Every paper, by date: page 101

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 101 of 200: 1 December 2024 to 22 November 2024.

Sunday, 1 December 2024 (74 papers, 4 on this page)

[22401] doi:10.1242/dev.204986 [paper, repository]

SOX2-driven enhancer landscape defines the transcriptional architecture of retinogenesis.

Journal: Development (Cambridge, England)

Authors' code: AHK42/Sox2-VSX2_Analysis (GPL-2.0)

Status: code verified, 9 files readable, 1 match

[22402] doi:10.31661/jbpe.v0i0.2207-1521 [paper, data]

An Unsupervised Feature Extraction Method based on CLSTM-AE for Accurate P300 Classification in Brain-Computer Interface Systems.

Journal: Journal of biomedical physics & engineering

Status: data only, 1 dataset cited

[22403] doi:10.3390/life14121580 [paper, repository]

Enhancing Amyloid PET Quantification: MRI-Guided Super-Resolution Using Latent Diffusion Models.

Journal: Life (Basel, Switzerland)

Authors' code: mathworks.com/help/images (no license), jaygshah/LDM-RR (Apache-2.0)

Status: code verified, 50 files readable, 10 matches

[22404] doi:10.62641/aep.v52i6.1740 [paper, data]

Identification and Correlation Analysis of Ferroptosis-Related Genes in Three Brain Regions of Patients with Schizophrenia.

Journal: Actas espanolas de psiquiatria

Status: data only, 1 dataset cited

Saturday, 30 November 2024 (11 papers)

[22405] doi:10.1016/j.celrep.2024.115025 [paper, data]

Selenoprotein P is a target for regulating extracellular vesicle biogenesis and secretion from activated microglia in vivo.

Journal: Cell reports

Status: code on request, 1 dataset cited

[22406] doi:10.1016/j.heliyon.2024.e40790 [paper, data]

A cellulosic fibre foam as a bicycle helmet impact liner for brain injury mitigation in oblique impacts.

Journal: Heliyon

Status: data only, 2 datasets cited

[22407] doi:10.1016/j.nicl.2024.103719 [paper, data]

A multimodal Neuroimaging-Based risk score for mild cognitive impairment.

Journal: NeuroImage. Clinical

Status: data only, 2 datasets cited

[22408] doi:10.1038/s41467-024-54911-w [paper, repository]

Analysis of 1386 epileptogenic brain lesions reveals association with DYRK1A and EGFR.

Journal: Nature communications

Authors' code: christianbosselmann/LFE (no license), Zenodo 13983287 (CC-BY-4.0)

Status: code verified, 26 files readable, 10 matches

[22409] doi:10.1038/s41598-024-79390-3 [paper, repository]

Predicting cortical-thalamic functional connectivity using functional near-infrared spectroscopy and graph convolutional networks.

Journal: Scientific reports

Authors' code: YYYYYYHP/MKGCN (no license)

Status: code verified, 6 files readable, 1 match

[22410] doi:10.1038/s41598-024-80726-2 [paper, repository]

A novel computational model of swine ventricular myocyte reveals new insights into disease mechanisms and therapeutic approaches in Timothy Syndrome.

Journal: Scientific reports

Authors' code: shorturl.at/tqirn (no license)

Status: code verified

[22411] doi:10.1038/s41598-024-80770-y [paper, data]

Modified neuroimmune processes and emotional behaviour in weaned and late adolescent male and female mice born via caesarean section.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22412] doi:10.1038/s42004-024-01369-y [paper, repository]

A deep learning approach to real-time Markov modeling of ion channel gating.

Journal: Communications chemistry

Authors' code: AndaOuyang/FFT (no license), Zenodo 12750594 (GPL-3.0), Zenodo 13895808 (GPL-3.0)

Status: code verified, 3 files readable

[22413] doi:10.1111/psyp.14735 [paper, data]

Investigating the modulation of gastric sensations and disposition toward food with taVNS.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[22414] doi:10.1186/s12974-024-03302-5 [paper]

Synergistic effects of repeated transcranial magnetic stimulation and mesenchymal stem cells transplantation on alleviating neuroinflammation and PANoptosis in cerebral ischemia.

Journal: Journal of neuroinflammation

Status: data only

[22415] doi:10.3390/diagnostics14232710 [paper, data]

A Hybrid Deep Learning Model with Data Augmentation to Improve Tumor Classification Using MRI Images.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

Friday, 29 November 2024 (36 papers)

[22416] doi:10.1002/glia.24647 [paper]

Potassium Release From the Habenular Astrocytes Induces Depressive-Like Behaviors in Mice.

Journal: Glia

Status: code on request

[22417] doi:10.1002/jex2.70018 [paper, data]

Effects of electric fields on the release and content of extracellular vesicles.

Journal: Journal of extracellular biology

Status: data only, 1 dataset cited

[22418] doi:10.1007/s12264-024-01321-z [paper, repository]

A Novel Real-time Phase Prediction Network in EEG Rhythm.

Journal: Neuroscience bulletin

Authors' code: OpitzLab/CL-phase (MIT), onnx (no license), qt/qt5 (other)

Status: code verified, 2,009 files readable, 4 matches

[22419] doi:10.1016/j.cortex.2024.11.010 [paper, repository]

Cognitive control & the anterior cingulate cortex: Necessity & coherence.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Authors' code: high-dimensional/stroop (Apache-2.0)

Status: code verified, 6 files readable, 2 matches

[22420] doi:10.1016/j.eclinm.2024.102955 [paper]

A telerehabilitation program to improve visual perception in children and adolescents with hemianopia consecutive to a brain tumor: a single-arm feasibility and proof-of-concept trial.

Journal: EClinicalMedicine

Status: code on request

[22421] doi:10.1016/j.isci.2024.111506 [paper]

Exploring the neural mechanisms underlying cooperation and competition behavior: Insights from stereo-electroencephalography hyperscanning.

Journal: iScience

Status: code on request

[22422] doi:10.1016/j.jbc.2024.108032 [paper, data]

Dual-ligand fluorescence microscopy enables chronological and spatial histological assignment of distinct amyloid-β deposits.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[22423] doi:10.1016/j.xcrm.2024.101839 [paper]

Endoplasmic reticulum stress-related deficits in calcium clearance promote neuronal dysfunction that is prevented by SERCA2 gene augmentation.

Journal: Cell reports. Medicine

Status: code on request

[22424] doi:10.1038/s41380-024-02830-z [paper, repository]

Effects of psychoplastogens on blood levels of brain-derived neurotrophic factor (BDNF) in humans: a systematic review and meta-analysis.

Journal: Molecular psychiatry

Authors' code: OSF t7d4c (no license)

Status: code found, still to be checked

[22425] doi:10.1038/s41380-024-02854-5 [paper]

Structural alterations as a predictor of depression - a 7-Tesla MRI-based multidimensional approach.

Journal: Molecular psychiatry

Status: code on request

[22426] doi:10.1038/s41467-024-54712-1 [paper, repository]

Conditional neural field latent diffusion model for generating spatiotemporal turbulence.

Journal: Nature communications

Authors' code: jx-wang-s-group/CoNFiLD (Apache-2.0), Zenodo 14058397 (CC-BY-4.0)

Status: code verified, 82 files readable, 3 matches

[22427] doi:10.1038/s41467-024-54854-2 [paper, data]

MMP-2-triggered, mitochondria-targeted PROTAC-PDT therapy of breast cancer and brain metastases inhibition.

Journal: Nature communications

Status: data only, 1 dataset cited

[22428] doi:10.1038/s41531-024-00841-9 [paper]

MJF-14 proximity ligation assay detects early non-inclusion alpha-synuclein pathology with enhanced specificity and sensitivity.

Journal: NPJ Parkinson's disease

Status: code on request

[22429] doi:10.1038/s41540-024-00460-3 [paper, repository]

Robust parameter estimation and identifiability analysis with hybrid neural ordinary differential equations in computational biology.

Journal: NPJ systems biology and applications

Authors' code: cosbi-research/HNODECB (other)

Status: code verified, 132 files readable, 4 matches

[22430] doi:10.1038/s41598-024-79710-7 [paper, data]

Retinal imaging based glaucoma detection using modified pelican optimization based extreme learning machine.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22431] doi:10.1038/s42003-024-07224-z [paper, repository]

A function-based mapping of sensory integration along the cortical hierarchy.

Journal: Communications biology

Authors' code: K-Z-W/sensory-integration-model (no license), Zenodo 14045361 (CC-BY-4.0)

Status: code verified, 22 files readable, 4 matches

[22432] doi:10.1038/s42003-024-07283-2 [paper, repository]

Disrupted working memory event-related network dynamics in multiple sclerosis.

Journal: Communications biology

Authors' code: OHBA-analysis/Quinn2018_TaskHMM (MIT)

Status: code verified, 21 files readable, 9 matches

[22433] doi:10.1038/s44318-024-00307-x [paper]

Tubulin glutamylation regulates axon guidance via the selective tuning of microtubule-severing enzymes.

Journal: The EMBO journal

Status: data only

[22434] doi:10.1093/pnasnexus/pgae535 [paper, data]

Temporal attention amplifies stimulus information in fronto-cingulate cortex at an intermediate processing stage.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[22435] doi:10.1093/sleepadvances/zpae087 [paper, repository]

Comparison analysis between standard polysomnographic data and in-ear-electroencephalography signals: a preliminary study.

Journal: Sleep advances : a journal of the Sleep Research Society

Authors' code: GianpaoloPalo13/In_ear_EEG_vs_PSG (no license)

Status: code verified, 3 files readable, 14 matches

[22436] doi:10.1109/access.2024.3508761 [paper, repository]

Enhanced Partial Fourier MRI With Zero-Shot Deep Untrained Priors.

Journal: IEEE access : practical innovations, open solutions

Authors' code: G-who0212/Partial_Fourier_Reconstruction_With_Zero-Shot_Deep_Untrained_Generative_Prior (no license)

Status: code verified, 2 files readable

[22437] doi:10.1177/02698811241301216 [paper, data]

Ayahuasca enhances the formation of hippocampal-dependent episodic memory without impacting false memory susceptibility in experienced ayahuasca users: An observational study.

Journal: Journal of psychopharmacology (Oxford, England)

Status: data only, 1 dataset cited

[22438] doi:10.1186/s12974-024-03311-4 [paper, data]

Impact of perinatal factors on T cells and transcriptomic changes in preterm infant brain injury.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[22439] doi:10.1515/med-2024-1050 [paper, data]

Role of COX6C and NDUFB3 in septic shock and stroke.

Journal: Open medicine (Warsaw, Poland)

Status: data only, 1 dataset cited

[22440] doi:10.3389/fcell.2024.1484955 [paper, data]

Generation of an inducible dCas9-SAM human PSC line for endogenous gene activation.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[22441] doi:10.3389/fnagi.2024.1503806 [paper, repository]

Transcriptional patterns of brain structural abnormalities in CSVD-related cognitive impairment.

Journal: Frontiers in aging neuroscience

Authors' code: netneurolab/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 3 matches

[22442] doi:10.3390/brainsci14121211 [paper, repository]

Emotion Classification from Electroencephalographic Signals Using Machine Learning.

Journal: Brain sciences

Authors' code: artmen1516/eeg-emotion-classification-seedv (no license)

Status: code verified, 2 files readable, 6 matches

[22443] doi:10.3390/brainsci14121214 [paper, data]

Transcranial Magnetic Stimulation Attenuates Dyskinesias and FosB and c-Fos Expression in a Parkinson's Disease Model.

Journal: Brain sciences

Status: data only, 1 dataset cited

[22444] doi:10.3390/cells13231978 [paper, repository]

Herpes Simplex Virus 1 Infection of Human Brain Organoids and Pancreatic Stem Cell-Islets Drives Organoid-Specific Transcripts Associated with Alzheimer's Disease and Autoimmune Diseases.

Journal: Cells

Authors' code: elimlab/islets_dcOrgs (no license)

Status: code verified, 5 files readable, 1 match

[22445] doi:10.3390/diagnostics14232698 [paper, repository]

Schizophrenia Detection and Classification: A Systematic Review of the Last Decade.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: kaggle.com/c/mlsp-2014-mri (no license)

Status: dead link

[22446] doi:10.3390/genes15121547 [paper, repository]

TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation.

Journal: Genes

Authors' code: aysevllpkts/TrAnnoScope (MIT)

Status: code verified, 23 files readable, 7 matches

[22447] doi:10.3390/ijms252312834 [paper, data]

Chronological Dynamics of Neuroinflammatory Responses in a High-Fat Diet Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[22448] doi:10.3390/ijms252312871 [paper, repository]

Morphometric Similarity Patterning of Amyloid-<i>β</i> and Tau Proteins Correlates with Transcriptomics in the Alzheimer's Disease Continuum.

Journal: International journal of molecular sciences

Authors' code: netneurolab/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 4 matches

[22449] doi:10.3390/ijms252312872 [paper, data]

Age-Related sncRNAs in Human Hippocampal Tissue Samples: Focusing on Deregulated miRNAs.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[22450] doi:10.3390/ijms252312874 [paper, data]

LRRK2 G2019S Mutated iPSC-Derived Endothelial Cells Exhibit Increased α-Synuclein, Mitochondrial Impairment, and Altered Inflammatory Responses.

Journal: International journal of molecular sciences

Status: data only, 6 datasets cited

[22451] doi:10.7717/peerj-cs.2496 [paper, data]

Advancing multi-categorization and segmentation in brain tumors using novel efficient deep learning approaches.

Journal: PeerJ. Computer science

Status: data only, 5 datasets cited

Thursday, 28 November 2024 (35 papers)

[22452] doi:10.1002/advs.202410081 [paper, data]

Accurate Spatial Heterogeneity Dissection and Gene Regulation Interpretation for Spatial Transcriptomics using Dual Graph Contrastive Learning.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[22453] doi:10.1002/glia.24645 [paper, data]

Single Cell Deletion of the Transcription Factors Trps1 and Sox9 in Astrocytes Reveals Novel Functions in the Adult Cerebral Cortex.

Journal: Glia

Status: data only, 1 dataset cited

[22454] doi:10.1002/mp.17530 [paper, repository]

Dose distributions of proton therapy plans are robust against lowering the resolution of CTs combined with increasing noise.

Journal: Medical physics

Authors' code: Zenodo 14039122 (CC-BY-4.0)

Status: code verified, 13 files readable

[22455] doi:10.1002/mrm.30383 [paper, repository]

Exploring the need for a preload on the estimation of permeability, vessel radius, and relative cerebral blood volume in MR vascular fingerprinting-based dynamic susceptibility contrast perfusion imaging.

Journal: Magnetic resonance in medicine

Authors' code: NPann/MrVox2D (BSD-3-Clause)

Status: code verified, 29 files readable, 1 match

[22456] doi:10.1016/j.celrep.2024.114982 [paper]

Microglial APOE3 Christchurch protects neurons from Tau pathology in a human iPSC-based model of Alzheimer's disease.

Journal: Cell reports

Status: code on request

[22457] doi:10.1016/j.isci.2024.111497 [paper, repository]

Dynamic reconfiguration of aperiodic brain activity supports cognitive functioning in epilepsy: A neural fingerprint identification.

Journal: iScience

Authors' code: pierpaolosorrentino/Transition-Matrices- (no license), eamico/Clinical_fingerprinting (no license)

Status: code verified, 8 files readable, 1 match

[22458] doi:10.1016/j.isci.2024.111500 [paper, repository]

miR-193b-365 microcluster downstream of &lt;i&gt;Fezf2&lt;/i&gt; coordinates neuron-subtype identity and dendritic morphology in cortical projection neurons.

Journal: iScience

Authors' code: ENCODE-DCC/atac-seq-pipeline (MIT)

Status: code verified, 56 files readable, 2 matches

[22459] doi:10.1038/s41398-024-03188-0 [paper]

Aberrant encoding of event saliency in the orbitofrontal cortex following loss of the psychiatric-associated circular RNA, circHomer1.

Journal: Translational psychiatry

Status: code on request

[22460] doi:10.1038/s41467-024-54569-4 [paper, data]

Human single cell RNA-sequencing reveals a targetable CD8&lt;sup&gt;+&lt;/sup&gt; exhausted T cell population that maintains mouse low-grade glioma growth.

Journal: Nature communications

Status: data only, 1 dataset cited

[22461] doi:10.1038/s41467-024-54619-x [paper, repository]

Microglia regulate motor neuron plasticity via reciprocal fractalkine and adenosine signaling.

Journal: Nature communications

Authors' code: ABMARCIANTE/microglia_count_coloc-code_only_CY5_pink (no license), Zenodo 14047690 (CC-BY-4.0)

Status: code verified, 6 files readable

[22462] doi:10.1038/s41467-024-54744-7 [paper, data]

Structural basis of orientated asymmetry in a mGlu heterodimer.

Journal: Nature communications

Status: data only, 5 datasets cited

[22463] doi:10.1038/s41467-024-54750-9 [paper, data]

Transcription factors ASCL1 and OLIG2 drive glioblastoma initiation and co-regulate tumor cell types and migration.

Journal: Nature communications

Status: data only, 1 dataset cited

[22464] doi:10.1038/s41467-024-54827-5 [paper]

A brain-to-liver signal mediates the inhibition of liver regeneration under chronic stress in mice.

Journal: Nature communications

Status: code on request

[22465] doi:10.1038/s41539-024-00282-2 [paper]

Longitudinal markers of cognitive procedural learning in fronto-striatal circuits and putative effects of a BDNF plasticity-related variant.

Journal: NPJ science of learning

Status: code on request

[22466] doi:10.1038/s41586-024-08433-6 [paper, repository]

Individual variability of neural computations underlying flexible decisions.

Journal: Nature

Authors' code: Brody-Lab/flexible_decision_making_training (Apache-2.0), Brody-Lab/flexible_decision_making_rnn (Apache-2.0), Brody-Lab/flexible_decision_making_rats (Apache-2.0)

Status: code verified, 155 files readable, 8 matches

[22467] doi:10.1038/s41598-024-79043-5 [paper, repository]

Susceptibility-induced internal gradients reveal axon morphology and cause anisotropic effects in the diffusion-weighted MRI signal.

Journal: Scientific reports

Authors' code: MaP-science/susceptibility-and-axon-morphology (no license), drcmr.dk/susceptibility-and-axon-morphology-dataset (no license)

Status: code verified, 23 files readable, 1 match

[22468] doi:10.1038/s41598-024-80938-6 [paper, repository]

Enhancement and evaluation for deep learning-based classification of volumetric neuroimaging with 3D-to-2D knowledge distillation.

Journal: Scientific reports

Authors' code: LeaYoon/PPMI_3Dto2D_KD (no license)

Status: code verified, 29 files readable, 5 matches

[22469] doi:10.1038/s41598-024-81321-1 [paper, data]

Differential regulation of brain microvessel transcriptome and brain metabolome by western and heart-healthy dietary patterns in Ossabaw pigs.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22470] doi:10.1038/s44321-024-00178-z [paper, repository]

Bi-allelic variants in WDR47 cause a complex neurodevelopmental syndrome.

Journal: EMBO molecular medicine

Authors' code: alexdobin/STAR (MIT), fabricecordelieres/ij-plugin_kymotoolbox (GPL-3.0)

Status: code verified, 346 files readable, 1 match

[22471] doi:10.1088/1741-2552/ad9406 [paper, repository]

Transcranial focused ultrasound remotely modulates extrastriate visual cortex by stimulating frontal eye field with subregion specificity.

Journal: Journal of neural engineering

Authors' code: smithlabneuro/spikesort (no license)

Status: code verified, 29 files readable

[22472] doi:10.1111/ene.16559 [paper, data]

Enhancing multisensory rehabilitation of visual field defects with transcranial direct current stimulation: A randomized clinical trial.

Journal: European journal of neurology

Status: data only, 2 datasets cited

[22473] doi:10.1159/000542110 [paper, data]

Disruption Driving Innovation: Optimising Efficiency in Functional Neurosurgery.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[22474] doi:10.1186/s12885-024-13187-5 [paper]

Human stem cell models to unravel brain cancer.

Journal: BMC cancer

Status: data only

[22475] doi:10.1186/s13321-024-00933-x [paper, repository]

Group graph: a molecular graph representation with enhanced performance, efficiency and interpretability.

Journal: Journal of cheminformatics

Authors' code: piaoyang1992/group-graph (MIT)

Status: code verified, 33 files readable, 5 matches

[22476] doi:10.2147/ndt.s490717 [paper, data]

Bioinformatics Screening and Experimental Validation for Deciphering the Immune Signature of Late-Onset Depression.

Journal: Neuropsychiatric disease and treatment

Status: data only, 1 dataset cited

[22477] doi:10.3389/fninf.2024.1470845 [paper, repository]

Unsupervised method for representation transfer from one brain to another.

Journal: Frontiers in neuroinformatics

Authors' code: chenyaofo/pytorch-cifar-models (BSD-3-Clause)

Status: code verified, 18 files readable

[22478] doi:10.3389/fphys.2024.1458592 [paper, repository]

Epilepsy is associated with the accelerated aging of brain activity in sleep.

Journal: Frontiers in physiology

Authors' code: bdsp-core/BAI-EPILEPSY (no license)

Status: dead link

[22479] doi:10.3390/brainsci14121201 [paper, data]

Comparative Analysis of Single-Channel and Multi-Channel Classification of Sleep Stages Across Four Different Data Sets.

Journal: Brain sciences

Status: data only, 1 dataset cited

[22480] doi:10.3390/brainsci14121206 [paper, repository]

Connectivity in the Dorsal Visual Stream Is Enhanced in Action Video Game Players.

Journal: Brain sciences

Authors' code: OSF a97gh (no license)

Status: code verified, 74 files readable, 4 matches

[22481] doi:10.3390/genes15121541 [paper]

5-Hydroxytryptamine G-Protein-Coupled Receptor Family Genes: Key Players in Cancer Prognosis, Immune Regulation, and Therapeutic Response.

Journal: Genes

Status: data only

[22482] doi:10.7554/elife.85635 [paper, repository]

Evaluating hippocampal replay without a ground truth.

Journal: eLife

Authors' code: bendor-lab/replay_detection_cross_validation (CC0-1.0)

Status: code verified, 173 files readable, 7 matches

[22483] doi:10.7554/elife.92380 [paper, repository]

Whole-brain in situ mapping of neuronal activation in <i>Drosophila</i> during social behaviors and optogenetic stimulation.

Journal: eLife

Authors' code: kiichiwatanabelab/Hr38_eLife (MIT)

Status: code verified, 5 files readable, 3 matches

[22484] doi:10.7554/elife.96017 [paper, repository]

A deep learning approach for automated scoring of the Rey-Osterrieth complex figure.

Journal: eLife

Authors' code: methlabUZH/rey-figure (CC-BY-NC-4.0)

Status: code verified, 229 files readable, 9 matches

[22485] doi:10.7717/peerj-cs.2502 [paper, repository]

Normalized group activations based feature extraction technique using heterogeneous data for Alzheimer's disease classification.

Journal: PeerJ. Computer science

Authors' code: vkichu77/ADClassificationWithHetergenousData (MIT), Zenodo 13906540 (CC-BY-4.0)

Status: code verified, 14 files readable, 1 match

[22486] doi:10.7759/cureus.74691 [paper, repository]

Language Dominance in Left-Handers: Unveiling Left Hemisphere Global Dominance With Specific Right Hemisphere Regional Dominance.

Journal: Cureus

Authors' code: MSIB76/PE_numbers (no license)

Status: empty repository, 1 file readable

Wednesday, 27 November 2024 (36 papers)

[22487] doi:10.1007/s00259-024-06988-0 [paper, repository]

Incorporating label uncertainty during the training of convolutional neural networks improves performance for the discrimination between certain and inconclusive cases in dopamine transporter SPECT.

Journal: European journal of nuclear medicine and molecular imaging

Authors' code: lexej/cnn-datspect-classification (no license)

Status: code verified, 15 files readable, 2 matches

[22488] doi:10.1007/s00401-024-02835-6 [paper, data]

Elevated expression of the retrotransposon LINE-1 drives Alzheimer's disease-associated microglial dysfunction.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[22489] doi:10.1007/s43440-024-00679-1 [paper, repository]

Assessing the effects of 5-HT_2A and 5-HT_5A receptor antagonists on DOI-induced head-twitch response in male rats using marker-less deep learning algorithms.

Journal: Pharmacological reports : PR

Authors' code: sgoldenlab/simba (BSD-3-Clause), ksseverson57/campy (MIT)

Status: code verified, 432 files readable, 3 matches

[22490] doi:10.1016/j.celrep.2024.115013 [paper]

Development of MAPT S305 mutation human iPSC lines exhibiting elevated 4R tau expression and functional alterations in neurons and astrocytes.

Journal: Cell reports

Status: code on request

[22491] doi:10.1016/j.jacbts.2024.09.009 [paper, data]

Endothelial JCAD Worsens Acute Ischemic Stroke Outcomes by Enhancing Inflammation in Response to Ischemia/Reperfusion.

Journal: JACC. Basic to translational science

Status: data only, 1 dataset cited

[22492] doi:10.1038/s41467-024-54371-2 [paper, repository]

MYT1L deficiency impairs excitatory neuron trajectory during cortical development.

Journal: Nature communications

Authors' code: ScaleBio/ScaleRna (other), jdlabteam/yen-et-al-myt1l-snrnaseq (no license)

Status: code verified, 48 files readable, 12 matches

[22493] doi:10.1038/s41539-024-00278-y [paper, repository]

Native learning ability and not age determines the effects of brain stimulation.

Journal: NPJ science of learning

Authors' code: Zenodo 8089332 (CC-BY-4.0)

Status: code verified, 747 files readable, 7 matches

[22494] doi:10.1038/s41586-024-08260-9 [paper, repository]

Study design features increase replicability in brain-wide association studies.

Journal: Nature

Authors' code: KaidiK/RESI_BWAS (no license)

Status: code verified, 14 files readable, 7 matches

[22495] doi:10.1038/s41593-024-01800-6 [paper, repository]

Autism spectrum disorder variation as a computational trade-off via dynamic range of neuronal population responses.

Journal: Nature neuroscience

Authors' code: ComDePri/IncreasedDynamicRange (no license)

Status: code verified, 21 files readable, 14 matches

[22496] doi:10.1038/s41598-024-80888-z [paper, data]

Automated brain tumor recognition using equilibrium optimizer with deep learning approach on MRI images.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22497] doi:10.1038/s44271-024-00148-8 [paper, repository]

Self-esteem modulates the similarity of the representation of the self in the brains of others.

Journal: Communications psychology

Authors' code: OSF n7pr2 (no license)

Status: code verified, 9 files readable, 1 match

[22498] doi:10.1073/pnas.2407375121 [paper, data]

Molecular architecture of synaptic vesicles.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 9 datasets cited

[22499] doi:10.1073/pnas.2413415121 [paper, repository]

Diversification of pectoral control through motor pool extension.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 13998651 (CC-BY-4.0)

Status: code verified

[22500] doi:10.1073/pnas.2418024121 [paper, data]

Cis-regulatory elements driving motor neuron-selective viral payload expression within the mammalian spinal cord.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22501] doi:10.1083/jcb.202305081 [paper, data]

Identification of coilin interactors reveals coordinated control of Cajal body number and structure.

Journal: The Journal of cell biology

Status: data only, 1 dataset cited

[22502] doi:10.1091/mbc.e24-02-0061 [paper, repository]

Measurements of neurite extension and nucleokinesis in an iPSC-derived model system following microtubule perturbation.

Journal: Molecular biology of the cell

Authors' code: brouhardlab/Sebastien-2024 (no license)

Status: code verified, 1 file readable, 1 match

[22503] doi:10.1093/braincomms/fcae428 [paper, repository]

Single-cell analysis reveals expanded CD8⁺  <i>GZMK</i> ^high T cells in CSF and shared peripheral clones in sporadic amyotrophic lateral sclerosis.

Journal: Brain communications

Authors' code: arimthebig/ALS (no license)

Status: empty repository

[22504] doi:10.1098/rsob.240185 [paper, repository]

The structure of an amyloid precursor protein/talin complex indicates a mechanical basis of Alzheimer's disease.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7539167 (no license)

Status: code found, still to be checked

[22505] doi:10.1098/rspb.2024.1848 [paper, repository]

Uncovering the circadian transcriptome of &lt;i&gt;Nasonia vitripennis&lt;/i&gt;: insights into a non-canonical insect model.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7550490 (no license)

Status: code found, still to be checked

[22506] doi:10.1159/000542725 [paper, data]

Phantom Safety Assessment of 3 Tesla Magnetic Resonance Imaging in Directional and Sensing Deep Brain Stimulation Devices.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[22507] doi:10.1186/s40478-024-01891-z [paper, data]

Down syndrome frontal cortex layer III and layer V pyramidal neurons exhibit lamina specific degeneration in aged individuals.

Journal: Acta neuropathologica communications

Status: data only, 11 datasets cited

[22508] doi:10.1242/dmm.052062 [paper, data]

Early-life cisplatin exposure induces neuroinflammation and chemotherapy-induced neuropathic pain.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[22509] doi:10.1371/journal.pbio.3002888 [paper, data]

Elevated vesicular Zn2+ in dorsal root ganglion neurons expressing the transporter TMEM163 causes age-associated itchy skin in mice.

Journal: PLoS biology

Status: data only, 1 dataset cited

[22510] doi:10.1371/journal.pone.0312237 [paper, data]

REST-dependent glioma progression occurs independently of the repression of the long non-coding RNA HAR1A.

Journal: PloS one

Status: data only, 1 dataset cited

[22511] doi:10.1523/jneurosci.0810-24.2024 [paper, repository]

A "Conscious" Loss of Balance: Directing Attention to Movement Can Impair the Cortical Response to Postural Perturbations.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF f9tmp (no license)

Status: code verified, 4 files readable, 3 matches

[22512] doi:10.1523/jneurosci.1264-23.2024 [paper, repository]

Haploinsufficiency of &lt;i&gt;Syngap1&lt;/i&gt; in Striatal Indirect Pathway Neurons Alters Motor and Goal-Directed Behaviors in Mice.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: lhaetzel/imaris_extraction_code (no license)

Status: code verified, 37 files readable, 1 match

[22513] doi:10.21037/tcr-24-787 [paper, data]

Construction and validation of a novel prognostic model with palmitoylation-related genes for glioblastoma.

Journal: Translational cancer research

Status: data only, 1 dataset cited

[22514] doi:10.3389/fnins.2024.1444935 [paper, repository]

Comprehensive analysis of supervised learning methods for electrical source imaging.

Journal: Frontiers in neuroscience

Authors' code: SarahReynaud/stESI_pub (no license)

Status: code verified, 76 files readable, 14 matches

[22515] doi:10.3390/biom14121518 [paper, repository]

Multifaceted Role of Specialized Neuropeptide-Intensive Neurons on the Selective Vulnerability to Alzheimer's Disease in the Human Brain.

Journal: Biomolecules

Authors' code: linnarsson-lab/adult-human-brain (BSD-2-Clause), mancili/HNP (no license)

Status: code verified, 105 files readable, 5 matches

[22516] doi:10.3390/cells13231964 [paper, data]

JRM-28, a Novel HDAC2 Inhibitor, Upregulates Plasticity-Associated Proteins in Hippocampal Neurons and Enhances Morphological Plasticity via Activation of CREB: Implications for Alzheimer's Disease.

Journal: Cells

Status: data only, 1 dataset cited

[22517] doi:10.7554/elife.93060 [paper, repository]

Aligned and oblique dynamics in recurrent neural networks.

Journal: eLife

Authors' code: frschu/aligned_oblique_in_rnns (GPL-3.0)

Status: code verified, 30 files readable, 7 matches

[22518] doi:10.7554/elife.94000 [paper, data]

The BRAIN Initiative data-sharing ecosystem: Characteristics, challenges, benefits, and opportunities.

Journal: eLife

Status: data only, 5 datasets cited

[22519] doi:10.7554/elife.96357 [paper, data]

Circadian regulation of endoplasmic reticulum calcium response in cultured mouse astrocytes.

Journal: eLife

Status: data only, 1 dataset cited

[22520] doi:10.7554/elife.97188 [paper, data]

Attentional modulation of secondary somatosensory and visual thalamus of mice.

Journal: eLife

Status: data only, 1 dataset cited

[22521] doi:10.7717/peerj-cs.2425 [paper, repository]

Enhancing brain tumor MRI classification with an ensemble of deep learning models and transformer integration.

Journal: PeerJ. Computer science

Authors' code: supp:PMC11623201/peerj-cs-10-2425-s001.ipynb (no license)

Status: code verified, 1 file readable, 6 matches

[22522] doi:10.7717/peerj.18465 [paper, data]

Transiently elevated expression of different forms of brain-derived neurotrophic factor in the neonatal medial prefrontal cortex affected anxiety and depressive-like behaviors in adolescence.

Journal: PeerJ

Status: data only, 2 datasets cited

Tuesday, 26 November 2024 (34 papers)

[22523] doi:10.1016/j.bpsgos.2024.100423 [paper, repository]

Oscillating Mindfully: Using Machine Learning to Characterize Systems-Level Electrophysiological Activity During Focused Attention Meditation.

Journal: Biological psychiatry global open science

Authors' code: n0gaa/oscillating_mindfully (no license)

Status: code verified, 2 files readable, 1 match

[22524] doi:10.1016/j.csbj.2024.11.038 [paper, repository]

BrainCellR: A precise cell type nomenclature pipeline for comparative analysis across brain single-cell datasets.

Journal: Computational and structural biotechnology journal

Authors' code: WangLab-SINH/BrainCellR (MIT)

Status: code verified, 9 files readable

[22525] doi:10.1016/j.isci.2024.111481 [paper]

Demystifying visual word form area visual and nonvisual response properties with precision fMRI.

Journal: iScience

Status: code on request

[22526] doi:10.1016/j.ynirp.2024.100226 [paper, repository]

Neonatal inflammation and near-term white matter microstructure in infants born very preterm.

Journal: Neuroimage. Reports

Authors' code: vistalab/RTP-pipeline (no license)

Status: code verified, 33 files readable

[22527] doi:10.1017/s0033291724002617 [paper, repository]

Shared differential factors underlying individual spontaneous neural activity abnormalities in major depressive disorder.

Journal: Psychological medicine

Authors' code: gaussianprocess.org/gpml/code (no license)

Status: code verified

[22528] doi:10.1038/s41467-024-54451-3 [paper, repository]

Accelerated optimization in deep learning with a proportional-integral-derivative controller.

Journal: Nature communications

Authors' code: NoulliCHEN/PIDAO (GPL-3.0), Zenodo 13939583 (CC-BY-4.0)

Status: code verified, 318 files readable, 9 matches

[22529] doi:10.1038/s41467-024-54472-y [paper, repository]

Higher-order connectomics of human brain function reveals local topological signatures of task decoding, individual identification, and behavior.

Journal: Nature communications

Authors' code: Zenodo 13786223 (CC-BY-4.0), Zenodo 13786134 (CC-BY-4.0), andresantoro/Brain_HORS (GPL-3.0)

Status: code verified, 82 files readable, 12 matches

[22530] doi:10.1038/s41467-024-54657-5 [paper, repository]

Brain age prediction and deviations from normative trajectories in the neonatal connectome.

Journal: Nature communications

Authors' code: brain.labsolver.org/hcp_d2.html (no license), medicine.yale.edu/bioimaging/suite (no license), huiliii/infant_brain_age (no license)

Status: code verified, 33 files readable, 2 matches

[22531] doi:10.1038/s41467-024-54680-6 [paper, data]

Mina53 demethylates histone H4 arginine 3 asymmetric dimethylation to regulate neural stem/progenitor cell identity.

Journal: Nature communications

Status: data only, 1 dataset cited

[22532] doi:10.1038/s41467-024-54745-6 [paper, repository]

Neuronal diversity and stereotypy at multiple scales through whole brain morphometry.

Journal: Nature communications

Authors' code: Vaa3D (no license), vaa3d/vaa3d_tools (MIT), SD-Jiang/MorphoHub (MIT), neurogeom/CAR (MPL-2.0), fbrundu/pymrmr (MIT), Zenodo 13979929 (CC-BY-4.0), seu-allen-codebase/full_spectrum_sources (MIT)

Status: code verified, 2,161 files readable, 16 matches

[22533] doi:10.1038/s41598-024-80548-2 [paper, data]

Effective Alzheimer's disease detection using enhanced Xception blending with snapshot ensemble.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22534] doi:10.1038/s42003-024-07129-x [paper, repository]

Analgesic effects of high-frequency rTMS on pain anticipation and perception.

Journal: Communications biology

Authors' code: OSF 5jgxy (no license)

Status: code verified, 3 files readable, 3 matches

[22535] doi:10.1038/s42003-024-07297-w [paper, repository]

Different sustained and induced alpha oscillations emerge in the human auditory cortex during sound processing.

Journal: Communications biology

Authors' code: VictorLopezMadrona/Matlab_analysis_neuroscience (no license)

Status: code verified, 1,436 files readable, 2 matches

[22536] doi:10.1073/pnas.2400022121 [paper, data]

Neural responses to social rejection reflect dissociable learning about relational value and reward.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22537] doi:10.1073/pnas.2406998121 [paper]

Early disruption of the CREB pathway drives dendritic morphological alterations in FTD/ALS cortical neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[22538] doi:10.1093/braincomms/fcae425 [paper, repository]

Temporal dysregulation of the somatomotor network in agitated depression.

Journal: Brain communications

Authors' code: QunjunLIANG/agitatedMDD (MIT)

Status: code verified, 24 files readable, 7 matches

[22539] doi:10.1172/jci182235 [paper, data]

AAV9/SLC6A1 gene therapy rescues abnormal EEG patterns and cognitive behavioral deficiencies in Slc6a1-/- mice.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[22540] doi:10.1186/s13024-024-00773-1 [paper, repository]

Human VCP mutant ALS/FTD microglia display immune and lysosomal phenotypes independently of GPNMB.

Journal: Molecular neurodegeneration

Authors' code: ojziff/vcp_microglia (no license)

Status: code verified, 4 files readable, 11 matches

[22541] doi:10.1186/s13073-024-01410-8 [paper, data]

Integrated analyses of multi-omic data derived from paired primary lung cancer and brain metastasis reveal the metabolic vulnerability as a novel therapeutic target.

Journal: Genome medicine

Status: data only, 1 dataset cited

[22542] doi:10.1242/dev.204293 [paper, data]

Retinal ganglion cell-derived semaphorin 6A segregates starburst amacrine cell dendritic scaffolds to organize the mouse inner retina.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[22543] doi:10.1371/journal.pbio.3002892 [paper, repository]

Cilia structure and intraflagellar transport differentially regulate sensory response dynamics within and between C. elegans chemosensory neurons.

Journal: PLoS biology

Authors' code: Zenodo 13748735 (CC-BY-4.0)

Status: code verified

[22544] doi:10.1371/journal.pone.0308125 [paper, repository]

Robust and memory-less median estimation for real-time spike detection.

Journal: PloS one

Authors' code: IIBM/fast-median (MIT)

Status: code verified, 18 files readable

[22545] doi:10.1371/journal.pone.0311358 [paper, repository]

STEED: A data mining tool for automated extraction of experimental parameters and risk of bias items from in vivo publications.

Journal: PloS one

Authors' code: Ineichen-Group/Auto-STEED (no license)

Status: code verified, 2 files readable, 2 matches

[22546] doi:10.14440/jbm.2025.0069 [paper, data]

Electroencephalogram-based time-frequency analysis for Alzheimer's disease detection using machine learning.

Journal: Journal of biological methods

Status: data only, 1 dataset cited

[22547] doi:10.1523/eneuro.0084-24.2024 [paper, data]

Fragile Mentalizing: Lack of Behavioral and Neural Markers of Social Cognition in an Established Social Perspective Taking Task when Combined with Stress Induction.

Journal: eNeuro

Status: data only, 1 dataset cited

[22548] doi:10.26508/lsa.202402823 [paper, repository]

Morphoregulatory ADD3 underlies glioblastoma growth and formation of tumor-tumor connections.

Journal: Life science alliance

Authors' code: kalebiclab/morphoadd3 (BSD-3-Clause), raf91/add3-project (no license)

Status: code verified, 6 files readable, 2 matches

[22549] doi:10.3389/fncom.2024.1508297 [paper, data]

Spike-HAR++: an energy-efficient and lightweight parallel spiking transformer for event-based human action recognition.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[22550] doi:10.3389/fnhum.2024.1461960 [paper, data]

Four-class ASME BCI: investigation of the feasibility and comparison of two strategies for multiclassing.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[22551] doi:10.3389/fninf.2024.1444650 [paper, data]

Enhanced brain tumor diagnosis using combined deep learning models and weight selection technique.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[22552] doi:10.3390/ani14233413 [paper, data]

Acute Stress Effects over Time on the Gene Expression and Neurotransmitter Patterns in the Carp (&lt;i&gt;Cyprinus carpio&lt;/i&gt;) Brain.

Journal: Animals : an open access journal from MDPI

Status: data only, 1 dataset cited

[22553] doi:10.3390/brainsci14121181 [paper, repository]

Meditation-Induced Self-Boundary Flexibility and Prosociality: A MEG and Behavioral Measures Study.

Journal: Brain sciences

Authors' code: yuval-harpaz/cleanMEG_BIU (gpl)

Status: code verified, 149 files readable

[22554] doi:10.3390/brainsci14121186 [paper, data]

rTMS Modulation of Behavioral and Biological Measures in 3xTg-AD Mice.

Journal: Brain sciences

Status: data only, 1 dataset cited

[22555] doi:10.3390/nu16234065 [paper, data]

Plasma Polyunsaturated Fatty Acid Levels and Mental Health in Middle-Aged and Elderly Adults.

Journal: Nutrients

Status: data only, 1 dataset cited

[22556] doi:10.7554/elife.89519 [paper, repository]

Basolateral amygdala oscillations enable fear learning in a biophysical model.

Journal: eLife

Authors' code: annacatt/Basolateral_amygdala_oscillations_enable_fear_learning_in_a_biophysical_model (MIT)

Status: code verified, 8 files readable, 3 matches

Monday, 25 November 2024 (29 papers)

[22557] doi:10.1016/j.bbih.2024.100911 [paper, data]

Biological sex, microglial signaling pathways, and radiation exposure shape cortical proteomic profiles and behavior in mice.

Journal: Brain, behavior, & immunity - health

Status: data only, 1 dataset cited

[22558] doi:10.1038/s41380-024-02833-w [paper, repository]

Multimodal beneficial effects of BNN27, a nerve growth factor synthetic mimetic, in the 5xFAD mouse model of Alzheimer's disease.

Journal: Molecular psychiatry

Authors' code: ftwkoopmans/msdap (GPL-3.0)

Status: code verified, 78 files readable, 3 matches

[22559] doi:10.1038/s41398-024-03186-2 [paper, repository]

Decreased prefrontal glutamatergic function is associated with a reduced astrocyte-related gene expression in treatment-resistant depression.

Journal: Translational psychiatry

Authors' code: BM (no license)

Status: code verified

[22560] doi:10.1038/s41590-024-02011-8 [paper, data]

Macrophages and nociceptor neurons form a sentinel unit around fenestrated capillaries to defend the synovium from circulating immune challenge.

Journal: Nature immunology

Status: code on request, 2 datasets cited

[22561] doi:10.1038/s41598-024-73907-6 [paper, repository]

ExCS: accelerating code search with code expansion.

Journal: Scientific reports

Authors' code: huggingface.co/datasets/code_search_net (no license)

Status: empty repository, 1 file readable

[22562] doi:10.1038/s41598-024-79621-7 [paper, repository]

Composite bayesian optimization in function spaces ising NEON-Neural Epistemic Operator Networks.

Journal: Scientific reports

Authors' code: dmitrySorokin/interferobotProject (MIT), Ryandry1st/CCO-in-ORAN (no license), PredictiveIntelligenceLab (no license)

Status: code verified, 8 files readable

[22563] doi:10.1038/s41698-024-00760-1 [paper, repository]

Deep mutual learning on hybrid amino acid PET predicts H3K27M mutations in midline gliomas.

Journal: NPJ precision oncology

Authors' code: jacobgil/pytorch-grad-cam (MIT), MianxinLiu/MET-FET-AT-CNN (no license)

Status: code verified, 80 files readable, 11 matches

[22564] doi:10.1038/s43856-024-00654-0 [paper, repository]

Using high-frequency oscillations from brief intraoperative neural recordings to predict the seizure onset zone.

Journal: Communications medicine

Authors' code: InceLab/IOM-HFO (no license), Zenodo 13820227 (CC-BY-4.0)

Status: code verified, 52 files readable, 4 matches

[22565] doi:10.1038/s44172-024-00319-9 [paper, repository]

Insights from a multiscale framework on metabolic rate variation driving glioblastoma multiforme growth and invasion.

Journal: Communications engineering

Authors' code: ebi.ac.uk/biomodels/model2404050001 (no license)

Status: code verified

[22566] doi:10.1049/htl2.12099 [paper, repository]

PitRSDNet: Predicting intra-operative remaining surgery duration in endoscopic pituitary surgery.

Journal: Healthcare technology letters

Authors' code: life4/textdistance (MIT)

Status: code verified, 58 files readable

[22567] doi:10.1073/pnas.2403810121 [paper, data]

AgRP neurons mediate activity-dependent development of oxytocin connectivity and autonomic regulation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22568] doi:10.1073/pnas.2409487121 [paper, repository]

Dynamic tuning of neural stability for cognitive control.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: muyuan-xu/Dynamic-tuning-of-neural-stability-RNN (MIT)

Status: code verified, 19 files readable, 5 matches

[22569] doi:10.1080/20565623.2024.2422791 [paper, data]

Thioctic acid shield against lipopolysaccharide depression and endoplasmic reticulum stress: GR7M/Homer/ATF6 signaling.

Journal: Future science OA

Status: data only, 1 dataset cited

[22570] doi:10.1093/braincomms/fcae423 [paper, repository]

Functional network disruption in cognitively unimpaired autosomal dominant Alzheimer's disease: a magnetoencephalography study.

Journal: Brain communications

Authors' code: CornelisStam/BrainWave (no license)

Status: empty repository, 1 file readable

[22571] doi:10.1093/pnasnexus/pgae531 [paper, repository]

Predicting attentional focus: Heartbeat-evoked responses and brain dynamics during interoceptive and exteroceptive processing.

Journal: PNAS nexus

Authors' code: OSF r7uqp (no license)

Status: code verified, 2 files readable, 1 match

[22572] doi:10.1101/2024.11.23.624988 [paper, data]

Molecular patterns of evolutionary changes throughout the whole nervous system of multiple nematode species

Journal: bioRxiv (preprint)

Status: data only, 5 datasets cited

[22573] doi:10.1111/ejn.16616 [paper, data]

Attenuated processing of task-irrelevant speech and other auditory stimuli: fMRI evidence from arithmetic tasks.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[22574] doi:10.1162/imag_a_00361 [paper, data]

Internally consistent and fully unbiased multimodal MRI brain template construction from UK Biobank: Oxford-MM.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[22575] doi:10.1162/imag_a_00367 [paper, repository]

Sensitivity of unconstrained quantitative magnetization transfer MRI to amyloid burden in preclinical Alzheimer's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: JakobAsslaender/MRFingerprintingRecon.jl (MIT), andrewwmao/BiasReducedNetworks (MIT)

Status: code verified, 45 files readable, 3 matches

[22576] doi:10.1186/s12883-024-03965-w [paper, data]

Decoding neuronal genes in stroke-induced pain: insights from single-nucleus sequencing in mice.

Journal: BMC neurology

Status: data only, 1 dataset cited

[22577] doi:10.1186/s12916-024-03784-3 [paper, repository]

Hierarchical individual variation and socioeconomic impact on personalized functional network topography in children.

Journal: BMC medicine

Authors' code: spin-test/spin-test (MIT), CuiLabCIBR/SingleFuncParcel_ABCD (no license)

Status: code verified, 168 files readable, 3 matches

[22578] doi:10.1186/s13024-024-00779-9 [paper, repository]

The Parkinson's disease risk gene cathepsin B promotes fibrillar alpha-synuclein clearance, lysosomal function and glucocerebrosidase activity in dopaminergic neurons.

Journal: Molecular neurodegeneration

Authors' code: neuroeddu/OrgQ (no license), Zenodo 3738323 (CC-BY-4.0), Zenodo 6524616 (CC-BY-4.0), Zenodo 6430401 (CC-BY-4.0)

Status: code verified, 2 files readable

[22579] doi:10.1186/s13059-024-03440-2 [paper, repository]

Hierarchical annotation of eQTLs by H-eQTL enables identification of genes with cell type-divergent regulation.

Journal: Genome biology

Authors' code: PFPrzytycki/Hierarchical_eQTL (GPL-2.0), Zenodo 11285606 (no license)

Status: code verified, 8 files readable, 9 matches

[22580] doi:10.1364/boe.538560 [paper, repository]

Absolute depth-resolved optic axis measurement with catheter-based polarization sensitive optical coherence tomography.

Journal: Biomedical optics express

Authors' code: CBORT-NCBIB/GuideStarOpticAxisReconstruction (no license)

Status: code verified, 38 files readable, 13 matches

[22581] doi:10.21203/rs.3.rs-5397645/v1 [paper, data]

Evaluation of fetal exposure to environmental noise using a computer-generated model

Journal: Research Square (preprint)

Status: data only, 2 datasets cited

[22582] doi:10.2147/ijgm.s486214 [paper, data]

Integrated Transcriptomic and Machine Learning Analysis Identifies <i>EAF2</i> as a Diagnostic Biomarker and Key Pathogenic Factor in Parkinson's Disease.

Journal: International journal of general medicine

Status: data only, 1 dataset cited

[22583] doi:10.3389/fncel.2024.1477753 [paper, repository]

Interlaminar and varicose-projection astrocytes: toward a new understanding of the primate brain.

Journal: Frontiers in cellular neuroscience

Authors' code: phylot.biobyte.de (no license)

Status: code verified

[22584] doi:10.3389/fnhum.2024.1393284 [paper, data]

Characterizing iconic gesture during narratives in chronic traumatic brain injury recovery.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[22585] doi:10.7554/elife.97598 [paper, repository]

Noisy neuronal populations effectively encode sound localization in the dorsal inferior colliculus of awake mice.

Journal: eLife

Authors' code: ebi.ac.uk/biostudies/bioimages (no license)

Status: code verified

Sunday, 24 November 2024 (7 papers)

[22586] doi:10.1002/nbm.5286 [paper, repository]

In vivo rat brain mapping of multiple gray matter water populations using nonparametric D(ω)-R&lt;sub&gt;1&lt;/sub&gt;-R&lt;sub&gt;2&lt;/sub&gt; distributions MRI.

Journal: NMR in biomedicine

Authors' code: maximeYon/MMD (no license)

Status: code verified, 1,589 files readable, 12 matches

[22587] doi:10.1038/s41380-024-02847-4 [paper, repository]

Disruption of macroscale functional network organisation in patients with frontotemporal dementia.

Journal: Molecular psychiatry

Authors' code: mvlearn.github.io/references (no license)

Status: code verified

[22588] doi:10.1038/s41419-024-07179-3 [paper, repository]

Enhancing mitochondrial one-carbon metabolism is neuroprotective in Alzheimer's disease models.

Journal: Cell death & disease

Authors' code: m1gus.github.io/ad-fa (no license)

Status: code verified

[22589] doi:10.1038/s41467-024-54742-9 [paper, repository]

Preconfigured cortico-thalamic neural dynamics constrain movement-associated thalamic activity.

Journal: Nature communications

Authors' code: Zenodo 14042893 (CC-BY-4.0)

Status: code verified, 10 files readable

[22590] doi:10.1049/syb2.12103 [paper, repository]

DDANet: A deep dilated attention network for intracerebral haemorrhage segmentation.

Journal: IET systems biology

Authors' code: hpguo1982/DDANet (no license)

Status: code verified, 8 files readable, 8 matches

[22591] doi:10.1177/25424823241289804 [paper, data]

Identifying shared diagnostic genes and mechanisms in vascular dementia and Alzheimer's disease via bioinformatics and machine learning.

Journal: Journal of Alzheimer's disease reports

Status: data only, 1 dataset cited

[22592] doi:10.3390/s24237488 [paper, repository]

Smart Autism Spectrum Disorder Learning System Based on Remote Edge Healthcare Clinics and Internet of Medical Things.

Journal: Sensors (Basel, Switzerland)

Authors' code: abdullah-lakhan/asd-code-and-datasets (no license)

Status: empty repository, 1 file readable

Saturday, 23 November 2024 (12 papers)

[22593] doi:10.1016/j.crneur.2024.100143 [paper]

Retinotopic biases in contextual feedback signals to V1 for object and scene processing.

Journal: Current research in neurobiology

Status: code on request

[22594] doi:10.1016/j.isci.2024.111448 [paper]

Accumulation of alpha-synuclein pathology in the liver exhibits post-translational modifications associated with Parkinson's disease.

Journal: iScience

Status: code on request

[22595] doi:10.1016/j.isci.2024.111463 [paper, repository]

Divergent brain solute clearance in rat models of cerebral amyloid angiopathy and Alzheimer's disease.

Journal: iScience

Authors' code: Zenodo 7839019 (other-open), xinan-nancy-chen/uromt (MIT)

Status: code verified, 56 files readable

[22596] doi:10.1016/j.isci.2024.111472 [paper, repository]

Sophisticated perspective-takers are distinctive: Neural idiosyncrasy of functional connectivity in the mentalizing network.

Journal: iScience

Authors' code: yu47726/Sophisticated-perspective-takers-are-distinctive (no license)

Status: code verified, 6 files readable, 1 match

[22597] doi:10.1038/s41380-024-02843-8 [paper, data]

Dopamine release and dopamine-related gene expression in the amygdala are modulated by the gastrin-releasing peptide in opposite directions during stress-enhanced fear learning and extinction.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[22598] doi:10.1038/s41467-024-54547-w [paper, repository]

Multi-omic and single-cell profiling of chromothriptic medulloblastoma reveals genomic and transcriptomic consequences of genome instability.

Journal: Nature communications

Authors' code: hoefer-lab/phy_clo_dy (no license), trace.ncbi.nlm.nih.gov/traces (no license), PMBio/MB_scSeq (no license)

Status: code verified, 99 files readable, 33 matches

[22599] doi:10.1038/s41467-024-54579-2 [paper, repository]

Single-cell transcriptomics unveils molecular signatures of neuronal vulnerability in a mouse model of prion disease that overlap with Alzheimer's disease.

Journal: Nature communications

Authors' code: jslota/scRNAseq_prion_neuronal_vulnerability (GPL-3.0)

Status: code verified, 48 files readable, 26 matches

[22600] doi:10.1038/s41597-024-04117-y [paper, repository]

A multi-region single nucleus transcriptomic atlas of Parkinson's disease.

Journal: Scientific data

Authors' code: DiseaseNeuroGenomics/AMP-PD_SciData (MIT), app.terra.bio (no license)

Status: code verified, 5 files readable, 3 matches

[22601] doi:10.1038/s42003-024-07273-4 [paper, data]

Modeling early phenotypes of Parkinson's disease by age-induced midbrain-striatum assembloids.

Journal: Communications biology

Status: data only, 1 dataset cited

[22602] doi:10.3390/cells13231952 [paper, data]

Overexpression of Egr1 Transcription Regulator Contributes to Schwann Cell Differentiation Defects in Neural Crest-Specific &lt;i&gt;Adar1&lt;/i&gt; Knockout Mice.

Journal: Cells

Status: data only, 1 dataset cited

[22603] doi:10.3390/diagnostics14232638 [paper, data]

TMS: Ensemble Deep Learning Model for Accurate Classification of Monkeypox Lesions Based on Transformer Models with SVM.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[22604] doi:10.3390/diagnostics14232640 [paper, data]

Etiology of Late-Onset Alzheimer's Disease, Biomarker Efficacy, and the Role of Machine Learning in Stage Diagnosis.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 22 November 2024 (35 papers, 20 on this page)

[22605] doi:10.1016/j.crmeth.2024.100907 [paper]

Accelerated protein retention expansion microscopy using microwave radiation.

Journal: Cell reports methods

Status: code on request

[22606] doi:10.1016/j.isci.2024.111439 [paper, repository]

Context familiarity is a third kind of episodic memory distinct from item familiarity and recollection.

Journal: iScience

Authors' code: IMAP-Lab/IMAP-Lab-IMAP-Implicit-Memory-Automated-Pipeline (GPL-2.0)

Status: code verified, 6 files readable

[22607] doi:10.1016/j.ohx.2024.e00611 [paper, data]

Low cost, portable, 3D printable tissue precision slicer.

Journal: HardwareX

Status: data only, 1 dataset cited

[22608] doi:10.1016/j.ydbio.2024.11.009 [paper, data]

Spatiotemporal characterization of cyclooxygenase pathway enzymes during vertebrate embryonic development.

Journal: Developmental biology

Status: data only, 1 dataset cited

[22609] doi:10.1017/s2633903x24000114 [paper, repository]

Bridging the gap: Integrating cutting-edge techniques into biological imaging with deepImageJ.

Journal: Biological imaging

Authors' code: henriqueslab/zerocostdl4mic (MIT), deepimagej/case-studies (MIT)

Status: code verified, 59 files readable, 7 matches

[22610] doi:10.1038/s41467-024-54243-9 [paper, repository]

Microstructural asymmetry in the human cortex.

Journal: Nature communications

Authors' code: wanb-psych/microstructural_asymmetry (no license)

Status: code verified, 9 files readable, 2 matches

[22611] doi:10.1038/s41467-024-54430-8 [paper, data]

BTK regulates microglial function and neuroinflammation in human stem cell models and mouse models of multiple sclerosis.

Journal: Nature communications

Status: data only, 1 dataset cited

[22612] doi:10.1038/s41467-024-54448-y [paper, repository]

A multi-regional human brain atlas of chromatin accessibility and gene expression facilitates promoter-isoform resolution genetic fine-mapping.

Journal: Nature communications

Authors' code: CCDG/Pipeline-Standardization (no license), Zenodo 13922059 (CC-BY-4.0)

Status: code verified, 28 files readable, 19 matches

[22613] doi:10.1038/s41467-024-54488-4 [paper, data]

Histone lactylation mediated by Fam172a in POMC neurons regulates energy balance.

Journal: Nature communications

Status: data only, 1 dataset cited

[22614] doi:10.1038/s41531-024-00833-9 [paper]

Awake versus asleep deep brain stimulation targeting the caudal zona incerta for essential tremor.

Journal: NPJ Parkinson's disease

Status: code on request

[22615] doi:10.1038/s41588-024-01961-x [paper, repository]

Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer's disease.

Journal: Nature genetics

Authors' code: swaruplabUCI/DSAD_Spatial_Miyoshi_Morabito_2024 (no license)

Status: code verified, 99 files readable, 33 matches

[22616] doi:10.1038/s41593-024-01784-3 [paper, repository]

Predicting modular functions and neural coding of behavior from a synaptic wiring diagram.

Journal: Nature neuroscience

Authors' code: seung-lab/Alembic (MIT), seung-lab/BigArrays.jl (Apache-2.0), seung-lab/ChunkFlow.jl (Apache-2.0), seung-lab/Watershed.jl (GPL-3.0), seung-lab/Agglomeration (MIT), seung-lab/RealNeuralNetworks.jl (Apache-2.0), ashwinvish/Zfish_recon (no license), goldman-lab/Connectome-Model (no license)

Status: code verified, 347 files readable, 17 matches

[22617] doi:10.1038/s41598-024-79090-y [paper, repository]

Dual-task vision transformer for rapid and accurate intracerebral hemorrhage CT image classification.

Journal: Scientific reports

Authors' code: JFan1997/DTViT (no license)

Status: dead link

[22618] doi:10.1038/s41598-024-79817-x [paper, repository]

Comparing structure-function relationships in brain networks using EEG and fNIRS.

Journal: Scientific reports

Authors' code: RosmaryBlancoSano/Structure-Function-Relationship-EEG-and-fNIRS (no license)

Status: dead link

[22619] doi:10.1038/s41598-024-80593-x [paper, repository]

Blood osmolytes such as sugar can drive brain fluid flows in a poroelastic model.

Journal: Scientific reports

Authors' code: Zenodo 13808345 (CC-BY-4.0), peterarbork/poroelasticosmoglymphatics (MIT)

Status: code verified, 10 files readable

[22620] doi:10.1038/s42003-024-07256-5 [paper]

Claustrum modulation drives altered prefrontal cortex dynamics and connectivity.

Journal: Communications biology

Status: code on request

[22621] doi:10.1038/s44319-024-00316-1 [paper, data]

The DNA demethylase TET1 modifies the impact of maternal folic acid status on embryonic brain development.

Journal: EMBO reports

Status: data only, 1 dataset cited

[22622] doi:10.1093/pnasnexus/pgae525 [paper, repository]

Continuous Quasi-Attractors dissolve with too much - or too little - variability.

Journal: PNAS nexus

Authors' code: OSF qkajx (no license)

Status: code verified, 1 file readable

[22623] doi:10.1111/epi.18191 [paper, data]

Focal negative motor seizures: Multimodal evaluation.

Journal: Epilepsia

Status: data only, 2 datasets cited

[22624] doi:10.1113/ep092219 [paper, repository]

Imaging the large-scale and cellular response to focal traumatic brain injury in mouse neocortex.

Journal: Experimental physiology

Authors' code: margolislab/Bibineyshvili_2024 (GPL-3.0)

Status: code verified, 13 files readable

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