Every paper, by date: page 99

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 99 of 200: 16 December 2024 to 5 December 2024.

Monday, 16 December 2024 (39 papers, 33 on this page)

[21953] doi:10.1016/j.heliyon.2024.e41291 [paper, data]

Effective adaptation of flight muscles to tebuconazole-induced oxidative stress in honey bees.

Journal: Heliyon

Status: data only, 1 dataset cited

[21954] doi:10.1016/j.isci.2024.111611 [paper, data]

Glycogen homeostasis and mitochondrial DNA expression require motor neuron to muscle TGF-β/Activin signaling in Drosophila.

Journal: iScience

Status: code on request, 1 dataset cited

[21955] doi:10.1016/j.neuroimage.2024.120977 [paper, repository]

An implemented predictive coding model of lexico-semantic processing explains the dynamics of univariate and multivariate activity within the left ventromedial temporal lobe during reading comprehension.

Journal: NeuroImage

Authors' code: samer-noureddine/REPN400 (MIT)

Status: code verified, 4 files readable

[21956] doi:10.1016/j.neuron.2024.11.006 [paper, repository]

Acute MeCP2 loss in adult mice reveals transcriptional and chromatin changes that precede neurological dysfunction and inform pathogenesis.

Journal: Neuron

Authors' code: alexdobin/STAR (MIT), FelixKrueger/Bismark (GPL-3.0)

Status: code verified, 601 files readable, 4 matches

[21957] doi:10.1016/j.patter.2024.101117 [paper, repository]

Neuron signal attenuation activation mechanism for deep learning.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 13984766 (CC-BY-4.0)

Status: code verified, 17 files readable, 7 matches

[21958] doi:10.1017/s0033291724002885 [paper, repository]

Causal mechanisms of quadruple networks in pediatric bipolar disorder.

Journal: Psychological medicine

Authors' code: bnicenboim/bcogsci (other), xiuwang0614/Pediatric-bipolar-disorder (no license)

Status: code verified, 86 files readable, 3 matches

[21959] doi:10.1038/s41467-024-54819-5 [paper, data]

ABHD6 loss-of-function in mesoaccumbens postsynaptic but not presynaptic neurons prevents diet-induced obesity in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[21960] doi:10.1038/s41467-024-55242-6 [paper, repository]

A critical role of action-related functional networks in Gilles de la Tourette syndrome.

Journal: Nature communications

Authors' code: OSF upjvb (no license), leaddbs/leaddbs (GPL-3.0)

Status: code verified, 2,014 files readable, 10 matches

[21961] doi:10.1038/s41598-024-80274-9 [paper, repository]

A quantitative multi-parameter mapping protocol standardized for clinical research in multiple sclerosis.

Journal: Scientific reports

Authors' code: clinicalmpm.github.io (no license)

Status: code verified

[21962] doi:10.1038/s43588-024-00738-w [paper, repository]

An integrative data-driven model simulating C. elegans brain, body and environment interactions.

Journal: Nature computational science

Authors' code: jessie940611/baaiworm (Apache-2.0), Zenodo 13943857 (CC-BY-4.0)

Status: code verified, 1,428 files readable, 8 matches

[21963] doi:10.1073/pnas.2405395121 [paper, data]

Breathing orchestrates synchronization of sleep oscillations in the human hippocampus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[21964] doi:10.1073/pnas.2405850121 [paper, repository]

Cortisol awakening response prompts dynamic reconfiguration of brain networks in emotional and executive functioning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: QinBrainLab/2024_CAR_BrainNetwork (no license)

Status: code verified, 208 files readable, 5 matches

[21965] doi:10.1073/pnas.2411918121 [paper, repository]

Accelerated cell-type-specific regulatory evolution of the human brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: dmj6288/Accelerated-Cell-type-Evolution-in-the-Human-Brain (no license)

Status: code verified, 466 files readable, 6 matches

[21966] doi:10.1093/braincomms/fcae455 [paper, repository]

Salivary oxytocin and amygdalar alterations in functional neurological disorders.

Journal: Brain communications

Authors' code: webersamantha/Oxytocin_FND (no license)

Status: code verified, 45 files readable, 7 matches

[21967] doi:10.1111/1556-4029.15677 [paper, repository]

Potential postmortem microbial biomarkers of infant and younger children death investigation.

Journal: Journal of forensic sciences

Authors' code: jenpechal/pmm-pediatric (no license)

Status: empty repository, 1 file readable

[21968] doi:10.1162/imag_a_00377 [paper, repository]

Enhancing MR vascular Fingerprinting with realistic microvascular geometries.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nifm-gin (no license)

Status: code verified

[21969] doi:10.1162/imag_a_00391 [paper, repository]

Surfing beta burst waveforms to improve motor imagery-based BCI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sotpapad/bebopbci (GPL-3.0)

Status: code verified, 53 files readable, 18 matches

[21970] doi:10.1162/imag_a_00394 [paper, data]

Brain-wide functional connectome analysis of 40,000 individuals reveals brain networks that show aging effects in older adults.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[21971] doi:10.1162/imag_a_00398 [paper, repository]

Pre-stimulus activity mediates event-related theta synchronization and alpha desynchronization during memory formation in healthy aging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF da8k3 (no license)

Status: code verified, 25 files readable, 11 matches

[21972] doi:10.1162/imag_a_00399 [paper, repository]

The temporal specificity of BOLD fMRI is systematically related to anatomical and vascular features of the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: dangom/love-experiments (MIT), dangom/gomez2024temporal (no license)

Status: code verified, 5 files readable

[21973] doi:10.1162/imag_a_00400 [paper, repository]

Trial-by-trial detection of cognitive events in neural time-series.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gweindel/hmp (BSD-3-Clause), lspieser/myonset (GPL-3.0), OSF 29tgr (no license)

Status: code verified, 98 files readable, 14 matches

[21974] doi:10.1371/journal.pcbi.1012674 [paper, repository]

Neuro-cognitive multilevel causal modeling: A framework that bridges the explanatory gap between neuronal activity and cognition.

Journal: PLoS computational biology

Authors' code: moritzgw/nc-mcm (GPL-3.0)

Status: code verified, 19 files readable, 7 matches

[21975] doi:10.1371/journal.pcbi.1012688 [paper, repository]

Dopamine facilitates the response to glutamatergic inputs in astrocyte cell models.

Journal: PLoS computational biology

Authors' code: ThiagoTakechi/CompartmentalAstrocyteModel (MIT), ThiagoTakechi/SimplifiedAstrocyteModel (MIT)

Status: code verified, 13 files readable

[21976] doi:10.1371/journal.pone.0314598 [paper, repository]

Revisiting the standard for modeling functional brain network activity: Application to consciousness.

Journal: PloS one

Authors' code: Zenodo 10572216 (CC-BY-4.0)

Status: code verified

[21977] doi:10.1371/journal.ppat.1012797 [paper, data]

Sniffer restricts arboviral brain infections by regulating ROS levels and protecting blood-brain barrier integrity in Drosophila and mosquitoes.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[21978] doi:10.3389/fnagi.2024.1480332 [paper, data]

The study on cuproptosis in Alzheimer's disease based on the cuproptosis key gene <i>FDX1</i>.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[21979] doi:10.3389/fneur.2024.1493336 [paper]

Quantitative evaluation of electrographic response to electroconvulsive therapy in super-refractory status epilepticus.

Journal: Frontiers in neurology

Status: code on request

[21980] doi:10.7554/elife.89836 [paper, data]

Attention modulates human visual responses to objects by tuning sharpening.

Journal: eLife

Status: data only, 1 dataset cited

[21981] doi:10.7554/elife.89892 [paper, repository]

Unsupervised discovery of family specific vocal usage in the Mongolian gerbil.

Journal: eLife

Authors' code: ni/nidaqmx-python (MIT), ralphpeterson/gerbil-vocal-dialects (MIT)

Status: code verified, 366 files readable, 10 matches

[21982] doi:10.7554/elife.95547 [paper, data]

Microstructural asymmetries of the planum temporale predict functional lateralization of auditory-language processing.

Journal: eLife

Status: data only, 1 dataset cited

[21983] doi:10.7554/elife.96566 [paper, repository]

Homeostatic synaptic normalization optimizes learning in network models of neural population codes.

Journal: eLife

Authors' code: schneidmanlab/maximum_entropy_package (MIT)

Status: code verified, 8 files readable, 2 matches

[21984] doi:10.7554/elife.99914 [paper, data]

Biochemical and neurophysiological effects of deficiency of the mitochondrial import protein TIMM50.

Journal: eLife

Status: data only, 1 dataset cited

[21985] doi:10.7717/peerj.18679 [paper, data]

Association between hand grip strength and quality of life in children with cerebral palsy: a cross-sectional study.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 15 December 2024 (6 papers)

[21986] doi:10.1007/s10484-024-09675-w [paper, repository]

Theta/Beta Ratio Neurofeedback Effects on Resting and Task-Related Theta Activity in Children with ADHD.

Journal: Applied psychophysiology and biofeedback

Authors' code: brainclinics/TDBRAIN (GPL-3.0), brainclinics.com/resources (no license)

Status: code verified, 9 files readable, 1 match

[21987] doi:10.1016/j.heliyon.2024.e41166 [paper, repository]

Molecular dynamics simulation of wild and mutant proteasome subunit beta type 8 (PSMB8) protein: Implications for restoration of inflammation in experimental autoimmune encephalomyelitis pathogenesis.

Journal: Heliyon

Authors' code: paulshamrat/ColabMDA (MIT)

Status: code verified, 31 files readable, 2 matches

[21988] doi:10.1111/ejn.16639 [paper, data]

Right middle occipital gyrus is associated with egocentric spatial orientation during body tilt: Evidence from a repetitive transcranial magnetic stimulation study.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[21989] doi:10.1111/epi.18204 [paper, data]

Girdin deficiency causes developmental and epileptic encephalopathy with hippocampal sclerosis and interneuronopathy.

Journal: Epilepsia

Status: data only, 1 dataset cited

[21990] doi:10.3390/bioengineering11121274 [paper, repository]

A Hybrid Transformer-Convolutional Neural Network for Segmentation of Intracerebral Hemorrhage and Perihematomal Edema on Non-Contrast Head Computed Tomography (CT) with Uncertainty Quantification to Improve Confidence.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: anhtrnyaleedu/ich_phe_segmentation (no license)

Status: code verified, 6 files readable, 3 matches

[21991] doi:10.3390/genes15121602 [paper, repository]

Transfer RNA Levels Are Tuned to Support Differentiation During Drosophila Neurogenesis.

Journal: Genes

Authors' code: rhondene/codon-usage-in-python (no license)

Status: code verified, 29 files readable, 2 matches

Saturday, 14 December 2024 (3 papers)

[21992] doi:10.1016/j.bpsgos.2024.100432 [paper, data]

Neuron-Specific Glycine Metabolism Links Transfer RNA Epitranscriptomic Regulation to Complex Behaviors.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[21993] doi:10.1016/j.isci.2024.111600 [paper, repository]

"PyTDL": A versatile temporal difference learning algorithm to simulate behavior process of decision making and cognitive learning.

Journal: iScience

Authors' code: hus001/PyTDL (MIT)

Status: code verified, 11 files readable, 3 matches

[21994] doi:10.3390/ijms252413412 [paper, data]

Sex Differences in Depression: Insights from Multimodal Gray Matter Morphology and Peripheral Inflammatory Factors.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

Friday, 13 December 2024 (30 papers)

[21995] doi:10.1002/mrm.30403 [paper, repository]

T&lt;sub&gt;1&lt;/sub&gt; and T&lt;sub&gt;2&lt;/sub&gt; measurements of the neonatal brain at 7 T.

Journal: Magnetic resonance in medicine

Authors' code: mriphysics/7T-neonate-t1-t2-mapping (MIT)

Status: code verified, 19 files readable

[21996] doi:10.1016/j.jbc.2024.108073 [paper, data]

Distinct autoregulatory roles of ELFN1 intracellular and extracellular domains on membrane trafficking, synaptic localization, and dimerization.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[21997] doi:10.1073/pnas.2411898121 [paper, data]

The C-terminal activating domain promotes pannexin 1 channel opening.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 4 datasets cited

[21998] doi:10.1073/pnas.2415695121 [paper, repository]

Hierarchical gradients of multiple timescales in the mammalian forebrain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: AllenInstitute/MouseBrainHierarchy (BSD-2-Clause)

Status: code verified, 16 files readable

[21999] doi:10.1093/braincomms/fcae429 [paper, repository]

Musicality and social cognition in dementia: clinical and anatomical associations.

Journal: Brain communications

Authors' code: Jochumvanthooft/MELODIA_braincommunications (no license)

Status: code verified, 1 file readable

[22000] doi:10.1093/noajnl/vdae218 [paper, repository]

Sonic hedgehog medulloblastoma cells in co-culture with cerebellar organoids converge towards in vivo malignant cell states.

Journal: Neuro-oncology advances

Authors' code: jjacob12/scRNAseq_NOA (no license), Zenodo 14173205 (CC-BY-4.0)

Status: code verified, 30 files readable, 10 matches

[22001] doi:10.1126/sciadv.adf8405 [paper, data]

Nzf2 promotes oligodendrocyte differentiation and regeneration via repressing HDAC1-mediated histone deacetylation.

Journal: Science advances

Status: data only, 1 dataset cited

[22002] doi:10.1128/jvi.01824-24 [paper, data]

Transcriptomic analysis of coxsackievirus B3 infection in induced pluripotent stem cell-derived brain-like endothelial cells.

Journal: Journal of virology

Status: data only, 1 dataset cited

[22003] doi:10.1159/000543049 [paper, repository]

Deep Learning-Based Detection of Malignant Bile Duct Stenosis in Fluoroscopy Images of Endoscopic Retrograde Cholangiopancreatography.

Journal: Digestion

Authors' code: Kien283/ERCP (no license)

Status: code verified, 6 files readable, 1 match

[22004] doi:10.1162/imag_a_00388 [paper, repository]

DPABI harmonization: A toolbox for harmonizing multi-site brain imaging for big-data era.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: andy1764/covbat_harmonization (no license), rpomponio/neuroHarmonize (MIT), Chaogan-Yan/DPABI (LGPL-2.1)

Status: code verified, 973 files readable, 10 matches

[22005] doi:10.1371/journal.pcbi.1012262 [paper, repository]

A multi-scale study of thalamic state-dependent responsiveness.

Journal: PLoS computational biology

Authors' code: joverwiening/thalamic-mean-field (no license)

Status: code verified, 9 files readable, 1 match

[22006] doi:10.1371/journal.pcbi.1012567 [paper, repository]

Neural networks with optimized single-neuron adaptation uncover biologically plausible regularization.

Journal: PLoS computational biology

Authors' code: vgeadah/NonlinMod (no license)

Status: code verified, 24 files readable, 5 matches

[22007] doi:10.1371/journal.pcbi.1012673 [paper, repository]

Adapting to time: Why nature may have evolved a diverse set of neurons.

Journal: PLoS computational biology

Authors' code: biocomplab/Neuro-morphology (no license)

Status: code verified, 12 files readable, 6 matches

[22008] doi:10.1371/journal.pdig.0000678 [paper, repository]

Neonatal apnea and hypopnea prediction in infants with Robin sequence with neural additive models for time series.

Journal: PLOS digital health

Authors' code: mackelab/neonatal_apnea_prediction (MIT)

Status: code verified, 13 files readable, 11 matches

[22009] doi:10.1371/journal.pone.0299753 [paper, repository]

When most fMRI connectivity cannot be detected: Insights from time course reliability.

Journal: PloS one

Authors' code: hinata2305/TrueCon (no license), hinata2305/CleanBrain (no license)

Status: code verified, 47 files readable, 5 matches

[22010] doi:10.1371/journal.pone.0309366 [paper, data]

Longitudinal imaging of the taste bud in vivo with two-photon laser scanning microscopy.

Journal: PloS one

Status: data only, 3 datasets cited

[22011] doi:10.1371/journal.pone.0314979 [paper, data]

Evaluating the impact of boxing on prefrontal cortex activation and cognitive performance: A pilot study using fNIRS technology and the Stroop test.

Journal: PloS one

Status: data only, 1 dataset cited

[22012] doi:10.1590/1414-431x2024e13482 [paper, data]

Revealing induced pluripotent stem cells' potential as a better alternative to embryonic stem cells for Parkinson's disease treatment based on single-cell RNA-seq.

Journal: Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas

Status: data only, 1 dataset cited

[22013] doi:10.21203/rs.3.rs-5371568/v1 [paper, data]

MuSK is a substrate for CaMK2β but this interaction is dispensable for MuSK activation in vivo

Journal: Research Square (preprint)

Status: data only, 4 datasets cited

[22014] doi:10.25259/sni_190_2024 [paper]

Differences in tumor size, clinical, demographic, and socioeconomic profiles of central nervous system tumors among a racially diverse cohort: A retrospective case-control study.

Journal: Surgical neurology international

Status: code on request

[22015] doi:10.25259/sni_892_2024 [paper]

Comparison of dexmedetomidine versus fentanyl-based total intravenous anesthesia technique on the requirement of propofol, brain relaxation, intracranial pressure, neuronal injury, and hemodynamic parameters in patients with acute traumatic subdural hematoma undergoing emergency craniotomy: A randomized controlled trial.

Journal: Surgical neurology international

Status: code on request

[22016] doi:10.3390/biomedicines12122830 [paper, data]

ACTH-like Peptides Compensate Rat Brain Gene Expression Profile Disrupted by Ischemia a Day After Experimental Stroke.

Journal: Biomedicines

Status: data only, 1 dataset cited

[22017] doi:10.3390/cancers16244162 [paper, data]

DHODH Inhibition Suppresses <i>MYC</i> and Inhibits the Growth of Medulloblastoma in a Novel In Vivo Zebrafish Model.

Journal: Cancers

Status: data only, 1 dataset cited

[22018] doi:10.3390/ijms252413382 [paper, data]

Comprehensive Transcriptomic Analysis Reveals Cell-Type-Specific Roles of Human Odorant Receptors in Glioblastoma and the Tumor Microenvironment.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[22019] doi:10.3390/nu16244303 [paper, data]

Associations of Coffee and Tea Consumption on Neural Network Connectivity: Unveiling the Role of Genetic Factors in Alzheimer's Disease Risk.

Journal: Nutrients

Status: data only, 1 dataset cited

[22020] doi:10.3390/s24247961 [paper, repository]

Exploring the Utility of the Muse Headset for Capturing the N400: Dependability and Single-Trial Analysis.

Journal: Sensors (Basel, Switzerland)

Authors' code: OSF u6y9g (no license)

Status: code verified, 6 files readable, 3 matches

[22021] doi:10.7554/elife.86978 [paper, data]

Key epigenetic and signaling factors in the formation and maintenance of the blood-brain barrier.

Journal: eLife

Status: data only, 1 dataset cited

[22022] doi:10.7554/elife.98081 [paper, data]

A human forebrain organoid model reveals the essential function of GTF2IRD1-TTR-ERK axis for the neurodevelopmental deficits of Williams syndrome.

Journal: eLife

Status: data only, 1 dataset cited

[22023] doi:10.7717/peerj-cs.2590 [paper, repository]

Multimodal Alzheimer's disease classification through ensemble deep random vector functional link neural network.

Journal: PeerJ. Computer science

Authors' code: supp:PMC11784893/peerj-cs-10-2590-s001.zip (no license)

Status: code verified, 4 files readable, 6 matches

[22024] doi:10.7717/peerj.18490 [paper, repository]

A machine learning approach for identifying anatomical biomarkers of early mild cognitive impairment.

Journal: PeerJ

Authors' code: supp:PMC11648692/peerj-12-18490-s001.zip (no license)

Status: code verified, 22 files readable, 8 matches

Thursday, 12 December 2024 (39 papers)

[22025] doi:10.1002/advs.202410506 [paper, repository]

Mass-Guided Single-Cell MALDI Imaging of Low-Mass Metabolites Reveals Cellular Activation Markers.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: CeMOS-Mannheim/PRISM-MS (Apache-2.0)

Status: code verified, 8 files readable, 2 matches

[22026] doi:10.1002/ana.27157 [paper, repository]

Atlas of Cerebrospinal Fluid Immune Cells Across Neurological Diseases.

Journal: Annals of neurology

Authors' code: mihem/csf_immune_atlas (no license)

Status: code verified, 20 files readable, 9 matches

[22027] doi:10.1007/s00415-024-12792-5 [paper, data]

The volume of the subthalamic nucleus in spinocerebellar ataxia type 3: potential relevance for the clinical phenotype and treatment of parkinsonian symptoms with deep brain stimulation.

Journal: Journal of neurology

Status: data only, 1 dataset cited

[22028] doi:10.1007/s00415-024-12810-6 [paper]

Machine learning and deep learning algorithms in stroke medicine: a systematic review of hemorrhagic transformation prediction models.

Journal: Journal of neurology

Status: code on request

[22029] doi:10.1007/s11517-024-03241-6 [paper, repository]

An arbitrary waveform neurostimulator for preclinical studies: design and verification.

Journal: Medical & biological engineering & computing

Authors' code: supp:PMC11947015/11517_2024_3241_MOESM1_ESM.m (no license), supp:PMC11947015/11517_2024_3241_MOESM2_ESM.py (no license)

Status: code verified, 2 files readable, 3 matches

[22030] doi:10.1016/j.bbadva.2024.100130 [paper, data]

Valosin-containing protein (VCP), a component of tumor-derived extracellular vesicles, impairs the barrier integrity of brain microvascular endothelial cells.

Journal: BBA advances

Status: data only, 1 dataset cited

[22031] doi:10.1016/j.dcn.2024.101487 [paper, data]

Co-developing sleep-wake and sensory foundations for cognition in the human fetus and newborn.

Journal: Developmental cognitive neuroscience

Status: data only, 2 datasets cited

[22032] doi:10.1016/j.dcn.2024.101490 [paper, data]

How will developmental neuroimaging contribute to the prediction of neurodevelopmental or psychiatric disorders? Challenges and opportunities.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[22033] doi:10.1016/j.ebiom.2024.105501 [paper, repository]

Where, why, and how is bias learned in medical image analysis models? A study of bias encoding within convolutional networks using synthetic data.

Journal: EBioMedicine

Authors' code: estanley16/SimBA (GPL-3.0), estanley16/bias_encoding (MIT)

Status: code verified, 40 files readable, 6 matches

[22034] doi:10.1016/j.heliyon.2024.e41147 [paper, data]

Sleep stages classification based on feature extraction from music of brain.

Journal: Heliyon

Status: data only, 3 datasets cited

[22035] doi:10.1016/j.isci.2024.111577 [paper, data]

The BEN domain protein LIN-14 coordinates neuromuscular positioning during epidermal maturation.

Journal: iScience

Status: code on request, 1 dataset cited

[22036] doi:10.1016/j.isci.2024.111584 [paper, repository]

Microsaccade selectivity as discriminative feature for object decoding.

Journal: iScience

Authors' code: sa-nouri/ms-selectivity-feature (MIT)

Status: code verified, 23 files readable, 3 matches

[22037] doi:10.1016/j.isci.2024.111585 [paper, repository]

Heterogeneous and higher-order cortical connectivity undergirds efficient, robust, and reliable neural codes.

Journal: iScience

Authors' code: BlueBrain/reliability-and-structure (AGPL-3.0), BlueBrain/connectome-analysis (AGPL-3.0), BlueBrain/ConnectomeUtilities (Apache-2.0), BlueBrain/connectome-manipulator (Apache-2.0), bluebrain/topological_sampling (AGPL-3.0), BlueBrain/assemblyfire (Apache-2.0), Zenodo 10059227 (CC-BY-4.0)

Status: code verified, 428 files readable, 25 matches

[22038] doi:10.1016/j.isci.2024.111591 [paper, repository]

The role of conscious attention in auditory statistical learning: Evidence from patients with impaired consciousness.

Journal: iScience

Authors' code: OSF k5tsq (no license)

Status: code found, still to be checked

[22039] doi:10.1016/j.jpain.2024.104754 [paper, repository]

Genetics of constant and severe pain in the NAPS2 cohort of recurrent acute and chronic pancreatitis patients.

Journal: The journal of pain

Authors' code: hakyimlab/MetaXcan (MIT)

Status: code verified, 124 files readable

[22040] doi:10.1016/j.redox.2024.103469 [paper, data]

Macropinocytosis enhances foamy macrophage formation and cholesterol crystallization to activate NLRP3 inflammasome after spinal cord injury.

Journal: Redox biology

Status: data only, 1 dataset cited

[22041] doi:10.1016/j.xinn.2024.100735 [paper, data]

Principles of visual cortex excitatory microcircuit organization.

Journal: Innovation (Cambridge (Mass.))

Status: data only, 1 dataset cited

[22042] doi:10.1016/j.xpro.2024.103503 [paper, repository]

Protocol for state-based decoding of hand movement parameters using neural signals.

Journal: STAR protocols

Authors' code: AlavieMirfathollahi/S1-COT-Decoding (no license)

Status: code verified, 13 files readable, 19 matches

[22043] doi:10.1016/j.ymthe.2024.12.012 [paper]

Tailoring capsid-directed evolution technology for improved AAV-mediated CAR-T generation.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[22044] doi:10.1038/s41380-024-02869-y [paper, data]

Acute cannabidiol administration reduces alcohol craving and cue-induced nucleus accumbens activation in individuals with alcohol use disorder: the double-blind randomized controlled ICONIC trial.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[22045] doi:10.1038/s41467-024-53901-2 [paper, repository]

Membrane potential states gate synaptic consolidation in human neocortical tissue.

Journal: Nature communications

Authors' code: figshare 24793218 (CC-BY-4.0)

Status: code verified, 22 files readable, 10 matches

[22046] doi:10.1038/s41467-024-54022-6 [paper, repository]

How measurement noise limits the accuracy of brain-behaviour predictions.

Journal: Nature communications

Authors' code: Zenodo 13901196 (CC-BY-4.0), martingell/prediction_reliability (MIT)

Status: code verified, 82 files readable, 7 matches

[22047] doi:10.1038/s41592-024-02540-y [paper, repository]

MouseGoggles: an immersive virtual reality headset for mouse neuroscience and behavior.

Journal: Nature methods

Authors' code: adafruit/Adafruit-GFX-Library (BSD-2-Clause), juj/fbcp-ili9341 (MIT), Lauszus/ADNS3080 (no license), lolaBerkowitz/SNLab_ephys (GPL-3.0), petersenpeter/phy-plugins (GPL-3.0), dnafinder/cuzick (GPL-3.0)

Status: code verified, 1,553 files readable, 12 matches

[22048] doi:10.1038/s41598-024-76423-9 [paper, repository]

Neural dynamics of personality trait perception and interaction preferences.

Journal: Scientific reports

Authors' code: OSF g8scy (no license)

Status: code verified, 6 files readable, 2 matches

[22049] doi:10.1038/s42003-024-07294-z [paper]

Neurobeachin regulates receptor downscaling at GABAergic inhibitory synapses in a protein kinase A-dependent manner.

Journal: Communications biology

Status: code on request

[22050] doi:10.1038/s44318-024-00325-9 [paper, data]

Cyclin-dependent kinase inhibitor p18 regulates lineage transitions of excitatory neurons, astrocytes, and interneurons in the mouse cortex.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[22051] doi:10.1049/htl2.12113 [paper, data]

Neural fields for 3D tracking of anatomy and surgical instruments in monocular laparoscopic video clips.

Journal: Healthcare technology letters

Status: data only, 1 dataset cited

[22052] doi:10.1111/cdev.14208 [paper]

Examining the effectiveness of a video-based parent-child program on executive functions for children  5 to 6 years old: A randomized controlled trial.

Journal: Child development

Status: code on request

[22053] doi:10.1242/dev.204329 [paper, repository]

Phospho-regulation of ASCL1-mediated chromatin opening during cellular reprogramming.

Journal: Development (Cambridge, England)

Authors' code: Zenodo 14218475 (CC-BY-4.0), slgillen/ascl1_phosphoregulation_analysis (CC-BY-4.0)

Status: code verified, 16 files readable, 3 matches

[22054] doi:10.1371/journal.pcbi.1011830 [paper, repository]

Uncovering population contributions to the extracellular potential in the mouse visual system using Laminar Population Analysis.

Journal: PLoS computational biology

Authors' code: atleer/Laminar-Population-Analysis (no license)

Status: code verified, 22 files readable, 3 matches

[22055] doi:10.1371/journal.pcbi.1012407 [paper, repository]

Quantitative and Kinetic Proteomics Reveal ApoE Isoform-dependent Proteostasis Adaptations in Mouse Brain.

Journal: PLoS computational biology

Authors' code: JC-Price/PublicProteomeDataAnalysis (GPL-3.0), jc-price/deuterater (no license), natepine/ApoE_Proteomics (no license)

Status: code verified, 43 files readable, 10 matches

[22056] doi:10.3389/fmed.2024.1520878 [paper, data]

Early detection of Alzheimer's disease in structural and functional MRI.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[22057] doi:10.3389/fnins.2024.1502246 [paper, repository]

The cellular and extracellular proteomic signature of human dopaminergic neurons carrying the LRRK2 G2019S mutation.

Journal: Frontiers in neuroscience

Authors' code: bigomics/omicsplayground (CC-BY-NC-ND-4.0)

Status: code verified, 472 files readable, 1 match

[22058] doi:10.3390/bioengineering11121258 [paper, data]

Cost-Reference Particle Filter-Based Method for Constructing Effective Brain Networks: Application in Optically Pumped Magnetometer Magnetoencephalography.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[22059] doi:10.3390/genes15121594 [paper, repository]

Retinal Dystrophy Associated with Homozygous Variants in <i>NRL</i>.

Journal: Genes

Authors' code: jordimaggi/WGS_analysis_workflow (MIT)

Status: code verified, 14 files readable, 2 matches

[22060] doi:10.3390/jimaging10120319 [paper, data]

Improved Generalizability in Medical Computer Vision: Hyperbolic Deep Learning in Multi-Modality Neuroimaging.

Journal: Journal of imaging

Status: data only, 2 datasets cited

[22061] doi:10.7554/elife.92091 [paper, repository]

A multiplexed, single-cell sequencing screen identifies compounds that increase neurogenic reprogramming of murine Muller glia.

Journal: eLife

Authors' code: bbi-lab/bbi-dmux (other), atresen/sci-plex_glia (MIT)

Status: code verified, 34 files readable, 15 matches

[22062] doi:10.7717/peerj-cs.2437 [paper, data]

Synthetic data analysis for early detection of Alzheimer progression through machine learning algorithms.

Journal: PeerJ. Computer science

Status: data only, 1 dataset cited

[22063] doi:10.7717/peerj.18629 [paper, repository]

The largest sauropodomorph skull from the Lower Jurassic Lufeng Formation of China.

Journal: PeerJ

Authors' code: supp:PMC11646418/peerj-12-18629-s003.r (no license)

Status: code verified, 1 file readable, 1 match

Wednesday, 11 December 2024 (23 papers)

[22064] doi:10.1016/j.celrep.2024.115008 [paper]

The nucleoporin Nup153 is the anchor for Kif1a during basal nuclear migration in brain progenitor cells.

Journal: Cell reports

Status: code on request

[22065] doi:10.1016/j.mex.2024.103106 [paper, repository]

A novel computational method for rodent electrographic recording and analysis using off-the-shelf intracerebral depth electrodes.

Journal: MethodsX

Authors' code: kg244/SpikeDetector (MIT)

Status: code verified, 2 files readable

[22066] doi:10.1016/j.ymthe.2024.12.006 [paper]

Modified human mesenchymal stromal/stem cells restore cortical excitability after focal ischemic stroke in rats.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[22067] doi:10.1038/s41531-024-00842-8 [paper, data]

Mitochondrial oxidant stress promotes α-synuclein aggregation and spreading in mice with mutated glucocerebrosidase.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[22068] doi:10.1093/braincomms/fcae449 [paper, data]

Verbal working memory and syntactic comprehension segregate into the dorsal and ventral streams, respectively.

Journal: Brain communications

Status: data only, 1 dataset cited

[22069] doi:10.1098/rsif.2024.0414 [paper, repository]

Dynamics of positional information in the vertebrate neural tube.

Journal: Journal of the Royal Society, Interface

Authors' code: doi:10.6084/m9.figshare.c.7533478 (no license)

Status: code found, still to be checked

[22070] doi:10.1101/2024.12.11.627908 [paper, repository]

Frequency-specific theta states in the hippocampus are linked to reconfiguration of population activity with respect to behavioural context

Journal: bioRxiv (preprint)

Authors' code: vidaurre/glhmm (GPL-3.0), vidaurre/genephys (GPL-3.0), LauraMasaracchia/state-conditioned_decoding (no license)

Status: code verified, 66 files readable, 16 matches

[22071] doi:10.1126/sciadv.adp1980 [paper, repository]

Synergistic label-free fluorescence imaging and miRNA studies reveal dynamic human neuron-glial metabolic interactions following injury.

Journal: Science advances

Authors' code: doi:10.5061/dryad.b5mkkwhp5 (no license), Zenodo 13738574 (MIT)

Status: code verified, 20 files readable, 7 matches

[22072] doi:10.1126/sciadv.adq6017 [paper, data]

Transcriptomic landscape of mammalian ventral pallidum at single-cell resolution.

Journal: Science advances

Status: data only, 4 datasets cited

[22073] doi:10.1162/imag_a_00383 [paper, repository]

Neurofeedback-induced desynchronization of sensorimotor rhythm elicits pre-movement downregulation of intracortical inhibition that shortens simple reaction time in humans: A double-blind, sham-controlled randomized study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Junichi-Ushiba-Laboratory/neurofeedback-induced-desynchronization-of-sensorimotor-rhythm (no license)

Status: code verified, 10 files readable

[22074] doi:10.1162/imag_a_00385 [paper, data]

Action observation reveals a network with divergent temporal and parietal cortex engagement in dogs compared with humans.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 3 datasets cited

[22075] doi:10.1162/imag_a_00387 [paper, repository]

Variability of multidimensional diffusion-relaxation MRI estimates in the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: markus-nilsson/md-dmri (other)

Status: code verified, 706 files readable, 4 matches

[22076] doi:10.1186/s12864-024-11118-z [paper, repository]

Alternative splicing induces sample-level variation in gene-gene correlations.

Journal: BMC genomics

Authors' code: ylustat/AlternativeSplicing (no license)

Status: dead link

[22077] doi:10.1523/jneurosci.0532-24.2024 [paper, repository]

Alpha Traveling Waves during Working Memory: Disentangling Bottom-Up Gating and Top-Down Gain Control.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 8tcw2 (no license)

Status: code verified, 1 file readable, 2 matches

[22078] doi:10.17305/bb.2024.10822 [paper]

Nogo-A exacerbates sepsis-associated encephalopathy by modulating microglial SHP-2/NLRP3 balance and inducing ROS and M1 polarization.

Journal: Biomolecules & biomedicine

Status: data only

[22079] doi:10.3389/fdata.2024.1429910 [paper, repository]

Application of a localized morphometrics approach to imaging-derived brain phenotypes for genotype-phenotype associations in pediatric mental health and neurodevelopmental disorders.

Journal: Frontiers in big data

Authors' code: wilmsm/localizedssm (Apache-2.0)

Status: code verified, 7 files readable

[22080] doi:10.3389/fnhum.2024.1515514 [paper, repository]

Altered neural recruitment during single and dual tasks in athletes with repeat concussion.

Journal: Frontiers in human neuroscience

Authors' code: andyhagen11/Altered-neural-recruitment-during-single-and-dual-tasks-in-athletes-with-repeat-concussion (MIT)

Status: code verified, 4 files readable, 4 matches

[22081] doi:10.3389/fnins.2024.1402657 [paper, repository]

A fusion analytic framework for investigating functional brain connectivity differences using resting-state fMRI.

Journal: Frontiers in neuroscience

Authors' code: jeon9677/summary-fcn (no license)

Status: code verified, 6 files readable, 4 matches

[22082] doi:10.3389/fpsyg.2024.1421688 [paper, data]

The use of the differential outcomes procedure for the recognition of facial expressions of complex emotions and its electrophysiological correlates.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[22083] doi:10.3390/brainsci14121241 [paper]

Assessing the Relationship of Brain Metabolites to Cortical Thickness and Dementia Symptoms in Adults with Down Syndrome: A Pilot Study.

Journal: Brain sciences

Status: code on request

[22084] doi:10.3390/s24247919 [paper, data]

Unlocking Security for Comprehensive Electroencephalogram-Based User Authentication Systems.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[22085] doi:10.7554/elife.101439 [paper, data]

Pharyngeal neuronal mechanisms governing sour taste perception in <i>Drosophila melanogaster</i>.

Journal: eLife

Status: data only, 1 dataset cited

[22086] doi:10.7554/elife.96140 [paper, data]

Associative plasticity of granule cell inputs to cerebellar Purkinje cells.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 10 December 2024 (40 papers)

[22087] doi:10.1002/ana.27154 [paper, repository]

Automated Neuroprognostication Via Machine Learning in Neonates with Hypoxic-Ischemic Encephalopathy.

Journal: Annals of neurology

Authors' code: gin.g-node.org/johndlewis/hie (CC0-1.0)

Status: code verified, 6 files readable, 4 matches

[22088] doi:10.1016/j.fmre.2024.12.001 [paper, data]

Terahertz wave targeting modulates the dedocking of neurotransmitters with receptors.

Journal: Fundamental research

Status: data only, 1 dataset cited

[22089] doi:10.1016/j.heliyon.2024.e41120 [paper, repository]

Prob-sparse self-attention extraction of time-aligned dynamic functional connectivity for ASD diagnosis.

Journal: Heliyon

Authors' code: fan2077/PSA-FCN-InformerDFC (no license)

Status: code verified, 17 files readable, 1 match

[22090] doi:10.1016/j.isci.2024.111566 [paper]

An antisense-long-noncoding-RNA modulates p75^NTR expression levels during neuronal polarization.

Journal: iScience

Status: code on request

[22091] doi:10.1016/j.nicl.2024.103723 [paper, repository]

Mechanisms underlying the spontaneous reorganization of depression network after stroke.

Journal: NeuroImage. Clinical

Authors' code: fyr12345/depression_network (no license)

Status: code verified, 7 files readable, 2 matches

[22092] doi:10.1016/j.xhgg.2024.100392 [paper, repository]

Large-scale brainstem neuroimaging and genetic analyses provide new insights into the neuronal mechanisms of hypertension.

Journal: HGG advances

Authors' code: precimed/ukb (no license), OSF fnxyg (no license)

Status: code verified, 18 files readable, 8 matches

[22093] doi:10.1038/s41467-024-54928-1 [paper, data]

Parallel labeled-line organization of sympathetic outflow for selective organ regulation in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[22094] doi:10.1038/s43588-024-00735-z [paper, repository]

A simulated annealing algorithm for randomizing weighted networks.

Journal: Nature computational science

Authors' code: joblib.readthedocs.io (no license), netneurolab/milisav_strength_nulls (BSD-3-Clause), Zenodo 13989095 (CC-BY-4.0), fmilisav/milisav_strength_nulls (BSD-3-Clause)

Status: code verified, 82 files readable, 14 matches

[22095] doi:10.1073/pnas.2314011121 [paper, repository]

Distinct modulation of calcium-activated chloride channel TMEM16A by drug-binding sites.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doctroh/TMEM16A-unbiased-molecular-docking-and-clustering (no license)

Status: code verified, 3 files readable

[22096] doi:10.1093/pnasnexus/pgae519 [paper, repository]

Choosing explanation over performance: Insights from machine learning-based prediction of human intelligence from brain connectivity.

Journal: PNAS nexus

Authors' code: faskowit/app-fmri-2-mat (MIT), jonasAthiele/predicting_human_cognition (no license), Zenodo 10178395 (CC-BY-4.0)

Status: code verified, 94 files readable, 15 matches

[22097] doi:10.1159/000542574 [paper, data]

The Endocranial Cast of Khirtharia (Artiodactyla, Raoellidae) Provides New Insights into the Earliest Evolution of the Cetacean Brain.

Journal: Brain, behavior and evolution

Status: data only, 1 dataset cited

[22098] doi:10.1159/000542793 [paper, data]

Urinary Lactate-To-Creatinine Ratio during the First Days of Life Correlates with the Degree of Brain Damage in Premature Infants.

Journal: Neonatology

Status: data only, 1 dataset cited

[22099] doi:10.1162/netn_a_00382 [paper, repository]

Comparison of different group-level templates in gradient-based multimodal connectivity analysis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: camin-neuro/caminopen (no license), MICA-MNI/BrainStat (BSD-3-Clause)

Status: code verified, 280 files readable, 12 matches

[22100] doi:10.1162/netn_a_00388 [paper, repository]

Transcranial ultrasound stimulation effect in the redundant and synergistic networks consistent across macaques.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: brain-connectivity-toolbox.net (no license)

Status: code verified

[22101] doi:10.1162/netn_a_00389 [paper, repository]

Brain signaling becomes less integrated and more segregated with age.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: lcneuro/2state_brain (no license)

Status: dead link

[22102] doi:10.1162/netn_a_00392 [paper, data]

Hemodynamic cortical ripples through cyclicity analysis.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 4 datasets cited

[22103] doi:10.1162/netn_a_00394 [paper, repository]

The impact of Parkinson's disease on striatal network connectivity and corticostriatal drive: An in silico study.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: a1eko/treem (MIT), giotto-ai/pyflagser (AGPL-3.0), Zenodo 8265703 (MIT)

Status: code verified, 128 files readable, 3 matches

[22104] doi:10.1162/netn_a_00395 [paper, repository]

Increasing hub disruption parallels dementia severity in autosomal dominant Alzheimer's disease.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: mwheelock/Network-Level-Analysis (GPL-3.0), WheelockLab/Tu-2024-DIAN-HubDisruption-FC (MIT)

Status: code verified, 72 files readable, 3 matches

[22105] doi:10.1162/netn_a_00397 [paper, repository]

A generative model of the connectome with dynamic axon growth.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: yuanzhel94/connectome_from_pathfinding (no license)

Status: code verified, 191 files readable, 7 matches

[22106] doi:10.1162/netn_a_00399 [paper, repository]

Discovering prominent differences in structural and functional connectomes using a multinomial stochastic block model.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Ninaiskov/ConnDiff-MultSBM (no license)

Status: code verified, 8 files readable, 4 matches

[22107] doi:10.1162/netn_a_00400 [paper, repository]

Predicting an individual's functional connectivity from their structural connectome: Evaluation of evidence, recommendations, and future prospects.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: sarwart/mapping_SC_FC (no license)

Status: code verified, 4 files readable, 1 match

[22108] doi:10.1162/netn_a_00402 [paper, repository]

The impact of functional correlations on task information coding.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: ito-takuya/signalNoiseFC (no license)

Status: code verified, 40 files readable, 6 matches

[22109] doi:10.1162/netn_a_00403 [paper, repository]

Deconstructing the Mapper algorithm to extract richer topological and temporal features from functional neuroimaging data.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: braindynamicslab/demapper (Apache-2.0)

Status: code verified, 566 files readable, 11 matches

[22110] doi:10.1162/netn_a_00404 [paper, repository]

Conservation of structural brain connectivity in people with multiple sclerosis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: GerardMJuan/FC-SC-data-pipeline (MIT), Jfortin1/neuroCombat (MIT), GerardMJuan/GraphNetworkMarkers (MIT)

Status: code verified, 53 files readable, 5 matches

[22111] doi:10.1162/netn_a_00407 [paper, data]

A gradient of hemisphere-specific dorsal to ventral processing routes in parieto-premotor networks.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[22112] doi:10.1162/netn_a_00409 [paper, repository]

CoCoNest: A continuous structural connectivity-based nested family of parcellations of the human cerebral cortex.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: sbci-brain/CoCoNest (no license), sbci-brain (no license)

Status: code verified, 18 files readable, 2 matches

[22113] doi:10.1162/netn_a_00410 [paper, repository]

Neural mass modeling for the masses: Democratizing access to whole-brain biophysical modeling with FastDMF.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: concog/fastdmf (BSD-3-Clause)

Status: code verified, 285 files readable, 4 matches

[22114] doi:10.1162/netn_a_00412 [paper, repository]

Generative dynamical models for classification of rsfMRI data.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: lindermanlab/ssm (MIT), ghuckins/HMMMyConnectome (no license)

Status: code verified, 162 files readable, 5 matches

[22115] doi:10.1162/netn_a_00414 [paper, repository]

Patterns of the left thalamus embedding into the connectome associated with reading skills in children with reading disabilities.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: chenglinlou/reading_wm_connectome_thalamus (no license)

Status: code verified, 17 files readable

[22116] doi:10.1162/netn_a_00416 [paper, data]

Gamma frequency connectivity in frontostriatal networks associated with social preference is reduced with traumatic brain injury.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[22117] doi:10.1172/jci.insight.181783 [paper]

Noise induces Ca2+ signaling waves and Chop/S-Xbp1 expression in the hearing cochlea.

Journal: JCI insight

Status: code on request

[22118] doi:10.1242/jcs.263407 [paper, repository]

'Iterative Bleaching Extends Multiplexity' facilitates simultaneous identification of all major retinal cell types.

Journal: Journal of cell science

Authors' code: niaid/sitk-ibex (Apache-2.0)

Status: code verified, 18 files readable

[22119] doi:10.3352/jeehp.2024.21.38 [paper, data]

Feasibility of utilizing functional near-infrared spectroscopy to measure the cognitive load of paramedicine students undertaking high-acuity clinical simulations in Australia: a case study.

Journal: Journal of educational evaluation for health professions

Status: data only, 1 dataset cited

[22120] doi:10.3389/fnbot.2024.1485640 [paper, data]

3D convolutional neural network based on spatial-spectral feature pictures learning for decoding motor imagery EEG signal.

Journal: Frontiers in neurorobotics

Status: data only, 1 dataset cited

[22121] doi:10.3390/jcm13247507 [paper, repository]

Single-Cell Transcriptomics Sheds Light on Tumor Evolution: Perspectives from City of Hope's Clinical Trial Teams.

Journal: Journal of clinical medicine

Authors' code: U54Bioinformatics (no license), aritronath/ENDORSE (no license)

Status: code verified, 14 files readable

[22122] doi:10.3390/microorganisms12122542 [paper, data]

The Gut Microbiota Is Involved in the Regulation of Cognitive Flexibility in Adolescent BALB/c Mice Exposed to Chronic Physical Stress and a High-Fat Diet.

Journal: Microorganisms

Status: data only, 1 dataset cited

[22123] doi:10.3390/s24247881 [paper, data]

Model-Based Electroencephalogram Instantaneous Frequency Tracking: Application in Automated Sleep-Wake Stage Classification.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[22124] doi:10.3758/s13428-024-02545-7 [paper, repository]

Cross-species real-time detection of trends in pupil size fluctuation.

Journal: Behavior research methods

Authors' code: nimh-sfim/rtPupilPhase (CC0-1.0)

Status: code verified, 23 files readable, 16 matches

[22125] doi:10.7554/elife.96997 [paper, repository]

Value construction through sequential sampling explains serial dependencies in decision making.

Journal: eLife

Authors' code: arielzylberberg/Reval_eLife_2024 (no license)

Status: code verified, 367 files readable, 3 matches

[22126] doi:10.7554/elife.97356 [paper, data]

Molecular, cellular, and developmental organization of the mouse vomeronasal organ at single cell resolution.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 9 December 2024 (25 papers)

[22127] doi:10.1016/j.celrep.2024.115046 [paper, repository]

Spinal microcircuits go through multiphasic homeostatic compensations in a mouse model of motoneuron degeneration.

Journal: Cell reports

Authors' code: Bhumbra/Pyclamp (BSD-3-Clause)

Status: code verified, 66 files readable, 2 matches

[22128] doi:10.1016/j.isci.2024.111548 [paper, repository]

Neonatal infection with <i>Bordetella pertussis</i> promotes autism-like phenotypes in mice.

Journal: iScience

Authors' code: doi:10.5061/dryad.vq83bk43q (no license)

Status: code verified

[22129] doi:10.1016/j.isci.2024.111549 [paper, repository]

Zebrafish glial-vascular interactions progressively expand over the course of brain development.

Journal: iScience

Authors' code: O-Brown-lab/2024GliaContacts (MIT)

Status: code verified, 3 files readable

[22130] doi:10.1016/j.isci.2024.111562 [paper, data]

Ablation of PI3Kγ in neurons protects mice from diet-induced obesity MASLD and insulin resistance.

Journal: iScience

Status: code on request, 1 dataset cited

[22131] doi:10.1016/j.nsa.2024.105407 [paper, repository]

Towards collaborative data science in mental health research: The ECNP neuroimaging network accessible data repository.

Journal: Neuroscience applied

Authors' code: adyasha95/ECNP-NNADRrepo (no license)

Status: code verified, 22 files readable, 5 matches

[22132] doi:10.1038/s41467-024-54273-3 [paper, repository]

Multi-regional control of amygdalar dynamics reliably reflects fear memory age.

Journal: Nature communications

Authors' code: torcheeg/torcheeg (MIT), BrainOdyssey2050/Makino-Wang-et-al-2024-Nat-Commun_Source-Code (MIT), Zenodo 13934383 (CC-BY-4.0)

Status: code verified, 2,012 files readable, 30 matches

[22133] doi:10.1038/s41592-024-02555-5 [paper, repository]

Multiplexing cortical brain organoids for the longitudinal dissection of developmental traits at single-cell resolution.

Journal: Nature methods

Authors' code: GiuseppeTestaLab/SCanSNP (GPL-3.0), GiuseppeTestaLab/organoidMultiplexing_release (LGPL-3.0)

Status: code verified, 35 files readable, 9 matches

[22134] doi:10.1038/s41593-024-01830-0 [paper, repository]

Thermally induced neuronal plasticity in the hypothalamus mediates heat tolerance.

Journal: Nature neuroscience

Authors' code: wambroziak/Abfun (CC-BY-NC-SA-4.0), AcunaLabUHD/AcunaLab_Miniscope_Siemens (no license)

Status: code verified, 7 files readable

[22135] doi:10.1038/s44321-024-00168-1 [paper, data]

A novel anti-epileptogenesis strategy of temporal lobe epilepsy based on nitric oxide donor.

Journal: EMBO molecular medicine

Status: data only, 2 datasets cited

[22136] doi:10.1073/pnas.2408871121 [paper, data]

Intracortical recordings reveal the neuronal selectivity for bodies and body parts in the human visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22137] doi:10.1073/pnas.2410750121 [paper, repository]

AI-boosted and motion-corrected, wireless near-infrared sensing system for continuously monitoring laryngeal muscles.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 13835256 (CC-BY-4.0), bailabunc/lahmo (no license)

Status: code verified, 64 files readable, 9 matches

[22138] doi:10.1093/nsr/nwae441 [paper, repository]

One-core neuron deep learning for time series prediction.

Journal: National science review

Authors' code: Peng154/OCN (Apache-2.0)

Status: code verified, 13 files readable

[22139] doi:10.1111/ejn.16634 [paper, data]

Visual information processing of 2D, virtual 3D and real-world objects marked by theta band responses: Visuospatial processing and cognitive load as a function of modality.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[22140] doi:10.1159/000542994 [paper, data]

Long-Term Multimodal Exercise Intervention for Patients with Frontotemporal Lobar Degeneration: Feasibility and Preliminary Outcomes.

Journal: Dementia and geriatric cognitive disorders extra

Status: data only, 1 dataset cited

[22141] doi:10.1162/imag_a_00381 [paper, repository]

Spectral graph model for fMRI: A biophysical, connectivity-based generative model for the analysis of frequency-resolved resting-state fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Raj-Lab-UCSF/SGMforFMRI (no license)

Status: code verified, 5 files readable, 2 matches

[22142] doi:10.1523/eneuro.0260-24.2024 [paper, data]

Tau Accumulation Induces Microglial State Alterations in Alzheimer's Disease Model Mice.

Journal: eNeuro

Status: data only, 1 dataset cited

[22143] doi:10.1523/eneuro.0262-24.2024 [paper, repository]

Dissociable Effects of Urgency and Evidence Accumulation during Reaching Revealed by Dynamic Multisensory Integration.

Journal: eNeuro

Authors' code: annehoff/MultisensFBReaching (GPL-3.0)

Status: code verified, 5 files readable, 8 matches

[22144] doi:10.1556/2006.2024.00068 [paper, repository]

The longitudinal association between reward processing and symptoms of video game addiction in the Adolescent Brain Cognitive Development Study.

Journal: Journal of behavioral addictions

Authors' code: Daniel-Adan-Lopez/ABCD_Gaming (no license)

Status: empty repository, 1 file readable

[22145] doi:10.3389/fendo.2024.1443880 [paper]

Neuron stress-related genes serve as new biomarkers in hypothalamic tissue following high fat diet.

Journal: Frontiers in endocrinology

Status: data only

[22146] doi:10.3389/fnins.2024.1445020 [paper, repository]

Imaging distinct neuronal populations with a dual channel miniscope.

Journal: Frontiers in neuroscience

Authors' code: liang-bo/AutoStereota (MIT)

Status: code verified, 16 files readable, 1 match

[22147] doi:10.3390/ijms252313216 [paper, data]

Functional Analysis of TAAR1 Expression in the Intestine Wall and the Effect of Its Gene Knockout on the Gut Microbiota in Mice.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[22148] doi:10.3390/tomography10120144 [paper, data]

Neural Modulation Alteration to Positive and Negative Emotions in Depressed Patients: Insights from fMRI Using Positive/Negative Emotion Atlas.

Journal: Tomography (Ann Arbor, Mich.)

Status: data only, 1 dataset cited

[22149] doi:10.7554/elife.80979 [paper, repository]

<i>Efficient value synthesis</i> in the orbitofrontal cortex explains how loss aversion adapts to the ranges of gain and loss prospects.

Journal: eLife

Authors' code: MBB-team/VBA-toolbox (GPL-3.0)

Status: code verified, 576 files readable, 4 matches

[22150] doi:10.7554/elife.96020 [paper, repository]

Cross-species alignment along the chronological axis reveals evolutionary effect on structural development of the human brain.

Journal: eLife

Authors' code: kustlpbr/jiaojianwang-lab (no license)

Status: code verified, 47 files readable, 2 matches

[22151] doi:10.7554/elife.97085 [paper, repository]

The identification of extensive samples of motor units in human muscles reveals diverse effects of neuromodulatory inputs on the rate coding.

Journal: eLife

Authors' code: simonavrillon/MUdictionnary (no license)

Status: code verified, 7 files readable, 2 matches

Sunday, 8 December 2024 (1 paper)

[22152] doi:10.1111/jne.13476 [paper, repository]

From silence to song: Testosterone triggers extensive transcriptional changes in the female canary HVC.

Journal: Journal of neuroendocrinology

Authors' code: Zenodo 1489098 (CC-BY-NC-4.0), maggieMCKO/TimeLapseTestoFemaleCanary (MIT)

Status: code verified, 5 files readable, 6 matches

Friday, 6 December 2024 (22 papers)

[22153] doi:10.1002/alz.14388 [paper, repository]

Childhood adversity and late-life cognitive and brain health in a diverse cohort.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ehayeslarson/KSchildhoodadversity (no license)

Status: code verified, 9 files readable, 9 matches

[22154] doi:10.1002/mrm.30387 [paper, repository]

Dynamic B&lt;sub&gt;0&lt;/sub&gt; field shimming for improving pseudo-continuous arterial spin labeling at 7 T.

Journal: Magnetic resonance in medicine

Authors' code: physimals/oxasl (Apache-2.0), tomokell/bloch_sim (other), yangji6/Dynamic-B0-Shimming-for-ASL (no license), Zenodo 7952965 (other-open)

Status: code verified, 162 files readable, 7 matches

[22155] doi:10.1007/s11538-024-01379-w [paper, repository]

[PSI]-CIC: A Deep-Learning Pipeline for the Annotation of Sectored Saccharomyces cerevisiae Colonies.

Journal: Bulletin of mathematical biology

Authors' code: jcollignon/psi-sectored-classification (MIT)

Status: code verified, 25 files readable, 12 matches

[22156] doi:10.1016/j.bpsgos.2024.100431 [paper, repository]

Circulating Stress Hormones, Brain Health, and Cognition in Healthy Older Adults: Cross-Sectional Findings and Sex Differences in Age-Well.

Journal: Biological psychiatry global open science

Authors' code: OSF 4vp8g (no license)

Status: code verified, 38 files readable, 1 match

[22157] doi:10.1016/j.dib.2024.111197 [paper, data]

Dataset on the quality of life and neurocognitive effects of prophylactic cranial irradiation, with and without hippocampal avoidance, in small-cell lung cancer patients.

Journal: Data in brief

Status: data only, 2 datasets cited

[22158] doi:10.1016/j.heliyon.2024.e41045 [paper, data]

Enhancing diabetic rat peripheral nerve conduction velocity parameters through the potent effects of MitoTEMPO.

Journal: Heliyon

Status: data only, 1 dataset cited

[22159] doi:10.1016/j.lanwpc.2024.101256 [paper, repository]

PM_2.5 and hospitalizations through the emergency department in people with disabilities: a nationwide case-crossover study in South Korea.

Journal: The Lancet regional health. Western Pacific

Authors' code: pjapja0823/dsb_pm (no license)

Status: empty repository, 1 file readable

[22160] doi:10.1016/j.omton.2024.200916 [paper]

SAP30, a novel autophagy regulatory gene in neuroblastoma.

Journal: Molecular therapy. Oncology

Status: code on request

[22161] doi:10.1038/s41551-024-01299-z [paper, repository]

Evoking stable and precise tactile sensations via multi-electrode intracortical microstimulation of the somatosensory cortex.

Journal: Nature biomedical engineering

Authors' code: dabi.loni.usc.edu/dsi/gu5a5io8lrxe (no license), CorticalBionics/StableAndPreciseICMS (MIT)

Status: code verified, 43 files readable, 2 matches

[22162] doi:10.1038/s41746-024-01325-z [paper, repository]

Deep learning biomarker of chronometric and biological ischemic stroke lesion age from unenhanced CT.

Journal: NPJ digital medicine

Authors' code: mvallieres/radiomics (GPL-3.0)

Status: code verified, 361 files readable, 7 matches

[22163] doi:10.1073/pnas.2412881121 [paper, data]

Distinguishing deception from its confounds by improving the validity of fMRI-based neural prediction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22164] doi:10.1098/rsfs.2024.0024 [paper, repository]

Robust data-driven segmentation of pulsatile cerebral vessels using functional magnetic resonance imaging.

Journal: Interface focus

Authors' code: Zenodo 13983648 (CC-BY-4.0), doi:10.6084/m9.figshare.c.7555190 (no license)

Status: code verified, 10 files readable, 5 matches

[22165] doi:10.1098/rsfs.2024.0026 [paper, repository]

Model-driven exploration of poro-viscoelasticity in human brain tissue: be careful with the parameters!

Journal: Interface focus

Authors' code: Zenodo 13960486 (CC-BY-4.0)

Status: code verified, 1 file readable, 5 matches

[22166] doi:10.1101/2024.12.03.626542 [paper, repository]

Inter-subject correlations and their behavioral associations vary across movies: Implications for generalizability

Journal: bioRxiv (preprint)

Authors' code: simonleipold/movie_variability (MIT), Zenodo 13348505 (MIT)

Status: code verified, 264 files readable, 8 matches

[22167] doi:10.1162/imag_a_00390 [paper, repository]

Approximation of bone mineral density and subcutaneous adiposity using T1-weighted images of the human head.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: robdahn/boney (AGPL-3.0)

Status: code verified, 44 files readable, 16 matches

[22168] doi:10.1186/s10020-024-00995-5 [paper, data]

Triolein alleviates ischemic stroke brain injury by regulating autophagy and inflammation through the AKT/mTOR signaling pathway.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 6 datasets cited

[22169] doi:10.1186/s11689-024-09585-2 [paper, data]

Attenuated processing of vowels in the left temporal cortex predicts speech-in-noise perception deficit in children with autism.

Journal: Journal of neurodevelopmental disorders

Status: data only, 1 dataset cited

[22170] doi:10.1242/dmm.052011 [paper, data]

Stat3 mediates Fyn kinase-driven dopaminergic neurodegeneration and microglia activation.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[22171] doi:10.1371/journal.pone.0313854 [paper, repository]

Hearing and cognitive decline in aging differentially impact neural tracking of context-supported versus random speech across linguistic timescales.

Journal: PloS one

Authors' code: OSF 5usgp (no license), elbolt/neuroscales (MIT)

Status: code verified, 25 files readable, 15 matches

[22172] doi:10.3389/fcell.2024.1488877 [paper, data]

Impact of galectin-3 on neurotrophic factor expression by PCR array: potential implications for the human cornea.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[22173] doi:10.3389/fncom.2024.1483100 [paper, repository]

A framework for optimal control of oscillations and synchrony applied to non-linear models of neural population dynamics.

Journal: Frontiers in computational neuroscience

Authors' code: lenasal/neurolib (MIT)

Status: code verified, 148 files readable, 7 matches

[22174] doi:10.7554/elife.88319 [paper, data]

The cation channel mechanisms of subthreshold inward depolarizing currents in the mice VTA dopaminergic neurons and their roles in the chronic-stress-induced depression-like behavior.

Journal: eLife

Status: data only, 2 datasets cited

Thursday, 5 December 2024 (44 papers, 2 on this page)

[22175] doi:10.1002/aur.3281 [paper, repository]

Cognitive flexibility in autism: How task predictability and sex influence performances.

Journal: Autism research : official journal of the International Society for Autism Research

Authors' code: OSF etkfd (no license)

Status: code verified, 2 files readable, 10 matches

[22176] doi:10.1016/j.celrep.2024.115012 [paper, repository]

Slow and fast cortical cholinergic arousal is reduced in a mouse model of focal seizures with impaired consciousness.

Journal: Cell reports

Authors' code: Zenodo 13991910 (CC-BY-4.0), blumenfeldlab/sieu-et-al_2024 (no license)

Status: code verified, 106 files readable, 6 matches

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