Every paper, by date: page 98

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 98 of 200: 26 December 2024 to 16 December 2024.

Thursday, 26 December 2024 (19 papers, 6 on this page)

[21729] doi:10.1172/jci.insight.187328 [paper, data]

Endothelial response to blood-brain barrier disruption in the human brain.

Journal: JCI insight

Status: data only, 1 dataset cited

[21730] doi:10.1172/jci183592 [paper, repository]

Tagless LysoIP for immunoaffinity enrichment of native lysosomes from clinical samples.

Journal: The Journal of clinical investigation

Authors' code: Zenodo 11281488 (CC-BY-4.0)

Status: code verified, 2 files readable

[21731] doi:10.1186/s12984-024-01533-4 [paper]

Unraveling EEG correlates of unimanual finger movements: insights from non-repetitive flexion and extension tasks.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[21732] doi:10.1371/journal.pcbi.1012644 [paper, repository]

Properties of winning Iterated Prisoner's Dilemma strategies.

Journal: PLoS computational biology

Authors' code: Nikoleta-v3/meta-analysis-of-prisoners-dilemma-tournaments (MIT)

Status: code verified, 22 files readable

[21733] doi:10.1523/eneuro.0224-24.2024 [paper, repository]

Neonatal Brain Injury Triggers Niche-Specific Changes to Cellular Biogeography.

Journal: eNeuro

Authors' code: keon-arbabi/spatial_hypoxia (no license)

Status: code verified, 3 files readable, 3 matches

[21734] doi:10.2142/biophysico.bppb-v22.0001 [paper, repository]

Near-infrared spectroscopic study of blood flow changes in the dorsolateral prefrontal cortex during pain relief by odor stimulation.

Journal: Biophysics and physicobiology

Authors' code: ShogoTKYM/RforNIRS (no license)

Status: code verified, 6 files readable

Wednesday, 25 December 2024 (7 papers)

[21735] doi:10.1016/j.isci.2024.111685 [paper]

Amputees but not healthy subjects optimally integrate non-spatially matched visuo-tactile stimuli.

Journal: iScience

Status: code on request

[21736] doi:10.1016/j.neo.2024.101116 [paper, data]

High p16<sup>INK4A</sup> expression in glioblastoma is associated with senescence phenotype and better prognosis.

Journal: Neoplasia (New York, N.Y.)

Status: code on request, 1 dataset cited

[21737] doi:10.1038/s42003-024-07404-x [paper, repository]

mFusion: a multiscale fusion method bridging neuroimages to genes through neurotransmissions in mental health disorders.

Journal: Communications biology

Authors' code: CaoLuolong/XomicsEnrich (no license), Zenodo 14374879 (CC-BY-4.0)

Status: code verified, 28 files readable, 8 matches

[21738] doi:10.1111/acel.14458 [paper]

DNMT3a Deficiency Contributes to Anesthesia/Surgery-Induced Synaptic Dysfunction and Cognitive Impairment in Aged Mice.

Journal: Aging cell

Status: data only

[21739] doi:10.3390/proteomes13010001 [paper, repository]

Phospho-Proteomics Analysis of Early Response to X-Ray Irradiation Reveals Molecular Mechanism Potentially Related to U251 Cell Radioresistance.

Journal: Proteomes

Authors' code: iprox.cn (no license)

Status: code verified

[21740] doi:10.3390/s25010052 [paper, data]

Exploring Task-Related EEG for Cross-Subject Early Alzheimer's Disease Susceptibility Prediction in Middle-Aged Adults Using Multitaper Spectral Analysis.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[21741] doi:10.3390/toxics13010010 [paper, repository]

Clearing the Air on Pollutant Disruptions of the Gut-Brain Axis: Developmental Exposure to Benzo[a]pyrene Disturbs Zebrafish Behavior and the Gut Microbiome in Adults and Subsequent Generations.

Journal: Toxics

Authors' code: kstagaman/sharpton-lab-dada2-pipeline (no license), kstagaman/sharpton-lab-metaGTx.processing (no license), aalexiev/ZebrafishBaPIntergenerationalMB (no license)

Status: code verified, 41 files readable, 13 matches

Tuesday, 24 December 2024 (19 papers)

[21742] doi:10.1002/epi4.13119 [paper, data]

CLN6-related continuum phenotype caused by aberrant splicing.

Journal: Epilepsia open

Status: data only, 2 datasets cited

[21743] doi:10.1016/j.celrep.2024.115090 [paper]

Cell-type-specific auditory responses in the striatum are shaped by feedforward inhibition.

Journal: Cell reports

Status: code on request

[21744] doi:10.1016/j.dcn.2024.101499 [paper, repository]

Neural correlates of vicarious reward processing and peer victimization experiences in late childhood.

Journal: Developmental cognitive neuroscience

Authors' code: OSF wxsdq (no license)

Status: empty repository

[21745] doi:10.1016/j.isci.2024.111680 [paper]

Placode and neural crest origins of congenital deafness in mouse models of Waardenburg-Shah syndrome.

Journal: iScience

Status: code on request

[21746] doi:10.1038/s41593-024-01829-7 [paper]

In vivo hyperphosphorylation of tau is associated with synaptic loss and behavioral abnormalities in the absence of tau seeds.

Journal: Nature neuroscience

Status: data only

[21747] doi:10.1038/s41598-024-82624-z [paper, data]

Multimodal data-based human motion intention prediction using adaptive hybrid deep learning network for movement challenged person.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21748] doi:10.1093/braincomms/fcae469 [paper]

Predicting incident dementia in community-dwelling older adults using primary and secondary care data from electronic health records.

Journal: Brain communications

Status: code on request

[21749] doi:10.1186/s13023-024-03511-4 [paper, data]

Multisystem clinicopathologic and genetic analysis of MELAS.

Journal: Orphanet journal of rare diseases

Status: data only, 1 dataset cited

[21750] doi:10.1186/s13104-024-07008-y [paper, data]

Single cell transcriptomics of the cerebral cortex of mice lacking the PRC2 gene eed.

Journal: BMC research notes

Status: data only, 1 dataset cited

[21751] doi:10.1186/s40478-024-01898-6 [paper, repository]

3-Dimensional morphological characterization of neuroretinal microglia in Alzheimer's disease via machine learning.

Journal: Acta neuropathologica communications

Authors' code: Peter-Hogg/Retinal-Microglia-Segmentation (MPL-2.0), OSF euspt (no license)

Status: code verified, 4 files readable, 5 matches

[21752] doi:10.1186/s40658-024-00707-2 [paper, repository]

EMATA: a toolbox for the automatic extraction and modeling of arterial inputs for tracer kinetic analysis in [¹⁸F]FDG brain studies.

Journal: EJNMMI physics

Authors' code: FairUnipd/EMATA (GPL-3.0)

Status: code verified, 96 files readable, 11 matches

[21753] doi:10.3389/fcimb.2024.1509630 [paper]

Metagenomic next-generation sequencing of cerebrospinal fluid: a diagnostic approach for varicella zoster virus-related encephalitis.

Journal: Frontiers in cellular and infection microbiology

Status: data only

[21754] doi:10.3389/fnagi.2024.1451850 [paper, data]

Environmental enrichment is associated with favorable memory-related functional brain activity patterns in older adults.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[21755] doi:10.3389/fnhum.2024.1437965 [paper, repository]

A Bayesian dynamic stopping method for evoked response brain-computer interfacing.

Journal: Frontiers in human neuroscience

Authors' code: thijor/pyntbci (BSD-3-Clause)

Status: code verified, 34 files readable, 6 matches

[21756] doi:10.3389/fpsyg.2024.1509392 [paper, repository]

Assessment of human emotional reactions to visual stimuli "deep-dreamed" by artificial neural networks.

Journal: Frontiers in psychology

Authors' code: CVRL/human-reactions-to-deepdream-samples (no license)

Status: code verified, 2 files readable, 2 matches

[21757] doi:10.3390/jimaging11010002 [paper, repository]

The Neural Frontier of Future Medical Imaging: A Review of Deep Learning for Brain Tumor Detection.

Journal: Journal of imaging

Authors' code: Zenodo 14551069 (CC-BY-4.0), Zenodo 14551091 (CC-BY-4.0)

Status: code verified, 6 files readable, 9 matches

[21758] doi:10.3390/s25010004 [paper]

A Flexible, Implantable, Bioelectronic Electroporation Device for Targeted Ablation of Seizure Foci in the Mouse Brain.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[21759] doi:10.3758/s13414-024-02997-1 [paper]

The N400 component reflecting semantic and repetition priming of visual scenes is suppressed during the attentional blink.

Journal: Attention, perception & psychophysics

Status: code on request

[21760] doi:10.7554/elife.96344 [paper, data]

The satiety hormone cholecystokinin gates reproduction in fish by controlling gonadotropin secretion.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 23 December 2024 (34 papers)

[21761] doi:10.1002/alz.14444 [paper, repository]

Integrating rare pathogenic variant prioritization with gene-based association analysis to identify novel genes and relevant multimodal traits for Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ZhaoXM-Lab/AD_SNV (no license)

Status: code verified, 3 files readable, 1 match

[21762] doi:10.1007/s00221-024-06973-x [paper, repository]

Alterations of upper-extremity functional muscle networks in chronic stroke survivors.

Journal: Experimental brain research

Authors' code: DelisLab/Muscle_PID (no license), SNeuroble/NBS_benchmarking (no license)

Status: code verified, 81 files readable, 7 matches

[21763] doi:10.1007/s12672-024-01685-8 [paper, data]

Exploring the role of Disulfidptosis in glioma progression: insights into tumor heterogeneity and therapeutic potential through single-cell RNA sequencing.

Journal: Discover oncology

Status: data only, 1 dataset cited

[21764] doi:10.1038/s41380-024-02879-w [paper]

ADNP is essential for sex-dependent hippocampal neurogenesis, through male unfolded protein response and female mitochondrial gene regulation.

Journal: Molecular psychiatry

Status: code on request

[21765] doi:10.1038/s41467-024-55416-2 [paper, repository]

Broadscale dampening of uncertainty adjustment in the aging brain.

Journal: Nature communications

Authors' code: Zenodo 7505622 (other-open), Zenodo 14216065 (CC-BY-4.0), Zenodo 14221999 (no license), jkosciessa/carl (GPL-3.0)

Status: code verified, 76 files readable, 3 matches

[21766] doi:10.1038/s41467-024-55493-3 [paper, data]

VLDLR mediates Semliki Forest virus neuroinvasion through the blood-cerebrospinal fluid barrier.

Journal: Nature communications

Status: data only, 1 dataset cited

[21767] doi:10.1038/s41597-024-04270-4 [paper, repository]

An open data for imaging acute aerobic exercise effects on brain and mind in emerging adulthood.

Journal: Scientific data

Authors' code: zuoxinian/ccs (GPL-2.0)

Status: code verified, 732 files readable, 10 matches

[21768] doi:10.1038/s41597-024-04282-0 [paper, repository]

HED LANG - A Hierarchical Event Descriptors library extension for annotation of language cognition experiments.

Journal: Scientific data

Authors' code: Zenodo 13987483 (CC-BY-4.0), hed-standard/hed-python (MIT)

Status: code verified, 280 files readable, 1 match

[21769] doi:10.1038/s41746-024-01384-2 [paper, repository]

Adaptive spatiotemporal encoding network for cognitive assessment using resting state EEG.

Journal: NPJ digital medicine

Authors' code: Sun199510/adaptive-spatiotemporal-encoding-network (no license)

Status: code verified, 2 files readable, 1 match

[21770] doi:10.1038/s44271-024-00177-3 [paper, repository]

A neurocognitive mechanism for increased cooperation during group formation.

Journal: Communications psychology

Authors' code: OSF 45r3x (no license)

Status: code verified, 44 files readable, 5 matches

[21771] doi:10.1039/d4ra06991a [paper, data]

Cognitive-enhancing effect of <i>Cordia dichotoma</i> fruit on scopolamine-induced cognitive impairment in rats: metabolite profiling, <i>in vivo</i>, and <i>in silico</i> investigations.

Journal: RSC advances

Status: data only, 1 dataset cited

[21772] doi:10.1083/jcb.202401136 [paper]

Neuronal constitutive endolysosomal perforations enable α-synuclein aggregation by internalized PFFs.

Journal: The Journal of cell biology

Status: code on request

[21773] doi:10.1097/cm9.0000000000003387 [paper, repository]

Artificial intelligence-enabled discovery of a RIPK3 inhibitor with neuroprotective effects in an acute glaucoma mouse model.

Journal: Chinese medical journal

Authors' code: thinng/GraphDTA (no license), guaguabujianle/MGraphDTA (MIT), 595693085/WGNN-DTA (no license), luwei0917/DynamicBind (MIT)

Status: code verified, 143 files readable, 1 match

[21774] doi:10.1117/1.jbo.29.12.126002 [paper]

Photoacoustic and fluorescence dual-modality imaging of cerebral biomarkers in Alzheimer's disease rodent model.

Journal: Journal of biomedical optics

Status: code on request

[21775] doi:10.1159/000542761 [paper, data]

Trastuzumab Deruxtecan for HER2-Positive Breast Cancer with Central Nervous System Metastasis.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[21776] doi:10.1177/25424823241307019 [paper, data]

Synergistic activity of nootropic herbs as potent therapeutics for Alzheimer's disease: A cheminformatics, pharmacokinetics, and system pharmacology approach.

Journal: Journal of Alzheimer's disease reports

Status: data only, 1 dataset cited

[21777] doi:10.1186/s12868-024-00915-7 [paper, repository]

Variable and slow-paced neural dynamics in HVC underlie plastic song production in juvenile zebra finches.

Journal: BMC neuroscience

Authors' code: vallentinlab/HVC-dynamics-in-zebra-finches (no license)

Status: code verified, 5 files readable

[21778] doi:10.1186/s12974-024-03314-1 [paper, data]

Accumulated BCAAs and BCKAs contribute to the HFD-induced deterioration of Alzheimer's disease via a dysfunctional TREM2-related reduction in microglial β-amyloid clearance.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[21779] doi:10.1371/journal.pcbi.1012039 [paper, repository]

Evaluation and comparison of methods for neuronal parameter optimization using the Neuroptimus software framework.

Journal: PLoS computational biology

Authors' code: KaliLab/neuroptimus (GPL-3.0), KaliLab/optimizer (LGPL-2.1), BlueBrain/BluePyEfe (LGPL-3.0)

Status: code verified, 287 files readable, 16 matches

[21780] doi:10.1371/journal.pcbi.1012655 [paper, repository]

Integration of partially observed multimodal and multiscale neural signals for estimating a neural circuit using dynamic causal modeling.

Journal: PLoS computational biology

Authors' code: monet-yonsei/mmsdcm (no license)

Status: code verified, 31 files readable, 15 matches

[21781] doi:10.1371/journal.pcbi.1012692 [paper, repository]

Extracting interpretable signatures of whole-brain dynamics through systematic comparison.

Journal: PLoS computational biology

Authors' code: DynamicsAndNeuralSystems/fMRI_FeaturesDisorders (no license), Zenodo 10467891 (CC-BY-4.0), Zenodo 8223340 (other-open), dynamicsandneuralsystems/pyspi (GPL-3.0)

Status: code verified, 129 files readable, 17 matches

[21782] doi:10.1371/journal.pgen.1011401 [paper, repository]

Runx3, Brn3a and Isl1 interplay orchestrates the transcriptional program in the early stages of proprioceptive neuron development.

Journal: PLoS genetics

Authors' code: TsviyaOlender/atac-seq-pipeline (no license), TsviyaOlender/cut_run (no license)

Status: code verified, 11 files readable, 4 matches

[21783] doi:10.1371/journal.pone.0312763 [paper, data]

Detection and location of EEG events using deep learning visual inspection.

Journal: PloS one

Status: data only, 1 dataset cited

[21784] doi:10.1371/journal.pone.0315887 [paper, data]

Temporal response patterns of Layer 4 rat barrel cortex neurons across various naturalistic whisker motions.

Journal: PloS one

Status: data only, 1 dataset cited

[21785] doi:10.14245/ns.2448814.407 [paper]

Precision Nanotherapy for Spinal Cord Injury: Modulating SLC16A3 With Methylprednisolone-Loaded Nanoparticles.

Journal: Neurospine

Status: data only

[21786] doi:10.3389/fimmu.2024.1431112 [paper, data]

Metabolic adaptation of myeloid cells in the glioblastoma microenvironment.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[21787] doi:10.3389/fnins.2024.1504765 [paper, data]

Neuroprotective role of sialic-acid-binding immunoglobulin-like lectin-11 in humanized transgenic mice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[21788] doi:10.3389/fphar.2024.1473213 [paper, data]

Chronic nicotine exposure induces molecular and transcriptomic endophenotypes associated with mood and anxiety disorders in a cerebral organoid neurodevelopmental model.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[21789] doi:10.3390/cimb46120871 [paper, data]

Comprehensive Transcriptome-Wide Profiling of 5-Methylcytosine Modifications in Long Non-Coding RNAs in a Rat Model of Traumatic Brain Injury.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[21790] doi:10.3390/foods13244170 [paper, data]

Rosemarinic Acid-Induced Destabilization of Aβ Peptides: Insights from Molecular Dynamics Simulations.

Journal: Foods (Basel, Switzerland)

Status: data only, 1 dataset cited

[21791] doi:10.7554/elife.100260 [paper, repository]

The emergence of visual category representations in infants' brains.

Journal: eLife

Authors' code: vpnl/floc (no license), VPNL/InfantObjectCategorization (no license)

Status: code verified, 47 files readable, 5 matches

[21792] doi:10.7554/elife.97083 [paper, repository]

Frequency-specific cortico-subcortical interaction in continuous speaking and listening.

Journal: eLife

Authors' code: OSF 9fq47 (no license)

Status: code verified, 4 files readable, 2 matches

[21793] doi:10.7717/peerj-cs.2538 [paper, repository]

Joint classification and regression with deep multi task learning model using conventional based patch extraction for brain disease diagnosis.

Journal: PeerJ. Computer science

Authors' code: kaggle.com/navoneel/brain-mri-images-for-brain-tumor-detection (no license), supp:PMC11784773/peerj-cs-10-2538-s001.r (no license)

Status: code verified, 1 file readable

[21794] doi:10.7717/peerj-cs.2610 [paper, repository]

CIT-EmotionNet: convolution interactive transformer network for EEG emotion recognition.

Journal: PeerJ. Computer science

Authors' code: shawnlyy/cit-emotionnet (MIT)

Status: code verified, 3 files readable

Sunday, 22 December 2024 (4 papers)

[21795] doi:10.1016/j.omtn.2024.102434 [paper, data]

<i>In vitro</i> high-content screening reveals miR-429 as a protective molecule in photoreceptor degeneration.

Journal: Molecular therapy. Nucleic acids

Status: data only, 1 dataset cited

[21796] doi:10.1021/acs.jmedchem.4c02694 [paper, data]

Discovery of MDI-114215: A Potent and Selective LIMK Inhibitor To Treat Fragile X Syndrome.

Journal: Journal of medicinal chemistry

Status: data only, 4 datasets cited

[21797] doi:10.3390/e26121125 [paper, repository]

Ornstein-Uhlenbeck Adaptation as a Mechanism for Learning in Brains and Machines.

Journal: Entropy (Basel, Switzerland)

Authors' code: artcogsys/OUA (no license)

Status: code verified, 5 files readable, 7 matches

[21798] doi:10.3390/insects15121016 [paper, data]

Expression of <i>Drosophila melanogaster</i> V-ATPases in Olfactory Sensillum Support Cells.

Journal: Insects

Status: data only, 1 dataset cited

Saturday, 21 December 2024 (6 papers)

[21799] doi:10.1002/ana.27159 [paper, repository]

Propranolol Reduces Parkinson's Tremor and Inhibits Tremor-Related Activity in the Motor Cortex: A Placebo-Controlled Crossover Trial.

Journal: Annals of neurology

Authors' code: AnoukvanderHeide/Propranolol_PD_tremor (no license)

Status: code verified, 817 files readable, 6 matches

[21800] doi:10.1016/j.brs.2024.12.1193 [paper, data]

Personalized whole-brain activity patterns predict human corticospinal tract activation in real-time.

Journal: Brain stimulation

Status: data only, 1 dataset cited

[21801] doi:10.1016/j.heliyon.2024.e41241 [paper, repository]

Bulk and single-cell transcriptome revealed the metabolic heterogeneity in human glioma.

Journal: Heliyon

Authors' code: Zenodo 22040374 (MIT)

Status: code verified, 12 files readable, 2 matches

[21802] doi:10.1016/j.omtn.2024.102433 [paper, data]

Gal-3 activates Tyro3 to ameliorate ferroptosis of hippocampal neurons after traumatic brain injury.

Journal: Molecular therapy. Nucleic acids

Status: code on request, 1 dataset cited

[21803] doi:10.1093/braincomms/fcae466 [paper, repository]

Complex auditory regularity processing across levels of consciousness in coma: Stage 1 Registered Report.

Journal: Brain communications

Authors' code: DNC-EEG-platform (no license)

Status: code verified

[21804] doi:10.3390/brainsci14121289 [paper, data]

Emotion Recognition Model of EEG Signals Based on Double Attention Mechanism.

Journal: Brain sciences

Status: data only, 1 dataset cited

Friday, 20 December 2024 (29 papers)

[21805] doi:10.1002/jclp.23761 [paper, repository]

Expressive Suppression of Emotions in Bulimia Nervosa: An Electroencephalography Study.

Journal: Journal of clinical psychology

Authors' code: OSF 2k63v (no license)

Status: code verified, 2 files readable, 1 match

[21806] doi:10.1016/j.ebiom.2024.105457 [paper, repository]

3D ultrasound localization microscopy of the nonhuman primate brain.

Journal: EBioMedicine

Authors' code: bionanoimaging/cellSTORM-MATLAB (no license)

Status: code verified, 66 files readable, 2 matches

[21807] doi:10.1016/j.heliyon.2024.e41414 [paper, data]

Extracellular domain of TREM2 possess two distinct ligand recognition sites: Insights from machine-learning guided docking and all-atoms molecular dynamics simulations.

Journal: Heliyon

Status: data only, 1 dataset cited

[21808] doi:10.1016/j.xpro.2024.103534 [paper]

Protocol for in vivo recording of neural activity in deep structures of mice brain via gradient lenses by calcium imaging.

Journal: STAR protocols

Status: code on request

[21809] doi:10.1038/s41537-024-00543-4 [paper, data]

Investigation of choroid plexus variability in schizophrenia-spectrum disorders-insights from a multimodal study.

Journal: Schizophrenia (Heidelberg, Germany)

Status: data only, 1 dataset cited

[21810] doi:10.1038/s42003-024-07396-8 [paper, repository]

Sex-specific fear acquisition following early life stress is linked to amygdala and hippocampal purine and glutamate metabolism.

Journal: Communications biology

Authors' code: Zenodo 14237774 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[21811] doi:10.1038/s44318-024-00326-8 [paper, data]

Mechanical signaling through membrane tension induces somal translocation during neuronal migration.

Journal: The EMBO journal

Status: data only, 2 datasets cited

[21812] doi:10.1073/pnas.2408083121 [paper, data]

Permanent cilia loss during cerebellar granule cell neurogenesis involves withdrawal of cilia maintenance and centriole capping.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[21813] doi:10.1093/braincomms/fcae382 [paper, repository]

Brain age in genetic and idiopathic Parkinson's disease.

Journal: Brain communications

Authors' code: james-cole/brainageR (LGPL-3.0), ppmi-info.org (no license)

Status: code verified, 9 files readable, 1 match

[21814] doi:10.1101/2024.12.19.629235 [paper, data]

Endocrine modulation of cortical and retinal blood flow across the menstrual cycle

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[21815] doi:10.1113/jp287045 [paper, repository]

Corticolimbic structures activation during preparation and execution of respiratory manoeuvres in voluntary olfactory sampling: An intracranial EEG study.

Journal: The Journal of physiology

Authors' code: JulesGranget/Script_Python_iEEG_Paris_git (no license)

Status: code verified, 34 files readable, 6 matches

[21816] doi:10.1113/jp287448 [paper, repository]

Role of forelimb morphology in muscle sensorimotor functions during locomotion in the cat.

Journal: The Journal of physiology

Authors' code: BorisPrilutskyLab/CatForelimbNeuromechanics (BSD-3-Clause)

Status: code verified, 408 files readable, 18 matches

[21817] doi:10.1117/1.nph.12.s1.s14604 [paper]

Early changes in spatiotemporal dynamics of remapped circuits and global networks predict functional recovery after stroke in mice.

Journal: Neurophotonics

Status: code on request

[21818] doi:10.1126/sciadv.ado8915 [paper, repository]

The human auditory cortex concurrently tracks syllabic and phonemic timescales via acoustic spectral flux.

Journal: Science advances

Authors' code: doi:10.5061/dryad.t4b8gtj9r (no license), jeremygrd/Neural-tracking-of-syllabic-and-phonemic-time-scale (no license), Zenodo 13121675 (MIT)

Status: code verified, 39 files readable, 7 matches

[21819] doi:10.1162/imag_a_00393 [paper, repository]

Direct segmentation of cortical cytoarchitectonic domains using ultra-high-resolution whole-brain diffusion MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: 4lexandru/MAPMRI_segmentation (MIT), doi:10.5061/dryad.1c59zw45n (no license), layerfMRI/LAYNII (BSD-3-Clause)

Status: code verified, 126 files readable, 3 matches

[21820] doi:10.1162/imag_a_00401 [paper]

Healthy aging is associated with altered visual gamma band onset and offset responses.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[21821] doi:10.1186/s13023-024-03456-8 [paper, data]

Clinical and functional characterization of a novel STUB1 mutation in a Chinese spinocerebellar ataxia 48 pedigree.

Journal: Orphanet journal of rare diseases

Status: data only, 1 dataset cited

[21822] doi:10.1186/s13059-024-03460-y [paper, repository]

Multi-omics approaches reveal that diffuse midline gliomas present altered DNA replication and are susceptible to replication stress therapy.

Journal: Genome biology

Authors' code: IES-HelmholtzZentrumMunchen/dna-fibers-analysis (no license)

Status: code verified, 21 files readable, 1 match

[21823] doi:10.1186/s13578-024-01303-8 [paper, data]

Impact of c-JUN deficiency on thalamus development in mice and human neural models.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[21824] doi:10.1242/dev.203102 [paper, data]

Barcoding Notch signaling in the developing brain.

Journal: Development (Cambridge, England)

Status: data only, 2 datasets cited

[21825] doi:10.12688/f1000research.160121.1 [paper, repository]

A guide to selecting high-performing antibodies for ADNP (UniProt ID: Q9H2P0) for use in western blot, immunoprecipitation, and immunofluorescence.

Journal: F1000Research

Authors' code: Zenodo 14366335 (CC-BY-4.0)

Status: empty repository

[21826] doi:10.1371/journal.pcbi.1012155 [paper, repository]

A computational model for angular velocity integration in a locust heading circuit.

Journal: PLoS computational biology

Authors' code: gitlab.uni-marburg.de/fb04/ag-endres/computational-model-locust-heading-circuit (no license)

Status: code verified, 55 files readable, 24 matches

[21827] doi:10.1371/journal.pone.0314962 [paper, repository]

Theoretical analysis of neuronal network's response under different stimulus.

Journal: PloS one

Authors' code: 333sen/333sen (no license)

Status: code verified, 3 files readable

[21828] doi:10.3389/fncom.2024.1460309 [paper, repository]

Learning delays through gradients and structure: emergence of spatiotemporal patterns in spiking neural networks.

Journal: Frontiers in computational neuroscience

Authors' code: mbalazs98/spatiotemporal (no license)

Status: code verified, 8 files readable, 3 matches

[21829] doi:10.3389/fninf.2024.1459970 [paper, repository]

hvEEGNet: a novel deep learning model for high-fidelity EEG reconstruction.

Journal: Frontiers in neuroinformatics

Authors' code: Maghoumi/pytorch-softdtw-cuda (MIT), jesus-333/Variational-Autoencoder-for-EEG-analysis (no license)

Status: code verified, 128 files readable, 14 matches

[21830] doi:10.3390/biom14121641 [paper, data]

Identifying Hub Genes and miRNAs Associated with Alzheimer's Disease: A Bioinformatics Pathway to Novel Therapeutic Strategies.

Journal: Biomolecules

Status: data only, 1 dataset cited

[21831] doi:10.3390/brainsci14121284 [paper, repository]

The Modulatory Effects of Transcranial Alternating Current Stimulation on Brain Oscillatory Patterns in the Beta Band in Healthy Older Adults.

Journal: Brain sciences

Authors' code: kenyamelissamf/tACS_Aging (no license)

Status: code verified, 15 files readable

[21832] doi:10.3390/life14121688 [paper, data]

Exploring Aquaporins in Human Studies: Mechanisms and Therapeutic Potential in Critical Illness.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[21833] doi:10.7554/elife.89674 [paper, repository]

A neuronal least-action principle for real-time learning in cortical circuits.

Journal: eLife

Authors' code: unibe-cns/nla-code (Apache-2.0)

Status: code verified, 22 files readable, 6 matches

Thursday, 19 December 2024 (46 papers)

[21834] doi:10.1007/s00429-024-02876-3 [paper, data]

Growth hormone secretagogue receptor and cannabinoid receptor type 1 intersection in the mouse brain.

Journal: Brain structure & function

Status: data only, 3 datasets cited

[21835] doi:10.1007/s10877-024-01248-w [paper, repository]

An open source autoregulation-based neuromonitoring algorithm shows PRx and optimal CPP association with pediatric traumatic brain injury.

Journal: Journal of clinical monitoring and computing

Authors' code: evantwist/panda (GPL-3.0)

Status: code verified, 5 files readable, 6 matches

[21836] doi:10.1016/j.isci.2024.111639 [paper, repository]

A pilot human study using ketamine to treat disorders of consciousness.

Journal: iScience

Authors' code: pcardone95/ComplEXIT_DoC (no license)

Status: code verified, 11 files readable, 5 matches

[21837] doi:10.1016/j.isci.2024.111643 [paper]

Predictions of bimanual self-touch determine the temporal tuning of somatosensory perception.

Journal: iScience

Status: code on request

[21838] doi:10.1016/j.isci.2024.111646 [paper]

FOXP2-immunoreactive corticothalamic neurons in neocortical layers 6a and 6b are tightly regulated by neuromodulatory systems.

Journal: iScience

Status: code on request

[21839] doi:10.1016/j.stemcr.2024.11.007 [paper, data]

Swift induction of human spinal lower motor neurons and robust ALS cell screening via single-cell imaging.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[21840] doi:10.1016/j.stemcr.2024.11.011 [paper]

PKM2 is a key factor to regulate neurogenesis and cognition by controlling lactate homeostasis.

Journal: Stem cell reports

Status: code on request

[21841] doi:10.1016/j.xpro.2024.103496 [paper, repository]

Protocol for artificial intelligence-guided neural control using deep reinforcement learning and infrared neural stimulation.

Journal: STAR protocols

Authors' code: bscoventry/OpticalTCNeuromodulation (MIT), Zenodo 11086673 (CC-BY-4.0), bscoventry/SpikerNet_StarProtocols (CC-BY-NC-4.0), bscoventry/DeepRLClosedLoopControl (CC-BY-NC-4.0), Zenodo 12746582 (CC-BY-4.0), bscoventry/insight (no license)

Status: code verified, 202 files readable, 17 matches

[21842] doi:10.1021/acs.jproteome.4c00759 [paper, repository]

Use and Comparison of Machine Learning Techniques to Discern the Protein Patterns of Autoantibodies Present in Women with and without Breast Pathology.

Journal: Journal of proteome research

Authors' code: jllagunoroque/WesternBlot_Classification (no license)

Status: code verified, 45 files readable, 1 match

[21843] doi:10.1021/acschemneuro.4c00684 [paper, repository]

3D Super-Resolution Imaging of PSD95 Reveals an Abundance of Diffuse Protein Supercomplexes in the Mouse Brain.

Journal: ACS chemical neuroscience

Authors' code: TheLeeLab/cameraCalibrationCMOS (no license), Zenodo 13332752 (CC-BY-4.0)

Status: code verified, 9 files readable

[21844] doi:10.1038/s41398-024-03203-4 [paper, data]

Neuroinflammatory history results in overlapping transcriptional signatures with heroin exposure in the nucleus accumbens and alters responsiveness to heroin in male rats.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[21845] doi:10.1038/s41420-024-02273-z [paper]

17β-estradiol alleviated ferroptotic neuroinflammation by suppressing ATF4 in mouse model of Parkinson's disease.

Journal: Cell death discovery

Status: data only

[21846] doi:10.1038/s41467-024-55226-6 [paper, repository]

Reliability of high-quantity human brain organoids for modeling microcephaly, glioma invasion and drug screening.

Journal: Nature communications

Authors' code: Zenodo 14102319 (CC-BY-4.0), Gpasquini/HiQ_analysis_reproducibility (no license)

Status: code verified, 15 files readable, 5 matches

[21847] doi:10.1038/s41537-024-00538-1 [paper, data]

The neurodevelopmental regulatory role and clinical value of hsa-circ-CORO1C-hsa-miR-708-3p-JARID2 + LNPEP axis in early-onset schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Status: data only, 1 dataset cited

[21848] doi:10.1038/s41597-024-04225-9 [paper, repository]

IPD-Brain: An Indian histopathology dataset for glioma subtype classification.

Journal: Scientific data

Authors' code: CancerDiag/IPD-Brain (no license)

Status: code verified, 14 files readable, 6 matches

[21849] doi:10.1038/s42003-024-07124-2 [paper, data]

Genome assembly of a nocturnal butterfly (Macrosoma leucophasiata) reveals convergent adaptation of visual genes.

Journal: Communications biology

Status: data only, 1 dataset cited

[21850] doi:10.1038/s42003-024-07274-3 [paper, repository]

Functional anatomy and topographical organization of the frontotemporal arcuate fasciculus.

Journal: Communications biology

Authors' code: neuroquery/neuroquery_image_search (BSD-3-Clause), BrainMappingLab (no license)

Status: code verified, 11 files readable

[21851] doi:10.1038/s42003-024-07345-5 [paper, repository]

PreyTouch: a touchscreen-based closed-loop system for studying predator-prey interactions.

Journal: Communications biology

Authors' code: EvolutionaryNeuralCodingLab/PreyTouch (no license), Zenodo 1419965 (CC-BY-4.0)

Status: code verified, 320 files readable, 16 matches

[21852] doi:10.1038/s42003-024-07349-1 [paper, repository]

Flexibility of intrinsic neural timescales during distinct behavioral states.

Journal: Communications biology

Authors' code: duodenum96/acw_behavior (no license)

Status: code verified, 65 files readable, 7 matches

[21853] doi:10.1038/s43588-024-00745-x [paper, repository]

Spatial modeling algorithms for reactions and transport in biological cells.

Journal: Nature computational science

Authors' code: Zenodo 11268945 (CC-BY-4.0), Zenodo 10019519 (LGPL-3.0), rangamanilabucsd/smart (LGPL-3.0), rangamanilabucsd/smart-comp-sci (CC-BY-SA-4.0)

Status: code verified, 148 files readable, 13 matches

[21854] doi:10.1038/s44271-024-00165-7 [paper, repository]

Prior memory responses modulate behavior and brain state engagement.

Journal: Communications psychology

Authors' code: OSF jzbym (no license), longtermmemorylab.com/publications (no license)

Status: code verified, 27 files readable, 7 matches

[21855] doi:10.1073/pnas.2313676121 [paper, data]

Stimulus-invariant aspects of the retinal code drive discriminability of natural scenes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[21856] doi:10.1117/1.jbo.29.12.126501 [paper, data]

Fast autofluorescence imaging to evaluate dynamic changes in cell metabolism.

Journal: Journal of biomedical optics

Status: data only, 1 dataset cited

[21857] doi:10.1117/1.nph.12.1.015001 [paper]

Distribution of spine classes shows intra-neuronal dendritic heterogeneity in mouse cortex.

Journal: Neurophotonics

Status: code on request

[21858] doi:10.1128/spectrum.01368-24 [paper, data]

Multi-level analysis of gut microbiome extracellular vesicles-host interaction reveals a connection to gut-brain axis signaling.

Journal: Microbiology spectrum

Status: data only, 2 datasets cited

[21859] doi:10.1159/000542979 [paper, data]

KETO-MOOD: Ketogenic Diet for Microbiome Optimization and Overcoming Depression - A Protocol for a Randomized Controlled Trial.

Journal: Neuroimmunomodulation

Status: data only, 1 dataset cited

[21860] doi:10.1162/imag_a_00386 [paper, repository]

Exercise-induced reductions in central command network cerebral blood flow assessed with arterial spin labeling MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: osubbal/ASL-CBF-Exercise_JCloud (no license)

Status: code verified, 8 files readable, 2 matches

[21861] doi:10.1162/imag_a_00389 [paper]

Patterns and predictors of orbitofrontal sulcogyral morphology in a nonclinical population.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[21862] doi:10.1162/imag_a_00392 [paper, data]

When the brain says "No!": An MRI study on the neural correlates of resistance to immoral orders.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[21863] doi:10.1162/imag_a_00403 [paper, repository]

Resting-state functional network segregation of the default mode network predicts valence bias across the lifespan.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: wiglab/system-segregation-and-graph-tools (MIT)

Status: code verified, 19 files readable, 1 match

[21864] doi:10.1162/imag_a_00404 [paper, repository]

Pattern separation involves regions beyond the hippocampus in non-demented elderly individuals: A 7T object lure task fMRI study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: CCLRCBH-BIC (no license)

Status: code verified

[21865] doi:10.1162/imag_a_00405 [paper]

Domain-specific cognitive impairment is differentially affected by Alzheimer disease tau pathologic burden and spread.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[21866] doi:10.1186/s11689-024-09582-5 [paper, data]

Specialization of the brain for language in children with Fragile X Syndrome: a functional Near Infrared Spectroscopy study.

Journal: Journal of neurodevelopmental disorders

Status: data only, 1 dataset cited

[21867] doi:10.1186/s13024-024-00782-0 [paper, data]

Dementia with lewy bodies patients with high tau levels display unique proteome profiles.

Journal: Molecular neurodegeneration

Status: data only, 3 datasets cited

[21868] doi:10.1186/s40035-024-00454-5 [paper, data]

CD2AP deficiency aggravates Alzheimer's disease phenotypes and pathology through p38 MAPK activation.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[21869] doi:10.1192/bjo.2024.829 [paper, repository]

The SLaM Brain Health Clinic: remote biomarker enhanced memory clinic for people with mild cognitive impairment within a National Health Service mental health trust.

Journal: BJPsych open

Authors' code: OSF myuq7 (no license)

Status: code verified

[21870] doi:10.1371/journal.pone.0310743 [paper, data]

Connectome-based prediction of functional impairment in experimental stroke models.

Journal: PloS one

Status: data only, 1 dataset cited

[21871] doi:10.1371/journal.pone.0313855 [paper, repository]

Effect of age and sex differences on the abundances of neuronal, glial, and endothelial cells in non-diseased brain tissue.

Journal: PloS one

Authors' code: broadinstitute/gtex-pipeline (BSD-3-Clause)

Status: code verified, 39 files readable, 1 match

[21872] doi:10.1371/journal.pone.0314361 [paper, data]

Effects of combining sensory-motor exercises with transcranial direct current stimulation on cortical processing and clinical symptoms in patients with lumbosacral radiculopathy: An exploratory randomized controlled trial.

Journal: PloS one

Status: data only, 1 dataset cited

[21873] doi:10.1530/etj-24-0093 [paper, repository]

Incidence and gender difference of brain metastases in newly diagnosed follicular thyroid cancer patients.

Journal: European thyroid journal

Authors' code: seer.cancer.gov (no license)

Status: code verified

[21874] doi:10.3389/fimmu.2024.1497839 [paper, data]

Single-cell and spatiotemporal transcriptomic profiling of brain immune infiltration following Venezuelan equine encephalitis virus infection.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[21875] doi:10.3389/fnins.2024.1506987 [paper, data]

Distinct brain systems are involved in subjective minute estimation with eyes open or closed: EEG source analysis study.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[21876] doi:10.3390/ijms252413583 [paper, repository]

Extended Photoperiod Facilitated the Restoration of the Expression of GH-IGF Axis Genes in Submerged Rainbow Trout (<i>Oncorhynchus mykiss</i>).

Journal: International journal of molecular sciences

Authors' code: najoshi/sickle (MIT)

Status: code verified, 10 files readable

[21877] doi:10.3390/jcm13247759 [paper, repository]

Deep Brain Stimulation Combined with NMDA Antagonist Therapy in the Treatment of Alzheimer's Disease: In Silico Trials.

Journal: Journal of clinical medicine

Authors' code: dswietlik/dariusz-swietlik (no license)

Status: empty repository

[21878] doi:10.3390/s24248127 [paper, data]

Enhancing Deep-Learning Classification for Remote Motor Imagery Rehabilitation Using Multi-Subject Transfer Learning in IoT Environment.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[21879] doi:10.7554/elife.87517 [paper, repository]

Statistical analysis supports pervasive RNA subcellular localization and alternative 3' UTR regulation.

Journal: eLife

Authors' code: salzman-lab/SPRAWL (MIT), CaiGroup/seqFISH-PLUS (no license), r-bierman/SPRAWL (MIT)

Status: code verified, 61 files readable, 5 matches

Wednesday, 18 December 2024 (49 papers)

[21880] doi:10.1007/s12264-024-01330-y [paper]

Deciphering the Role of Shank3 in Dendritic Morphology and Synaptic Function Across Postnatal Developmental Stages in the Shank3B KO Mouse.

Journal: Neuroscience bulletin

Status: code on request

[21881] doi:10.1016/j.crtox.2024.100210 [paper]

A computational dynamic systems model for &lt;i&gt;in silico&lt;/i&gt; prediction of neural tube closure defects.

Journal: Current research in toxicology

Status: data only

[21882] doi:10.1016/j.dcn.2024.101492 [paper, repository]

Sports participation &amp; childhood neurocognitive development.

Journal: Developmental cognitive neuroscience

Authors' code: OSF q5wyx (no license)

Status: code verified, 10 files readable, 14 matches

[21883] doi:10.1016/j.dcn.2024.101493 [paper, repository]

EEG-based brain age prediction in infants-toddlers: Implications for early detection of neurodevelopmental disorders.

Journal: Developmental cognitive neuroscience

Authors' code: OSF u3gp4 (no license)

Status: code verified, 30 files readable, 23 matches

[21884] doi:10.1016/j.ebiom.2024.105504 [paper]

Disentangling relationships between Alzheimer's disease plasma biomarkers and established biomarkers in patients of tertiary memory clinics.

Journal: EBioMedicine

Status: code on request

[21885] doi:10.1016/j.isci.2024.111616 [paper, data]

Adenosine deficiency facilitates CA1 synaptic hyperexcitability in the presymptomatic phase of a knockin mouse model of Alzheimer disease.

Journal: iScience

Status: code on request, 1 dataset cited

[21886] doi:10.1016/j.ynstr.2024.100705 [paper]

Neuroanatomical prediction of individual anxiety problems level using machine learning models: A population-based cohort study of young adults.

Journal: Neurobiology of stress

Status: code on request

[21887] doi:10.1038/s41398-024-03192-4 [paper, data]

Targeted memory reactivation during sleep improves emotional memory modulation following imagery rescripting.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[21888] doi:10.1038/s41398-024-03200-7 [paper, repository]

Disorder-specific neurodynamic features in schizophrenia inferred by neurodynamic embedded contrastive variational autoencoder model.

Journal: Translational psychiatry

Authors' code: gpreti/GSP_StructuralDecouplingIndex (Apache-2.0), murraylab/brainsmash (GPL-3.0), rmarkello/abagen (BSD-3-Clause), wuyanwind/ndcvae (no license)

Status: code verified, 118 files readable, 8 matches

[21889] doi:10.1038/s41398-024-03202-5 [paper, repository]

Exploring PDE5A upregulation in bipolar disorder: insights from single-nucleus RNA sequencing of human basal ganglia.

Journal: Translational psychiatry

Authors' code: satijalab/seurat (other), FduZhuLab/BD-basal-ganglia (GPL-3.0)

Status: code verified, 139 files readable, 17 matches

[21890] doi:10.1038/s41398-024-03204-3 [paper, repository]

Prefrontal cortex stimulation normalizes deficient adaptive learning from outcome contingencies in low mood.

Journal: Translational psychiatry

Authors' code: OSF kjb6y (no license)

Status: code verified, 18 files readable, 4 matches

[21891] doi:10.1038/s41398-024-03207-0 [paper, data]

Disruption of the gut microbiota-inflammation-brain axis in unmedicated bipolar disorder II depression.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[21892] doi:10.1038/s41467-024-54206-0 [paper, data]

Structural mechanism of CB&lt;sub&gt;1&lt;/sub&gt;R binding to peripheral and biased inverse agonists.

Journal: Nature communications

Status: data only, 1 dataset cited

[21893] doi:10.1038/s41586-024-08334-8 [paper, repository]

Spatial transcriptomic clocks reveal cell proximity effects in brain ageing.

Journal: Nature

Authors' code: sunericd/spatial_aging_clocks (no license)

Status: code verified, 1 file readable, 7 matches

[21894] doi:10.1038/s41597-024-04102-5 [paper, repository]

A finer-grained high altitude EEG dataset for hypoxia levels assessment.

Journal: Scientific data

Authors' code: crisglav/discover-eeg (CC-BY-4.0), siyingjun007/FGHA-EEG-Dataset-Code (MIT)

Status: code verified, 104 files readable, 4 matches

[21895] doi:10.1038/s41597-024-04187-y [paper, repository]

Annotated interictal discharges in intracranial EEG sleep data and related machine learning detection scheme.

Journal: Scientific data

Authors' code: NirLab-TAU/iEEG_ied_detection (no license)

Status: code verified, 3 files readable, 3 matches

[21896] doi:10.1038/s41598-024-81966-y [paper, data]

Leveraging transfer learning-driven convolutional neural network-based semantic segmentation model for medical image analysis using MRI images.

Journal: Scientific reports

Status: data only, 1 dataset cited

[21897] doi:10.1038/s42003-024-07397-7 [paper, repository]

Aperiodic and oscillatory systems underpinning human domain-general cognition.

Journal: Communications biology

Authors' code: OSF h2q6n (no license)

Status: code verified, 40 files readable, 4 matches

[21898] doi:10.1038/s44172-024-00328-8 [paper]

Implantable silicon neural probes with nanophotonic phased arrays for single-lobe beam steering.

Journal: Communications engineering

Status: code on request

[21899] doi:10.1080/29933935.2024.2439490 [paper]

Comparison Between Two Divergent Diets, Mediterranean and Western, on Gut Microbiota and Cognitive Function in Young Sprague Dawley Rats.

Journal: Gut microbes reports

Status: data only

[21900] doi:10.1093/sleepadvances/zpae096 [paper, repository]

Memory updating in dreams.

Journal: Sleep advances : a journal of the Sleep Research Society

Authors' code: OSF mj43y (no license)

Status: code verified, 1 file readable, 12 matches

[21901] doi:10.1098/rsob.240250 [paper, repository]

The modified elevated gap interaction test: a novel paradigm to assess social preference.

Journal: Open biology

Authors' code: saptera/MEGIT (AGPL-3.0), doi:10.6084/m9.figshare.c.7569522 (no license)

Status: code verified, 24 files readable, 1 match

[21902] doi:10.1126/sciadv.adl4743 [paper, repository]

Inferring context-dependent computations through linear approximations of prefrontal cortex dynamics.

Journal: Science advances

Authors' code: Zenodo 11538761 (CC-BY-4.0), jsoldadomagraner/PFC-LDS-approx (CC-BY-NC-SA-4.0)

Status: code verified, 34 files readable, 1 match

[21903] doi:10.1126/sciadv.adq2754 [paper, repository]

Distinct impact modes of polygenic disposition to dyslexia in the adult brain.

Journal: Science advances

Authors' code: doi:10.5061/dryad.80gb5mkz6 (no license), sourena-s/UKBB-dyslexia (no license), getian107/PRScs (MIT), bulik/ldsc (GPL-3.0)

Status: code verified, 33 files readable, 2 matches

[21904] doi:10.1126/sciadv.adq4194 [paper, repository]

Future spinal reflex is embedded in primary motor cortex output.

Journal: Science advances

Authors' code: Zenodo 10623537 (CC-BY-4.0)

Status: code verified, 4 files readable

[21905] doi:10.1126/sciadv.adr5920 [paper, data]

Mechanisms underlying modulation of human GlyRα3 by Zn&lt;sup&gt;2+&lt;/sup&gt; and pH.

Journal: Science advances

Status: data only, 10 datasets cited

[21906] doi:10.1186/s12864-024-11141-0 [paper]

siRNA silencing and hypoxia challenge indicate that the function of common carp (Cyprinus carpio) hif-1αb genes are tightly linked to hif-1αa and hif-3α genes.

Journal: BMC genomics

Status: data only

[21907] doi:10.1186/s12880-024-01523-x [paper, data]

Deep superpixel generation and clustering for weakly supervised segmentation of brain tumors in MR images.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[21908] doi:10.1186/s12885-024-13285-4 [paper, repository]

Prion protein regulates invasiveness in glioblastoma stem cells.

Journal: BMC cancer

Authors' code: marilenehohmuth/PrionGBM (no license)

Status: code verified, 3 files readable

[21909] doi:10.1186/s12888-024-06392-w [paper, repository]

Exploring autism spectrum disorder and co-occurring trait associations to elucidate multivariate genetic mechanisms and insights.

Journal: BMC psychiatry

Authors' code: jakelin212/mvasd_gwas (no license)

Status: code verified, 3 files readable

[21910] doi:10.1186/s12974-024-03294-2 [paper]

Dorsoventral photobiomodulation therapy safely reduces inflammation and sensorimotor deficits in a mouse model of multiple sclerosis.

Journal: Journal of neuroinflammation

Status: code on request

[21911] doi:10.1186/s12974-024-03307-0 [paper, repository]

Microglia in the aged brain develop a hypoactive molecular phenotype after surgery.

Journal: Journal of neuroinflammation

Authors' code: bcbio-nextgen.readthedocs.io (no license)

Status: code verified

[21912] doi:10.1186/s12974-024-03320-3 [paper, repository]

Alterations of the IKZF1-IKZF2 tandem in immune cells of schizophrenia patients regulate associated phenotypes.

Journal: Journal of neuroinflammation

Authors' code: trevismd/statannotations (MIT)

Status: code verified, 51 files readable

[21913] doi:10.1186/s13020-024-01040-7 [paper, data]

Integrated network pharmacology and transcriptomics to explore the mechanism of compound Dihuang granule (CDG) protects dopaminergic neurons by regulating the Nrf2/HMOX1 pathway in the 6-OHDA/MPP⁺-induced model of Parkinson's disease.

Journal: Chinese medicine

Status: data only, 6 datasets cited

[21914] doi:10.1186/s13034-024-00846-5 [paper, data]

Cannabinoids for treating psychiatric disorders in youth: a systematic review of randomized controlled trials.

Journal: Child and adolescent psychiatry and mental health

Status: data only, 1 dataset cited

[21915] doi:10.1186/s13040-024-00411-y [paper, repository]

Exploring glioma heterogeneity through omics networks: from gene network discovery to causal insights and patient stratification.

Journal: BioData mining

Authors' code: sysbiomed/MONET (no license)

Status: code verified, 6 files readable

[21916] doi:10.1186/s13041-024-01168-5 [paper, repository]

Dynamic changes in the hippocampal neuronal circuits activity following acute stress revealed by miniature fluorescence microscopy imaging.

Journal: Molecular brain

Authors' code: spbstu-applied-math/NeuroActivityToolkit (no license)

Status: code verified, 17 files readable, 5 matches

[21917] doi:10.1186/s13073-024-01417-1 [paper, repository]

Epigenome-wide association studies identify novel DNA methylation sites associated with PTSD: a meta-analysis of 23 military and civilian cohorts.

Journal: Genome medicine

Authors' code: PGC-PTSD-EWAS/EPIC_QC (no license)

Status: code verified, 11 files readable, 3 matches

[21918] doi:10.1186/s13287-024-04074-8 [paper, repository]

An hiPSC-CM approach for electrophysiological phenotyping of a patient-specific case of short-coupled TdP.

Journal: Stem cell research & therapy

Authors' code: OSF 86ufe (no license)

Status: code verified

[21919] doi:10.1186/s40708-024-00244-9 [paper, repository]

Explainable brain age prediction: a comparative evaluation of morphometric and deep learning pipelines.

Journal: Brain informatics

Authors' code: sisinflabaibio/BrainAge-Dashboard (no license)

Status: code verified, 5 files readable

[21920] doi:10.1186/s40708-024-00246-7 [paper, repository]

High-throughput mesoscopic optical imaging data processing and parsing using differential-guided filtered neural networks.

Journal: Brain informatics

Authors' code: Brainsmatics/DDGF-SegNet (no license)

Status: code verified, 31 files readable

[21921] doi:10.1371/journal.pone.0316002 [paper, repository]

Optimized radiofrequency shimming using low-heating B1+-mapping in the presence of deep brain stimulation implants: Proof of concept.

Journal: PloS one

Authors' code: supp:PMC11654958/pone.0316002.s002.zip (no license)

Status: code verified, 6 files readable

[21922] doi:10.21037/tcr-24-1350 [paper, repository]

Genomic landscape of medulloblastoma subtypes in an Asian cohort.

Journal: Translational cancer research

Authors' code: WGLab/intervar (no license)

Status: code verified, 2 files readable

[21923] doi:10.3389/fnana.2024.1463632 [paper, repository]

Cell density quantification of high resolution Nissl images of the juvenile rat brain.

Journal: Frontiers in neuroanatomy

Authors' code: BlueBrain/layer-recognition (Apache-2.0)

Status: code verified, 37 files readable, 11 matches

[21924] doi:10.3389/fped.2024.1465632 [paper, repository]

AGMA-PESS: a deep learning-based infant pose estimator and sequence selector software for general movement assessment.

Journal: Frontiers in pediatrics

Authors' code: AmeurSoualmi/AGMA-Pose-Estimator-and-Sequence-Selector (MIT), drive.google.com/file/d (no license)

Status: code verified, 23 files readable, 4 matches

[21925] doi:10.3390/biom14121621 [paper]

COVID-19 Exacerbates Neurovascular Uncoupling and Contributes to Endothelial Dysfunction in Patients with Mild Cognitive Impairment.

Journal: Biomolecules

Status: code on request

[21926] doi:10.3390/brainsci14121272 [paper, data]

The Effect of Processing Techniques on the Classification Accuracy of Brain-Computer Interface Systems.

Journal: Brain sciences

Status: data only, 1 dataset cited

[21927] doi:10.7554/elife.103973 [paper, repository]

<i>Drosulfakinin</i> signaling encodes early-life memory for adaptive social plasticity.

Journal: eLife

Authors' code: taejoonlab/tracking-fly (CC0-1.0), KJKwon/2023_FlyBehavior (MIT), jstaf/fly_tracker (BSD-3-Clause)

Status: code verified, 52 files readable, 1 match

[21928] doi:10.7554/elife.97709 [paper, repository]

An integrated machine learning approach delineates an entropic expansion mechanism for the binding of a small molecule to α-synuclein.

Journal: eLife

Authors' code: JMLab-tifrh/Protein_Ligand_Variational_Autoencoder (MIT)

Status: code verified, 6 files readable, 3 matches

Tuesday, 17 December 2024 (18 papers)

[21929] doi:10.1002/acn3.52250 [paper, data]

APOE genotype and brain amyloid are associated with changes in the plasma proteome in elderly subjects without dementia.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[21930] doi:10.1016/j.dcn.2024.101489 [paper, repository]

Sample size estimation for task-related functional MRI studies using Bayesian updating.

Journal: Developmental cognitive neuroscience

Authors' code: eduardklap/neuroUp (other), eduardklap.github.io/sample-size-fmri (no license), Zenodo 11526169 (MIT)

Status: code verified, 28 files readable, 4 matches

[21931] doi:10.1016/j.heliyon.2024.e41268 [paper]

Macrophage to neuron communication via extracellular vesicles in neuropathic pain conditions.

Journal: Heliyon

Status: code on request

[21932] doi:10.1038/s41467-024-53548-z [paper, repository]

Brain change trajectories in healthy adults correlate with Alzheimer's related genetic variation and memory decline across life.

Journal: Nature communications

Authors' code: jamesmroe/ADchangeRisk (MIT), Zenodo 13844701 (CC-BY-4.0)

Status: code verified, 26 files readable, 18 matches

[21933] doi:10.1073/pnas.2407517121 [paper, repository]

Internal feedback circuits among MEX-5, MEX-6, and PLK-1 maintain faithful patterning in the &lt;i&gt;Caenorhabditis elegans&lt;/i&gt; embryo.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sofiabarbieri/MCeleM6 (GPL-3.0), sofiabarbieri/GradientAnalysis (GPL-3.0), sofiabarbieri/CorticalDomain (AGPL-3.0), sofiabarbieri/FRAP_AnalysisTool (GPL-3.0)

Status: code verified, 26 files readable

[21934] doi:10.1073/pnas.2423270121 [paper, repository]

Genome-wide single-cell and single-molecule footprinting of transcription factors with deaminase.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: foodie.sunneyxielab.org (no license)

Status: code verified

[21935] doi:10.1085/jgp.202313488 [paper, data]

Intrinsic adaptive plasticity in mouse and human sensory neurons.

Journal: The Journal of general physiology

Status: data only, 2 datasets cited

[21936] doi:10.1093/braincomms/fcae457 [paper, repository]

Locus coeruleus signal intensity and emotion regulation in agitation in Alzheimer's disease.

Journal: Brain communications

Authors' code: k-y-liu/DELCODE_agitationLC (no license)

Status: code verified, 2 files readable, 2 matches

[21937] doi:10.1159/000543178 [paper, data]

Pharmacologic Management of Obesity in Neuro-Oncology: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[21938] doi:10.1186/s12987-024-00584-y [paper, data]

Brain endothelial permeability, transport, and flow assessed over 10 orders of magnitude using the in situ brain perfusion technique.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[21939] doi:10.2147/nss.s487782 [paper, repository]

White Matter Imaging Phenotypes Mediate the Negative Causality of Mitochondrial DNA Copy Number on Sleep Apnea: A Bidirectional Mendelian Randomization Study and Mediation Analysis.

Journal: Nature and science of sleep

Authors' code: aj-grant/mrhorse (no license)

Status: code verified, 14 files readable

[21940] doi:10.3389/fnagi.2024.1498687 [paper, data]

Diagnostic accuracy of heart rate variability as a screening tool for mild neurocognitive disorder.

Journal: Frontiers in aging neuroscience

Status: data only, 3 datasets cited

[21941] doi:10.3389/fncel.2024.1487867 [paper, data]

&lt;i&gt;Tet2&lt;/i&gt;-mediated clonal hematopoiesis modestly improves neurological deficits and is associated with inflammation resolution in the subacute phase of experimental stroke.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[21942] doi:10.3389/fnhum.2024.1525139 [paper, data]

EEG channel and feature investigation in binary and multiple motor imagery task predictions.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[21943] doi:10.3389/fnimg.2024.1481858 [paper, repository]

Resting-state fMRI seizure onset localization meta-analysis: comparing rs-fMRI to other modalities including surgical outcomes.

Journal: Frontiers in neuroimaging

Authors' code: BoerwinkleLab/SOZMetaAnalysis (no license)

Status: code verified, 9 files readable, 1 match

[21944] doi:10.3390/brainsci14121271 [paper, data]

Mismatch Negativity Unveils Tone Perception Strategies and Degrees of Tone Merging: The Case of Macau Cantonese.

Journal: Brain sciences

Status: data only, 1 dataset cited

[21945] doi:10.3390/ph17121704 [paper, repository]

Revealing the Mechanism of <i>Hemerocallis citrina</i> Baroni in Depression Treatment Through Integrated Network Pharmacology and Transcriptomic Analysis.

Journal: Pharmaceuticals (Basel, Switzerland)

Authors' code: najoshi/sickle (MIT), tanghaibao/Goatools (BSD-2-Clause)

Status: code verified, 146 files readable, 5 matches

[21946] doi:10.7554/elife.89950 [paper, repository]

Midbrain encodes sound detection behavior without auditory cortex.

Journal: eLife

Authors' code: doi:10.5061/dryad.b2rbnzspz (no license), leetaiying/lee-et-al-2024 (no license)

Status: code verified, 3 files readable, 4 matches

Monday, 16 December 2024 (39 papers, 6 on this page)

[21947] doi:10.1002/1878-0261.13786 [paper, data]

Tonabersat enhances temozolomide-mediated cytotoxicity in glioblastoma by disrupting intercellular connectivity through connexin 43 inhibition.

Journal: Molecular oncology

Status: data only, 1 dataset cited

[21948] doi:10.1002/advs.202308965 [paper]

Schwann Cell-Specific Ablation of Beclin 1 Impairs Myelination and Leads to Motor and Sensory Neuropathy in Mice.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[21949] doi:10.1002/advs.202409883 [paper, data]

Dietary Palmitic Acid Drives a Palmitoyltransferase ZDHHC15-YAP Feedback Loop Promoting Tumor Metastasis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[21950] doi:10.1007/s00415-024-12815-1 [paper, repository]

Interpretable deep learning survival predictions in sporadic Creutzfeldt-Jakob disease.

Journal: Journal of neurology

Authors' code: jcytam/scjdsurv (no license)

Status: dead link

[21951] doi:10.1007/s00701-024-06375-6 [paper, repository]

Exploration of simultaneous transients between cerebral hemodynamics and the autonomic nervous system using windowed time-lagged cross-correlation matrices: a CENTER-TBI study.

Journal: Acta neurochirurgica

Authors' code: AUTOMATIC-BRAIN-ANS/WTLCC-Transients-NN (MIT)

Status: code verified, 31 files readable, 1 match

[21952] doi:10.1016/j.cub.2024.11.023 [paper, repository]

Layer-specific anatomical and physiological features of the retina's neurovascular unit.

Journal: Current biology : CB

Authors' code: Schwartz-AlaLaurila-Labs/sa-labs-extension (no license)

Status: code verified, 149 files readable

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