Every paper, by date: page 100

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 100 of 200: 5 December 2024 to 1 December 2024.

Thursday, 5 December 2024 (44 papers, 42 on this page)

[22177] doi:10.1016/j.isci.2024.111540 [paper, repository]

The canonical deep neural network as a model for human symmetry processing.

Journal: iScience

Authors' code: OSF 8f7yt (no license)

Status: code verified, 303 files readable, 4 matches

[22178] doi:10.1016/j.mcpro.2024.100891 [paper, repository]

Predicting Protein Pathways Associated to Tumor Heterogeneity by Correlating Spatial Lipidomics and Proteomics: The Dry Proteomic Concept.

Journal: Molecular & cellular proteomics : MCP

Authors' code: yanisZirem/Spatial_multi-omics_guided_by_SVD_kmeans_clustering_and_statistical_estimation_of_heterogeneity (no license)

Status: dead link

[22179] doi:10.1016/j.omtn.2024.102414 [paper, data]

Multi-omic insights into molecular mechanism and therapeutic targets in spinocerebellar ataxia type 7.

Journal: Molecular therapy. Nucleic acids

Status: data only, 2 datasets cited

[22180] doi:10.1016/j.stem.2024.11.002 [paper]

Human adult neurogenesis loss corresponds with cognitive decline during epilepsy progression.

Journal: Cell stem cell

Status: code on request

[22181] doi:10.1016/j.xpro.2024.103469 [paper]

Protocol for single sensillum recording from labial olfactory sensory fields in spotted lanternfly.

Journal: STAR protocols

Status: code on request

[22182] doi:10.1038/s41398-024-03189-z [paper, repository]

Prefrontal electrophysiological biomarkers and mechanism-based drug effects in a rat model of alcohol addiction.

Journal: Translational psychiatry

Authors' code: habeltb/Multimodal_ECoG_ratPFC_alcoholism (MIT)

Status: code verified, 6 files readable, 4 matches

[22183] doi:10.1038/s41467-024-54694-0 [paper, repository]

Synaptic connectome of the Drosophila circadian clock.

Journal: Nature communications

Authors' code: codex.flywire.ai (no license), Zandawala-lab/Synaptic-connectome-of-the-Drosophila-circadian-clock_Reinhard-and-Fukuda-et-al.-2024 (GPL-3.0)

Status: code verified, 50 files readable, 18 matches

[22184] doi:10.1038/s41467-024-54837-3 [paper, repository]

Tbx1 haploinsufficiency leads to local skull deformity, paraflocculus and flocculus dysplasia, and motor-learning deficit in 22q11.2 deletion syndrome.

Journal: Nature communications

Authors' code: stjude/DeepBrainIPP (Apache-2.0), ZakharenkoLab/Tbx1_haploinsufficiency_snRNAseq_Project (no license), CobraLab/MAGeTbrain (other)

Status: code verified, 58 files readable, 8 matches

[22185] doi:10.1038/s41467-024-54935-2 [paper, repository]

Vector coding and place coding in hippocampus share a common directional signal.

Journal: Nature communications

Authors' code: YueqingZhou/Landmark-vector-cell (no license)

Status: code verified, 30 files readable, 3 matches

[22186] doi:10.1038/s41597-024-04157-4 [paper, repository]

Generative models of MRI-derived neuroimaging features and associated dataset of 18,000 samples.

Journal: Scientific data

Authors' code: huggingface.co/spaces/rongguangw/genmind (MIT)

Status: code verified, 3 files readable, 4 matches

[22187] doi:10.1038/s41598-024-80745-z [paper, data]

Brain physiology during photoperiod-related caste determination in the primitively eusocial wasp Polistes jokahamae.

Journal: Scientific reports

Status: data only, 3 datasets cited

[22188] doi:10.1038/s41598-024-81655-w [paper, repository]

Temporal integration on the dendrites of fast-spiking basket cells.

Journal: Scientific reports

Authors' code: 77laundry/temporal-integration-FS-BCs (no license)

Status: dead link

[22189] doi:10.1038/s42003-024-06851-w [paper, repository]

High-intensity physiological activation disrupts the neural signatures of conflict processing.

Journal: Communications biology

Authors' code: OSF rdnmf (no license)

Status: empty repository

[22190] doi:10.1038/s42003-024-07313-z [paper, repository]

ICU patient-on-a-chip emulating orchestration of mast cells and cerebral organoids in neuroinflammation.

Journal: Communications biology

Authors' code: Odabasi-Yusuf/ICU-GO (no license)

Status: empty repository, 1 file readable

[22191] doi:10.1073/pnas.2312831121 [paper, data]

Representation of a perceptual bias in the prefrontal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22192] doi:10.1073/pnas.2419079121 [paper, repository]

Endo-IP and lyso-IP toolkit for endolysosomal profiling of human-induced neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 13882568 (CC-BY-4.0), Zenodo 13882797 (CC-BY-4.0), Zenodo 13885953 (CC-BY-4.0), Zenodo 13885853 (CC-BY-4.0), Zenodo 13882583 (CC-BY-4.0)

Status: code verified, 1 file readable

[22193] doi:10.1093/braincomms/fcae439 [paper, repository]

Alpha rhythm slowing in temporal lobe epilepsy across scalp EEG and MEG.

Journal: Brain communications

Authors' code: Zenodo 13171578 (CC-BY-4.0)

Status: code verified, 2 files readable

[22194] doi:10.1109/jbhi.2024.3416890 [paper, repository]

Hyperbolic Graph Embedding of MEG Brain Networks to Study Brain Alterations in Individuals With Subjective Cognitive Decline.

Journal: IEEE journal of biomedical and health informatics

Authors' code: ColeSBaker/hyperBrain (MIT)

Status: code verified, 148 files readable, 14 matches

[22195] doi:10.1111/epi.18185 [paper, data]

Epilepsy surgery in children with operculoinsular epilepsy: Results of a large unicentric cohort.

Journal: Epilepsia

Status: data only, 2 datasets cited

[22196] doi:10.1111/epi.18192 [paper, data]

The Imaging Database for Epilepsy And Surgery (IDEAS).

Journal: Epilepsia

Status: data only, 1 dataset cited

[22197] doi:10.1128/msystems.01014-24 [paper, data]

Extracellular vesicles from fifth-stage larval <i>Angiostrongylus cantonensis</i> upregulate cholesterol biosynthesis and suppress NLRP2-associated inflammatory responses in mouse astrocytes.

Journal: mSystems

Status: data only, 31 datasets cited

[22198] doi:10.1162/imag_a_00382 [paper]

Neural processing of rhythmic speech by children with developmental language disorder (DLD): An EEG study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[22199] doi:10.1162/imag_a_00384 [paper, repository]

Whole-brain responses to visual and auditory stimuli in anesthetized and minimally restrained awake mice using quiet zero echo time fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: snakemake.github.io (no license), stnava.github.io/ants (no license)

Status: code verified

[22200] doi:10.1186/s12916-024-03775-4 [paper, data]

Clinical research framework proposal for ketogenic metabolic therapy in glioblastoma.

Journal: BMC medicine

Status: data only, 1 dataset cited

[22201] doi:10.1186/s12987-024-00603-y [paper, repository]

Choroid plexus aging: structural and vascular insights from the HCP-aging dataset.

Journal: Fluids and barriers of the CNS

Authors' code: physimals/hcp-asl (Apache-2.0)

Status: code verified, 30 files readable, 3 matches

[22202] doi:10.1186/s41747-024-00534-1 [paper]

DSA-based perfusion parameters versus TICI score after mechanical thrombectomy in acute ischaemic stroke patients: a congruence analysis.

Journal: European radiology experimental

Status: code on request

[22203] doi:10.1371/journal.pcbi.1012640 [paper, repository]

Circuits and mechanisms for TMS-induced corticospinal waves: Connecting sensitivity analysis to the network graph.

Journal: PLoS computational biology

Authors' code: genejongyu/tms-iwaves-structuralanalysis-2024 (MIT)

Status: code verified, 79 files readable, 19 matches

[22204] doi:10.1371/journal.pcbi.1012647 [paper, repository]

Whole brain functional connectivity: Insights from next generation neural mass modelling incorporating electrical synapses.

Journal: PLoS computational biology

Authors' code: UoN-Math-Neuro/NFESOLVE (no license)

Status: code verified, 40 files readable, 3 matches

[22205] doi:10.1371/journal.pone.0312438 [paper, repository]

RT-Sort: An action potential propagation-based algorithm for real time spike detection and sorting with millisecond latencies.

Journal: PloS one

Authors' code: kosiklabucsb/rt-sort (MIT)

Status: code verified, 60 files readable

[22206] doi:10.1371/journal.pone.0313274 [paper, data]

Infant low-frequency EEG cortical power, cortical tracking and phase-amplitude coupling predicts language a year later.

Journal: PloS one

Status: data only, 1 dataset cited

[22207] doi:10.1523/eneuro.0405-24.2024 [paper, repository]

Neural Encoding of Direction and Distance across Reference Frames in Visually Guided Reaching.

Journal: eNeuro

Authors' code: dundonnm/vRSAb (GPL-3.0)

Status: code verified, 3 files readable

[22208] doi:10.3389/fnagi.2024.1450337 [paper, data]

An integrated transcriptomic analysis of brain aging and strategies for healthy aging.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[22209] doi:10.3389/fnbeh.2024.1509369 [paper, repository]

SARTAB, a scalable system for automated real-time behavior detection based on animal tracking and Region Of Interest analysis: validation on fish courtship behavior.

Journal: Frontiers in behavioral neuroscience

Authors' code: tlancaster6/RBA (MIT), voxel51/fiftyone-examples (Apache-2.0), google-coral/tutorials (Apache-2.0), Zenodo 7347926 (other-open), ultralytics/yolov5 (AGPL-3.0)

Status: code verified, 198 files readable

[22210] doi:10.3389/fnins.2024.1446578 [paper, repository]

autoMEA: machine learning-based burst detection for multi-electrode array datasets.

Journal: Frontiers in neuroscience

Authors' code: QMAI/papers/autoMEA (MIT), automea.readthedocs.io (no license)

Status: code verified, 30 files readable, 6 matches

[22211] doi:10.3389/fphys.2024.1487809 [paper, data]

A motor imagery classification model based on hybrid brain-computer interface and multitask learning of electroencephalographic and electromyographic deep features.

Journal: Frontiers in physiology

Status: data only, 2 datasets cited

[22212] doi:10.3390/ijms252313082 [paper, data]

Neuroprotective and Anti-Inflammatory Effects of Dimethyl Fumarate, Monomethyl Fumarate, and Cannabidiol in Neurons and Microglia.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[22213] doi:10.3390/s24237782 [paper, repository]

SiCRNN: A Siamese Approach for Sleep Apnea Identification via Tracheal Microphone Signals.

Journal: Sensors (Basel, Switzerland)

Authors' code: LilloByte/SiCRNN (no license)

Status: code verified, 8 files readable, 1 match

[22214] doi:10.3390/s24237794 [paper, data]

Improving Multiscale Fuzzy Entropy Robustness in EEG-Based Alzheimer's Disease Detection via Amplitude Transformation.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[22215] doi:10.7554/elife.102702 [paper, repository]

Parallel mechanisms signal a hierarchy of sequence structure violations in the auditory cortex.

Journal: eLife

Authors' code: Zenodo 14027003 (CC-BY-4.0)

Status: code verified

[22216] doi:10.7554/elife.89851 [paper, data]

Modeled grid cells aligned by a flexible attractor.

Journal: eLife

Status: data only, 1 dataset cited

[22217] doi:10.7554/elife.91522 [paper, repository]

When abstract becomes concrete, naturalistic encoding of concepts in the brain.

Journal: eLife

Authors' code: ViktorKewenig/Naturalistic_Encoding_Concepts (no license)

Status: code verified, 11 files readable, 4 matches

[22218] doi:10.7554/elife.99424 [paper, repository]

Multisensory integration enhances audiovisual responses in the Mauthner cell.

Journal: eLife

Authors' code: doi:10.5061/dryad.rxwdbrvkj (no license), Zenodo 14260005 (MIT)

Status: code verified, 2 files readable

Wednesday, 4 December 2024 (52 papers)

[22219] doi:10.1002/epi4.13061 [paper, data]

Preventing epileptogenesis by interaction between inositol isomers and proteins.

Journal: Epilepsia open

Status: data only, 16 datasets cited

[22220] doi:10.1002/mco2.70014 [paper]

Single-cell transcriptomic analysis of glioblastoma reveals pericytes contributing to the blood-brain-tumor barrier and tumor progression.

Journal: MedComm

Status: data only

[22221] doi:10.1007/s10439-024-03663-1 [paper]

Immediate Irradiation Induced Cerebral Water and Hemodynamic Response in Whole Brain Radiotherapy.

Journal: Annals of biomedical engineering

Status: code on request

[22222] doi:10.1007/s10930-024-10241-w [paper, data]

Exploring Acoustic Detection of α-Synuclein Fibrils.

Journal: The protein journal

Status: data only, 1 dataset cited

[22223] doi:10.1007/s11060-024-04885-y [paper, repository]

TTF-1 negativity in synchronous M1b/M1c wildtype lung adenocarcinoma brain metastases predicts worse survival with increased risk of intracranial progression.

Journal: Journal of neuro-oncology

Authors' code: dasilew/clinicalNSCLC_1 (no license)

Status: code verified, 7 files readable, 4 matches

[22224] doi:10.1007/s12672-024-01649-y [paper]

Unraveling molecular signatures and prognostic biomarkers in glioblastoma: a comprehensive study on treatment resistance and personalized strategies.

Journal: Discover oncology

Status: data only

[22225] doi:10.1007/s41465-024-00314-0 [paper, repository]

Anodal High-definition Transcranial Direct Current Stimulation Over the Left (but not Right) Parietal Cortex Facilitates Mental Arithmetic.

Journal: Journal of cognitive enhancement : towards the integration of theory and practice

Authors' code: OSF f2jgn (no license)

Status: empty repository

[22226] doi:10.1016/j.isci.2024.111531 [paper, data]

Supplementary motor area in speech initiation: A large-scale intracranial EEG evaluation of stereotyped word articulation.

Journal: iScience

Status: code on request, 1 dataset cited

[22227] doi:10.1016/j.xcrm.2024.101845 [paper, repository]

The neonatal gut microbiota: A role in the encephalopathy of prematurity.

Journal: Cell reports. Medicine

Authors' code: BioMedIA/dhcp-structural-pipeline (Apache-2.0)

Status: code verified, 1,250 files readable, 2 matches

[22228] doi:10.1016/j.xpro.2024.103467 [paper, repository]

Protocol for immunofluorescence staining and large-scale analysis to quantify microglial cell morphology at single-cell resolution in mice.

Journal: STAR protocols

Authors' code: CorradoAmeliLU/MIC-MAC-2.1 (MIT)

Status: code verified, 4 files readable, 2 matches

[22229] doi:10.1038/s41398-024-03187-1 [paper]

Synergistic, multi-level understanding of psychedelics: three systematic reviews and meta-analyses of their pharmacology, neuroimaging and phenomenology.

Journal: Translational psychiatry

Status: code on request

[22230] doi:10.1038/s41467-024-54322-x [paper, repository]

Orthogonalization of spontaneous and stimulus-driven activity by hierarchical neocortical areal network in primates.

Journal: Nature communications

Authors' code: teppei-matsui/NN_Simulation (no license)

Status: code verified, 1 file readable, 1 match

[22231] doi:10.1038/s41467-024-54372-1 [paper]

Evolutionary changes leading to efficient glymphatic circulation in the mammalian brain.

Journal: Nature communications

Status: code on request

[22232] doi:10.1038/s41467-024-54604-4 [paper, data]

Synaptotagmin-11 deficiency mediates schizophrenia-like behaviors in mice via dopamine over-transmission.

Journal: Nature communications

Status: data only, 1 dataset cited

[22233] doi:10.1038/s41467-024-54700-5 [paper, repository]

Models optimized for real-world tasks reveal the task-dependent necessity of precise temporal coding in hearing.

Journal: Nature communications

Authors' code: msaddler/phaselocknet (MIT)

Status: code verified, 39 files readable, 40 matches

[22234] doi:10.1038/s41467-024-54830-w [paper, data]

Decoding the molecular, cellular, and functional heterogeneity of zebrafish intracardiac nervous system.

Journal: Nature communications

Status: data only, 1 dataset cited

[22235] doi:10.1038/s41467-024-54958-9 [paper, data]

Yin Yang 1 and guanine quadruplexes protect dopaminergic neurons from cellular stress via transmissive dormancy.

Journal: Nature communications

Status: data only, 1 dataset cited

[22236] doi:10.1038/s41467-024-55008-0 [paper, repository]

Edge-centric connectome-genetic markers of bridging factor to comorbidity between depression and anxiety.

Journal: Nature communications

Authors' code: OSF nu32z (no license), mingruixia/MDD_ConnectomeGradient (no license), neurospider.cn/post/62271 (no license), brain-networks (no license), csie.ntu.edu.tw/~cjlin/libsvm (no license)

Status: code verified, 57 files readable, 3 matches

[22237] doi:10.1038/s41539-024-00285-z [paper, repository]

Transcranial direct current stimulation targeting the bilateral IFG alters cognitive processes during creative ideation.

Journal: NPJ science of learning

Authors' code: XieCong0330/for_tDCS_EEG (no license)

Status: code verified, 6 files readable, 1 match

[22238] doi:10.1038/s41586-024-08241-y [paper, repository]

Understanding the neural code of stress to control anhedonia.

Journal: Nature

Authors' code: lindermanlab/ssm (MIT), mkheirbek (no license)

Status: code verified, 67 files readable, 2 matches

[22239] doi:10.1038/s41586-024-08272-5 [paper, repository]

Macrophages excite muscle spindles with glutamate to bolster locomotion.

Journal: Nature

Authors' code: Zenodo 13902719 (CC-BY-4.0), yuyang970923/macrophages-excite-muscle-spindles-with-glutamate-to-bolster-locomotion (no license)

Status: code verified, 2 files readable

[22240] doi:10.1038/s41586-024-08282-3 [paper, data]

Synthetic GPCRs for programmable sensing and control of cell behaviour.

Journal: Nature

Status: code on request, 1 dataset cited

[22241] doi:10.1038/s41586-024-08289-w [paper, repository]

Mis-splicing of a neuronal microexon promotes CPEB4 aggregation in ASD.

Journal: Nature

Authors' code: KULL-Centre/_2023_Garcia-Cabau_CPEB4 (AGPL-3.0), KULL-Centre/CALVADOS (GPL-3.0), Zenodo 13880099 (CC-BY-4.0)

Status: code verified, 59 files readable, 5 matches

[22242] doi:10.1038/s41598-024-80448-5 [paper, data]

Eeg based smart emotion recognition using meta heuristic optimization and hybrid deep learning techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22243] doi:10.1038/s41598-024-80891-4 [paper]

Developing a nearly automated open-source pipeline for conducting computational fluid dynamics simulations in anterior brain vasculature: a feasibility study.

Journal: Scientific reports

Status: code on request

[22244] doi:10.1038/s41598-024-81752-w [paper, repository]

One size does not fit all in evaluating model selection scores for image classification.

Journal: Scientific reports

Authors' code: NanoAB86/ModelSelection_Benchmark (no license)

Status: code verified, 39 files readable, 3 matches

[22245] doi:10.1038/s42003-024-07298-9 [paper, repository]

Transformers significantly improve splice site prediction.

Journal: Communications biology

Authors' code: benniatli/Spliceformer (MIT), colab.research.google.com/drive/15dpjh0oqfagmbudisxkfekven4kyimt2 (no license), Zenodo 14019451 (CC-BY-4.0)

Status: code verified, 42 files readable, 8 matches

[22246] doi:10.1038/s44303-024-00055-x [paper, repository]

Robust self-supervised denoising of voltage imaging data using CellMincer.

Journal: Npj imaging

Authors' code: cellarium-ai/CellMincerPaperAnalysis (no license), cellarium-ai/CellMincer (BSD-3-Clause), cellarium-ai/Optosynth (BSD-3-Clause)

Status: code verified, 49 files readable, 18 matches

[22247] doi:10.1038/s44318-024-00327-7 [paper, data]

Kinesin-like motor protein KIF23 maintains neural stem and progenitor cell pools in the developing cortex.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[22248] doi:10.1073/pnas.2405965121 [paper, data]

K<sub>ATP</sub> channel-dependent electrical signaling links capillary pericytes to arterioles during neurovascular coupling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22249] doi:10.1073/pnas.2407497121 [paper, repository]

Actin polymerization counteracts prewetting of N-WASP on supported lipid bilayers.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gitlab.pks.mpg.de/mesoscopic-physics-of-life/dropletfrap (no license)

Status: code found, still to be checked

[22250] doi:10.1073/pnas.2413687121 [paper, repository]

eLemur: A cellular-resolution 3D atlas of the mouse lemur brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: feng-lab/zjbrainscience-front (no license)

Status: code verified, 68 files readable

[22251] doi:10.1126/sciadv.ado6166 [paper, data]

Domain-specific representation of social inference by neurons in the human amygdala and hippocampus.

Journal: Science advances

Status: data only, 1 dataset cited

[22252] doi:10.1159/000542858 [paper, data]

Hypothyroidism Promotes Microglia M1 Polarization by Inhibiting BDNF-Promoted PI3K-Akt Signaling Pathway.

Journal: Neuroendocrinology

Status: data only, 1 dataset cited

[22253] doi:10.1371/journal.pbio.3002935 [paper, repository]

Local changes in potassium ions regulate input integration in active dendrites.

Journal: PLoS biology

Authors' code: malthenielsen/potassium_hotspots (no license)

Status: code verified, 268 files readable

[22254] doi:10.1371/journal.pcbi.1012614 [paper, repository]

Predicting proprioceptive cortical anatomy and neural coding with topographic autoencoders.

Journal: PLoS computational biology

Authors' code: figshare 17393591 (CC-BY-4.0)

Status: code verified, 4 files readable, 3 matches

[22255] doi:10.1371/journal.pone.0304306 [paper, repository]

Cortical evoked activity is modulated by the sleep state in a ferret model of tinnitus. A cross-case study.

Journal: PloS one

Authors' code: l-milinski/Code_for_Milinski_et_al_2023 (no license)

Status: code verified, 10 files readable, 12 matches

[22256] doi:10.1371/journal.pone.0307351 [paper, data]

Decomposing working memory subprocesses with the reference-back paradigm: Event-related potentials and age-related differences.

Journal: PloS one

Status: data only, 1 dataset cited

[22257] doi:10.1371/journal.pone.0312848 [paper, repository]

Deep learning analysis of fMRI data for predicting Alzheimer's Disease: A focus on convolutional neural networks and model interpretability.

Journal: PloS one

Authors' code: gersteinlab/fmgene (CC-BY-4.0)

Status: code verified, 16 files readable, 2 matches

[22258] doi:10.1371/journal.pone.0313077 [paper, data]

Modulation of electrical activity of proteinoid microspheres with chondroitin sulfate clusters.

Journal: PloS one

Status: data only, 1 dataset cited

[22259] doi:10.1371/journal.pone.0313514 [paper, data]

Efficient derivation of functional astrocytes from human induced pluripotent stem cells (hiPSCs).

Journal: PloS one

Status: data only, 1 dataset cited

[22260] doi:10.1371/journal.pone.0314268 [paper, repository]

Multiscale effective connectivity analysis of brain activity using neural ordinary differential equations.

Journal: PloS one

Authors' code: santacruzlab/msDyNODE (MIT)

Status: code verified, 3 files readable, 2 matches

[22261] doi:10.1523/jneurosci.0841-24.2024 [paper, repository]

Fast Feature- and Category-Related Parafoveal Previewing Support Free Visual Exploration.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: CamilleFakche (no license)

Status: code verified

[22262] doi:10.3389/fnbot.2024.1443678 [paper, data]

Unmanned aerial vehicles for human detection and recognition using neural-network model.

Journal: Frontiers in neurorobotics

Status: data only, 1 dataset cited

[22263] doi:10.3389/fneur.2024.1475582 [paper]

Integrative multi-omics approach using random forest and artificial neural network models for early diagnosis and immune infiltration characterization in ischemic stroke.

Journal: Frontiers in neurology

Status: data only

[22264] doi:10.3389/fpsyg.2024.1456373 [paper, data]

Greater neural pattern similarity to the native language is associated with better novel word learning.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[22265] doi:10.3390/bioengineering11121227 [paper, repository]

NeCA: 3D Coronary Artery Tree Reconstruction from Two 2D Projections via Neural Implicit Representation.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: WangStephen/NeCA (MIT)

Status: code verified, 20 files readable, 1 match

[22266] doi:10.3390/targets2040025 [paper, data]

Repurposing FDA-Approved Drugs Against Potential Drug Targets Involved in Brain Inflammation Contributing to Alzheimer's Disease.

Journal: Targets (Basel)

Status: data only, 1 dataset cited

[22267] doi:10.7554/elife.88614 [paper, data]

Pharyngeal mechanosensory neurons control food swallow in <i>Drosophila melanogaster</i>.

Journal: eLife

Status: data only, 1 dataset cited

[22268] doi:10.7554/elife.97184 [paper, repository]

Cortical beta oscillations map to shared brain networks modulated by dopamine.

Journal: eLife

Authors' code: netneurolab/hansen_receptors (CC-BY-NC-SA-4.0), meera-cm/ieeg_connectomics (MIT), leaddbs/leaddbs (GPL-3.0)

Status: code verified, 2,070 files readable, 8 matches

[22269] doi:10.7554/elife.98148 [paper, repository]

The transformation of sensory to perceptual braille letter representations in the visually deprived brain.

Journal: eLife

Authors' code: marleenhaupt/BrailleLetterRepresentations (MIT)

Status: code verified, 18 files readable, 6 matches

[22270] doi:10.7554/elife.98531 [paper, repository]

PDGFRα signaling regulates Srsf3 transcript binding to affect PI3K signaling and endosomal trafficking.

Journal: eLife

Authors' code: eric-d-larson/Forman_elife_2024 (GPL-3.0)

Status: code verified, 18 files readable, 4 matches

Tuesday, 3 December 2024 (32 papers)

[22271] doi:10.1016/j.biopsych.2024.11.017 [paper, repository]

Data-Driven Analysis Identifies Novel Modulation of Social Behavior in Female Mice Witnessing Chronic Social Defeat Stress.

Journal: Biological psychiatry

Authors' code: heike-s/FemaleStressPhenotype (no license)

Status: code verified, 10 files readable, 6 matches

[22272] doi:10.1016/j.celrep.2024.115037 [paper, repository]

Distinct structural and functional connectivity of genetically segregated thalamoreticular subnetworks.

Journal: Cell reports

Authors' code: Fu-Lab-Broad (no license), Zenodo 13963597 (CC-BY-4.0), fu-lab-broad/trn-abfbot (no license)

Status: code verified, 26 files readable, 2 matches

[22273] doi:10.1016/j.crmeth.2024.100911 [paper, repository]

Single chromatin fiber profiling and nucleosome position mapping in the human brain.

Journal: Cell reports methods

Authors' code: fiberseq/fibertools-rs (no license), mrvollger/k-mer-variant-phasing (MIT), fiberseq/fire (MIT)

Status: code verified, 164 files readable, 2 matches

[22274] doi:10.1016/j.xgen.2024.100703 [paper, repository]

Single-nucleus multi-omics analyses reveal cellular and molecular innovations in the anterior cingulate cortex during primate evolution.

Journal: Cell genomics

Authors' code: Zenodo 14021412 (CC-BY-4.0), KIZ-SubLab/ACC-sn-Multiomes (no license), zhanglabtools/CAME (MIT), swolock/scrublet (MIT), r3fang/SnapATAC (GPL-3.0), neurorestore/Libra (MIT), kundajelab/gkmexplain (no license), YuLab-SMU/clusterProfiler (no license)

Status: code verified, 299 files readable, 26 matches

[22275] doi:10.1038/s41467-024-54343-6 [paper, repository]

A dynamic subset of network interactions underlies tuning to natural movements in marmoset sensorimotor cortex.

Journal: Nature communications

Authors' code: hatsopoulos-lab/marmoset-trajectory_and_network_encoding_model (GPL-3.0), Zenodo 13840245 (CC-BY-4.0), Zenodo 13840246 (CC-BY-4.0)

Status: code verified, 277 files readable, 13 matches

[22276] doi:10.1038/s41467-024-54564-9 [paper, repository]

Multiple insular-prefrontal pathways underlie perception to execution during response inhibition in humans.

Journal: Nature communications

Authors' code: fsl.fmrib.ox.ac.uk/fsl/fslwiki (no license), fil.ion.ucl.ac.uk/spm (no license)

Status: code verified

[22277] doi:10.1038/s41467-024-54932-5 [paper, repository]

Multiplexing of temporal and spatial information in the lateral entorhinal cortex.

Journal: Nature communications

Authors' code: Zenodo 14029802 (CC-BY-4.0)

Status: code verified, 8 files readable, 2 matches

[22278] doi:10.1038/s41598-024-80679-6 [paper, repository]

Exploring neural architectures for simultaneously recognizing multiple visual attributes.

Journal: Scientific reports

Authors' code: Zhixian-Han (no license)

Status: code verified

[22279] doi:10.1038/s41598-024-81102-w [paper]

Dynamic changes in human brain connectivity following ultrasound neuromodulation.

Journal: Scientific reports

Status: code on request

[22280] doi:10.1038/s41598-024-81824-x [paper, repository]

Transformer-based transfer learning on self-reported voice recordings for Parkinson's disease diagnosis.

Journal: Scientific reports

Authors' code: Jetliqs/PDVAT (no license)

Status: code verified, 2 files readable, 3 matches

[22281] doi:10.1073/pnas.2404121121 [paper, repository]

A corollary discharge circuit in human speech.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: flinkerlab/AuditoryCorrolaryDischarge (other), flinkerlab/AuditoryCorollaryDischarge (other)

Status: code verified, 128 files readable, 6 matches

[22282] doi:10.1073/pnas.2404877121 [paper, data]

TRPC6 is a mechanosensitive channel essential for ultrasound neuromodulation in the mammalian brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22283] doi:10.1073/pnas.2410445121 [paper, repository]

Sculpting new visual categories into the human brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: NatCogLab/neuralsculpting (CC-BY-NC-4.0)

Status: code verified, 35 files readable, 10 matches

[22284] doi:10.1080/07853890.2024.2399967 [paper, data]

FOXG1 interaction with SATB2 promotes autophagy to alleviate neuroinflammation and mechanical abnormal pain in rats with lumbar disc herniation.

Journal: Annals of medicine

Status: data only, 2 datasets cited

[22285] doi:10.1093/braincomms/fcae415 [paper, repository]

Relationship between glioblastoma location and O⁶-methylguanine-DNA methyltransferase promoter methylation percentage.

Journal: Brain communications

Authors' code: GiulioSans/MGMT_analyses (GPL-3.0)

Status: empty repository, 2 files readable

[22286] doi:10.1093/braincomms/fcae434 [paper, repository]

A data-driven model of disability progression in progressive multiple sclerosis.

Journal: Brain communications

Authors' code: gitlab.inria.fr/epione/gp_progression_model_v2 (other)

Status: code verified, 12 files readable

[22287] doi:10.1159/000542886 [paper, data]

Biotin-Thiamine-Responsive Basal Ganglia Disease: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[22288] doi:10.1159/000542888 [paper, data]

Cerebrospinal Fluid Biomarkers of Central Nervous System Inflammation Predict Cortical Decline in Bipolar Disorder and Ventricular Enlargement in Healthy Controls.

Journal: Neuropsychobiology

Status: data only, 1 dataset cited

[22289] doi:10.1159/000542889 [paper, data]

Acute Myelin Oligodendrocyte Glycoprotein-IgG Optic Neuritis without Optic Nerve Enhancement.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[22290] doi:10.1162/imag_a_00397 [paper]

Age- and sex-related differences in human α4β2* nicotinic acetylcholine receptor binding evaluated with [&lt;sup&gt;18&lt;/sup&gt;F]nifene PET.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[22291] doi:10.1162/nol_a_00159 [paper, repository]

Activity in Occipito-Temporal Cortex Is Involved in Tool-Use Planning and Contributes to Tool-Related Semantic Neural Representations.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF r9hmd (no license)

Status: empty repository

[22292] doi:10.1186/s12868-024-00916-6 [paper, repository]

Older is order: entropy reduction in cortical spontaneous activity marks healthy aging.

Journal: BMC neuroscience

Authors' code: zuoxinian/ccs (GPL-2.0)

Status: code verified, 732 files readable, 4 matches

[22293] doi:10.1186/s12888-024-06272-3 [paper, data]

Theta power reduction and theta-gamma coupling desynchronization are associated with working memory interference and anxiety symptoms in panic disorder: a retrospective study.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[22294] doi:10.1371/journal.pbio.3002934 [paper, repository]

Distinct patterns of connectivity with the motor cortex reflect different components of sensorimotor learning.

Journal: PLoS biology

Authors' code: areshenk-opendata/2023-implicitexplicit (no license), Zenodo 14029185 (CC-BY-4.0), areshenk-rpackages/spdm (GPL-3.0), areshenk-opendata/2024_motorconnectivity (no license)

Status: code verified, 52 files readable, 3 matches

[22295] doi:10.1371/journal.pone.0313155 [paper, repository]

Investigating the Triple Code Model in numerical cognition using stereotactic electroencephalography.

Journal: PloS one

Authors' code: alexrockhill/numbers (BSD-3-Clause)

Status: code verified, 127 files readable, 7 matches

[22296] doi:10.3389/fnbot.2024.1491721 [paper, data]

EEG-based action anticipation in human-robot interaction: a comparative pilot study.

Journal: Frontiers in neurorobotics

Status: data only, 1 dataset cited

[22297] doi:10.3389/fncel.2024.1505048 [paper, repository]

MorphoGlia, an interactive method to identify and map microglia morphologies, demonstrates differences in hippocampal subregions of an Alzheimer's disease mouse model.

Journal: Frontiers in cellular neuroscience

Authors' code: Maya-Arteaga/MorphoGlia (Apache-2.0)

Status: code verified, 90 files readable, 6 matches

[22298] doi:10.3390/e26121048 [paper, repository]

Metastable Oscillatory Modes as a Signature of Entropy Management in the Brain.

Journal: Entropy (Basel, Switzerland)

Authors' code: fcast7/Hopf_Delay_Toolbox (no license), martaxavier/Hopf_MOMs_Entropy (no license)

Status: code verified, 17 files readable, 9 matches

[22299] doi:10.3892/mco.2024.2810 [paper, repository]

Microtubule actin crosslinking factor 1, a brain tumor oncoprotein (Review).

Journal: Molecular and clinical oncology

Authors' code: figshare 24391903 (CC-BY-4.0), figshare 24392593 (CC-BY-4.0), figshare 24393145 (CC-BY-4.0)

Status: empty repository

[22300] doi:10.7554/elife.87992 [paper, repository]

Multimodal neural correlates of childhood psychopathology.

Journal: eLife

Authors' code: thomasyeolab/cbig (MIT), ThomasYeoLab/ABCD_scripts (MIT), valkebets/multimodal_psychopathology_components (Apache-2.0)

Status: code verified, 2,039 files readable, 8 matches

[22301] doi:10.7554/elife.91663 [paper, data]

Sympathetic motor neuron dysfunction is a missing link in age-associated sympathetic overactivity.

Journal: eLife

Status: data only, 1 dataset cited

[22302] doi:10.7717/peerj.18664 [paper, data]

Surgery-induced neuroinflammatory transcriptional programs in medial prefrontal cortex of mice during early phase of perioperative neurocognitive disorders.

Journal: PeerJ

Status: data only, 1 dataset cited

Monday, 2 December 2024 (28 papers)

[22303] doi:10.1007/s12028-024-02168-y [paper]

Does Targeting CPP at CPPopt Actually Improve Cerebrovascular Reactivity? A Secondary Analysis of the COGiTATE Randomized Controlled Trial.

Journal: Neurocritical care

Status: code on request

[22304] doi:10.1016/j.heliyon.2024.e40813 [paper]

Advanced tissue technologies of blood-brain barrier organoids as high throughput toxicity readouts in drug development.

Journal: Heliyon

Status: code on request

[22305] doi:10.1016/j.xcrm.2024.101841 [paper]

Long-term clinical and safety outcomes from a single-site phase 1 study of neural stem cell transplantation for chronic thoracic spinal cord injury.

Journal: Cell reports. Medicine

Status: code on request

[22306] doi:10.1038/s41467-024-54972-x [paper, data]

Portable, low-field magnetic resonance imaging for evaluation of Alzheimer's disease.

Journal: Nature communications

Status: data only, 1 dataset cited

[22307] doi:10.1038/s41598-024-80742-2 [paper, data]

The effect of cardiac phase on distractor suppression and motor inhibition in a stop-signal task.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22308] doi:10.1038/s44318-024-00322-y [paper, data]

De novo variants in LRRC8C resulting in constitutive channel activation cause a human multisystem disorder.

Journal: The EMBO journal

Status: data only, 4 datasets cited

[22309] doi:10.1073/pnas.2405448121 [paper, repository]

Prenatal social disadvantage is associated with alterations in functional networks at birth.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF fe6dh (no license), ashleynielsen/prenatal-social-disadvantage-and-infant-fc (no license)

Status: empty repository, 1 file readable

[22310] doi:10.1093/noajnl/vdae205 [paper, repository]

Pediatric brain tumor classification using deep learning on MR images with age fusion.

Journal: Neuro-oncology advances

Authors' code: IulianEmilTampu/PediatricBrainTumorClassification-MRI (no license)

Status: code verified, 20 files readable, 8 matches

[22311] doi:10.1117/1.jbo.30.2.023513 [paper, repository]

Digital instrument simulator to optimize the development of hyperspectral systems: application for intraoperative functional brain mapping.

Journal: Journal of biomedical optics

Authors' code: CCaredda/White-Monte-Carlo (no license)

Status: code verified, 112 files readable, 13 matches

[22312] doi:10.1162/imag_a_00362 [paper, repository]

Leveraging multi-echo EPI to enhance BOLD sensitivity in task-based olfactory fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: luxwig/tedana (LGPL-2.1)

Status: code verified, 58 files readable, 1 match

[22313] doi:10.1162/imag_a_00376 [paper]

Capturing inter-individual variability in stress dynamics with heart rate traces reveals activity in the bilateral hippocampus, amygdala, and insula.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[22314] doi:10.1162/imag_a_00378 [paper, repository]

Group-common and individual-specific effects of structure-function coupling in human brain networks with graph neural networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: CuiLabCIBR/GNN_SC_FC (no license)

Status: code verified, 47 files readable, 2 matches

[22315] doi:10.1162/imag_a_00380 [paper, repository]

Balancing excitation and inhibition: The role of neural network dynamics in working memory gating.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: O-BRAIN/WORMCRI (no license)

Status: code verified, 36 files readable, 12 matches

[22316] doi:10.1186/s12987-024-00598-6 [paper, data]

Reduced oxycodone brain delivery in rats due to lipopolysaccharide-induced inflammation: microdialysis insights into brain disposition and sex-specific pharmacokinetics.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[22317] doi:10.1186/s13059-024-03438-w [paper, repository]

Functional screening reveals genetic dependencies and diverging cell cycle control in atypical teratoid rhabdoid tumors.

Journal: Genome biology

Authors' code: imgag/megSAP (GPL-3.0), imgag/ngs-bits (MIT), Zenodo 10137598 (CC-BY-4.0), merklab/atrt_project (no license)

Status: code verified, 1,041 files readable, 6 matches

[22318] doi:10.1186/s13104-024-07009-x [paper, repository]

Data on neurophysiological and psychological responses to audio immersive experience in stereo and 3D audio formats.

Journal: BMC research notes

Authors' code: Zenodo 3474285 (cc-by-3.0)

Status: code verified

[22319] doi:10.1371/journal.pbio.3002912 [paper, repository]

Meta-analysis of single-cell RNA sequencing co-expression in human neural organoids reveals their high variability in recapitulating primary tissue.

Journal: PLoS biology

Authors' code: Zenodo 13946248 (CC-BY-4.0), JonathanMWerner/meta_organoid_analysis (MIT)

Status: code verified, 45 files readable, 22 matches

[22320] doi:10.1371/journal.pbio.3002918 [paper, data]

Temperature cues are integrated in a flexible circadian neuropeptidergic feedback circuit to remodel sleep-wake patterns in flies.

Journal: PLoS biology

Status: data only, 1 dataset cited

[22321] doi:10.1371/journal.pbio.3002929 [paper, repository]

Axons compensate for biophysical constraints of variable size to uniformize their action potentials.

Journal: PLoS biology

Authors' code: Zenodo 13977231 (CC-BY-4.0), brunnerjanos/axonal-ap (MIT), repo.researchdata.hu/dataset.xhtml (no license)

Status: code verified, 2 files readable

[22322] doi:10.1371/journal.pbio.3002937 [paper, repository]

The thalamus encodes and updates context representations during hierarchical cognitive control.

Journal: PLoS biology

Authors' code: HwangLabNeuroCogDynamics/Thalamocortical_Hierarchical_Control (no license), Zenodo 14086485 (CC-BY-4.0)

Status: code verified, 8 files readable, 6 matches

[22323] doi:10.1371/journal.pcbi.1012595 [paper, repository]

Homeodynamic feedback inhibition control in whole-brain simulations.

Journal: PLoS computational biology

Authors' code: BrainModes/dFIC_code (EUPL-1.2)

Status: code verified, 7 files readable, 5 matches

[22324] doi:10.1371/journal.pcbi.1012602 [paper, repository]

Social conformity is a heuristic when individual risky decision-making is disrupted.

Journal: PLoS computational biology

Authors' code: code.vt.edu/maorloff/insula-lesions-and-social-heuristic.git (no license)

Status: code verified

[22325] doi:10.1371/journal.pcbi.1012628 [paper, repository]

Theta oscillations optimize a speed-precision trade-off in phase coding neurons.

Journal: PLoS computational biology

Authors' code: adriamilcar/Phase-Coding-in-LIF (no license)

Status: code verified, 8 files readable

[22326] doi:10.1371/journal.pcbi.1012629 [paper, repository]

Image-based force inference by biomechanical simulation.

Journal: PLoS computational biology

Authors' code: Zenodo 10223738 (CC-BY-4.0), pgmsembryogenesis/fides (no license)

Status: code verified, 85 files readable, 14 matches

[22327] doi:10.1371/journal.pone.0313091 [paper, data]

Fatty acid binding protein 7 plays an important modulatory sex-dependent role on brain endocannabinoid levels and THC metabolism.

Journal: PloS one

Status: data only, 1 dataset cited

[22328] doi:10.3390/bioengineering11121218 [paper, repository]

Architecture-Aware Augmentation: A Hybrid Deep Learning and Machine Learning Approach for Enhanced Parkinson's Disease Detection.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: kaggle.com/code/basel99 (no license)

Status: dead link

[22329] doi:10.3390/biomedicines12122755 [paper, repository]

Direct Pathway Neurons in the Mouse Ventral Striatum Are Active During Goal-Directed Action but Not Reward Consumption During Operant Conditioning.

Journal: Biomedicines

Authors' code: DSulzerLab/Operant_Phase_Training_Analysis (no license)

Status: code verified, 12 files readable

[22330] doi:10.7554/elife.97793 [paper, data]

The neural dynamics of positive and negative expectations of pain.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 1 December 2024 (74 papers, 70 on this page)

[22331] doi:10.1002/brb3.70180 [paper]

Investigating Task-Free Functional Connectivity Patterns in Newborns Using Functional Near-Infrared Spectroscopy.

Journal: Brain and behavior

Status: code on request

[22332] doi:10.1002/brb3.70187 [paper]

Propofol Suppresses Ferroptosis via Modulating eNOS/NO Signaling Pathway to Improve Traumatic Brain Injury.

Journal: Brain and behavior

Status: data only

[22333] doi:10.1002/cpz1.70067 [paper, repository]

Isolation and Molecular Profiling of Nuclei of Specific Neuronal Types from Human Cerebral Cortex and Striatum.

Journal: Current protocols

Authors' code: macs3-project/MACS (BSD-3-Clause), bioconductor.org/packages/release (no license)

Status: code verified, 214 files readable

[22334] doi:10.1002/ctm2.70125 [paper, repository]

Chitinase 3-like 1 is neurotoxic in multiple sclerosis patient-derived cortical neurons.

Journal: Clinical and translational medicine

Authors' code: Zenodo 1119026 (MIT)

Status: code verified, 949 files readable

[22335] doi:10.1002/hbm.26760 [paper, data]

Stepwise pathways from the olfactory cortex to central hub regions in the human brain.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[22336] doi:10.1002/hbm.26799 [paper]

Imaging-genomic spatial-modality attentive fusion for studying neuropsychiatric disorders.

Journal: Human brain mapping

Status: code on request

[22337] doi:10.1002/hbm.70037 [paper, repository]

A Method for Multimodal IVA Fusion Within a MISA Unified Model Reveals Markers of Age, Sex, Cognition, and Schizophrenia in Large Neuroimaging Studies.

Journal: Human brain mapping

Authors' code: trendscenter/MMIVA (CC-BY-NC-SA-4.0)

Status: code verified, 21 files readable, 4 matches

[22338] doi:10.1002/hbm.70044 [paper, repository]

Accelerating Heritability, Genetic Correlation, and Genome-Wide Association Imaging Genetic Analyses in Complex Pedigrees.

Journal: Human brain mapping

Authors' code: nitrc.org/projects/enigma_dti (no license)

Status: code verified

[22339] doi:10.1002/hbm.70062 [paper, repository]

Track-Weighted Dynamic Functional Connectivity Profiles and Topographic Organization of the Human Pulvinar.

Journal: Human brain mapping

Authors' code: neuroquery/neuroquery_image_search (BSD-3-Clause)

Status: code verified, 11 files readable

[22340] doi:10.1002/hbm.70064 [paper, repository]

Impact of Deprivation and Preferential Usage on Functional Connectivity Between Early Visual Cortex and Category-Selective Visual Regions.

Journal: Human brain mapping

Authors' code: Visscher-Lab/image-to-surface (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

[22341] doi:10.1002/hbm.70071 [paper, repository]

Tractography-Based Automated Identification of Retinogeniculate Visual Pathway With Novel Microstructure-Informed Supervised Contrastive Learning.

Journal: Human brain mapping

Authors' code: pnlbwh/pnlutil (no license), SlicerDMRI/DeepRGVP (no license)

Status: code verified, 256 files readable, 1 match

[22342] doi:10.1002/hbm.70072 [paper, data]

Early Salience Signals Predict Interindividual Asymmetry in Decision Accuracy Across Rewarding and Punishing Contexts.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[22343] doi:10.1002/hbm.70078 [paper, data]

Structural Disconnections Caused by White Matter Hyperintensities in Post-Stroke Spatial Neglect.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[22344] doi:10.1002/hbm.70081 [paper, repository]

Beyond Focal Lesions: Dynamical Network Effects of White Matter Hyperintensities.

Journal: Human brain mapping

Authors' code: computational-neurology (no license)

Status: code verified

[22345] doi:10.1002/hbm.70083 [paper, repository]

Connectivity, Pathology, and ApoE4 Interactions Predict Longitudinal Tau Spatial Progression and Memory.

Journal: Human brain mapping

Authors' code: adni.loni.usc.edu (no license)

Status: code verified

[22346] doi:10.1002/hbm.70085 [paper, repository]

Assessment of ComBat Harmonization Performance on Structural Magnetic Resonance Imaging Measurements.

Journal: Human brain mapping

Authors' code: Jfortin1/ComBatHarmonization (no license), OSF ksmja (no license)

Status: code verified, 17 files readable

[22347] doi:10.1002/hbm.70086 [paper, repository]

Catecholaminergic Modulation of Large-Scale Network Dynamics Is Tied to the Reconfiguration of Corticostriatal Connectivity.

Journal: Human brain mapping

Authors' code: bbfrederick/capcalc (Apache-2.0)

Status: code verified, 38 files readable

[22348] doi:10.1002/hbm.70095 [paper, repository]

Changes in Functional Connectivity Relate to Modulation of Cognitive Control by Subthalamic Stimulation.

Journal: Human brain mapping

Authors' code: netstim/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 6 matches

[22349] doi:10.1002/hbm.70096 [paper, repository]

Predicting Subject Traits From Brain Spectral Signatures: An Application to Brain Ageing.

Journal: Human brain mapping

Authors' code: katejarne/Kernel_Max_mean_discrepancy_EEG_Age (MIT)

Status: code verified, 12 files readable, 1 match

[22350] doi:10.1002/hbm.70097 [paper, data]

Exploring the Effects of Prefrontal Transcranial Direct Current Stimulation on Brain Metabolites: A Concurrent tDCS-MRS Study.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[22351] doi:10.1002/hbm.70099 [paper, repository]

Discovery, Replicability, and Generalizability of a Left Anterior Hippocampus' Morphological Network Linked to Self-Regulation.

Journal: Human brain mapping

Authors' code: anaston/cca_pls_toolkit (GPL-3.0)

Status: code verified, 104 files readable, 2 matches

[22352] doi:10.1002/hbm.70100 [paper]

Global Impact of Aging on the Hemodynamic Response Function in the Gray Matter of Human Cerebral Cortex.

Journal: Human brain mapping

Status: code on request

[22353] doi:10.1002/hbm.70102 [paper, data]

Approximating R1 and R2: A Quantitative Approach to Clinical Weighted MRI.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[22354] doi:10.1002/hbm.70104 [paper, repository]

segcsvd&lt;sub&gt;WMH&lt;/sub&gt;: A Convolutional Neural Network-Based Tool for Quantifying White Matter Hyperintensities in Heterogeneous Patient Cohorts.

Journal: Human brain mapping

Authors' code: AICONSlab/segcsvd (GPL-3.0)

Status: empty repository, 2 files readable

[22355] doi:10.1002/hbm.70108 [paper, data]

Interoceptive Brain Processing Influences Moral Decision Making.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[22356] doi:10.1002/hbm.70115 [paper, repository]

Iowa Brain-Behavior Modeling Toolkit: An Open-Source MATLAB Tool for Inferential and Predictive Modeling of Imaging-Behavior and Lesion-Deficit Relationships.

Journal: Human brain mapping

Authors' code: robisoe/Brunner-Munzel-test-for-matlab (MIT), jcgriffis/ibb_toolkit (GPL-3.0)

Status: code verified, 188 files readable, 31 matches

[22357] doi:10.1002/hbm.70118 [paper, data]

A Roadmap for Implanting Electrode Arrays to Evoke Tactile Sensations Through Intracortical Stimulation.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[22358] doi:10.1002/hbm.70121 [paper, repository]

Understanding Cognitive Aging Through White Matter: A Fixel-Based Analysis.

Journal: Human brain mapping

Authors' code: emmatinney/ignite_fba (no license)

Status: code verified, 41 files readable, 6 matches

[22359] doi:10.1002/jnr.70008 [paper, repository]

An Open-Source Tool for Investigation of Differential RNA Expression Between Spinal Cord Cells of Male and Female Mice.

Journal: Journal of neuroscience research

Authors' code: JustinBellavance/snRNA-seq-sex-comparison-spinal-cord (MIT), gsea-msigdb.org/gsea/msigdb (no license)

Status: code verified, 14 files readable, 3 matches

[22360] doi:10.1016/j.bionps.2024.100102 [paper, repository]

Multimodal prediction of the need of clozapine in treatment resistant schizophrenia; a pilot study in first-episode psychosis.

Journal: Biomarkers in neuropsychiatry

Authors' code: version.aalto.fi/gitlab/bml (no license), gostopa1/DeepNNs (no license)

Status: code verified, 48 files readable, 1 match

[22361] doi:10.1016/j.isci.2024.111514 [paper, data]

Automatic imitation of intransitive actions in macaws.

Journal: iScience

Status: code on request, 1 dataset cited

[22362] doi:10.1016/j.isci.2024.111515 [paper]

TBC1D24 interacts with the v-ATPase and regulates intraorganellar pH in neurons.

Journal: iScience

Status: code on request

[22363] doi:10.1016/j.xgen.2024.100721 [paper, repository]

Effects of gene dosage on cognitive ability: A function-based association study across brain and non-brain processes.

Journal: Cell genomics

Authors' code: martineaujeanlouis.github.io/mind-genesparallelcnv (no license), labjacquemont/DigCNV (GPL-3.0), labjacquemont/CNV_cognitive_ability (no license)

Status: code verified, 17 files readable, 3 matches

[22364] doi:10.1017/s003329172400285x [paper, data]

Overlapping and differential neuropharmacological mechanisms of stimulants and nonstimulants for attention-deficit/hyperactivity disorder: a comparative neuroimaging analysis.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[22365] doi:10.1017/s0033291724003040 [paper, data]

Prefrontally mediated inhibition of memory systems in dissociative amnesia.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[22366] doi:10.1017/s0033291724003167 [paper, repository]

Higher amplitudes of visual networks are associated with trait- but not state-depression.

Journal: Psychological medicine

Authors' code: OSF txjmd (no license)

Status: empty repository

[22367] doi:10.1038/s41467-024-54736-7 [paper, repository]

Organizing space through saccades and fixations between primate posterior parietal cortex and hippocampus.

Journal: Nature communications

Authors' code: OSF 9jn7k (no license)

Status: code verified, 23 files readable, 14 matches

[22368] doi:10.1038/s41531-024-00832-w [paper, repository]

Personalized progression modelling and prediction in Parkinson's disease with a novel multi-modal graph approach.

Journal: NPJ Parkinson's disease

Authors' code: SereneLian/AdaMedGraph (MIT)

Status: code verified, 18 files readable, 9 matches

[22369] doi:10.1038/s41598-024-80567-z [paper]

Development of a remote therapeutic monitoring platform: applications for movement disorders.

Journal: Scientific reports

Status: code on request

[22370] doi:10.1093/brain/awae315 [paper, repository]

Enhancing cognitive performance prediction by white matter hyperintensity connectivity assessment.

Journal: Brain : a journal of neurology

Authors' code: bchcohenlab/cbig (MIT), csi-hamburg/2024_petersen_wmh_disconnectivity_memory_clinic (MIT)

Status: code verified, 2,009 files readable, 15 matches

[22371] doi:10.1093/cercor/bhae473 [paper, repository]

Arousal effects on oscillatory dynamics in the non-human primate brain.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 14064126 (CC-BY-4.0)

Status: code verified

[22372] doi:10.1093/cercor/bhae479 [paper, repository]

Concurrent processing of the prosodic hierarchy is supported by cortical entrainment and phase-amplitude coupling.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 82nxu (no license)

Status: code verified, 4 files readable, 5 matches

[22373] doi:10.1093/cercor/bhae483 [paper, repository]

Context changes retrieval of prospective outcomes during decision deliberation.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: CCNBern/OutcomeRepresentation (no license)

Status: code verified, 11 files readable, 3 matches

[22374] doi:10.1093/ijnp/pyae038 [paper, data]

Investigating the Impact of IL-6 and CXCL8 on Neurodegeneration and Cognitive Decline in Alzheimer Disease.

Journal: The international journal of neuropsychopharmacology

Status: data only, 1 dataset cited

[22375] doi:10.1093/nar/gkae1129 [paper, repository]

Identifying key underlying regulatory networks and predicting targets of orphan C/D box SNORD116 snoRNAs in Prader-Willi syndrome.

Journal: Nucleic acids research

Authors' code: cotneylab/SNORD116_targets_functions (no license)

Status: code verified, 32 files readable, 14 matches

[22376] doi:10.1093/scan/nsae080 [paper, repository]

Neural empathy mechanisms are shared for physical and social pain, and increase from adolescence to older adulthood.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF f9c2r (no license)

Status: code verified, 7 files readable, 1 match

[22377] doi:10.1093/scan/nsae086 [paper, repository]

Neural divergence between individuals with and without minor depression during dynamic emotion processing: a movie-fMRI Study.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 9hbcr (no license)

Status: code verified, 12 files readable, 2 matches

[22378] doi:10.1093/scan/nsae087 [paper, repository]

Portable EEG in groups shows increased brain coupling to strong health messages.

Journal: Social cognitive and affective neuroscience

Authors' code: parralab.org/isc (no license)

Status: code verified

[22379] doi:10.1093/scan/nsae094 [paper]

Altered neural response to social awkwardness in schizophrenia spectrum disorders.

Journal: Social cognitive and affective neuroscience

Status: code on request

[22380] doi:10.1093/scan/nsae095 [paper, data]

Unveiling the neural dynamics of the theory of mind: a fMRI study on belief processing phases.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[22381] doi:10.1093/scan/nsae096 [paper, repository]

Striatal-hippocampal functional connectivity contributes to real-life positive anticipatory experiences and subjective well-being.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF t2ukb (no license)

Status: code verified, 4 files readable, 2 matches

[22382] doi:10.1093/schbul/sbae142 [paper, data]

Static and Dynamic Dysconnectivity in Early Psychosis: Relationship With Symptom Dimensions.

Journal: Schizophrenia bulletin

Status: data only, 2 datasets cited

[22383] doi:10.1093/sleep/zsae148 [paper, repository]

Novel biomarkers derived from the Maintenance of Wakefulness Test as predictors of sleepiness and response to treatment.

Journal: Sleep

Authors' code: Stanford-STAGES (no license)

Status: code verified

[22384] doi:10.1093/stcltm/szae070 [paper, data]

Effects of microgravity on human iPSC-derived neural organoids on the International Space Station.

Journal: Stem cells translational medicine

Status: data only, 1 dataset cited

[22385] doi:10.1097/js9.0000000000001831 [paper, data]

The mediating effect of blood biomarkers in the associations between inflammatory bowel disease and incident psychiatric disorders: a prospective cohort study.

Journal: International journal of surgery (London, England)

Status: data only, 1 dataset cited

[22386] doi:10.1099/mgen.0.001322 [paper, repository]

The primate gut microbiota contributes to interspecific differences in host metabolism.

Journal: Microbial genomics

Authors' code: Kramato-lab/GF_mouse_primate_23 (GPL-3.0), Mallott-Lab/PrimateMicrobiomeandBrainGrowth (MIT), z0on/tag-based_rnaseq (no license)

Status: code verified, 47 files readable, 8 matches

[22387] doi:10.1111/cns.70134 [paper, data]

Caffeine's Neuroprotective Effect on Memory Impairment: Suppression of Adenosine A&lt;sub&gt;2&lt;/sub&gt;A Receptor and Enhancement of Tyrosine Hydroxylase in Dopaminergic Neurons Under Hypobaric Hypoxia Conditions.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[22388] doi:10.1111/cns.70158 [paper, data]

A Novel Compound Ligusticum Cycloprolactam Alleviates Neuroinflammation After Ischemic Stroke via the FPR1/NLRP3 Signaling Axis.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[22389] doi:10.1111/cns.70175 [paper, repository]

Altered Hippocampal Subfields Functional Connectivity in Benign Paroxysmal Positional Vertigo Patients With Residual Dizziness: A Resting-State fMRI Study.

Journal: CNS neuroscience & therapeutics

Authors' code: sandywang/GRETNA (GPL-3.0)

Status: code verified, 453 files readable, 6 matches

[22390] doi:10.1111/cns.70185 [paper, data]

Identification of Brain Cell Type-Specific Therapeutic Targets for Glioma From Genetics.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[22391] doi:10.1111/cogs.70023 [paper, repository]

Task and Timing Effects in Argument Role Sensitivity: Evidence From Production, EEG, and Computational Modeling.

Journal: Cognitive science

Authors' code: OSF b4h6q (no license), OSF scb5m (no license)

Status: code verified, 6 files readable, 7 matches

[22392] doi:10.1111/ejn.16618 [paper, repository]

Using cluster-based permutation tests to estimate MEG/EEG onsets: How bad is it?

Journal: The European journal of neuroscience

Authors' code: GRousselet/onsetsim (GPL-3.0)

Status: code verified, 34 files readable, 11 matches

[22393] doi:10.1111/febs.17333 [paper, data]

Oxidative pathways of apo, partially, and fully Zn(II)- and Cd(II)-metalated human metallothionein-3 are dominated by disulfide bond formation.

Journal: The FEBS journal

Status: data only, 4 datasets cited

[22394] doi:10.1111/gbb.70007 [paper, repository]

The brain atlas of a subsocial bee reflects that of eusocial Hymenoptera.

Journal: Genes, brain, and behavior

Authors' code: Zenodo 12557898 (CC-BY-4.0)

Status: code verified, 2 files readable

[22395] doi:10.1111/jcmm.70286 [paper, data]

Sex Differences in Ependymoma Methylation by Methylation-Defined Subgroup.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[22396] doi:10.1158/2159-8290.cd-24-0231 [paper, data]

NVL-655 Is a Selective and Brain-Penetrant Inhibitor of Diverse ALK-Mutant Oncoproteins, Including Lorlatinib-Resistant Compound Mutations.

Journal: Cancer discovery

Status: data only, 1 dataset cited

[22397] doi:10.1158/2767-9764.crc-24-0281 [paper, repository]

Tumor Expression of CD83 Reduces Glioma Progression and Is Associated with Reduced Immunosuppression.

Journal: Cancer research communications

Authors' code: akdess/cd83 (no license)

Status: code verified, 7 files readable, 1 match

[22398] doi:10.1162/jocn_a_02121 [paper, repository]

Understanding Cortical Streams from a Computational Perspective.

Journal: Journal of cognitive neuroscience

Authors' code: Zhixian-Han (no license)

Status: code verified

[22399] doi:10.1167/tvst.13.12.5 [paper, repository]

CNN-Based Device-Agnostic Feature Extraction From ONH OCT Scans.

Journal: Translational vision science & technology

Authors' code: Eyened/OCT-ONH (AGPL-3.0)

Status: code verified, 12 files readable, 2 matches

[22400] doi:10.1186/s13023-024-03460-y [paper, data]

Diagnostic flow analysis of tuberous sclerosis complex in Japan: a retrospective claims database study.

Journal: Orphanet journal of rare diseases

Status: data only, 2 datasets cited

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