Every paper, by date: page 102

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 102 of 200: 22 November 2024 to 14 November 2024.

Friday, 22 November 2024 (35 papers, 15 on this page)

[22625] doi:10.1126/sciadv.adp0453 [paper, data]

The human social cognitive network contains multiple regions within the amygdala.

Journal: Science advances

Status: data only, 1 dataset cited

[22626] doi:10.1126/sciadv.adp4431 [paper, repository]

Hemochromatosis neural archetype reveals iron disruption in motor circuits.

Journal: Science advances

Authors' code: Zenodo 12535194 (CC-BY-4.0), robloughnan/pvs (GPL-3.0)

Status: code verified, 6 files readable, 2 matches

[22627] doi:10.1128/mbio.01914-24 [paper, data]

Structural basis of a microbial trimethylamine transporter.

Journal: mBio

Status: data only, 6 datasets cited

[22628] doi:10.1162/opmi_a_00170 [paper, repository]

Object Feature Memory Is Distorted by Category Structure.

Journal: Open mind : discoveries in cognitive science

Authors' code: schapirolab/color-cat (no license)

Status: code verified, 2 files readable, 1 match

[22629] doi:10.1162/opmi_a_00174 [paper, repository]

Electrophysiology Reveals That Intuitive Physics Guides Visual Tracking and Working Memory.

Journal: Open mind : discoveries in cognitive science

Authors' code: OSF csarg (no license)

Status: code verified, 4 files readable, 2 matches

[22630] doi:10.1186/s10194-024-01897-x [paper, data]

Distinct expression profile reveals glia involvement in the trigeminal system attributing to post-traumatic headache.

Journal: The journal of headache and pain

Status: code on request, 1 dataset cited

[22631] doi:10.1186/s13195-024-01619-0 [paper, repository]

Elevated plasma p-tau231 is associated with reduced generalization and medial temporal lobe dynamic network flexibility among healthy older African Americans.

Journal: Alzheimer's research & therapy

Authors' code: Aging-and-Brain-Health-Alliance/GluckLab (AGPL-3.0)

Status: code verified, 12 files readable

[22632] doi:10.1371/journal.pone.0291099 [paper, repository]

Family lexicon: Using language models to encode memories of personally familiar and famous people and places in the brain.

Journal: PloS one

Authors' code: OSF sjtmn (no license), biosemi.com/pics/cap_128_layout_medium.jpg (no license)

Status: code verified, 19 files readable, 6 matches

[22633] doi:10.1371/journal.pone.0308554 [paper, repository]

Cortical encoding of phonetic onsets of both attended and ignored speech in hearing impaired individuals.

Journal: PloS one

Authors' code: cnspworkshop.net (no license)

Status: code verified

[22634] doi:10.14440/jbm.2024.0043 [paper, data]

Combined T1-weighted MRI and diffusion MRI tractography of paraventricular, locus coeruleus, and dorsal vagal complex connectivity in brainstem-hypothalamic nuclei.

Journal: Journal of biological methods

Status: data only, 1 dataset cited

[22635] doi:10.2147/jpr.s470750 [paper]

Identification of Specific Abnormal Brain Functional Activity and Connectivity in Cancer Pain Patients: A Preliminary Resting-State fMRI Study.

Journal: Journal of pain research

Status: code on request

[22636] doi:10.26508/lsa.202402791 [paper]

Vascular dysfunction is at the onset of oxaliplatin-induced peripheral neuropathy symptoms in mice.

Journal: Life science alliance

Status: data only

[22637] doi:10.3390/brainsci14121166 [paper, data]

Emotion Recognition Based on a EEG-fNIRS Hybrid Brain Network in the Source Space.

Journal: Brain sciences

Status: data only, 1 dataset cited

[22638] doi:10.3892/mmr.2024.13396 [paper, data]

Ciliary neurotrophic factor activation of astrocytes mediates neuronal damage via the IL‑6/IL‑6R pathway.

Journal: Molecular medicine reports

Status: data only, 1 dataset cited

[22639] doi:10.7554/elife.87083 [paper, repository]

Switching of RNA splicing regulators in immature neuroblasts during adult neurogenesis.

Journal: eLife

Authors' code: achicheportiche/bernou2024 (CC0-1.0)

Status: code verified, 9 files readable, 6 matches

Thursday, 21 November 2024 (33 papers)

[22640] doi:10.1002/alz.14345 [paper, repository]

Biological validation of peak-width of skeletonized mean diffusivity as a VCID biomarker: The MarkVCID Consortium.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: markvcid.partners.org (no license)

Status: code verified

[22641] doi:10.1002/mds.30064 [paper, data]

Low-Frequency Deep Brain Stimulation in Non-Rapid Eye Movement Sleep Modifies Memory Retention in Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Status: data only, 1 dataset cited

[22642] doi:10.1007/s10571-024-01505-1 [paper, repository]

Rasopathy-Associated Mutation Ptpn11^D61Y has Age-Dependent Effect on Synaptic Vesicle Recycling.

Journal: Cellular and molecular neurobiology

Authors' code: EvaMWe/Synapse-quantification (no license)

Status: dead link

[22643] doi:10.1007/s11011-024-01432-6 [paper, repository]

Altered markers of brain metabolism and excitability are associated with executive functioning in young children exposed to alcohol in utero.

Journal: Metabolic brain disease

Authors' code: HarrisBrainLab/TissueCorrections (no license), developmental-neuroimaging-lab/mrs (GPL-3.0), OSF 4zkd8 (no license)

Status: code verified, 16 files readable, 8 matches

[22644] doi:10.1016/j.isci.2024.111328 [paper]

Secure attachment to caregiver prevents adult depressive symptoms in a sex-dependent manner: A translational study.

Journal: iScience

Status: code on request

[22645] doi:10.1016/j.nicl.2024.103707 [paper, repository]

Prediction of methylphenidate treatment response for ADHD using conventional and radiomics T1 and DTI features: Secondary analysis of a randomized clinical trial.

Journal: NeuroImage. Clinical

Authors' code: Mancy-Chen/ePOD-MPH (MIT)

Status: code verified, 10 files readable, 11 matches

[22646] doi:10.1038/s41419-024-07236-x [paper, data]

Gain of 1q confers an MDM4-driven growth advantage to undifferentiated and differentiating hESC while altering their differentiation capacity.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[22647] doi:10.1038/s41467-024-54320-z [paper, repository]

Early and late place cells during postnatal development of the hippocampus.

Journal: Nature communications

Authors' code: XiaojingChenLab/EarlyPlaceCell (no license), Zenodo 13911919 (CC-BY-4.0)

Status: code verified, 1 file readable

[22648] doi:10.1038/s41467-024-54376-x [paper, repository]

Astrocytic inhibition of lateral septal neurons promotes diverse stress responses.

Journal: Nature communications

Authors' code: Zenodo 13917386 (CC-BY-4.0), won165/fp2 (no license)

Status: code verified, 10 files readable

[22649] doi:10.1038/s41536-024-00379-7 [paper, repository]

Peripheral nerve-derived CSF1 induces BMP2 expression in macrophages to promote nerve regeneration and wound healing.

Journal: NPJ Regenerative medicine

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[22650] doi:10.1038/s41562-024-02051-y [paper, repository]

The shared genetic architecture and evolution of human language and musical rhythm.

Journal: Nature human behaviour

Authors' code: genomicsem/genomicsem (GPL-3.0), cadeleeuw/lava-partitioning (no license), galagoz/pleiotropyevo (GPL-2.0), hakyimlab/MetaXcan (MIT), gamazonlab/mr-jti (MIT)

Status: code verified, 280 files readable, 19 matches

[22651] doi:10.1038/s41593-024-01801-5 [paper, repository]

Tau filaments are tethered within brain extracellular vesicles in Alzheimer's disease.

Journal: Nature neuroscience

Authors' code: duff-lab-team/AD-EV-characterisation (GPL-3.0)

Status: code verified, 8 files readable, 10 matches

[22652] doi:10.1038/s41597-024-04114-1 [paper, repository]

Chisco: An EEG-based BCI dataset for decoding of imagined speech.

Journal: Scientific data

Authors' code: zhangzihan-is-good/Chisco (MIT)

Status: code verified, 9 files readable, 2 matches

[22653] doi:10.1038/s41598-024-77915-4 [paper, repository]

A biological rhythm in the hypothalamic system links sleep-wake cycles with feeding-fasting cycles.

Journal: Scientific reports

Authors' code: data.mendeley.com/datasets/33cz96rj9b (no license)

Status: code verified

[22654] doi:10.1038/s41598-024-79095-7 [paper, data]

Extrauterine support of pre-term lambs achieves similar transcriptomic profiling to late pre-term lamb brains.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22655] doi:10.1038/s41598-024-80372-8 [paper, repository]

Tensor-valued diffusion MRI detects brain microstructural abnormalities in HIV infected individuals with cognitive impairment.

Journal: Scientific reports

Authors' code: markus-nilsson/md-dmri (other)

Status: code verified, 706 files readable, 4 matches

[22656] doi:10.1038/s42003-024-07253-8 [paper, data]

Modality-specific and modality-general representations of subjective value in frontal cortex.

Journal: Communications biology

Status: code on request, 1 dataset cited

[22657] doi:10.1038/s44220-024-00341-y [paper, repository]

Networks extracted from nonlinear fMRI connectivity exhibit unique spatial variation and enhanced sensitivity to differences between individuals with schizophrenia and controls.

Journal: Nature. Mental health

Authors' code: trendscenter.org/x/datavis (no license), trendscenter/calc_ENLwFC (MIT)

Status: code verified, 3 files readable

[22658] doi:10.1073/pnas.2411151121 [paper, repository]

What can the eye see with melanopsin?

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: supp:PMC11621463/pnas.2411151121.sd03.m (no license), supp:PMC11621463/pnas.2411151121.sd04.m (no license)

Status: code verified, 2 files readable, 4 matches

[22659] doi:10.1073/pnas.2414038121 [paper, data]

Lateral entorhinal cortex afferents reconfigure the activity in piriform cortex circuits.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22660] doi:10.1093/braincomms/fcae421 [paper, repository]

Diffusion tensor imaging along the perivascular space: the bias from crossing fibres.

Journal: Brain communications

Authors' code: markus-nilsson/md-dmri (other)

Status: code verified, 706 files readable, 1 match

[22661] doi:10.1093/psyrad/kkae026 [paper, data]

Identifying brain targets for real-time fMRI neurofeedback in chronic pain: insights from functional neurosurgery.

Journal: Psychoradiology

Status: data only, 1 dataset cited

[22662] doi:10.1159/000542684 [paper, data]

Metastatic Patterns: Insights from Japanese Pathological Autopsy Registry Analysis.

Journal: Oncology

Status: data only, 1 dataset cited

[22663] doi:10.1162/imag_a_00374 [paper, repository]

FONDUE: Robust resolution-invariant denoising of MR images using Nested UNets.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: waadgo/FONDUE (no license)

Status: code verified, 37 files readable, 12 matches

[22664] doi:10.1186/s12993-024-00259-6 [paper, data]

Spectral tuning and after-effects in neural entrainment.

Journal: Behavioral and brain functions : BBF

Status: data only, 1 dataset cited

[22665] doi:10.1186/s40246-024-00659-9 [paper, data]

Genetic heterogeneity in familial forms of genetic generalized epilepsy: from mono- to oligogenism.

Journal: Human genomics

Status: data only, 1 dataset cited

[22666] doi:10.1371/journal.pbio.3002915 [paper, repository]

The human posterior parietal cortices orthogonalize the representation of different streams of information concurrently coded in visual working memory.

Journal: PLoS biology

Authors' code: OSF 8rbkh (no license)

Status: code verified, 24 files readable, 1 match

[22667] doi:10.1371/journal.pone.0302751 [paper, repository]

Comparing the impact of contextual associations and statistical regularities in visual search and attention orienting.

Journal: PloS one

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[22668] doi:10.1371/journal.pone.0309706 [paper, repository]

FDCN-C: A deep learning model based on frequency enhancement, deformable convolution network, and crop module for electroencephalography motor imagery classification.

Journal: PloS one

Authors' code: robintibor/high-gamma-dataset (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[22669] doi:10.2142/biophysico.bppb-v21.0026 [paper, repository]

Electrophysiological analysis of hyperkalemic cardiomyocytes using a multielectrode array system.

Journal: Biophysics and physicobiology

Authors' code: kkito0726/MEA_modules (no license)

Status: code verified, 139 files readable

[22670] doi:10.3390/neurolint16060116 [paper, repository]

Sensitization and Habituation of Hyper-Excitation to Constant Presentation of Pattern-Glare Stimuli.

Journal: Neurology international

Authors' code: tomjefferis/FieldTrip-Pattern-Glare (no license)

Status: code verified, 100 files readable

[22671] doi:10.3390/toxics12120835 [paper]

DEHP-Induced Glioblastoma in Zebrafish Is Associated with Circadian Dysregulation of PER3.

Journal: Toxics

Status: data only

[22672] doi:10.7554/elife.99303 [paper, repository]

Sequential replacement of PSD95 subunits in postsynaptic supercomplexes is slowest in the cortex.

Journal: eLife

Authors' code: Zenodo 8059239 (other-open), Zenodo 7993694 (other-open), Zenodo 7118670 (other-open), s1952312/Super-resolution_NN_analysis (no license), s1952312/Coincidence_Algorithm (no license), s1952312/step-counting-programs (MIT)

Status: code verified, 8 files readable

Wednesday, 20 November 2024 (39 papers)

[22673] doi:10.1002/mrm.30376 [paper, repository]

Regional changes in cerebral perfusion with age when accounting for changes in gray-matter volume.

Journal: Magnetic resonance in medicine

Authors' code: ibme-qubic/oxasl (Apache-2.0), tomfrankkirk/toblerone (no license), physimals/tilda_asl (no license)

Status: code verified, 82 files readable, 9 matches

[22674] doi:10.1016/j.mex.2024.103062 [paper, repository]

Design and evaluation of an open-source block face imaging system for 2D histology to magnetic resonance image registration.

Journal: MethodsX

Authors' code: fuslab-uofu/RecordingGUI (no license), gphoto/gphoto2 (GPL-2.0)

Status: code verified, 46 files readable

[22675] doi:10.1021/acs.jproteome.4c00841 [paper, repository]

Cognitive Impairment Mechanisms in High-Altitude Exposure: Proteomic and Metabolomic Insights.

Journal: Journal of proteome research

Authors' code: langlibaitiaoshuafeidao/High-Altitude-Effects-on-Plains-Brains-Proteomic-Metabolomic-Clues (no license)

Status: code verified, 7 files readable, 1 match

[22676] doi:10.1038/s41467-024-54187-0 [paper, data]

HOX gene expression in the developing human spine.

Journal: Nature communications

Status: data only, 2 datasets cited

[22677] doi:10.1038/s41539-024-00280-4 [paper, repository]

Interbrain neural correlates of self and other integration in joint statistical learning.

Journal: NPJ science of learning

Authors' code: OSF wdctr (no license)

Status: empty repository

[22678] doi:10.1038/s41559-024-02571-w [paper, repository]

Inferring DNA methylation in non-skeletal tissues of ancient specimens.

Journal: Nature ecology & evolution

Authors' code: carmelab.huji.ac.il/software.html (no license)

Status: code verified

[22679] doi:10.1038/s41586-024-08172-8 [paper, repository]

An integrated transcriptomic cell atlas of human neural organoids.

Journal: Nature

Authors' code: linnarsson-lab/developing-human-brain (BSD-2-Clause), theislab/neural_organoid_atlas (no license)

Status: code verified, 10 files readable, 17 matches

[22680] doi:10.1038/s41586-024-08212-3 [paper, repository]

Nonlinear receptive fields evoke redundant retinal coding of natural scenes.

Journal: Nature

Authors' code: dimokaramanlis/subunit_grid_model (GPL-3.0), dimokaramanlis/KiloSortMEA (GPL-2.0), cortex-lab/phy (BSD-3-Clause)

Status: code verified, 358 files readable, 6 matches

[22681] doi:10.1038/s41586-024-08255-6 [paper, repository]

Social state alters vision using three circuit mechanisms in Drosophila.

Journal: Nature

Authors' code: ceschretter/SocialState2024_Code (GPL-3.0)

Status: code verified, 64 files readable, 9 matches

[22682] doi:10.1038/s41588-024-01990-6 [paper, repository]

A temporal cortex cell atlas highlights gene expression dynamics during human brain maturation.

Journal: Nature genetics

Authors' code: Zenodo 13321265 (CC-BY-4.0)

Status: code verified, 29 files readable, 16 matches

[22683] doi:10.1038/s41591-024-03376-x [paper, repository]

An organotypic atlas of human vascular cells.

Journal: Nature medicine

Authors' code: ethz-asl/libpointmatcher (BSD-3-Clause), Teichlab/drug2cell (other), Teichlab/vascular_atlas (no license), NosedaLab/vascular_atlas (no license)

Status: code verified, 363 files readable, 8 matches

[22684] doi:10.1038/s41597-024-04090-6 [paper, repository]

A continuous pursuit dataset for online deep learning-based EEG brain-computer interface.

Journal: Scientific data

Authors' code: bfinl/CPDL (no license)

Status: code verified, 4 files readable, 2 matches

[22685] doi:10.1038/s41598-024-79920-z [paper, repository]

PupilMetrics: a support system for preprocessing of pupillometric data and extraction of outcome measures.

Journal: Scientific reports

Authors' code: JulesGoninRIO/PupilMetrics (GPL-3.0)

Status: code verified, 10 files readable, 1 match

[22686] doi:10.1038/s44321-024-00172-5 [paper, data]

Pathogenic PDE12 variants impair mitochondrial RNA processing causing neonatal mitochondrial disease.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[22687] doi:10.1073/pnas.2409443121 [paper, data]

Differential modulation of pain and associated anxiety by GABAergic neuronal circuits in the lateral habenula.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22688] doi:10.1093/biomethods/bpae086 [paper, repository]

MRI-based whole-brain elastography and volumetric measurements to predict brain age.

Journal: Biology methods & protocols

Authors' code: cesar-claros/MRE_MRI_BrainAge (MIT)

Status: code verified, 38 files readable, 3 matches

[22689] doi:10.1098/rspb.2024.1433 [paper, repository]

The nature of label-induced categories: preverbal infants represent surface features and category symbols.

Journal: Proceedings. Biological sciences

Authors' code: OSF f8xtv (no license), doi:10.6084/m9.figshare.c.7504623 (no license)

Status: code found, still to be checked

[22690] doi:10.1101/gr.279166.124 [paper, repository]

Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations.

Journal: Genome research

Authors' code: edmond.mpg.de/dataset.xhtml (no license), gitlab.gwdg.de/wenyu.zhang/mouse_population_isoform (no license)

Status: code verified, 1 file readable

[22691] doi:10.1101/gr.279170.124 [paper, repository]

Long-read subcellular fractionation and sequencing reveals the translational fate of full-length mRNA isoforms during neuronal differentiation.

Journal: Genome research

Authors' code: ajw2329/cds_insertion (no license)

Status: code verified, 16 files readable

[22692] doi:10.1101/gr.279299.124 [paper]

Independent expansion, selection, and hypervariability of the <i>TBC1D3</i> gene family in humans.

Journal: Genome research

Status: data only

[22693] doi:10.1126/sciadv.adp6301 [paper, repository]

Reduced striatal M4-cholinergic signaling following dopamine loss contributes to parkinsonian and l-DOPA-induced dyskinetic behaviors.

Journal: Science advances

Authors' code: StrowbridgeLab/Toronado-Laser-Scanning (no license)

Status: code verified, 14 files readable, 1 match

[22694] doi:10.1162/imag_a_00370 [paper]

Pharmacological manipulation of neurotransmitter activity induces disparate effects on cerebral blood flow and resting-state fluctuations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[22695] doi:10.1177/10731911241289987 [paper, repository]

Factor Structure and Validity of Composite Scores Resulting From a Computerized Cognitive Test Battery in Healthy Adults and Patients With Primary Brain Tumors.

Journal: Assessment

Authors' code: sanderboelders/FACTOR-ANALYSIS-OF-CNS-VS-IN-PATIENTS-WITH-A-BRAIN-TUMO (no license)

Status: dead link

[22696] doi:10.1186/s12888-024-06291-0 [paper, repository]

Regional homogeneity patterns reveal the genetic and neurobiological basis of State-Trait Anxiety.

Journal: BMC psychiatry

Authors' code: LeonDLotter/ABAnnotate (GPL-3.0)

Status: code verified, 40 files readable, 4 matches

[22697] doi:10.1186/s12915-024-02066-x [paper, data]

Eurasian spruce bark beetle detects lanierone using a highly expressed specialist odorant receptor, present in several functional sensillum types.

Journal: BMC biology

Status: data only, 1 dataset cited

[22698] doi:10.1186/s12967-024-05830-3 [paper, repository]

Co-targeting TMEM16A with a novel monoclonal antibody and EGFR with Cetuximab inhibits the growth and metastasis of esophageal squamous cell carcinoma.

Journal: Journal of translational medicine

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[22699] doi:10.1186/s13041-024-01152-z [paper, data]

A structural analysis of the splice-specific functional impact of the pathogenic familial hemiplegic migraine type 1 S218L mutation on Ca<sub>v</sub>2.1 P/Q-type channel gating.

Journal: Molecular brain

Status: data only, 1 dataset cited

[22700] doi:10.1186/s40478-024-01887-9 [paper, data]

Detection of diagnostic somatic copy number alterations from cerebrospinal fluid cell-free DNA in brain tumor patients.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[22701] doi:10.1523/jneurosci.1173-24.2024 [paper, repository]

A Dynamic Link between Respiration and Arousal.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF ysb3g (no license)

Status: code verified, 28 files readable, 6 matches

[22702] doi:10.3389/fimmu.2024.1443940 [paper, repository]

The FGFR inhibitor Rogaratinib reduces microglia reactivity and synaptic loss in TBI.

Journal: Frontiers in immunology

Authors' code: Rida-Rehman/PROTEAS (GPL-3.0)

Status: empty repository, 2 files readable

[22703] doi:10.3389/fnagi.2024.1486762 [paper, data]

Skeletal muscle proteome differs between young <i>APOE3</i> and <i>APOE4</i> targeted replacement mice in a sex-dependent manner.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[22704] doi:10.3389/fninf.2024.1448161 [paper, repository]

Systems Neuroscience Computing in Python (SyNCoPy): a python package for large-scale analysis of electrophysiological data.

Journal: Frontiers in neuroinformatics

Authors' code: frieslab/syncopy_paper (BSD-3-Clause), esi-neuroscience/acme (BSD-3-Clause), pythonprofilers/memory_profiler (BSD-3-Clause), esi-neuroscience/syncopy (BSD-3-Clause)

Status: code verified, 213 files readable, 16 matches

[22705] doi:10.3389/fnmol.2024.1383963 [paper, data]

Metabolomic profile of cerebral tissue after acoustically-mediated blood-brain barrier opening in a healthy rat model: a focus on the contralateral side.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[22706] doi:10.3389/fped.2024.1471080 [paper, repository]

Fetal gestational age prediction via shape descriptors of cortical development.

Journal: Frontiers in pediatrics

Authors' code: uhlmanngroup/pyshot (GPL-3.0), gift-surg/NiftyMIC (BSD-3-Clause), Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit (BSD-3-Clause), mariadeprez/irtk-simple (other)

Status: code verified, 1,498 files readable

[22707] doi:10.3390/ijms252212459 [paper, data]

Oxidative Stress-Associated Alteration of circRNA and Their ceRNA Network in Differentiating Neuroblasts.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[22708] doi:10.7554/elife.93689 [paper, repository]

Macro-scale patterns in functional connectivity associated with ongoing thought patterns and dispositional traits.

Journal: eLife

Authors' code: samyogita-hardikar/trait_state_lsd (MIT)

Status: code verified, 5 files readable, 1 match

[22709] doi:10.7554/elife.96893 [paper, repository]

Motor neurons are dispensable for the assembly of a sensorimotor circuit for gaze stabilization.

Journal: eLife

Authors' code: OSF 93v6e (no license)

Status: code verified, 11 files readable, 13 matches

[22710] doi:10.7554/elife.97954 [paper, data]

NE contribution to rebooting unconsciousness caused by midazolam.

Journal: eLife

Status: data only, 1 dataset cited

[22711] doi:10.7554/elife.98922 [paper, repository]

Muscarinic receptors mediate motivation via preparatory neural activity in humans.

Journal: eLife

Authors' code: johnPGrogan/muscarinic_motivation_CNV (MIT), Zenodo 5141792 (CC-BY-4.0)

Status: code verified, 134 files readable, 6 matches

Tuesday, 19 November 2024 (47 papers)

[22712] doi:10.1002/alz.14318 [paper, repository]

Plasma p-tau181 and GFAP reflect 7T MR-derived changes in Alzheimer's disease: A longitudinal study of structural and functional MRI and MRS.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: surfer.nmr.mgh.harvard.edu (no license), Zenodo 7181045 (other-open), Zenodo 10091100 (CC-BY-4.0), Zenodo 13318680 (CC-BY-4.0), neuromet/fmri (GPL-3.0), hippieatrophy/r-code_plasma_ptau_gfap_7t_mrchanges (no license), 0rc0/neuromet_mp2rage_pypes (MIT)

Status: code verified, 38 files readable, 15 matches

[22713] doi:10.1002/alz.14366 [paper, data]

Marmosets as model systems for the study of Alzheimer's disease and related dementias: Substantiation of physiological tau 3R and 4R isoform expression and phosphorylation.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[22714] doi:10.1002/jimd.12814 [paper, repository]

Brain morphometry in hepatic Wilson disease patients.

Journal: Journal of inherited metabolic disease

Authors' code: rpomponio/neuroHarmonize (MIT)

Status: code verified, 12 files readable

[22715] doi:10.1002/path.6368 [paper, data]

A dominant negative Kcnd3 F227del mutation in mice causes spinocerebellar ataxia type 22 (SCA22) by impairing ER and Golgi functioning.

Journal: The Journal of pathology

Status: data only, 1 dataset cited

[22716] doi:10.1016/j.celrep.2024.114985 [paper]

Granulins rescue inflammation, lysosome dysfunction, lipofuscin, and neuropathology in a mouse model of progranulin deficiency.

Journal: Cell reports

Status: code on request

[22717] doi:10.1016/j.crneur.2024.100140 [paper, repository]

A psychophysically-tuned computational model of human primary visual cortex produces geometric optical illusions.

Journal: Current research in neurobiology

Authors' code: gist.github.com/879d06244a694d47c4911098aac60656 (no license)

Status: code verified, 5 files readable

[22718] doi:10.1016/j.isci.2024.111425 [paper]

Identification and development of TRPM4 antagonists to counteract neuronal excitotoxicity.

Journal: iScience

Status: code on request

[22719] doi:10.1016/j.isci.2024.111429 [paper]

Sex- and brain region-specific alterations in brain volume in germ-free mice.

Journal: iScience

Status: code on request

[22720] doi:10.1016/j.mex.2024.103068 [paper, data]

Scoping review about well-being in the 'brain migration' studies.

Journal: MethodsX

Status: data only, 1 dataset cited

[22721] doi:10.1016/j.ymthe.2024.11.023 [paper, data]

CRISPR targeting of mmu-miR-21a through a single adeno-associated virus vector prolongs survival of glioblastoma-bearing mice.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 1 dataset cited

[22722] doi:10.1016/j.ynirp.2024.100228 [paper, repository]

Measuring cognitive load in multitasking using mobile fNIRS.

Journal: Neuroimage. Reports

Authors' code: Neuro-Tools (no license)

Status: code verified

[22723] doi:10.1038/s41467-024-54253-7 [paper, repository]

Rapid modulation of striatal cholinergic interneurons and dopamine release by satellite astrocytes.

Journal: Nature communications

Authors' code: craggASAP/astrocytes (MIT), Zenodo 13883128 (CC-BY-4.0)

Status: code verified, 22 files readable

[22724] doi:10.1038/s41467-024-54352-5 [paper, repository]

Proteomic profiling of gliomas unveils immune and metabolism-driven subtypes with implications for anti-nucleotide metabolism therapy.

Journal: Nature communications

Authors' code: proteomecentral.proteomexchange.org/cgi/getdataset (no license), iprox.cn/page/scv017.html (no license), Zenodo 13846294 (CC-BY-4.0)

Status: code verified

[22725] doi:10.1038/s41531-024-00825-9 [paper, repository]

A worldwide study of subcortical shape as a marker for clinical staging in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: enigma.ini.usc.edu/ongoing/enigma-shape-analysis (no license), LAMCIG/ML-for-surface-data (no license)

Status: code verified, 24 files readable

[22726] doi:10.1038/s41597-024-04088-0 [paper, repository]

An fMRI dataset in response to large-scale short natural dynamic facial expression videos.

Journal: Scientific data

Authors' code: Zenodo 13919442 (CC-BY-4.0)

Status: code verified, 117 files readable, 8 matches

[22727] doi:10.1038/s41598-024-75545-4 [paper, repository]

Induction of territorial dominance and subordination behaviors in laboratory mice.

Journal: Scientific reports

Authors' code: git.embl.de/grp-gross/induction-of-territorial-dominance-and-subordination-behaviors-in-laboratory-mice (no license)

Status: code verified

[22728] doi:10.1038/s42003-024-07185-3 [paper, repository]

Vibrational noise disrupts Nezara viridula communication, irrespective of spectral overlap.

Journal: Communications biology

Authors' code: Zenodo 11910334 (CC-BY-4.0)

Status: code verified, 3 files readable, 8 matches

[22729] doi:10.1038/s42003-024-07235-w [paper, repository]

From the brain's encoding of input dynamics to its behavior: neural dynamics shape bias in decision making.

Journal: Communications biology

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[22730] doi:10.1038/s44318-024-00300-4 [paper, data]

Intestinal NUCB2/nesfatin-1 regulates hepatic glucose production via the MC4R-cAMP-GLP-1 pathway.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[22731] doi:10.1073/pnas.2401692121 [paper, data]

IFN-γ-induced Th1-Treg polarization in inflamed brains limits exacerbation of experimental autoimmune encephalomyelitis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22732] doi:10.1073/pnas.2407648121 [paper, data]

CD4<sup>+</sup> T cells drive corneal nerve damage but not epitheliopathy in an acute aqueous-deficient dry eye model.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22733] doi:10.1073/pnas.2412260121 [paper, repository]

Identification of movie encoding neurons enables movie recognition AI.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gengoroo/MovieEncoder_public (no license)

Status: code verified, 24 files readable

[22734] doi:10.1073/pnas.2416614121 [paper, data]

An E2 ubiquitin-conjugating enzyme links diubiquitinated H2B to H3K27M oncohistone function.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22735] doi:10.1093/biomethods/bpae080 [paper, repository]

Deep learning and transfer learning for brain tumor detection and classification.

Journal: Biology methods & protocols

Authors' code: frustom/Brain-Tumor-Classification (no license)

Status: code verified, 6 files readable, 4 matches

[22736] doi:10.1093/braincomms/fcae392 [paper, repository]

Brain age gap, dementia risk factors and cognition in middle age.

Journal: Brain communications

Authors' code: js762/BAG (no license)

Status: code verified, 1 file readable, 1 match

[22737] doi:10.1159/000542696 [paper, data]

The saNeuroGut Initiative: Investigating the Gut Microbiome and Symptoms of Anxiety, Depression, and Posttraumatic Stress.

Journal: Neuroimmunomodulation

Status: data only, 1 dataset cited

[22738] doi:10.1162/imag_a_00366 [paper]

Challenges in the measurement and interpretation of dynamic functional connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[22739] doi:10.1186/s12864-024-11040-4 [paper, repository]

New genomic resources inform transcriptomic responses to heavy metal toxins in the common Eastern bumble bee Bombus impatiens.

Journal: BMC genomics

Authors' code: ISUgenomics/2024_Toth_Bimpatiens (no license)

Status: code verified, 5 files readable, 2 matches

[22740] doi:10.1186/s12866-024-03643-4 [paper]

Brain injury in premature infants may be related to abnormal colonization of early gut microbiome.

Journal: BMC microbiology

Status: data only

[22741] doi:10.1186/s12974-024-03287-1 [paper, data]

Localization of brain neuronal IL-1R1 reveals specific neural circuitries responsive to immune signaling.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[22742] doi:10.1186/s13041-024-01156-9 [paper, data]

NEK7 induces lactylation in Alzheimer's disease to promote pyroptosis in BV-2 cells.

Journal: Molecular brain

Status: data only, 2 datasets cited

[22743] doi:10.1186/s40001-024-02133-7 [paper, data]

MiR-10b-5p attenuates spinal cord injury and alleviates LPS-induced PC12 cells injury by inhibiting TGF-β1 decay and activating TGF-β1/Smad3 pathway through PTBP1.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[22744] doi:10.1371/journal.pbio.3002855 [paper, repository]

Thalamic spindles and Up states coordinate cortical and hippocampal co-ripples in humans.

Journal: PLoS biology

Authors' code: Zenodo 13909725 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[22745] doi:10.1371/journal.pbio.3002909 [paper, repository]

Trajectories of human brain functional connectome maturation across the birth transition.

Journal: PLoS biology

Authors' code: Zenodo 13984128 (CC-BY-4.0), Zenodo 17109779 (CC-BY-4.0), Zenodo 13905953 (CC-BY-4.0), Zenodo 14051966 (CC-BY-4.0)

Status: code verified

[22746] doi:10.1371/journal.pcbi.1012580 [paper, repository]

Reward Bases: A simple mechanism for adaptive acquisition of multiple reward types.

Journal: PLoS computational biology

Authors' code: YuhangSong/reward-bases (AGPL-3.0)

Status: code verified, 21 files readable, 5 matches

[22747] doi:10.1371/journal.pgen.1011461 [paper, data]

Cell non-autonomous signaling through the conserved C. elegans glycoprotein hormone receptor FSHR-1 regulates cholinergic neurotransmission.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[22748] doi:10.1371/journal.pone.0314056 [paper, repository]

Method for detection of cerebral blood flow in neurointensive care using longitudinal arterial spin labeling MRI.

Journal: PloS one

Authors' code: Zenodo 13889385 (CC-BY-4.0), softa96/aslworkflow (MIT)

Status: code verified, 4 files readable, 2 matches

[22749] doi:10.21037/tcr-24-562 [paper]

A novel immune-related gene prognostic signature combining immune cell infiltration and immune checkpoint for glioblastoma patients.

Journal: Translational cancer research

Status: data only

[22750] doi:10.2196/64806 [paper]

Predicting Pain Response to a Remote Musculoskeletal Care Program for Low Back Pain Management: Development of a Prediction Tool.

Journal: JMIR medical informatics

Status: code on request

[22751] doi:10.2463/mrms.mp.2024-0103 [paper, repository]

Image-based Re-evaluation of the JCOG0911 Study Focusing on Tumor Volume and Survival, Disease Progression Diagnosis, and Radiomic Prognostication for Newly Diagnosed Glioblastoma.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Authors' code: eclipsmomo/radiomics_JCOG0911A2 (no license), cran.r-project.org/web/packages (no license)

Status: code verified, 1 file readable

[22752] doi:10.3389/fnbot.2024.1466630 [paper, repository]

Learning-based object's stiffness and shape estimation with confidence level in multi-fingered hand grasping.

Journal: Frontiers in neurorobotics

Authors' code: kyo-kutsuzawa/object_property_estimation_in_robotic_hand (no license)

Status: code verified, 14 files readable, 1 match

[22753] doi:10.3389/fncom.2024.1416838 [paper, data]

A novel method for optimizing epilepsy detection features through multi-domain feature fusion and selection.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[22754] doi:10.3389/fpsyt.2024.1472194 [paper, data]

Single prolonged stress induces behavior and transcriptomic changes in the medial prefrontal cortex to increase susceptibility to anxiety-like behavior in rats.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[22755] doi:10.3390/cells13221910 [paper, data]

Knocking Out TAAR5: A Pathway to Enhanced Neurogenesis and Dopamine Signaling in the Striatum.

Journal: Cells

Status: data only, 1 dataset cited

[22756] doi:10.3758/s13415-024-01239-z [paper, repository]

Worry and rumination elicit similar neural representations: neuroimaging evidence for repetitive negative thinking.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF ax86y (no license)

Status: code verified, 4 files readable, 3 matches

[22757] doi:10.7554/elife.87736 [paper, repository]

Running modulates primate and rodent visual cortex differently.

Journal: eLife

Authors' code: jcbyts/v1locomotion (no license)

Status: code verified, 82 files readable, 6 matches

[22758] doi:10.7717/peerj.18477 [paper, repository]

Common neural mechanisms supporting time judgements in humans and monkeys.

Journal: PeerJ

Authors' code: OSF tm9bz (no license)

Status: code verified, 4 files readable, 5 matches

Monday, 18 November 2024 (32 papers)

[22759] doi:10.1002/advs.202406849 [paper]

Deficiency of FABP7 Triggers Premature Neural Differentiation in Idiopathic Normocephalic Autism Organoids.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[22760] doi:10.1016/j.isci.2024.111413 [paper, data]

BMAL1 upregulates STX17 levels to promote autophagosome-lysosome fusion in hippocampal neurons to ameliorate Alzheimer's disease.

Journal: iScience

Status: code on request, 1 dataset cited

[22761] doi:10.1017/s0033291724001739 [paper, repository]

Functional gradient dysfunction in drug-naïve first-episode schizophrenia and its correlation with specific transcriptional patterns and treatment predictions.

Journal: Psychological medicine

Authors' code: mingruixia/MDD_ConnectomeGradient (no license), SarahMorgan/Morphometric_Similarity_SZ (MIT), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 53 files readable, 7 matches

[22762] doi:10.1017/s0033291724001867 [paper, repository]

Effects of aerobic exercise on hippocampal formation volume in people with schizophrenia - a systematic review and meta-analysis with original data from a randomized-controlled trial.

Journal: Psychological medicine

Authors' code: OSF tr3nx (no license)

Status: empty repository, 5 files readable

[22763] doi:10.1021/acs.jcim.4c01217 [paper, repository]

Transparent Machine Learning Model to Understand Drug Permeability through the Blood-Brain Barrier.

Journal: Journal of chemical information and modeling

Authors' code: gcsosso/BBBP_CLQ (MIT)

Status: code verified, 11 files readable, 3 matches

[22764] doi:10.1038/s41392-024-02020-x [paper, data]

Identifying genetic targets in clinical subtypes of Parkinson's disease for optimizing pharmacological treatment strategies.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[22765] doi:10.1038/s41467-024-53782-5 [paper, repository]

Convergent neural signatures of speech prediction error are a biological marker for spoken word recognition.

Journal: Nature communications

Authors' code: OSF wjd4s (no license)

Status: code verified, 19 files readable, 2 matches

[22766] doi:10.1038/s41598-024-76239-7 [paper, data]

Structural and molecular distinctions of primary and secondary spines in the sea urchin Lytechinus variegatus.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22767] doi:10.1038/s41598-024-76949-y [paper, repository]

BCL3, GBP1, IFI16, and CCR1 as potential brain-derived biomarkers for parietal grey matter lesions in multiple sclerosis.

Journal: Scientific reports

Authors' code: dviraran/xcell (no license)

Status: code verified, 9 files readable, 4 matches

[22768] doi:10.1038/s41598-024-79028-4 [paper, data]

Exploring the uncertainty principle in neural networks through binary classification.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[22769] doi:10.1038/s41598-024-79527-4 [paper, repository]

Blink-induced changes in pupil dynamics are consistent and heritable.

Journal: Scientific reports

Authors' code: humanconnectome.org/study/hcp-young-adult (no license), demiralsb/Blink-Arousal (no license)

Status: code verified, 2 files readable

[22770] doi:10.1038/s41598-024-79856-4 [paper, data]

A low-cost perfusion heating system for slice electrophysiology.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22771] doi:10.1038/s41598-024-80185-9 [paper, data]

Integrated analysis of single-cell RNA sequencing and bulk transcriptome data identifies a pyroptosis-associated diagnostic model for Parkinson's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22772] doi:10.1038/s42003-024-07241-y [paper, data]

Cross-talk between tissues is critical for intergenerational acclimation to environmental change in Acanthochromis polyacanthus.

Journal: Communications biology

Status: data only, 1 dataset cited

[22773] doi:10.1073/pnas.2407457121 [paper, repository]

Frontotemporal network contribution to occluded face processing.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jalaledin/Occlusion-Faces (no license)

Status: code verified, 9 files readable, 4 matches

[22774] doi:10.1080/15384047.2024.2425134 [paper]

<i>DSN1</i> may predict poor prognosis of lower-grade glioma patients and be a potential target for immunotherapy.

Journal: Cancer biology & therapy

Status: data only

[22775] doi:10.1111/ejn.16582 [paper, repository]

GABAergic signalling in the suprachiasmatic nucleus is required for coherent circadian rhythmicity.

Journal: The European journal of neuroscience

Authors' code: bbbales2/neuron_tracker (GPL-3.0)

Status: code verified, 2 files readable

[22776] doi:10.1111/psyp.14725 [paper, repository]

Enhanced neural sensitivity to brief changes of happy over angry facial expressions in preschoolers: A fast periodic visual stimulation study.

Journal: Psychophysiology

Authors' code: OSF 8vuwt (no license)

Status: code verified, 12 files readable, 2 matches

[22777] doi:10.1128/spectrum.01878-24 [paper, data]

Characteristic alterations of gut microbiota and serum metabolites in patients with chronic tinnitus: a multi-omics analysis.

Journal: Microbiology spectrum

Status: code on request, 1 dataset cited

[22778] doi:10.1162/imag_a_00338 [paper, data]

Prior probability biases perceptual choices by modulating the accumulation rate, rather than the baseline, of decision evidence.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[22779] doi:10.1162/imag_a_00371 [paper, repository]

Cortical alterations associated with executive function deficits in youth with a congenital heart defect.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: andy1764/CovBat_Harmonization (no license), asotiras/brainparts (other), cobralab/cobra-nmf (no license), asotiras/brainparts,github.com (no license)

Status: code verified, 32 files readable, 3 matches

[22780] doi:10.1162/imag_a_00373 [paper]

Longitudinal functional brain connectivity maturation in premature newborn infants: Modulatory influence of early music enrichment.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[22781] doi:10.1186/s12916-024-03725-0 [paper, data]

Gain of bipolar disorder-related lncRNA AP1AR-DT in mice induces depressive and anxiety-like behaviors by reducing Negr1-mediated excitatory synaptic transmission.

Journal: BMC medicine

Status: data only, 1 dataset cited

[22782] doi:10.1242/dmm.050870 [paper, data]

Distinct fingerprints of tRNA-derived small non-coding RNA in animal models of neurodegeneration.

Journal: Disease models & mechanisms

Status: data only, 2 datasets cited

[22783] doi:10.1371/journal.pbio.3002843 [paper, data]

Dopamine neurons that inform Drosophila olfactory memory have distinct, acute functions driving attraction and aversion.

Journal: PLoS biology

Status: data only, 1 dataset cited

[22784] doi:10.1371/journal.pcbi.1012601 [paper, data]

Human perception of self-motion and orientation during galvanic vestibular stimulation and physical motion.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[22785] doi:10.3389/fgene.2024.1412442 [paper, data]

Case report: Novel variants cause developmental and epileptic encephalopathy in three unrelated families from Mali.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[22786] doi:10.3390/life14111501 [paper, data]

Decoding Imagined Speech from EEG Data: A Hybrid Deep Learning Approach to Capturing Spatial and Temporal Features.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[22787] doi:10.3390/s24227359 [paper, data]

Prediction and Elimination of Physiological Tremor During Control of Teleoperated Robot Based on Deep Learning.

Journal: Sensors (Basel, Switzerland)

Status: code on request, 1 dataset cited

[22788] doi:10.7554/elife.91722 [paper, data]

Brain state and cortical layer-specific mechanisms underlying perception at threshold.

Journal: eLife

Status: data only, 1 dataset cited

[22789] doi:10.7554/elife.97399 [paper, repository]

Patch-walking, a coordinated multi-pipette patch clamp for efficiently finding synaptic connections.

Journal: eLife

Authors' code: autopatcher.org (no license), mightenyip/Pipette-Cleaning-Software (MIT)

Status: code verified, 2 files readable

[22790] doi:10.7554/elife.99018 [paper, repository]

Electrophysiological dynamics of salience, default mode, and frontoparietal networks during episodic memory formation and recall revealed through multi-experiment iEEG replication.

Journal: eLife

Authors' code: ludovicbellier/InsulaWM (no license), scsnl/Das_NeuroImage_2022 (no license)

Status: code verified, 147 files readable, 6 matches

Sunday, 17 November 2024 (7 papers)

[22791] doi:10.1002/psp4.13265 [paper, repository]

Low-dimensional neural ordinary differential equations accounting for inter-individual variability implemented in Monolix and NONMEM.

Journal: CPT: pharmacometrics & systems pharmacology

Authors' code: supp:PMC11706426/PSP4-14-5-s008.r (no license)

Status: code verified, 1 file readable

[22792] doi:10.1016/j.isci.2024.111410 [paper, repository]

Inhibitory maturation and ocular dominance plasticity in mouse visual cortex require astrocyte CB1 receptors.

Journal: iScience

Authors' code: heimel/inVivoTools (GPL-2.0)

Status: code verified, 1,783 files readable, 2 matches

[22793] doi:10.1016/j.isci.2024.111411 [paper]

Perceptual learning and neural correlates of virtual navigation in subjective cognitive decline: A pilot study.

Journal: iScience

Status: code on request

[22794] doi:10.1038/s41598-024-78791-8 [paper, repository]

Task-irrelevant stimuli reliably boost phasic pupil-linked arousal but do not affect decision formation.

Journal: Scientific reports

Authors' code: fdr.uni-hamburg.de/record/15976 (no license), jhebisch/2024_Hebisch_task-irrelevant-sounds-boost-pupil-no-influence-on-behavior (no license)

Status: code verified, 11 files readable, 4 matches

[22795] doi:10.1101/2024.11.15.623687 [paper, repository]

Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases

Journal: bioRxiv (preprint)

Authors' code: sclitr.readthedocs.io (no license)

Status: dead link

[22796] doi:10.1136/jitc-2024-009522 [paper, data]

Natural killer cells are required for the recruitment of CD8+ T cells and the efficacy of immune checkpoint blockade in melanoma brain metastases.

Journal: Journal for immunotherapy of cancer

Status: data only, 1 dataset cited

[22797] doi:10.3390/e26110988 [paper, data]

A Novel Information Complexity Approach to Score Receiver Operating Characteristic (ROC) Curve Modeling.

Journal: Entropy (Basel, Switzerland)

Status: data only, 2 datasets cited

Saturday, 16 November 2024 (12 papers)

[22798] doi:10.1016/j.dcn.2024.101478 [paper, repository]

Associations between mesolimbic connectivity, and alcohol use from adolescence to adulthood.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 4y8st (no license)

Status: code verified

[22799] doi:10.1016/j.dib.2024.111145 [paper, data]

Experimental datasets on synchronization in simplicial complexes.

Journal: Data in brief

Status: data only, 3 datasets cited

[22800] doi:10.1016/j.jbc.2024.108001 [paper, data]

The Hsc70 system maintains the synaptic SNARE protein SNAP-25 in an assembly-competent state and delays its aggregation.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[22801] doi:10.1016/j.omtn.2024.102392 [paper, data]

DNA aptamers that modulate biological activity of model neurons.

Journal: Molecular therapy. Nucleic acids

Status: data only, 1 dataset cited

[22802] doi:10.1038/s41380-024-02832-x [paper, data]

Transcriptome signatures of the medial prefrontal cortex underlying GABAergic control of resilience to chronic stress exposure.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[22803] doi:10.1038/s41597-024-04112-3 [paper, data]

De novo transcriptome analysis of the Indian squid Uroteuthis duvaucelii (Orbigny, 1848) from the Indian Ocean.

Journal: Scientific data

Status: data only, 1 dataset cited

[22804] doi:10.1038/s41598-024-78823-3 [paper, repository]

NO classifier prediction of anti neuroinflammatory agents using text mining of 3D molecular fingerprints.

Journal: Scientific reports

Authors' code: keiserlab/e3fp (LGPL-3.0), college-of-pharmacy-gachon-university/NO-ClassifierThe (no license), no-classifier.onrender.com (no license)

Status: code verified, 34 files readable

[22805] doi:10.1038/s41598-024-78873-7 [paper, repository]

Starvation-induced metabolic rewiring affects mTORC1 composition in vivo.

Journal: Scientific reports

Authors' code: benfred/venn.js (MIT)

Status: code verified, 11 files readable

[22806] doi:10.1038/s41598-024-79659-7 [paper]

Alterations of gray matter asymmetry in internet gaming disorder.

Journal: Scientific reports

Status: code on request

[22807] doi:10.1038/s41598-024-79910-1 [paper, data]

Lower creatinine-to-cystatin c ratio associated with increased risk of incident amyotrophic lateral sclerosis in the prospective UK biobank cohort.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22808] doi:10.1093/braincomms/fcae413 [paper, repository]

Differential functional change in olfactory bulb and olfactory eloquent areas in Parkinson's disease.

Journal: Brain communications

Authors' code: canlab/canlabcore (GPL-2.0)

Status: code verified, 2,000 files readable, 2 matches

[22809] doi:10.1186/s13024-024-00759-z [paper, data]

Contribution of amyloid deposition from oligodendrocytes in a mouse model of Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

Friday, 15 November 2024 (35 papers)

[22810] doi:10.1002/jmri.29663 [paper, repository]

Seizure Burden and Clinical Risk Factors in Glioma-Related Epilepsy: Insights From MRI Voxel-Based Lesion-Symptom Mapping.

Journal: Journal of magnetic resonance imaging : JMRI

Authors' code: neurolabusc/NiiStat (GPL-2.0)

Status: code verified, 62 files readable, 1 match

[22811] doi:10.1016/j.bvth.2024.100037 [paper, data]

In vivo neuroprotection in ischemic stroke by activated protein C requires β-arrestin 2.

Journal: Blood vessels, thrombosis & hemostasis

Status: data only, 1 dataset cited

[22812] doi:10.1016/j.celrep.2024.114977 [paper, repository]

Sleep deprivation leads to non-adaptive alterations in sleep microarchitecture and amyloid-β accumulation in a murine Alzheimer model.

Journal: Cell reports

Authors' code: mieandersen/sleep_ne_app_ps1 (no license), MannLabs/CKG (MIT)

Status: code verified, 100 files readable, 6 matches

[22813] doi:10.1016/j.heliyon.2024.e40414 [paper, repository]

Differential gene expression analysis supports dysregulation of mitochondrial activity as a new perspective for glioblastoma's aggressiveness.

Journal: Heliyon

Authors' code: ricardoolveira/GBM_ATG_Analysis (no license)

Status: code verified, 2 files readable, 9 matches

[22814] doi:10.1016/j.isci.2024.111388 [paper, repository]

Blocking CCL3-mediated neutrophil recruitment into the brain alleviates immunopathology following severe enterovirus 71 infection.

Journal: iScience

Authors' code: mirbase.org (no license)

Status: code found, still to be checked

[22815] doi:10.1016/j.isci.2024.111390 [paper]

Lattice physics approaches for neural networks.

Journal: iScience

Status: code on request

[22816] doi:10.1038/s41420-024-02241-7 [paper, data]

Identification of PDLIM1 as a glioblastoma stem cell marker driving tumorigenesis and chemoresistance.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[22817] doi:10.1038/s41467-024-53971-2 [paper, repository]

scPair: Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlases.

Journal: Nature communications

Authors' code: Noble-Lab/Polarbear (Apache-2.0), epurdom/cobolt (GPL-3.0), quon-titative-biology/scPair (MIT), Zenodo 12735193 (CC-BY-4.0)

Status: code verified, 45 files readable, 10 matches

[22818] doi:10.1038/s41467-024-54053-z [paper, data]

Membrane lipid nanodomains modulate HCN pacemaker channels in nociceptor DRG neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[22819] doi:10.1038/s41467-024-54257-3 [paper, repository]

A hierarchical active inference model of spatial alternation tasks and the hippocampal-prefrontal circuit.

Journal: Nature communications

Authors' code: toonvdm/bridging-cognitive-maps (no license), Zenodo 13769225 (CC-BY-4.0)

Status: code verified, 80 files readable, 1 match

[22820] doi:10.1038/s41467-024-54346-3 [paper, repository]

Mesoscale neuronal granular trial variability in vivo illustrated by nonlinear recurrent network in silico.

Journal: Nature communications

Authors' code: Cai-yy/Single-trial-variability (no license)

Status: code verified, 7 files readable, 3 matches

[22821] doi:10.1038/s41467-024-54369-w [paper, repository]

Mating reconciles fitness and fecundity by switching diet preference in flies.

Journal: Nature communications

Authors' code: Zenodo 13937970 (CC-BY-4.0), changp22/fcacount (no license)

Status: code verified, 2 files readable

[22822] doi:10.1038/s41467-024-54395-8 [paper]

Noradrenergic alpha-2a receptor stimulation enhances prediction error signaling and updating of attention sets in anterior cingulate cortex and striatum.

Journal: Nature communications

Status: code on request

[22823] doi:10.1038/s41556-024-01544-2 [paper, repository]

FMRP regulates MFF translation to locally direct mitochondrial fission in neurons.

Journal: Nature cell biology

Authors' code: LakGroup/Data_Analysis_Software_Fenton_etal (GPL-3.0)

Status: code verified, 185 files readable, 6 matches

[22824] doi:10.1038/s41598-024-79129-0 [paper, repository]

Peak alpha frequency is linked to visual temporal attention in 6-month-olds.

Journal: Scientific reports

Authors' code: OSF cx7hb (no license)

Status: code verified

[22825] doi:10.1038/s41598-024-79202-8 [paper, repository]

Partial prior transfer learning based on self-attention CNN for EEG decoding in stroke patients.

Journal: Scientific reports

Authors' code: junma-mibci/partial-prior-transfer-learning-pptl- (no license)

Status: code verified, 3 files readable, 3 matches

[22826] doi:10.1038/s42003-024-07182-6 [paper, data]

Mapping cellular stress and lipid dysregulation in Alzheimer-related progressive neurodegeneration using label-free Raman microscopy.

Journal: Communications biology

Status: data only, 1 dataset cited

[22827] doi:10.1038/s42003-024-07187-1 [paper, repository]

Rapid and objective assessment of auditory temporal processing using dynamic amplitude-modulated stimuli.

Journal: Communications biology

Authors' code: sbp894/dAM_multispecies (CC-BY-NC-ND-4.0)

Status: code verified, 25 files readable

[22828] doi:10.1038/s42003-024-07200-7 [paper, data]

Age-dependent cerebral vasodilation induced by volatile anesthetics is mediated by NG2<sup>+</sup> vascular mural cells.

Journal: Communications biology

Status: data only, 1 dataset cited

[22829] doi:10.1073/pnas.2411434121 [paper, data]

Modeling extrahepatic hepatitis E virus infection in induced human primary neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22830] doi:10.1093/braincomms/fcae379 [paper, repository]

Mapping sentence comprehension and syntactic complexity: evidence from 131 stroke survivors.

Journal: Brain communications

Authors' code: OSF 7zekw (no license)

Status: code verified, 5 files readable, 1 match

[22831] doi:10.1126/sciadv.adp3751 [paper, data]

Gene-environment interactions in the influence of maternal education on adolescent neurodevelopment using ABCD study.

Journal: Science advances

Status: data only, 2 datasets cited

[22832] doi:10.1126/sciadv.adp7423 [paper, repository]

Mitochondrial pyruvate transport regulates presynaptic metabolism and neurotransmission.

Journal: Science advances

Authors' code: addgene.org/ghazaleh_ashrafi (no license)

Status: code verified

[22833] doi:10.1142/s0129065724500709 [paper]

Decoding Continuous Tracking Eye Movements from Cortical Spiking Activity.

Journal: International journal of neural systems

Status: code on request

[22834] doi:10.1186/s12987-024-00594-w [paper, repository]

C1-inhibitor to prevent intracerebral hemorrhage-related secondary brain injury.

Journal: Fluids and barriers of the CNS

Authors' code: Zenodo 12697774 (CC-BY-4.0)

Status: empty repository

[22835] doi:10.1186/s13244-024-01848-9 [paper, data]

Constructing and exploring neuroimaging projects: a survey from clinical practice to scientific research.

Journal: Insights into imaging

Status: data only, 1 dataset cited

[22836] doi:10.1242/dev.202645 [paper, data]

SMPD4-mediated sphingolipid metabolism regulates brain and primary cilia development.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[22837] doi:10.2147/bctt.s483757 [paper, data]

Neuron-Specific Gene Family Member 1 is a Potential New Therapeutic Target Associated with Immune Cell Infiltration for Breast Cancer.

Journal: Breast cancer (Dove Medical Press)

Status: data only, 1 dataset cited

[22838] doi:10.3389/fnhum.2024.1442398 [paper, data]

Attention model of EEG signals based on reinforcement learning.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[22839] doi:10.3389/fnins.2024.1468967 [paper, data]

A review of epilepsy detection and prediction methods based on EEG signal processing and deep learning.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[22840] doi:10.3389/fnins.2024.1472747 [paper, repository]

Using Long Short-Term Memory (LSTM) recurrent neural networks to classify unprocessed EEG for seizure prediction.

Journal: Frontiers in neuroscience

Authors' code: JordanChambers/LSTM-seizure-prediction-raw-EEG (no license)

Status: code verified, 12 files readable, 2 matches

[22841] doi:10.3390/brainsci14111146 [paper, data]

High Expression of GABA_A Receptor β Subunit Genes Is Associated with Longer Overall Survival in Medulloblastoma.

Journal: Brain sciences

Status: data only, 1 dataset cited

[22842] doi:10.3390/cells13221887 [paper, data]

HC-HA/PTX3 from Human Amniotic Membrane Induced Differential Gene Expressions in DRG Neurons: Insights into the Modulation of Pain.

Journal: Cells

Status: data only, 1 dataset cited

[22843] doi:10.7554/elife.84359 [paper, data]

Integration of overlapping sequences emerges with consolidation through medial prefrontal cortex neural ensembles and hippocampal-cortical connectivity.

Journal: eLife

Status: data only, 2 datasets cited

[22844] doi:10.7717/peerj.18518 [paper, repository]

Wavelet transform-based mode decomposition for EEG signals under general anesthesia.

Journal: PeerJ

Authors' code: teijisw/EEG_DataSet (no license), Zenodo 13989502 (CC-BY-4.0)

Status: code verified, 2 files readable

Thursday, 14 November 2024 (24 papers, 4 on this page)

[22845] doi:10.1002/acn3.52233 [paper, repository]

Automated assessment of EEG background for neurodevelopmental prediction in neonatal encephalopathy.

Journal: Annals of clinical and translational neurology

Authors' code: babacloud.fi (no license)

Status: code found, still to be checked

[22846] doi:10.1007/s10334-024-01212-4 [paper, repository]

Design of multi-row parallel-transmit coil arrays for enhanced SAR efficiency with deep brain electrodes at 3T: an electromagnetic simulation study.

Journal: Magma (New York, N.Y.)

Authors' code: RflabLondon/MLSOptimisationCodeSAR (no license)

Status: code verified, 3 files readable

[22847] doi:10.1007/s12975-024-01310-4 [paper, data]

Development and Validation of a Flow-Dependent Endothelialized 3D Model of Intracranial Atherosclerotic Disease.

Journal: Translational stroke research

Status: data only, 1 dataset cited

[22848] doi:10.1016/j.heliyon.2024.e40294 [paper, data]

Sex influences on hippocampal kindling-induced seizures in middle-aged mice.

Journal: Heliyon

Status: data only, 1 dataset cited

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