping

Authors' code: dmritrekker.github.io (no license), invesalius.github.io (no license), tractometer.org/ismrm2015/tools (no license)

Status: code verified

[21333] doi:10.1002/hbm.70123 [paper, repository]

Connectome-Based Predictive Modeling of Trait Mindfulness.

Journal: Human brain mapping

Authors' code: DynamicBrainMind/CPM_CONN (no license), OSF tz86b (no license)

Status: code verified, 15 files readable, 3 matches

[21334] doi:10.1002/hbm.70129 [paper]

Energy of Functional Brain States Correlates With Cognition in Adolescent-Onset Schizophrenia and Healthy Persons.

Journal: Human brain mapping

Status: code on request

[21335] doi:10.1002/hipo.23651 [paper, repository]

Sparsity of Population Activity in the Hippocampus Is Task-Invariant Across the Trisynaptic Circuit and Dorsoventral Axis.

Journal: Hippocampus

Authors' code: jquinnlee/HPCArc (no license)

Status: code verified, 1 file readable, 2 matches

[21336] doi:10.1002/hipo.23678 [paper, repository]

Transcranial Direct Current Stimulation Over Bilateral Temporal Lobes Modulates Hippocampal-Occipital Functional Connectivity and Visual Short-Term Memory Precision.

Journal: Hippocampus

Authors' code: OSF ktmy6 (no license)

Status: code verified, 1 file readable

[21337] doi:10.1002/jev2.70038 [paper, repository]

Breast Cancer-Derived Extracellular Vesicles Modulate the Cytoplasmic and Cytoskeletal Dynamics of Blood-Brain Barrier Endothelial Cells.

Journal: Journal of extracellular vesicles

Authors' code: kleelab-bch/Morphology-Motility-Analysis (MIT), Sbusatto/Global-Proteomic-Analysis-of-murine-cerebral-microvessels (MIT)

Status: code verified, 7 files readable, 5 matches

[21338] doi:10.1002/nbm.5299 [paper, repository]

Macromolecule Modelling for Improved Metabolite Quantification Using Short Echo Time Brain <sup>1</sup>H-MRS at 3 T and 7 T: The PRaMM Model.

Journal: NMR in biomedicine

Authors' code: 0rC0/PRaMM (MIT)

Status: code verified, 17 files readable, 3 matches

[21339] doi:10.1002/nbm.5308 [paper, repository]

The Road to a Realistic 3D Model for Estimating R<sub>2</sub> and R<sub>2</sub>* Relaxation Versus Gd-DTPA Concentration in Whole Blood and Brain Tumor Vasculature.

Journal: NMR in biomedicine

Authors' code: nifm-gin/MrVox2D (BSD-3-Clause)

Status: code verified, 29 files readable, 1 match

[21340] doi:10.1016/j.crmeth.2024.100961 [paper]

Selective activation of mesoscale functional circuits via multichannel infrared stimulation of cortical columns in ultra-high-field 7T MRI.

Journal: Cell reports methods

Status: code on request

[21341] doi:10.1016/j.ijchp.2025.100551 [paper, repository]

An electroencephalography connectome predictive model of craving for methamphetamine.

Journal: International journal of clinical and health psychology : IJCHP

Authors' code: bioimagesuiteweb.github.io/webapp (no license), bingo1218/CPM_EEG_craving (no license)

Status: code verified, 15 files readable, 8 matches

[21342] doi:10.1016/j.ijchp.2025.100557 [paper, repository]

Multimodal quantitative magnetic resonance imaging alterations of the basal ganglia circuit underlie the severity of bulimia nervosa.

Journal: International journal of clinical and health psychology : IJCHP

Authors' code: guoweiwuorgin/the_basal_ganglia_circuit_underlie_the_severity_of_BN (no license)

Status: code verified, 4 files readable, 1 match

[21343] doi:10.1016/j.isci.2024.111718 [paper, repository]

Augmenting flexibility: mutual inhibition between inhibitory neurons expands functional diversity.

Journal: iScience

Authors' code: L24358/CRIREL (MIT)

Status: code verified, 32 files readable

[21344] doi:10.1016/j.isci.2024.111721 [paper]

Segregated input to thalamic areas that project differently to core and shell auditory cortical fields.

Journal: iScience

Status: code on request

[21345] doi:10.1016/j.neuroimage.2024.120998 [paper, repository]

Fast EEG/MEG BEM-based forward problem solution for high-resolution head models.

Journal: NeuroImage

Authors' code: wiwartman/BEM-FMM-with-B-Refinement-for-EEG (GPL-3.0)

Status: code verified, 253 files readable, 7 matches

[21346] doi:10.1016/j.tjpad.2024.100037 [paper, data]

Microstructural white matter injury contributes to cognitive decline: Besides amyloid and tau.

Journal: The journal of prevention of Alzheimer's disease

Status: data only, 1 dataset cited

[21347] doi:10.1016/j.xgen.2024.100739 [paper, repository]

CSI-GEP: A GPU-based unsupervised machine learning approach for recovering gene expression programs in atlas-scale single-cell RNA-seq data.

Journal: Cell genomics

Authors' code: alleninstitute/abc_atlas_access (BSD-2-Clause), OSF tknm2 (no license), welch-lab/liger (GPL-3.0), broadinstitute/SignatureAnalyzer-GPU (BSD-3-Clause), scverse/scvi-tools (BSD-3-Clause), bowang-lab/scGPT (MIT)

Status: code verified, 524 files readable, 10 matches

[21348] doi:10.1016/j.xgen.2024.100740 [paper]

The trait-specific timing of accelerated genomic change in the human lineage.

Journal: Cell genomics

Status: code on request

[21349] doi:10.1016/j.ymthe.2024.12.040 [paper, data]

Hyperactive delta isoform of PI3 kinase enables long-distance regeneration of adult rat corticospinal tract.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 2 datasets cited

[21350] doi:10.1038/s41586-024-08337-5 [paper, repository]

Structural diversity of axonemes across mammalian motile cilia.

Journal: Nature

Authors' code: rui--zhang/Doublet (no license)

Status: code verified, 9 files readable

[21351] doi:10.1038/s41586-024-08341-9 [paper, repository]

Dysregulation of mTOR signalling is a converging mechanism in lissencephaly.

Journal: Nature

Authors' code: danliangunc/PIDD1-lissencephaly (no license)

Status: code verified, 58 files readable, 8 matches

[21352] doi:10.1038/s41586-024-08356-2 [paper, repository]

Gliomagenesis mimics an injury response orchestrated by neural crest-like cells.

Journal: Nature

Authors' code: Zenodo 22040374 (MIT)

Status: code verified, 12 files readable

[21353] doi:10.1049/syb2.70025 [paper, data]

Integration of Single-Cell RNA and Bulk RNA Sequencing Reveals Cellular Heterogeneity and Identifies Survival-Associated Regulatory Networks in Glioblastoma.

Journal: IET systems biology

Status: data only, 1 dataset cited

[21354] doi:10.1093/abm/kaaf050 [paper, repository]

Daily, prospective associations between sleep architecture and affect: insights from Bayesian multilevel compositional data analysis.

Journal: Annals of behavioral medicine : a publication of the Society of Behavioral Medicine

Authors' code: florale/multilevelcoda-sleep-stages-affect (no license)

Status: code verified, 12 files readable, 4 matches

[21355] doi:10.1093/brain/awae195 [paper, repository]

Four dimensions of naturalistic language production in aphasia after stroke.

Journal: Brain : a journal of neurology

Authors' code: mcasilio/neuroaprocsa (no license)

Status: code verified, 1 file readable

[21356] doi:10.1093/brain/awae198 [paper, repository]

Childhood adiposity underlies numerous adult brain traits commonly attributed to midlife obesity.

Journal: Brain : a journal of neurology

Authors' code: scottchiesa/lifecourse-MR-brain (no license)

Status: code verified, 15 files readable, 1 match

[21357] doi:10.1093/brain/awae202 [paper, repository]

Distinct transcriptional alterations distinguish Lewy body disease from Alzheimer's disease.

Journal: Brain : a journal of neurology

Authors' code: fryerlab/LBD_CWOW (no license)

Status: code verified, 13 files readable, 14 matches

[21358] doi:10.1093/brain/awae235 [paper, repository]

Dysfunction of the magnocellular subdivision of the visual thalamus in developmental dyslexia.

Journal: Brain : a journal of neurology

Authors' code: OSF bge75 (no license)

Status: code verified, 14 files readable, 2 matches

[21359] doi:10.1093/cei/uxae115 [paper, data]

Proteomic analysis reveals dysregulation of peripheral blood neutrophils in patients with Multiple Sclerosis.

Journal: Clinical and experimental immunology

Status: data only, 1 dataset cited

[21360] doi:10.1093/chemse/bjaf007 [paper, repository]

Perceptual differences in olfactory fat discrimination are not detected in neural activation.

Journal: Chemical senses

Authors' code: OSF nxfqz (no license)

Status: empty repository

[21361] doi:10.1093/chemse/bjaf012 [paper, repository]

Sensory responses of olfactory and vomeronasal neurons in does are influenced by buck odors and their reproductive status.

Journal: Chemical senses

Authors' code: ETrives/calipR (GPL-3.0)

Status: code verified, 25 files readable, 3 matches

[21362] doi:10.1093/chemse/bjaf021 [paper, data]

A deep learning and digital archaeology approach for mosquito repellent discovery.

Journal: Chemical senses

Status: data only, 1 dataset cited

[21363] doi:10.1093/chemse/bjaf031 [paper, repository]

Paired and solitary ionocytes in the zebrafish olfactory epithelium.

Journal: Chemical senses

Authors' code: Zenodo 10534540 (Apache-2.0)

Status: code verified, 30 files readable, 1 match

[21364] doi:10.1093/chemse/bjaf035 [paper, data]

Amino acids activate parallel chemosensory pathways in Drosophila.

Journal: Chemical senses

Status: data only, 1 dataset cited

[21365] doi:10.1093/femspd/ftaf003 [paper, data]

Isolate-specific rat brain transcriptional responses to rat lungworm (Angiostrongylus cantonensis).

Journal: Pathogens and disease

Status: data only, 1 dataset cited

[21366] doi:10.1093/g3journal/jkae254 [paper, repository]

Chromosome-level reference genome for the Jonah crab, Cancer borealis.

Journal: G3 (Bethesda, Md.)

Authors' code: jmpolinski/Jonah-Crab-Genome (no license), aidenlab/Juicebox (MIT), mcfrith/last (GPL-3.0)

Status: code verified, 452 files readable, 7 matches

[21367] doi:10.1093/gigascience/giae098 [paper, repository]

An analysis of performance bottlenecks in MRI preprocessing.

Journal: GigaScience

Authors' code: singularityhub/docker2singularity (MIT), insightsoftwareconsortium/itk (Apache-2.0), mathdugre/mri-bottleneck (GPL-3.0), Zenodo 10987491 (CC0-1.0), hub.docker.com/r/mathdugre (no license), swh:/browse/snapshot/c9d107ac9c52f6baa8dbf02675a84861dd50f407/directory/ (no license)

Status: code verified, 2,034 files readable

[21368] doi:10.1093/gigascience/giae103 [paper, repository]

Unveiling patterns in spatial transcriptomics data: a novel approach utilizing graph attention autoencoder and multiscale deep subspace clustering network.

Journal: GigaScience

Authors' code: plhhnu/STMSGAL (MIT)

Status: code verified, 49 files readable, 13 matches

[21369] doi:10.1093/gigascience/giae119 [paper, repository]

Opaque ontology: neuroimaging classification of ICD-10 diagnostic groups in the UK Biobank.

Journal: GigaScience

Authors' code: tyo8/wapiaw3 (no license)

Status: dead link

[21370] doi:10.1093/gigascience/giaf010 [paper, repository]

Cerebellocerebral connectivity predicts body mass index: a new open-source Python-based framework for connectome-based predictive modeling.

Journal: GigaScience

Authors' code: tobac/hcp-suite (GPL-3.0)

Status: code verified, 24 files readable, 3 matches

[21371] doi:10.1093/gigascience/giaf034 [paper, repository]

Network-based anomaly detection algorithm reveals proteins with major roles in human tissues.

Journal: GigaScience

Authors' code: gloooryyt/oddball_py3 (no license), data4goodlab/wgand (CC0-1.0), swh:swh:1:snp:8b101aad101c594b30c1e194a0868e789d744cde (no license)

Status: code verified, 16 files readable, 3 matches

[21372] doi:10.1093/gigascience/giaf053 [paper, repository]

Cross-modal contrastive learning decodes developmental regulatory features through chromatin potential analysis.

Journal: GigaScience

Authors' code: melobio/attune (GPL-3.0)

Status: code verified, 37 files readable, 17 matches

[21373] doi:10.1093/gigascience/giaf060 [paper, repository]

A Case for estradiol: younger brains in women with earlier menarche and later menopause.

Journal: GigaScience

Authors' code: christiangaser/brainage-ukbiobank (GPL-3.0)

Status: code verified, 5 files readable, 2 matches

[21374] doi:10.1093/gigascience/giaf082 [paper, repository]

Group-specific discriminant analysis enhances detection of sex differences in brain functional network lateralization.

Journal: GigaScience

Authors' code: shuo-zhou/GSDA-Lateralization (MIT), swh:swh:1:snp:495f818df0e3c6d9ac1898b1cc14ec0ea396d98a (no license)

Status: code verified, 61 files readable, 6 matches

[21375] doi:10.1093/gigascience/giaf091 [paper, repository]

High-precision machine learning identifies a reproducible functional connectivity signature of autism spectrum diagnosis in a subset of individuals.

Journal: GigaScience

Authors' code: SIMEXP/autism-signature (MIT), dashqc-fmri.readthedocs.io (no license), swh:swh:1:dir:f058cc374dc788be65d4d60c920770cef330d6ab (no license)

Status: code verified, 28 files readable, 2 matches

[21376] doi:10.1093/gigascience/giaf092 [paper, repository]

HeteroMRI: Robust white matter abnormality classification across multi-scanner MRI data.

Journal: GigaScience

Authors' code: ul-mds/FlexiMRIprep (GPL-3.0), ul-mds/HeteroMRI (GPL-3.0), swh:/browse/snapshot/defd0e13d67d336ca96031dd434ea4779bc1ec2a/directory/ (no license)

Status: code verified, 24 files readable, 5 matches

[21377] doi:10.1093/gigascience/giaf093 [paper, repository]

The Open Pediatric Cancer Project.

Journal: GigaScience

Authors' code: d3b-center/OpenPedCan-analysis (CC0-1.0), Zenodo 15750097 (CC-BY-4.0), AlexsLemonade/OpenPBTA-analysis (CC-BY-4.0), Zenodo 13152566 (CC-BY-4.0), Zenodo 4036788 (other-open), Zenodo 6473912 (CC-BY-4.0), d3b-center/annofusedata (other), d3b-center/annofuse (other)

Status: code verified, 804 files readable, 40 matches

[21378] doi:10.1093/gigascience/giaf116 [paper, repository]

DUNE: a versatile neuroimaging encoder captures brain complexity across 3 major diseases: cancer, dementia, and schizophrenia.

Journal: GigaScience

Authors' code: gevaertlab/DUNE (no license), figshare 29538347 (CC0-1.0)

Status: code verified, 1 file readable, 5 matches

[21379] doi:10.1093/gigascience/giaf146 [paper, repository]

Segmentation-based quality control of structural MRI using the CAT12 toolbox.

Journal: GigaScience

Authors' code: ChristianGaser/cat12 (GPL-2.0)

Status: code verified, 486 files readable, 11 matches

[21380] doi:10.1093/hmg/ddae168 [paper, data]

Brain multi-omic Mendelian randomisation to identify novel drug targets for gliomagenesis.

Journal: Human molecular genetics

Status: data only, 1 dataset cited

[21381] doi:10.1093/jisesa/ieaf012 [paper, repository]

The conserved IR75 subfamily mediates carboxylic acid detection in insects of public health and agricultural importance.

Journal: Journal of insect science (Online)

Authors' code: sites.baylor.edu/hunter_hennig1/exon-map-generator (no license)

Status: code verified

[21382] doi:10.1093/jnen/nlae108 [paper, data]

Multidimensional analysis of matched primary and recurrent glioblastoma identifies contributors to tumor recurrence influencing time to relapse.

Journal: Journal of neuropathology and experimental neurology

Status: data only, 1 dataset cited

[21383] doi:10.1093/nar/gkae1031 [paper, repository]

iDog: a multi-omics resource for canids study.

Journal: Nucleic acids research

Authors' code: Br1anChou/idog (MIT), figshare 27238002 (CC-BY-4.0)

Status: code verified, 39 files readable

[21384] doi:10.1093/nar/gkae1122 [paper, repository]

Comprehensive whole-genome sequencing reveals origins of mutational signatures associated with aging, mismatch repair deficiency and temozolomide chemotherapy.

Journal: Nucleic acids research

Authors' code: xown1048/TMZsig (no license), figshare 27301404 (CC-BY-4.0)

Status: code verified, 105 files readable, 2 matches

[21385] doi:10.1093/nar/gkae1320 [paper, repository]

Single-nucleotide-resolution genomic maps of O6-methylguanine from the glioblastoma drug temozolomide.

Journal: Nucleic acids research

Authors' code: gitlab.ethz.ch/eth_toxlab/o6meg-seq (MIT), Zenodo 10518965 (CC-BY-4.0)

Status: code verified, 119 files readable, 6 matches

[21386] doi:10.1093/nar/gkae821 [paper, repository]

scMMO-atlas: a single cell multimodal omics atlas and portal for exploring fine cell heterogeneity and cell dynamics.

Journal: Nucleic acids research

Authors' code: Zenodo 13710871 (CC-BY-4.0), chengwenwen1/scmmo-atlas (no license)

Status: code verified, 20 files readable, 8 matches

[21387] doi:10.1093/neuonc/noae173 [paper, repository]

Multimodal deep learning improves recurrence risk prediction in pediatric low-grade gliomas.

Journal: Neuro-oncology

Authors' code: AIM-KannLab/nnUnet_Features (MIT), aim-kannlab/plgg_3year_efs (Apache-2.0)

Status: code verified, 17 files readable, 3 matches

[21388] doi:10.1093/noajnl/vdaf042 [paper]

Distinct gut microbiota composition in pediatric patients with central nervous system (CNS) tumors: A comparative study.

Journal: Neuro-oncology advances

Status: data only

[21389] doi:10.1093/noajnl/vdaf079 [paper, repository]

MultiCubeNet: Multitask deep learning for molecular subtyping and prognostic prediction in gliomas.

Journal: Neuro-oncology advances

Authors' code: OnekeyAI-Platform/MultiCubeNet (no license)

Status: code verified, 6 files readable, 1 match

[21390] doi:10.1093/noajnl/vdaf094 [paper]

Risk factors, predictive models, and general work ability trajectory in patients with glioma.

Journal: Neuro-oncology advances

Status: code on request

[21391] doi:10.1093/noajnl/vdaf099 [paper, data]

Dual targeting of <i>CD155</i>/<i>TIGIT</i> and <i>PD-L1</i>/<i>PD-1</i> immune checkpoints potentiates NK cell-mediated cytotoxicity in medulloblastoma.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[21392] doi:10.1093/noajnl/vdaf100 [paper]

Radiomics based on MRI and <sup>18</sup>F-FDG PET/CT predicts response to EGFR-TKI therapy based on primary NSCLC and brain metastasis.

Journal: Neuro-oncology advances

Status: code on request

[21393] doi:10.1093/noajnl/vdaf105 [paper, data]

Long-term psychological and neurological outcomes among people with a history of non-malignant meningioma in the UK Biobank cohort.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[21394] doi:10.1093/noajnl/vdaf134 [paper, repository]

Seizure characteristics and outcomes in patients with pleomorphic xanthoastrocytoma.

Journal: Neuro-oncology advances

Authors' code: danzh07/pxa (MIT)

Status: code verified, 6 files readable, 8 matches

[21395] doi:10.1093/noajnl/vdaf145 [paper, repository]

Deep learning volumetrics reveal distinct clinical trajectories for pediatric low-grade gliomas under surveillance: A multicenter study.

Journal: Neuro-oncology advances

Authors' code: jc-cp/mri-longitudinal-analysis (MIT)

Status: code verified, 54 files readable, 14 matches

[21396] doi:10.1093/noajnl/vdaf168 [paper, repository]

The relationship between deviant brain activity and executive functioning in glioma patients.

Journal: Neuro-oncology advances

Authors' code: multinetlab-amsterdam/projects (MIT)

Status: code verified, 83 files readable, 15 matches

[21397] doi:10.1093/noajnl/vdaf215 [paper, data]

Head-to-head preclinical treatment design prioritizes promising therapies for neurofibromatosis type 1 optic glioma clinical translation.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[21398] doi:10.1093/scan/nsae066 [paper, repository]

Neural dynamics of social verb processing: an MEG study.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF j6r2t (no license)

Status: code verified, 2 files readable, 1 match

[21399] doi:10.1093/scan/nsaf001 [paper, repository]

Neural mechanisms underlying the interactive exchange of facial emotional expressions.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF ghdrm (no license)

Status: code verified, 16 files readable, 8 matches

[21400] doi:10.1093/scan/nsaf006 [paper, repository]

ERP correlates of agency processing in joint action.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF vp9hf (no license)

Status: code verified, 11 files readable, 1 match

[21401] doi:10.1093/scan/nsaf052 [paper]

Targeting the dorsolateral prefrontal cortex to enhance memory control: divergent effects on social and non-social memories.

Journal: Social cognitive and affective neuroscience

Status: code on request

[21402] doi:10.1093/scan/nsaf055 [paper, repository]

Segregation of three resting-state brain networks predicts reappraisal success across the lifespan.

Journal: Social cognitive and affective neuroscience

Authors' code: wiglab/system-segregation-and-graph-tools (MIT)

Status: code verified, 19 files readable, 1 match

[21403] doi:10.1093/scan/nsaf057 [paper, repository]

Social brain responses to natural scene images of social interactions.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF sy6u2 (no license)

Status: code verified, 19 files readable, 2 matches

[21404] doi:10.1093/scan/nsaf058 [paper, repository]

Multi-timepoint pattern analysis: improving classification with neural timeseries data.

Journal: Social cognitive and affective neuroscience

Authors' code: abinnquist/fnirspreprocessing (no license)

Status: code verified, 66 files readable, 2 matches

[21405] doi:10.1093/scan/nsaf060 [paper, repository]

Distinct fNIRS Inter-Brain Coupling Patterns for Cooperation versus Competition in a Tennis Game.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF bh2m5 (no license)

Status: code verified, 7 files readable

[21406] doi:10.1093/scan/nsaf062 [paper, data]

Differential effects of social feedback valence and self-relevance on brain responses and behaviour.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21407] doi:10.1093/scan/nsaf065 [paper, data]

Transcranial direct current stimulation alleviates the negative impact of immediate and chronic social exclusion on intertemporal decision-making.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21408] doi:10.1093/scan/nsaf069 [paper, repository]

Phase-synchronized brain connectivity during emotion regulation: attachment as a moderator.

Journal: Social cognitive and affective neuroscience

Authors' code: domic-siede/EEG_Connectivity_ER_Study (no license)

Status: code verified, 4 files readable, 4 matches

[21409] doi:10.1093/scan/nsaf070 [paper]

Love in the time of Zoom: how intimacy modulates brain and behaviour synchrony in face-to-face versus video communication.

Journal: Social cognitive and affective neuroscience

Status: code on request

[21410] doi:10.1093/scan/nsaf071 [paper]

Neural correlates of evaluative bias against artificial intelligence-labeled versus human-labeled artworks.

Journal: Social cognitive and affective neuroscience

Status: code on request

[21411] doi:10.1093/scan/nsaf078 [paper, data]

Spatio-temporal activity of brain electrical sources during processing of abstract social concepts.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21412] doi:10.1093/scan/nsaf079 [paper, repository]

Neural correlates of social and thematic semantics in autistic and non-autistic adults.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 5xasw (no license)

Status: code verified, 20 files readable, 12 matches

[21413] doi:10.1093/scan/nsaf080 [paper, repository]

Intertemporal meditation regulates time perception and emotions: an exploratory fNIRS study.

Journal: Social cognitive and affective neuroscience

Authors' code: Cellphonexf/Intertemporal-Meditation-fNIRS (no license)

Status: code verified, 5 files readable, 4 matches

[21414] doi:10.1093/scan/nsaf082 [paper, repository]

Is cultural context the crucial touch? Neurophysiological and self-reported responses to affective touch in women in South Africa and the United Kingdom.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF fcqnk (no license)

Status: empty repository

[21415] doi:10.1093/scan/nsaf083 [paper, data]

Genes, culture, and neural sensitivity to norm violations: a DRD4 × culture interaction study.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21416] doi:10.1093/scan/nsaf085 [paper, data]

Probabilistic adaptation of language comprehension for individual speakers: evidence from neural oscillations.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21417] doi:10.1093/scan/nsaf086 [paper, data]

The impact of affective congruence on charitable giving.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21418] doi:10.1093/scan/nsaf088 [paper, data]

Dissociable brain activity for high-stakes deception detection in young and older adults.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21419] doi:10.1093/scan/nsaf089 [paper, data]

Visual congruency of performers' movements enhances vocal music reward through Mu entrainment.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21420] doi:10.1093/scan/nsaf091 [paper, repository]

The shared neural substrates of emotional mimicry and emotional contagion: an activation likelihood estimation meta-analysis and meta-analytic connectivity modeling analysis.

Journal: Social cognitive and affective neuroscience

Authors' code: NeuroStat/FailSafeN (no license)

Status: code verified, 6 files readable, 2 matches

[21421] doi:10.1093/scan/nsaf095 [paper, data]

Nonconscious processing of fearful and neutral faces modulates the N170.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21422] doi:10.1093/scan/nsaf101 [paper, repository]

Neural decoding of competitive decision-making in Rock-Paper-Scissors.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF yjxkn (no license)

Status: code verified, 6 files readable, 6 matches

[21423] doi:10.1093/scan/nsaf102 [paper, repository]

Frontocortical activity and emotional experience in the context of daily life events.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 4235b (no license)

Status: code verified, 2 files readable

[21424] doi:10.1093/scan/nsaf103 [paper, repository]

Authenticity is more than self-enhancement: behavioural and neurophysiological evidence.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 64sq8 (no license)

Status: code verified

[21425] doi:10.1093/scan/nsaf106 [paper, repository]

Beyond the music itself: How the social bond of listeners with performers affects their music liking.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF zmchj (no license)

Status: code verified, 1 file readable

[21426] doi:10.1093/scan/nsaf108 [paper, repository]

Challenging the negativity bias in affective scene viewing: The role of social content.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 7fb86 (no license)

Status: empty repository

[21427] doi:10.1093/scan/nsaf109 [paper, repository]

Time-varying brain state dynamics in trait impulsivity and anxiety: An HSMM analysis of resting-state fMRI.

Journal: Social cognitive and affective neuroscience

Authors' code: neuroanatomyandconnectivity/pipelines (MIT)

Status: code verified, 98 files readable, 2 matches

[21428] doi:10.1093/scan/nsaf118 [paper, data]

An investigation of the interaction of trait repetitive negative thinking and neuroticism on brain activity during negative self-referential processing: a cross-sectional fMRI study.

Journal: Social cognitive and affective neuroscience

Status: code on request, 1 dataset cited

[21429] doi:10.1093/scan/nsaf123 [paper, data]

Is individual attentional bias positive or negative? It depends on trait anxiety.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[21430] doi:10.1093/stmcls/sxae068 [paper, data]

A de novo missense mutation in PPP2R5D alters dopamine pathways and morphology of iPSC-derived midbrain neurons.

Journal: Stem cells (Dayton, Ohio)

Status: data only, 1 dataset cited

[21431] doi:10.1097/js9.0000000000002088 [paper, data]

Single-cell map of diverse immune phenotypes in the metastatic brain tumor microenvironment of nonsmall-cell lung cancer.

Journal: International journal of surgery (London, England)

Status: data only, 1 dataset cited

[21432] doi:10.1097/md.0000000000040965 [paper]

Analyzing gene-based apoptotic biomarkers in insomnia using bioinformatics.

Journal: Medicine

Status: data only

[21433] doi:10.1097/md.0000000000041396 [paper, data]

The roles of STAT1, CASP8, and MYD88 in the care of ischemic stroke.

Journal: Medicine

Status: data only, 1 dataset cited

[21434] doi:10.1098/rsob.240397 [paper, repository]

The olfactory pathway in the peracarid crustacean <i>Parhyale hawaiensis</i> (Malacostraca): new insights into the evolution of olfactory processing in Pancrustacea.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7758950 (no license)

Status: code found, still to be checked

[21435] doi:10.1109/tnsre.2025.3586175 [paper, repository]

Behavioral Classification of Sequential Neural Activity Using Time Varying Recurrent Neural Networks.

Journal: IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society

Authors' code: saxenalab-neuro/TV_RNN (no license)

Status: code verified, 8 files readable

[21436] doi:10.1109/tnsre.2025.3622587 [paper, repository]

Localization of Realistic Spatial Patches of Complex Source Activity in MEG and EEG.

Journal: IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society

Authors' code: Amita-Giri/PATCH-AP-Localization-of-Realistic-Spatial-Patches-of-Complex-Source-Activity-in-MEG-and-EEG (no license)

Status: code verified, 49 files readable, 6 matches

[21437] doi:10.1111/cns.70161 [paper, data]

A Risk Model Based on Ferroptosis-Related Genes OSMR, G0S2, IGFBP6, IGHG2, and FMOD Predicts Prognosis in Glioblastoma Multiforme.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[21438] doi:10.1111/cns.70172 [paper, data]

Integrated Mendelian Randomization and Single-Cell Transcriptomics Analysis Identifies Critical Blood Biomarkers and Potential Mechanisms in Epilepsy.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[21439] doi:10.1111/cns.70191 [paper]

Impact of LITAF on Mitophagy and Neuronal Damage in Epilepsy via MCL-1 Ubiquitination.

Journal: CNS neuroscience & therapeutics

Status: data only

[21440] doi:10.1111/cns.70196 [paper, repository]

Source Causal Connectivity Noninvasively Predicting Surgical Outcomes of Drug-Refractory Epilepsy.

Journal: CNS neuroscience & therapeutics

Authors' code: wyl1994/source-code-and-supporting-dataset-for-cns-neuroscience-therapeutics-paper (no license)

Status: code verified, 4 files readable, 2 matches

[21441] doi:10.1111/desc.13582 [paper, repository]

Neural Markers of Attention at 6 Months Associate With Later Attentional Control Performance.

Journal: Developmental science

Authors' code: OSF gkm59 (no license)

Status: code found, still to be checked

[21442] doi:10.1111/desc.13592 [paper, repository]

Combining Real-Time Neuroimaging With Machine Learning to Study Attention to Familiar Faces During Infancy: A Proof of Principle Study.

Journal: Developmental science

Authors' code: OSF yfa6t (no license)

Status: code verified, 18 files readable, 6 matches

[21443] doi:10.1111/ejn.16637 [paper, repository]

Measuring self-similarity in empirical signals to understand musical beat perception.

Journal: The European journal of neuroscience

Authors' code: OSF 5s3j7 (no license), TomasLenc/acf_tools (GPL-3.0)

Status: code verified, 46 files readable, 9 matches

[21444] doi:10.1111/ejn.16657 [paper, data]

Fast Neuronal Calcium Signals in Brain Slices Loaded With Fluo-4 AM Ester.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[21445] doi:10.1111/ejn.16674 [paper, data]

Unmasking the Dark Triad: A Data Fusion Machine Learning Approach to Characterize the Neural Bases of Narcissistic, Machiavellian and Psychopathic Traits.

Journal: The European journal of neuroscience

Status: data only, 4 datasets cited

[21446] doi:10.1111/ejn.16675 [paper, repository]

Hemispheric Asymmetry of Intracortical Myelin Orientation in the Mouse Auditory Cortex.

Journal: The European journal of neuroscience

Authors' code: PhilipRuthig/AC_hemispheric_asymmetry (MIT)

Status: code verified, 12 files readable, 8 matches

[21447] doi:10.1111/ejn.70005 [paper, data]

Predicting the Irrelevant: Neural Effects of Distractor Predictability Depend on Load.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[21448] doi:10.1111/ejn.70287 [paper, data]

Ventral Hippocampus Modulates Prefrontal Control of Background Contextual Fear After Cued Extinction.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[21449] doi:10.1111/gtc.13194 [paper]

Activation of Evolutionarily Young Endogenous Retroviruses Is Implicated in COVID-19 Immunopathology.

Journal: Genes to cells : devoted to molecular & cellular mechanisms

Status: data only

[21450] doi:10.1111/jnc.16266 [paper, repository]

Early-life IL-4 administration induces long-term changes in microglia in the cerebellum and prefrontal cortex.

Journal: Journal of neurochemistry

Authors' code: ncblcnc/IL-4_project (AGPL-3.0)

Status: code verified, 10 files readable, 4 matches

[21451] doi:10.1111/jnc.16274 [paper, data]

Nanobodies against the myelin enzyme CNPase as tools for structural and functional studies.

Journal: Journal of neurochemistry

Status: data only, 4 datasets cited

[21452] doi:10.1111/jnc.16298 [paper, data]

Interactions of Oligodendrocyte Precursor Cells and Dopaminergic Neurons in the Mouse Substantia Nigra.

Journal: Journal of neurochemistry

Status: data only, 1 dataset cited

[21453] doi:10.1111/jnc.70004 [paper]

GABA<sub>B</sub> Receptor Modulation of Membrane Excitability in Human Pluripotent Stem Cell-Derived Sensory Neurons by Baclofen and α-Conotoxin Vc1.1.

Journal: Journal of neurochemistry

Status: data only

[21454] doi:10.1111/jon.70013 [paper, repository]

Utilizing Quantitative Analysis of CSF Volume from Clinical T1-Weighted MRI to Predict Thrombectomy Outcomes.

Journal: Journal of neuroimaging : official journal of the American Society of Neuroimaging

Authors' code: BBillot/SynthSR (Apache-2.0)

Status: code verified, 35 files readable

[21455] doi:10.1111/jon.70027 [paper, data]

Resting-State fMRI to Map Language Function for Surgical Planning in Patients With Brain Tumors: A Feasibility Study.

Journal: Journal of neuroimaging : official journal of the American Society of Neuroimaging

Status: data only, 1 dataset cited

[21456] doi:10.1111/jpi.70029 [paper, data]

Resetting of the Human Circadian Melatonin Rhythm by Ambient Hypoxia.

Journal: Journal of pineal research

Status: data only, 2 datasets cited

[21457] doi:10.1111/micc.70001 [paper, repository]

Combining In Vivo Two-Photon and Laser Speckle Microscopy With the Ex Vivo Capillary-Parenchymal Arteriole Preparation as a Novel Approach to Study Neurovascular Coupling.

Journal: Microcirculation (New York, N.Y. : 1994)

Authors' code: JiLabUCBerkeley/FACED2PFM-vessel (no license)

Status: code verified, 46 files readable

[21458] doi:10.1111/psyp.14739 [paper, data]

The impact of transcutaneous vagus nerve stimulation on anterior cingulate cortex activity in a cognitive control task.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[21459] doi:10.1111/psyp.14743 [paper, repository]

Preprocessing choices for P3 analyses with mobile EEG: A systematic literature review and interactive exploration.

Journal: Psychophysiology

Authors' code: metascience-uol/mobileEEG_multiverse (MIT)

Status: code verified, 6 files readable, 4 matches

[21460] doi:10.1111/psyp.14752 [paper, repository]

Unexpected Twists: Electrophysiological Correlates of Encoding and Retrieval of Events Eliciting Prediction Error.

Journal: Psychophysiology

Authors' code: OSF sbc7d (no license), FPupillo/dprimethres (no license)

Status: code verified, 16 files readable, 2 matches

[21461] doi:10.1111/psyp.14761 [paper, repository]

Reward and Efficacy Modulate the Rate of Anticipatory Pupil Dilation.

Journal: Psychophysiology

Authors' code: OSF 9yjdh (no license)

Status: code found, still to be checked

[21462] doi:10.1111/psyp.14764 [paper, repository]

Reduced Theta Inter-Trial Phase Coherence in Error Processing: A Marker of Neural Dysfunction in Attention Deficit Hyperactivity Disorder.

Journal: Psychophysiology

Authors' code: mattansb/EPP-TB (GPL-3.0), Zenodo 3784278 (other-open), mattansb/tbt (no license)

Status: code verified, 77 files readable, 2 matches

[21463] doi:10.1111/psyp.14765 [paper, repository]

Measuring Realistic Emotional Perception With EEG: A Comparison of Multimodal Videos and Naturalistic Scenes.

Journal: Psychophysiology

Authors' code: OSF gx243 (no license), AndrewHFarkas/Pic_Vid (GPL-3.0)

Status: code verified, 74 files readable, 5 matches

[21464] doi:10.1117/1.bios.2.1.015002 [paper, repository]

Single-cell Raman spectroscopy detects pediatric focal cortical dysplasia.

Journal: Biophotonics discovery

Authors' code: mr-sheg/orpl (LGPL-3.0)

Status: code verified, 43 files readable, 2 matches

[21465] doi:10.1117/1.jmi.12.1.014004 [paper, repository]

Learning disentangled representations to harmonize connectome network measures.

Journal: Journal of medical imaging (Bellingham, Wash.)

Authors' code: nancynewlin-masi/LearningSiteInvariantConnectomeFeatures (no license)

Status: code verified, 7 files readable, 5 matches

[21466] doi:10.1117/1.nph.12.1.015008 [paper, data]

Important role of the right hemisphere in post-stroke cognitive impairment: a functional near-infrared spectroscopy study.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[21467] doi:10.1117/1.nph.12.1.015009 [paper, repository]

Revisiting equivalent optical properties for cerebrospinal fluid to improve diffusion-based modeling accuracy in the brain.

Journal: Neurophotonics

Authors' code: fangq/redbird-m (GNU), fangq/mmc (GPL-3.0)

Status: code verified, 413 files readable, 4 matches

[21468] doi:10.1117/1.nph.12.1.015010 [paper]

Quantitative simulation of near-infrared light treatment for Alzheimer's disease using patient-individualized optical-parametric phantoms.

Journal: Neurophotonics

Status: code on request

[21469] doi:10.1117/1.nph.12.1.015011 [paper]

Site- and electroencephalogram-frequency-specific effects of 800-nm prefrontal transcranial photobiomodulation on electroencephalogram global network topology in young adults.

Journal: Neurophotonics

Status: code on request

[21470] doi:10.1117/1.nph.12.1.015012 [paper]

Multiplexed fiber meta-tip-based circular polarimetry for label-free pathological analysis of ischemic stroke.

Journal: Neurophotonics

Status: code on request

[21471] doi:10.1117/1.nph.12.1.015014 [paper]

Enhanced spectral resolution and reduced acquisition time in fiber-based wavelength-swept source Raman spectroscopy.

Journal: Neurophotonics

Status: code on request

[21472] doi:10.1117/1.nph.12.1.015015 [paper, repository]

Intra-subject test-retest reliability for auditory-evoked functional near-infrared spectroscopy responses: effects of systemic physiology correction.

Journal: Neurophotonics

Authors' code: vsinfield22/SPA-fNIRS_test-retest_reliability (no license)

Status: code verified, 2 files readable, 3 matches

[21473] doi:10.1117/1.nph.12.1.015016 [paper, repository]

Creating anatomically derived, standardized, customizable, and three-dimensional printable head caps for functional neuroimaging.

Journal: Neurophotonics

Authors' code: COTILab/NeuroCaptain (GPL), neurojson.org/db/cotilab (no license)

Status: code verified, 84 files readable, 3 matches

[21474] doi:10.1117/1.nph.12.s1.s14606 [paper, repository]

Neurovascular coupling over cortical brain areas and resting state network connectivity with and without rigidified carotid artery.

Journal: Neurophotonics

Authors' code: marl1bakker/CaCl_P2 (no license)

Status: code verified, 80 files readable, 10 matches

[21475] doi:10.1117/1.nph.12.s1.s14609 [paper, repository]

Voluntary locomotion induces an early and remote hemodynamic decrease in the large cerebral veins.

Journal: Neurophotonics

Authors' code: Zenodo 14223430 (CC-BY-4.0), kirashaw1/drainingvein (no license)

Status: code verified, 12 files readable, 5 matches

[21476] doi:10.1117/1.nph.12.s1.s14610 [paper, repository]

Characterizing vascular function in mouse models of Alzheimer's disease, atherosclerosis, and mixed Alzheimer's and atherosclerosis.

Journal: Neurophotonics

Authors' code: Zenodo 14238624 (CC-BY-4.0), kirashaw1/characterizingvascfunction_adath (no license)

Status: code verified, 16 files readable, 3 matches

[21477] doi:10.1117/1.nph.12.s1.s14612 [paper, repository]

Semi-automated analysis of cerebral capillary red blood cell velocities allows modeling of transit time distribution after experimental subarachnoid hemorrhage in mice.

Journal: Neurophotonics

Authors' code: ychastagnier/Red-Blood-Cell-velocity (GPL-3.0)

Status: code verified, 3 files readable

[21478] doi:10.1117/1.nph.12.s1.s14613 [paper]

Repetitive transcranial magnetic stimulation increases synaptic plasticity of cortical axons in the APP/PS1 amyloidosis mouse model.

Journal: Neurophotonics

Status: code on request

[21479] doi:10.1117/1.nph.12.s1.s14615 [paper, data]

Hemodynamic and neuronal contributions to low-frequency vascular oscillations in a preclinical model of Alzheimer's disease.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[21480] doi:10.1117/1.nph.12.s1.s14616 [paper, repository]

Bridging the gap: umIT makes complex imaging data accessible to scientists of all backgrounds.

Journal: Neurophotonics

Authors' code: labeotech.github.io/umit (no license), LabeoTech/Umit (GPL-3.0)

Status: code verified, 362 files readable, 5 matches

[21481] doi:10.1126/sciadv.adn1870 [paper, repository]

Deep learning predicts DNA methylation regulatory variants in specific brain cell types and enhances fine mapping for brain disorders.

Journal: Science advances

Authors' code: Zenodo 10955827 (CC-BY-4.0), LieberInstitute/Cell-type-INTERACT (no license)

Status: code verified, 22 files readable, 5 matches

[21482] doi:10.1126/sciadv.adn3221 [paper, data]

Cortical VIP neurons as a critical node for dopamine actions.

Journal: Science advances

Status: data only, 1 dataset cited

[21483] doi:10.1126/sciadv.adn5758 [paper, repository]

Cross-modal sensory compensation increases mosquito attraction to humans.

Journal: Science advances

Authors' code: VosshallLab/Morita_Vosshall2023 (no license), Zenodo 14289492 (CC-BY-4.0)

Status: code verified, 27 files readable, 9 matches

[21484] doi:10.1126/sciadv.ado9965 [paper, repository]

Mesolimbic dopamine neurons drive infradian rhythms in sleep-wake and heightened activity state.

Journal: Science advances

Authors' code: clementbourguignon/Activity-monitoring (MIT), doi:10.5061/dryad.k6djh9wh8 (no license), Zenodo 14398420 (MIT)

Status: code verified, 9 files readable

[21485] doi:10.1126/sciadv.adq0889 [paper, data]

Dynamics of visual object coding within and across the hemispheres: Objects in the periphery.

Journal: Science advances

Status: data only, 3 datasets cited

[21486] doi:10.1142/9789819807024_0031 [paper, repository]

Cross-Species Modeling Identifies Gene Signatures in Type 2 Diabetes Mouse Models Predictive of Inflammatory and Estrogen Signaling Pathways Associated with Alzheimer's Disease Outcomes in Humans.

Journal: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing

Authors' code: Brubaker-Lab/MouseHuman-TransCompR-T2D-AD (CC0-1.0)

Status: code verified, 3 files readable, 7 matches

[21487] doi:10.1146/annurev-pharmtox-012924-010532 [paper, data]

Toluene Toxicity in the Brain: From Cellular Targets to Molecular Mechanisms.

Journal: Annual review of pharmacology and toxicology

Status: data only, 6 datasets cited

[21488] doi:10.1148/ryai.240005 [paper, repository]

SCIseg: Automatic Segmentation of Intramedullary Lesions in Spinal Cord Injury on T2-weighted MRI Scans.

Journal: Radiology. Artificial intelligence

Authors' code: ivadomed/model_seg_sci (MIT)

Status: code verified, 43 files readable, 13 matches

[21489] doi:10.1158/0008-5472.can-24-2248 [paper, repository]

FOXR2 Targets LHX6+/DLX+ Neural Lineages to Drive Central Nervous System Neuroblastoma.

Journal: Cancer research

Authors' code: fungenomics/CoRAL (Apache-2.0), GreenleafLab/motifmatchr (GPL-3.0), fungenomics/NB-FOXR2 (GPL-3.0)

Status: code verified, 154 files readable, 40 matches

[21490] doi:10.1158/2159-8290.cd-24-0134 [paper, data]

TIMP1 Mediates Astrocyte-Dependent Local Immunosuppression in Brain Metastasis Acting on Infiltrating CD8+ T Cells.

Journal: Cancer discovery

Status: data only, 1 dataset cited

[21491] doi:10.1159/000543770 [paper, data]

Synchronous Double Primary Malignancy of Non-Small Cell Lung Cancer and Glioblastoma: A Case Report and Literature Review.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[21492] doi:10.1159/000544876 [paper, data]

Concurrent Capillary Hemangioma of Optic Disc and Pituitary Gland Cyst: A Multimodal Imaging Approach and Review of Literature.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[21493] doi:10.1159/000545004 [paper, data]

Oncolytic Virotherapy for Relapsed, IDH-Mutant, Grade 3 Astrocytoma: A New Promising Approach - A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[21494] doi:10.1159/000545067 [paper, data]

A Rare Form of Reflex Epilepsy: Eating Epilepsy - A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[21495] doi:10.1159/000545079 [paper, data]

DNAJC30 Mutation in a Patient with Coexisting Leber's Hereditary Optic Neuropathy and Multiple Sclerosis (Harding's Syndrome): A Case Report.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[21496] doi:10.1159/000545411 [paper, data]

New-Onset Progressive Ataxia in a 66-Year-Old Woman with Longstanding Parkinson's Disease: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[21497] doi:10.1159/000545956 [paper, data]

Isolated Leptomeningeal Carcinomatosis in Triple-Negative Breast Cancer: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[21498] doi:10.1159/000546056 [paper, data]

Delayed Intracerebral Hemorrhage after Deep Brain Stimulation for Parkinson's Disease.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[21499] doi:10.1159/000546097 [paper, data]

Lyme Neuroborreliosis Presenting with Isolated Intracranial Hypertension: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[21500] doi:10.1159/000546098 [paper, data]

Challenges in the Diagnosis and Care of Tuberous Sclerosis Complex in Resource-Limited Settings: A Case Report from Tanzania.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[21501] doi:10.1159/000546305 [paper, data]

Neuron-Specific Enolase as a Biomarker in Ifosfamide-Induced Encephalopathy: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[21502] doi:10.1159/000546434 [paper, data]

Secondary Ocular Hypertension with Exophthalmos as the First Presentation of Endogenous Cushing's Syndrome.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[21503] doi:10.1159/000546580 [paper, data]

Subclavian Artery-Internal Carotid Artery Bypass Using a Radial Artery Graft for Common Carotid Artery Occlusion with Immediate Improvement of Cognitive Function: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[21504] doi:10.1159/000546853 [paper, data]

Subtypes of Intracranial Carotid Arteriosclerosis and Vascular Prognosis in Chronic Kidney Disease Patients.

Journal: Kidney diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

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