Every paper, by date: page 103

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 103 of 200: 14 November 2024 to 6 November 2024.

Thursday, 14 November 2024 (24 papers, 20 on this page)

[22849] doi:10.1038/s41467-024-54244-8 [paper, repository]

Lateral prefrontal theta oscillations causally drive a computational mechanism underlying conflict expectation and adaptation.

Journal: Nature communications

Authors' code: Zenodo 13919426 (CC-BY-4.0), Zenodo 13923690 (CC-BY-4.0), neurocics/martinez-molina2024 (no license)

Status: code verified, 826 files readable, 12 matches

[22850] doi:10.1038/s41467-024-54323-w [paper, repository]

Face cells encode object parts more than facial configuration of illusory faces.

Journal: Nature communications

Authors' code: OSF z2kra (no license)

Status: code verified, 3 files readable

[22851] doi:10.1038/s41467-024-54347-2 [paper, data]

Histamine-tuned subicular circuit mediates alert-driven accelerated locomotion in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[22852] doi:10.1038/s41597-024-04078-2 [paper, repository]

A transcriptome data set for comparing skin, muscle and dorsal root ganglion between acute and chronic postsurgical pain rats.

Journal: Scientific data

Authors' code: sourceforge.net/skewer (no license), alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[22853] doi:10.1038/s41598-024-78189-6 [paper]

AI tool for predicting MGMT methylation in glioblastoma for clinical decision support in resource limited settings.

Journal: Scientific reports

Status: code on request

[22854] doi:10.1038/s41598-024-78979-y [paper, repository]

Analysis of the impact of deep learning know-how and data in modelling neonatal EEG.

Journal: Scientific reports

Authors' code: CiallC/Neonatal_seizure_detection_dl_algorithm (no license)

Status: code verified, 3 files readable

[22855] doi:10.1038/s41598-024-79309-y [paper, repository]

Using data from cue presentations results in grossly overestimating semantic BCI performance.

Journal: Scientific reports

Authors' code: milan-rybar/semantic-neural-decoding-cue (no license)

Status: code verified, 28 files readable, 7 matches

[22856] doi:10.1038/s42003-024-07230-1 [paper, repository]

Multiscale 3D genome rewiring during PTF1A-mediated somatic cell reprogramming into neural stem cells.

Journal: Communications biology

Authors' code: jsun9003/PTF1A_analysis (no license)

Status: code verified, 7 files readable, 2 matches

[22857] doi:10.1038/s43856-024-00660-2 [paper, data]

Discriminating Parkinson's disease patients from healthy controls using nasal respiratory airflow.

Journal: Communications medicine

Status: data only, 1 dataset cited

[22858] doi:10.1073/pnas.2322687121 [paper, repository]

BIFROST: A method for registering diverse imaging datasets of the <i>Drosophila</i> brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.8pk0p2nx1 (no license), Zenodo 11097259 (MIT), Zenodo 11188658 (MIT), clandininlab/bifrost (MIT)

Status: code verified, 24 files readable, 4 matches

[22859] doi:10.1073/pnas.2410331121 [paper, data]

TARGET-seq: Linking single-cell transcriptomics of human dopaminergic neurons with their target specificity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22860] doi:10.1111/acel.14406 [paper, data]

Aged hippocampal single-cell atlas screening unveils disrupted neuroglial system in postoperative cognitive impairment.

Journal: Aging cell

Status: data only, 1 dataset cited

[22861] doi:10.1162/imag_a_00372 [paper, repository]

VertexWiseR: A package for simplified vertex-wise analyses of whole-brain and hippocampal surfaces in R.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: CogBrainHealthLab/VertexWiseR (GPL-3.0)

Status: code verified, 59 files readable, 14 matches

[22862] doi:10.1186/s12987-024-00593-x [paper, data]

Exploring dysfunctional barrier phenotypes associated with glaucoma using a human pluripotent stem cell-based model of the neurovascular unit.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[22863] doi:10.1371/journal.pcbi.1012473 [paper, repository]

AI-powered simulation-based inference of a genuinely spatial-stochastic gene regulation model of early mouse embryogenesis.

Journal: PLoS computational biology

Authors' code: MARS-FIAS/Article_Modeling_Mouse_ICM (MIT)

Status: code verified, 55 files readable, 6 matches

[22864] doi:10.1523/eneuro.0265-24.2024 [paper, repository]

Transcranial Direct Current Stimulation over the Posterior Parietal Cortex Increases Nontarget Retrieval during Visual Working Memory.

Journal: eNeuro

Authors' code: OSF q84a2 (no license)

Status: code verified, 4 files readable

[22865] doi:10.2147/jir.s488400 [paper, repository]

Exploring and Validating the Mechanism of Ulinastatin in the Treatment of Sepsis-Associated Encephalopathy Based on Transcriptome Sequencing.

Journal: Journal of inflammation research

Authors' code: taiyun/corrplot (other)

Status: code verified, 23 files readable

[22866] doi:10.3389/fnins.2024.1421498 [paper, data]

Dynamic multilayer networks reveal mind wandering.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[22867] doi:10.3390/ijms252212231 [paper, data]

Integrated Transcriptome Profiling and Pan-Cancer Analyses Reveal Oncogenic Networks and Tumor-Immune Modulatory Roles for FABP7 in Brain Cancers.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[22868] doi:10.7554/elife.98759 [paper, repository]

Predictive models for secondary epilepsy in patients with acute ischemic stroke within one year.

Journal: eLife

Authors' code: conanan/lasso-ml (MIT), doi:10.5061/dryad.w0vt4b92c (no license), supp:PMC11563573/elife-98759-code1.zip (no license), supp:PMC11563573/elife-98759-code3.zip (no license), supp:PMC11563573/elife-98759-code4.zip (no license), supp:PMC11563573/elife-98759-code5.zip (no license), Zenodo 14000954 (MIT), Zenodo 14000955 (MIT)

Status: code verified, 22 files readable, 13 matches

Wednesday, 13 November 2024 (40 papers)

[22869] doi:10.1002/alz.14358 [paper, repository]

Cerebrovascular markers of WMH and infarcts in ADNI: A historical perspective and future directions.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: davisidealab/UCD_WMH_Segmentation (MIT)

Status: code verified, 3 files readable

[22870] doi:10.1002/alz.14360 [paper, data]

Large-scale deep proteomic analysis in Alzheimer's disease brain regions across race and ethnicity.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 4 datasets cited

[22871] doi:10.1016/j.csbj.2024.10.040 [paper, repository]

Beyond-local neural information processing in neuronal networks.

Journal: Computational and structural biotechnology journal

Authors' code: DescartesResearch/BrainSimulation (Apache-2.0), biozentrum.uni-wuerzburg.de/bioinfo/computing (no license), Department-of-Bioinformatics/non-local_cortex_simulation (no license)

Status: code verified, 60 files readable, 8 matches

[22872] doi:10.1016/j.csbj.2024.11.013 [paper, repository]

Topological embedding and directional feature importance in ensemble classifiers for multi-class classification.

Journal: Computational and structural biotechnology journal

Authors' code: mcb00/rr-blog (CC0-1.0), EloisaRL/TCGA-proteomics-pipeline (MIT), melkasapi/LAVASET (GPL-3.0)

Status: code verified, 57 files readable, 8 matches

[22873] doi:10.1016/j.isci.2024.111371 [paper]

Compensatory adaptation of parallel motor pathways promotes skilled forelimb recovery after spinal cord injury.

Journal: iScience

Status: code on request

[22874] doi:10.1016/j.isci.2024.111381 [paper, repository]

The dynamics of prion spreading is governed by the interplay between the non-linearities of tissue response and replication kinetics.

Journal: iScience

Authors' code: Zenodo 13897049 (CC-BY-4.0)

Status: code verified, 16 files readable

[22875] doi:10.1021/envhealth.4c00175 [paper]

Disruption of Copper Redox Balance and Dysfunction under <i>In Vivo</i> and <i>In Vitro</i> Alzheimer's Disease Models.

Journal: Environment & health (Washington, D.C.)

Status: data only

[22876] doi:10.1038/s41467-024-53360-9 [paper, repository]

Cognitive reserve against Alzheimer's pathology is linked to brain activity during memory formation.

Journal: Nature communications

Authors' code: znerp/NI_moderation_mv (GPL-2.0)

Status: code verified, 10 files readable, 3 matches

[22877] doi:10.1038/s41467-024-53452-6 [paper, data]

Multi-trait association analysis reveals shared genetic loci between Alzheimer's disease and cardiovascular traits.

Journal: Nature communications

Status: data only, 1 dataset cited

[22878] doi:10.1038/s41467-024-53973-0 [paper, repository]

Charting and probing the activity of ADARs in human development and cell-fate specification.

Journal: Nature communications

Authors' code: SammiLyu/scScreens_ADARs (BSD-3-Clause)

Status: code verified, 49 files readable, 15 matches

[22879] doi:10.1038/s41467-024-54003-9 [paper, repository]

Pharmacogenomic screening identifies and repurposes leucovorin and dyclonine as pro-oligodendrogenic compounds in brain repair.

Journal: Nature communications

Authors' code: ParrasLab/Hure_Parras_2024_paper (GPL-3.0)

Status: code verified, 5 files readable, 3 matches

[22880] doi:10.1038/s41525-024-00431-x [paper, repository]

Common protein-altering variant in GFAP is associated with white matter lesions in the older Japanese population.

Journal: NPJ genomic medicine

Authors' code: bulik/ldsc (GPL-3.0), Geeketics/LocusZooms (no license)

Status: code verified, 40 files readable, 1 match

[22881] doi:10.1038/s41586-024-08169-3 [paper, repository]

Foundation models for fast, label-free detection of glioma infiltration.

Journal: Nature

Authors' code: MLNeurosurg/fastglioma (MIT)

Status: code verified, 31 files readable, 2 matches

[22882] doi:10.1038/s41586-024-08193-3 [paper, repository]

A combinatorial neural code for long-term motor memory.

Journal: Nature

Authors' code: NuoLiLabBCM/KimEtAl2024 (no license)

Status: code verified, 13 files readable, 3 matches

[22883] doi:10.1038/s41598-024-76537-0 [paper, repository]

Towards faster and robust solution for dynamic LR and QR factorization.

Journal: Scientific reports

Authors' code: Alana2a3/AREND-Code-Implementation (GPL-3.0)

Status: code verified, 2 files readable

[22884] doi:10.1038/s41598-024-77523-2 [paper, data]

Brain tumor diagnosis in MRI scans images using Residual/Shuffle Network optimized by augmented Falcon Finch optimization.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22885] doi:10.1038/s41598-024-77693-z [paper, data]

Differential neural activity predicts the long-term stability of the effects of positive and negative expectations on pain.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22886] doi:10.1038/s42003-024-07198-y [paper]

Widespread co-release of glutamate and GABA throughout the mouse brain.

Journal: Communications biology

Status: code on request

[22887] doi:10.1038/s44172-024-00314-0 [paper]

Robust neural networks using stochastic resonance neurons.

Journal: Communications engineering

Status: code on request

[22888] doi:10.1073/pnas.2406061121 [paper, repository]

Neural dynamics of shifting attention between perception and working-memory contents.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 5cw7u (no license)

Status: code verified, 6 files readable

[22889] doi:10.1073/pnas.2408505121 [paper, repository]

Arkypallidal neurons in the external globus pallidus can mediate inhibitory control by altering competition in the striatum.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: CoAxLab/CBGTPy (no license), giossic/arky-stopsignal (MIT)

Status: code verified, 43 files readable, 3 matches

[22890] doi:10.1080/15592294.2024.2426952 [paper, data]

Sex and tissue-specificity of piRNA regulation in adult mice following perinatal lead (Pb) exposure.

Journal: Epigenetics

Status: data only, 1 dataset cited

[22891] doi:10.1093/braincomms/fcae407 [paper, repository]

Concussion leads to opposing sensorimotor effects of habituation deficit and fatigue in zebrafish larvae.

Journal: Brain communications

Authors' code: data.mendeley.com/datasets/7njhhgwtz9 (no license)

Status: code verified

[22892] doi:10.1093/braincomms/fcae409 [paper, repository]

Motor learning is modulated by dopamine availability in the sensorimotor putamen.

Journal: Brain communications

Authors' code: ChrisF48/MotorLearningPutamen (BSD-2-Clause)

Status: code verified, 46 files readable, 2 matches

[22893] doi:10.1098/rsos.241042 [paper, repository]

Prey detection by a stepwise visual template matching mechanism.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7510442 (no license), Zenodo 12629339 (MIT)

Status: code verified, 3 files readable, 1 match

[22894] doi:10.1186/s13040-024-00400-1 [paper, repository]

Deciphering the tissue-specific functional effect of Alzheimer risk SNPs with deep genome annotation.

Journal: BioData mining

Authors' code: PradoVarathan/Multi_Specto (no license)

Status: code verified, 7 files readable, 1 match

[22895] doi:10.12688/f1000research.153731.1 [paper, repository]

Analysis of Circulating Plasma MicroRNA Profile in Low-Grade and High-Grade Glioma - A Cross-Sectional Study.

Journal: F1000Research

Authors' code: illumina (no license)

Status: code verified

[22896] doi:10.1371/journal.pbio.3002910 [paper, repository]

Spatiotemporal integration of contextual and sensory information within the cortical hierarchy in human pain experience.

Journal: PLoS biology

Authors' code: figshare 25040951 (CC-BY-4.0)

Status: code verified

[22897] doi:10.1371/journal.pone.0288830 [paper, data]

Modulation of neural networks and symptom correlated in fibromyalgia: A randomized double-blind multi-group explanatory clinical trial of home-based transcranial direct current stimulation.

Journal: PloS one

Status: data only, 1 dataset cited

[22898] doi:10.26508/lsa.202402922 [paper, data]

Pathogenic <i>LRRK2</i> mutations cause loss of primary cilia and Neurturin in striatal parvalbumin interneurons.

Journal: Life science alliance

Status: data only, 2 datasets cited

[22899] doi:10.26508/lsa.202402969 [paper, data]

KAT6B is required for histone 3 lysine 9 acetylation and SOX gene expression in the developing brain.

Journal: Life science alliance

Status: data only, 1 dataset cited

[22900] doi:10.32604/or.2024.051569 [paper, data]

hsa-miR-181a-5p inhibits glioblastoma development via the MAPK pathway: <i>in-silico</i> and <i>in-vitro</i> study.

Journal: Oncology research

Status: data only, 1 dataset cited

[22901] doi:10.3389/fncom.2024.1452457 [paper, repository]

Sex differences in brain MRI using deep learning toward fairer healthcare outcomes.

Journal: Frontiers in computational neuroscience

Authors' code: mahsadibaji/sex-differences-brain-dl (no license)

Status: code verified, 6 files readable, 2 matches

[22902] doi:10.3389/fnhum.2024.1495272 [paper, repository]

Beta-gamma phase-amplitude coupling of scalp electroencephalography during walking preparation in Parkinson's disease differs depending on the freezing of gait.

Journal: Frontiers in human neuroscience

Authors' code: EtienneCmb/tensorpac (BSD-3-Clause)

Status: code verified, 64 files readable, 2 matches

[22903] doi:10.3389/fnhum.2024.1497034 [paper, data]

Hyperscanning: from inter-brain coupling to causality.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[22904] doi:10.3389/fnins.2024.1402646 [paper, data]

Synchronized stepwise control of firing and learning thresholds in a spiking randomly connected neural network toward hardware implementation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[22905] doi:10.3390/biomedicines12112597 [paper, repository]

Methods for Identifying Epilepsy Surgery Targets Using Invasive EEG: A Systematic Review.

Journal: Biomedicines

Authors' code: ivkarla/epirev (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[22906] doi:10.3390/biomimetics9110695 [paper, repository]

EchoPT: A Pretrained Transformer Architecture That Predicts 2D In-Air Sonar Images for Mobile Robotics.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: Zenodo 11191954 (no license)

Status: code verified

[22907] doi:10.3390/diagnostics14222541 [paper, data]

Detection of Brain-Derived Cell-Free DNA in Plasma.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[22908] doi:10.7554/elife.92820 [paper, repository]

Hemispheric divergence of interoceptive processing across psychiatric disorders.

Journal: eLife

Authors' code: OSF 6nxa3 (no license)

Status: code verified, 8 files readable, 10 matches

Tuesday, 12 November 2024 (32 papers)

[22909] doi:10.1016/j.dcn.2024.101476 [paper, repository]

Associations between parental psychopathology and youth functional emotion regulation brain networks.

Journal: Developmental cognitive neuroscience

Authors' code: collection3165.readthedocs.io (no license)

Status: dead link

[22910] doi:10.1016/j.jhepr.2024.101245 [paper, data]

Hepatocellular carcinoma hosts cholinergic neural cells and tumoral hepatocytes harboring targetable muscarinic receptors.

Journal: JHEP reports : innovation in hepatology

Status: data only, 1 dataset cited

[22911] doi:10.1038/s41386-024-02018-7 [paper, data]

A sleepy cannabis constituent: cannabinol and its active metabolite influence sleep architecture in rats.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[22912] doi:10.1038/s41467-024-53642-2 [paper, repository]

Depolarization induces calcium-dependent BMP4 release from mouse embryonic palate mesenchymal cells.

Journal: Nature communications

Authors' code: yunusozekin/WT_E13.5_AntPalate_scRNAseq_Ozekin (no license), Zenodo 13887375 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[22913] doi:10.1038/s41467-024-54007-5 [paper, repository]

Complement and microglia activation mediate stress-induced synapse loss in layer 2/3 of the medial prefrontal cortex in male mice.

Journal: Nature communications

Authors' code: Zenodo 13732420 (CC-BY-4.0), gekmingsia/tillmon-et-al-microglia-scrnaseq-2024 (no license)

Status: code verified, 16 files readable, 4 matches

[22914] doi:10.1038/s41592-024-02500-6 [paper, repository]

Analysis of behavioral flow resolves latent phenotypes.

Journal: Nature methods

Authors' code: ETHZ-INS/BehaviorFlow (GPL-3.0)

Status: code verified, 52 files readable, 14 matches

[22915] doi:10.1038/s41597-024-04051-z [paper, repository]

Pyrfume: A window to the world's olfactory data.

Journal: Scientific data

Authors' code: pyrfume/pyrfume-data (MIT), pyrfume.org (no license), pyrfume (no license)

Status: code verified, 80 files readable, 2 matches

[22916] doi:10.1038/s41597-024-04060-y [paper, repository]

Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization.

Journal: Scientific data

Authors' code: Neural-Systems-at-UIO/allen2quicknii (no license), neural-systems-at-uio/3d-point-clouds (MIT), Neural-Systems-at-UIO/xyz-converter (CC-BY-4.0)

Status: code verified, 30 files readable, 4 matches

[22917] doi:10.1038/s41598-024-78054-6 [paper, repository]

Transcriptomic profiling of backfat and muscle in Lijiang pigs with divergent body size across growth stages.

Journal: Scientific reports

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

[22918] doi:10.1038/s41598-024-79259-5 [paper, repository]

Brain imaging and machine learning reveal uncoupled functional network for contextual threat memory in long sepsis.

Journal: Scientific reports

Authors' code: HuertaLab/20240730_beta_PET (Apache-2.0), Zenodo 13136023 (CC-BY-4.0)

Status: code verified, 41 files readable, 3 matches

[22919] doi:10.1038/s41684-024-01475-3 [paper, data]

Development and evaluation of an autism pig model.

Journal: Lab animal

Status: data only, 1 dataset cited

[22920] doi:10.1038/s42003-024-07061-0 [paper, repository]

Personality traits vary in their association with brain activity across situations.

Journal: Communications biology

Authors' code: samyogita-hardikar/hcp-task-trait (no license)

Status: code verified, 19 files readable, 2 matches

[22921] doi:10.1038/s42003-024-07197-z [paper, repository]

Motor learning promotes regionally-specific spindle-slow wave coupled cerebral memory reactivation.

Journal: Communications biology

Authors' code: stuartfogel/Period-Amplitude-Analysis (GPL-3.0), stuartfogel/detect_spindles (GPL-3.0), translationalneuromodeling.org/tapas (no license), stuartfogel (no license)

Status: code verified, 23 files readable, 3 matches

[22922] doi:10.1038/s42003-024-07210-5 [paper, repository]

Neural reward system reflects individual value comparison strategy in cost-benefit decisions.

Journal: Communications biology

Authors' code: OSF krxe4 (no license)

Status: code verified, 5 files readable

[22923] doi:10.1073/pnas.2410789121 [paper, repository]

Hierarchical behavior control by a single class of interneurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Wenlab/code-for-SAA-dataprocessing (MIT), Wenlab/code-for-SAA-data-processing (no license)

Status: code verified, 16 files readable

[22924] doi:10.1093/braincomms/fcae353 [paper, repository]

Compensatory mechanisms amidst demyelinating disorders: insights into cognitive preservation.

Journal: Brain communications

Authors' code: MabbottLab/MEGneto (GPL-3.0)

Status: code verified, 396 files readable, 9 matches

[22925] doi:10.1093/pnasnexus/pgae496 [paper, repository]

Choroid plexus extracellular vesicle transport of blood-borne insulin-like growth factor 1 to the hippocampus of the immature brain.

Journal: PNAS nexus

Authors' code: martinry/ProteoMill (GPL-3.0)

Status: code verified, 31 files readable

[22926] doi:10.1101/2024.11.11.623020 [paper, repository]

Inter-individual gene expression variability implies stable regulation of brain-biased genes across organs in three ray-finned fishes

Journal: bioRxiv (preprint)

Authors' code: mrrlab/fish-variability-across-organs (MIT), Zenodo 14063787 (CC-BY-4.0)

Status: code verified, 45 files readable, 20 matches

[22927] doi:10.1113/jp286281 [paper, repository]

Acute introduction of monomeric or multimeric α-synuclein induces distinct impacts on synaptic vesicle trafficking at lamprey giant synapses.

Journal: The Journal of physiology

Authors' code: jaqulinwallace/MBL-Morgan-Lab-Analysis (no license)

Status: code verified, 5 files readable, 2 matches

[22928] doi:10.1162/imag_a_00347 [paper, repository]

Processing, evaluating, and understanding FMRI data with afni_proc.py.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: afni/apaper_afni_proc (no license), hub.docker.com/r/afni (no license)

Status: code verified, 1 file readable

[22929] doi:10.1162/imag_a_00353 [paper, data]

Diffusion MRI with Machine Learning.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[22930] doi:10.1162/imag_a_00360 [paper, repository]

Functional localization of the human auditory and visual thalamus using a thalamic localizer functional magnetic resonance imaging task.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: neurobs.com/ex_files/expt_view (no license), CNaP-Lab/MCOT (GPL-3.0), CNaP-Lab/Sensory-Thalamic-Localizer (GPL-3.0)

Status: code verified, 4,000 files readable, 13 matches

[22931] doi:10.1186/s12911-024-02720-y [paper]

Development of a cerebellar ataxia diagnosis model using conditional GAN-based synthetic data generation for visuomotor adaptation task.

Journal: BMC medical informatics and decision making

Status: code on request

[22932] doi:10.1186/s12920-024-02040-0 [paper, data]

Comparative meta-analysis of transcriptomic studies in spinal muscular atrophy: comparison between tissues and mouse models.

Journal: BMC medical genomics

Status: data only, 7 datasets cited

[22933] doi:10.1242/bio.060421 [paper, repository]

Shared and unique consequences of Joubert Syndrome gene dysfunction on the zebrafish central nervous system.

Journal: Biology open

Authors' code: skollmor/dspace (AGPL-3.0)

Status: code verified, 197 files readable

[22934] doi:10.1371/journal.pbio.3002902 [paper, repository]

Evolutionarily conserved brainstem architecture enables gravity-guided vertical navigation.

Journal: PLoS biology

Authors' code: OSF aer9f (no license)

Status: code verified, 1 file readable

[22935] doi:10.1371/journal.pcbi.1012114 [paper, repository]

An electrodiffusive network model with multicompartmental neurons and synaptic connections.

Journal: PLoS computational biology

Authors' code: martejulie/electrodiffusive-network-model (MIT)

Status: code verified, 10 files readable, 5 matches

[22936] doi:10.3389/fnins.2024.1400412 [paper, repository]

Deriving comprehensive literature trends on multi-omics analysis studies in autism spectrum disorder using literature mining pipeline.

Journal: Frontiers in neuroscience

Authors' code: pslomics/ASD_multiomics_analysis (no license)

Status: code verified, 2 files readable, 8 matches

[22937] doi:10.3389/fnins.2024.1457774 [paper, repository]

Real-time multicompartment Hodgkin-Huxley neuron emulation on SoC FPGA.

Journal: Frontiers in neuroscience

Authors' code: Ceramic-Blue-Tim/bioemum (GPL-3.0)

Status: code verified, 77 files readable, 4 matches

[22938] doi:10.3389/fnins.2024.1488193 [paper]

A three-classification model for identifying migraine with right-to-left shunt using lateralization of functional connectivity and brain network topology: a resting-state fMRI study.

Journal: Frontiers in neuroscience

Status: code on request

[22939] doi:10.3390/diagnostics14222525 [paper, repository]

Enhancing Epilepsy Seizure Detection Through Advanced EEG Preprocessing Techniques and Peak-to-Peak Amplitude Fluctuation Analysis.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: journals.kau.edu.sa/index.php/jengsci (no license)

Status: code found, still to be checked

[22940] doi:10.7554/elife.97696 [paper, repository]

Isoleucine gate blocks K&lt;sup&gt;+&lt;/sup&gt; conduction in C-type inactivation.

Journal: eLife

Authors' code: Zenodo 10938041 (CC-BY-4.0)

Status: code verified

Monday, 11 November 2024 (33 papers)

[22941] doi:10.1016/j.eclinm.2024.102919 [paper, repository]

Detection of neurologic changes in critically ill infants using deep learning on video data: a retrospective single center cohort study.

Journal: EClinicalMedicine

Authors' code: Agleason1/Neonatal-Pose-AI--Sedation-and-Cerebral-Dysfunction (no license)

Status: code verified, 2 files readable, 2 matches

[22942] doi:10.1021/acsmedchemlett.4c00241 [paper, data]

Asymmetric Synthesis and Biological Evaluation of Both Enantiomers of 5- and 6-Boronotryptophan as Potential Boron Delivery Agents for Boron Neutron Capture Therapy.

Journal: ACS medicinal chemistry letters

Status: data only, 1 dataset cited

[22943] doi:10.1038/s41377-024-01649-1 [paper, repository]

Bessel beam optical coherence microscopy enables multiscale assessment of cerebrovascular network morphology and function.

Journal: Light, science & applications

Authors' code: bwittmann/octa-unet (no license), huggingface.co/bwittmann/octa-unet (no license)

Status: code verified, 4 files readable, 1 match

[22944] doi:10.1038/s41467-024-53505-w [paper, data]

Revealing single-neuron and network-activity interaction by combining high-density microelectrode array and optogenetics.

Journal: Nature communications

Status: data only, 1 dataset cited

[22945] doi:10.1038/s41467-024-53547-0 [paper, repository]

ASC specks as a single-molecule fluid biomarker of inflammation in neurodegenerative diseases.

Journal: Nature communications

Authors' code: LobanovaEG-LobanovSV/PCAR (CC-BY-4.0), ypz858/super-res-code (no license)

Status: code verified, 2 files readable

[22946] doi:10.1038/s41592-024-02521-1 [paper, data]

ONIX: a unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior.

Journal: Nature methods

Status: data only, 2 datasets cited

[22947] doi:10.1038/s41593-024-01791-4 [paper, repository]

Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer's disease.

Journal: Nature neuroscience

Authors' code: mindds/ad-progression-study (no license), Zenodo 13315411 (CC-BY-4.0)

Status: code verified, 45 files readable, 24 matches

[22948] doi:10.1038/s41597-024-03761-8 [paper, repository]

The Brain Image Library: A Community-Contributed Microscopy Resource for Neuroscientists.

Journal: Scientific data

Authors' code: brain-image-library/workshops (no license), brain-image-library/napari-bil-data-viewer (BSD-3-Clause), ondemand.bil.psc.edu (no license), youtube.com/channel/ucguujxxaeuemozzuiagmtuq (no license), insightsoftwareconsortium/getyourbraintogether (no license), brain-image-library (no license), CBI-PITT (no license)

Status: code verified, 49 files readable, 2 matches

[22949] doi:10.1038/s41598-024-78181-0 [paper]

Identification of novel risk genes for Alzheimer's disease by integrating genetics from hippocampus.

Journal: Scientific reports

Status: data only

[22950] doi:10.1038/s41598-024-79139-y [paper, repository]

Exploration of an intrinsically explainable self-attention based model for prototype generation on single-channel EEG sleep stage classification.

Journal: Scientific reports

Authors' code: BrentonAD/EEG-SESM (no license)

Status: code verified, 59 files readable, 5 matches

[22951] doi:10.1038/s41598-024-79391-2 [paper, data]

Discovery of key molecular signatures for diagnosis and therapies of glioblastoma by combining supervised and unsupervised learning approaches.

Journal: Scientific reports

Status: data only, 1 dataset cited

[22952] doi:10.1038/s42003-024-07186-2 [paper, repository]

Rectified activity-dependent population plasticity implicates cortical adaptation for memory and cognitive functions.

Journal: Communications biology

Authors' code: myqnapcloud.cn/smartshare/74he137i7p84o28qu6x85y70_e795j94li22n21830vs3878223dbhgig (no license)

Status: code verified

[22953] doi:10.1038/s44271-024-00157-7 [paper, repository]

Psychoacoustic and Archeoacoustic nature of ancient Aztec skull whistles.

Journal: Communications psychology

Authors' code: caneuro/skullwhistle (CC-BY-4.0), theunissenlab/soundsig (MIT), rsagroup/rsatoolbox_matlab (no license), sthda.com/english/articles (no license), sites.google.com/site/tdtdecodingtoolbox (no license)

Status: code verified, 238 files readable, 13 matches

[22954] doi:10.1038/s44318-024-00299-8 [paper, data]

METTL3/MYCN cooperation drives neural crest differentiation and provides therapeutic vulnerability in neuroblastoma.

Journal: The EMBO journal

Status: code on request, 1 dataset cited

[22955] doi:10.1038/s44319-024-00309-0 [paper, data]

Experience-driven development of decision-related representations in the auditory cortex.

Journal: EMBO reports

Status: data only, 1 dataset cited

[22956] doi:10.1038/s44319-024-00317-0 [paper, data]

Palmitoylation by ZDHHC4 inhibits TRPV1-mediated nociception.

Journal: EMBO reports

Status: data only, 1 dataset cited

[22957] doi:10.1073/pnas.2404213121 [paper, data]

Prolonged exertion of self-control causes increased sleep-like frontal brain activity and changes in aggressivity and punishment.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[22958] doi:10.1073/pnas.2413409121 [paper, repository]

Functional alterations of the magnocellular subdivision of the visual sensory thalamus in autism.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF w7pr4 (no license)

Status: code verified

[22959] doi:10.1093/nop/npae113 [paper]

Disparities in end-of-life care and place of death in people with malignant brain tumors-A Swedish registry study.

Journal: Neuro-oncology practice

Status: code on request

[22960] doi:10.1128/mra.00455-24 [paper, data]

<i>Streptococcus agalactiae</i> strain COH1 transcriptome in association with stem cell-derived brain-like endothelial cells.

Journal: Microbiology resource announcements

Status: data only, 1 dataset cited

[22961] doi:10.1186/s13073-024-01404-6 [paper, repository]

Identification of pathological pathways centered on circRNA dysregulation in association with irreversible progression of Alzheimer's disease.

Journal: Genome medicine

Authors' code: YaoLabEmory/ADcircRNA (no license)

Status: code verified, 4 files readable, 2 matches

[22962] doi:10.1186/s13293-024-00668-2 [paper]

Sex differences in the human brain related to visual motion perception.

Journal: Biology of sex differences

Status: code on request

[22963] doi:10.1371/journal.pcbi.1012019 [paper, repository]

Teaching deep networks to see shape: Lessons from a simplified visual world.

Journal: PLoS computational biology

Authors' code: cJarvers/shapelearningtheory (MIT), Zenodo 10850391 (CC-BY-4.0)

Status: code verified, 92 files readable, 15 matches

[22964] doi:10.1371/journal.pcbi.1012524 [paper, repository]

Kernel machine tests of association using extrinsic and intrinsic cluster evaluation metrics.

Journal: PLoS computational biology

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

[22965] doi:10.1371/journal.pcbi.1012537 [paper, repository]

Deep-learning models reveal how context and listener attention shape electrophysiological correlates of speech-to-language transformation.

Journal: PLoS computational biology

Authors' code: OSF 7vzqb (no license)

Status: code verified, 36 files readable, 2 matches

[22966] doi:10.1371/journal.pone.0303002 [paper, repository]

Postoperative Karnofsky performance status prediction in patients with IDH wild-type glioblastoma: A multimodal approach integrating clinical and deep imaging features.

Journal: PloS one

Authors' code: TomokiSasagasako/GBM_KPS_prediction (MIT)

Status: code verified, 12 files readable, 5 matches

[22967] doi:10.1371/journal.pone.0313132 [paper, data]

Explainable machine learning for early prediction of sepsis in traumatic brain injury: A discovery and validation study.

Journal: PloS one

Status: data only, 1 dataset cited

[22968] doi:10.1371/journal.pone.0313516 [paper, data]

Grade prediction of lesions in cerebral white matter using a convolutional neural network.

Journal: PloS one

Status: data only, 1 dataset cited

[22969] doi:10.3389/fphys.2024.1357123 [paper, repository]

SRPNet: stroke risk prediction based on two-level feature selection and deep fusion network.

Journal: Frontiers in physiology

Authors' code: zhangdaoliang/SRPNet (MIT)

Status: code verified, 8 files readable, 7 matches

[22970] doi:10.3390/biom14111431 [paper, repository]

Differential Lipid Signatures of Lumbar and Cisternal Cerebrospinal Fluid.

Journal: Biomolecules

Authors' code: Sorennorge/MacAulayLab-Cisternal-Lumbar-Metabolomics (no license)

Status: code verified, 15 files readable, 4 matches

[22971] doi:10.3390/cells13221867 [paper, data]

Small and Long Non-Coding RNA Analysis for Human Trophoblast-Derived Extracellular Vesicles and Their Effect on the Transcriptome Profile of Human Neural Progenitor Cells.

Journal: Cells

Status: data only, 1 dataset cited

[22972] doi:10.7554/elife.87962 [paper, repository]

A distributed brain response predicting the facial expression of acute nociceptive pain.

Journal: eLife

Authors' code: canlab/Neuroimaging_Pattern_Masks (GPL-3.0), me-pic/picard_feps_2023 (Apache-2.0), mpcoll/coll_painvalue_2021 (no license)

Status: code verified, 388 files readable, 10 matches

[22973] doi:10.7554/elife.95764 [paper, repository]

Shortcutting from self-motion signals reveals a cognitive map in mice.

Journal: eLife

Authors' code: neuro-physics/mouse-cogmap (MIT)

Status: code verified, 194 files readable, 4 matches

Sunday, 10 November 2024 (5 papers)

[22974] doi:10.1038/s41467-024-53228-y [paper]

Mechanical power is maximized during contractile ring-like formation in a biomimetic dividing cell model.

Journal: Nature communications

Status: code on request

[22975] doi:10.1038/s41598-024-78304-7 [paper, repository]

A deep learning model of dorsal and ventral visual streams for DVSD.

Journal: Scientific reports

Authors' code: VeDo-Net/VeDo-Net (no license)

Status: code verified, 14 files readable, 1 match

[22976] doi:10.1038/s41598-024-79344-9 [paper, repository]

Glioma subtype prediction based on radiomics of tumor and peritumoral edema under automatic segmentation.

Journal: Scientific reports

Authors' code: FETS-AI/Front-End (other)

Status: code verified, 717 files readable, 6 matches

[22977] doi:10.1038/s42003-024-07215-0 [paper, repository]

Protective role of aconitate decarboxylase 1 in neuroinflammation-induced dysfunctions of the paraventricular thalamus and sleepiness.

Journal: Communications biology

Authors' code: Jianjun1992/Jianjun (no license)

Status: code verified, 7 files readable, 1 match

[22978] doi:10.1177/07067437241293981 [paper, repository]

Brain Age Gap as a Predictor of Early Treatment Response and Functional Outcomes in First-Episode Schizophrenia: A Longitudinal Study: L'écart d'âge cérébral comme prédicteur de la réponse en début de traitement et des résultats fonctionnels dans un premier épisode de schizophrénie : une étude longitudinale.

Journal: Canadian journal of psychiatry. Revue canadienne de psychiatrie

Authors' code: tobias-kaufmann/brainage (no license)

Status: empty repository, 1 file readable

Saturday, 9 November 2024 (12 papers)

[22979] doi:10.1016/j.bbih.2024.100896 [paper, data]

EBNA-1 and VCA-p18 immunoglobulin markers link Epstein-Barr virus immune response and brain's myelin content to fatigue in a community-dwelling cohort.

Journal: Brain, behavior, & immunity - health

Status: data only, 2 datasets cited

[22980] doi:10.1038/s41380-024-02810-3 [paper, data]

Gene expression profiles of endothelium, microglia and oligodendrocytes in hippocampus of post-stroke depression rat at single cell resolution.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[22981] doi:10.1038/s41419-024-07201-8 [paper, data]

PIGK defects induce apoptosis in Purkinje cells and acceleration of neuroectodermal differentiation.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[22982] doi:10.1038/s41467-024-53729-w [paper, repository]

Multiplexed expansion revealing for imaging multiprotein nanostructures in healthy and diseased brain.

Journal: Nature communications

Authors' code: schroeme/multi-ExR (MIT), dgoodwin208/ExSeqProcessing (MIT), donglaiw/exm-toolbox (no license), Zenodo 13646611 (CC-BY-4.0), Zenodo 13750923 (CC-BY-4.0)

Status: code verified, 897 files readable, 18 matches

[22983] doi:10.1038/s41467-024-53954-3 [paper, repository]

Reconstructing the regulatory programs underlying the phenotypic plasticity of neural cancers.

Journal: Nature communications

Authors' code: scmethods/scregclust (GPL-3.0), cran.r-project.org/package=rcpp (no license), Zenodo 13940499 (CC-BY-4.0)

Status: code verified, 75 files readable, 9 matches

[22984] doi:10.1038/s41467-024-53977-w [paper, repository]

Parabrachial Calca neurons mediate second-order conditioning.

Journal: Nature communications

Authors' code: Zenodo 10725342 (CC-BY-4.0), sekun519/cgrp_pbn_ca2-imaging (no license)

Status: code verified, 3 files readable, 1 match

[22985] doi:10.1038/s41597-024-04010-8 [paper, repository]

Neural Dynamics of Creative Movements During the Rehearsal and Performance of "LiveWire".

Journal: Scientific data

Authors' code: doi:10.6084/m9.figshare.c.6274752 (no license)

Status: code found, still to be checked

[22986] doi:10.1038/s41598-024-78465-5 [paper, repository]

Striatal dopamine gene network moderates the effect of early adversity on the risk for adult psychiatric and cardiometabolic comorbidity.

Journal: Scientific reports

Authors' code: MeaneyLab/PRSoS (no license)

Status: code verified, 3 files readable

[22987] doi:10.1038/s41598-024-79296-0 [paper]

Novel laser model of optic nerve transection provides valuable insights about the dynamics of optic nerve regeneration.

Journal: Scientific reports

Status: data only

[22988] doi:10.1038/s42003-024-07160-y [paper, repository]

The brain's first "traffic map" through Unified Structural and Functional Connectivity (USFC) modeling.

Journal: Communications biology

Authors' code: ArzuHas/USFC (no license), Zenodo 13997197 (CC-BY-4.0)

Status: code verified, 8 files readable

[22989] doi:10.1186/s12872-024-04274-3 [paper, data]

Exosomes activate hippocampal microglia in atrial fibrillation through long-distance heart-brain communication.

Journal: BMC cardiovascular disorders

Status: data only, 1 dataset cited

[22990] doi:10.3390/diagnostics14222514 [paper, data]

Explainable and Interpretable Model for the Early Detection of Brain Stroke Using Optimized Boosting Algorithms.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 8 November 2024 (36 papers)

[22991] doi:10.1007/s00787-024-02606-4 [paper, data]

Electrophysiological indices of reward anticipation as ADHD risk and prognostic biomarkers.

Journal: European child & adolescent psychiatry

Status: data only, 1 dataset cited

[22992] doi:10.1016/j.bpsgos.2024.100413 [paper, data]

GABA/Glutamate Neuron Differentiation Imbalance and Increased AKT/mTOR Signaling in CNTNAP2^-/- Cerebral Organoids.

Journal: Biological psychiatry global open science

Status: data only, 12 datasets cited

[22993] doi:10.1016/j.crmeth.2024.100901 [paper, repository]

MEA-NAP: A flexible network analysis pipeline for neuronal 2D and 3D organoid multielectrode recordings.

Journal: Cell reports methods

Authors' code: SAND-Lab/MEA-NAP (GPL-3.0)

Status: code verified, 771 files readable, 23 matches

[22994] doi:10.1016/j.csbj.2024.11.007 [paper, repository]

Rapid intraoperative amplicon sequencing of CNS tumor markers.

Journal: Computational and structural biotechnology journal

Authors' code: maximilianevers/AmpliSeq (no license)

Status: empty repository, 1 file readable

[22995] doi:10.1038/s41419-024-07163-x [paper, data]

KHDRBS1 regulates the pentose phosphate pathway and malignancy of GBM through SNORD51-mediated polyadenylation of ZBED6 pre-mRNA.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[22996] doi:10.1038/s41467-024-53891-1 [paper, repository]

VTA dopamine neurons are hyperexcitable in 3xTg-AD mice due to casein kinase 2-dependent SK channel dysfunction.

Journal: Nature communications

Authors' code: heblanke/Electrophysiology_analysis_CK2_study (no license), heblanke/CK2_SK_ephys_and_image_analysis (no license), Zenodo 13891621 (CC-BY-4.0)

Status: code verified, 24 files readable, 5 matches

[22997] doi:10.1038/s41467-024-54032-4 [paper, data]

Predictive learning shapes the representational geometry of the human brain.

Journal: Nature communications

Status: data only, 1 dataset cited

[22998] doi:10.1038/s41467-024-54034-2 [paper, repository]

Molecular signatures of cortical expansion in the human foetal brain.

Journal: Nature communications

Authors' code: garedaba/micro-brain (MIT), Zenodo 13917290 (CC-BY-4.0), doi:10.12751/g-node.qj5hs7 (no license)

Status: code verified, 40 files readable, 30 matches

[22999] doi:10.1038/s41551-024-01280-w [paper, data]

A stealthy neural recorder for the study of behaviour in primates.

Journal: Nature biomedical engineering

Status: code on request, 1 dataset cited

[23000] doi:10.1038/s41598-024-76061-1 [paper, repository]

Alternative production of pro-death Bax∆2 protein via ribosomal frameshift in Alzheimer's disease.

Journal: Scientific reports

Authors' code: PombertLab/SSRG (MIT)

Status: code verified, 14 files readable, 1 match

[23001] doi:10.1038/s41598-024-77923-4 [paper]

A hybrid local-global neural network for visual classification using raw EEG signals.

Journal: Scientific reports

Status: code on request

[23002] doi:10.1038/s41598-024-78308-3 [paper, repository]

The interplay of age, gender and amyloid on brain and cognition in mid-life and older adults.

Journal: Scientific reports

Authors' code: LeonieBorne/brain-cognition-pisa (no license)

Status: code verified, 12 files readable

[23003] doi:10.1038/s41598-024-78351-0 [paper, repository]

Right hemisphere stroke is linked to reduced social connectedness in the UK Biobank cohort.

Journal: Scientific reports

Authors' code: OSF 5qhju (no license)

Status: code verified, 4 files readable, 4 matches

[23004] doi:10.1038/s41598-024-78434-y [paper, data]

Mitochondrial complex I inhibition enhances astrocyte responsiveness to pro-inflammatory stimuli.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23005] doi:10.1038/s41598-024-78772-x [paper, repository]

Pupillary manifolds: uncovering the latent geometrical structures behind phasic changes in pupil size.

Journal: Scientific reports

Authors' code: EBlini/Pupilla (GPL-3.0), OSF dkpcs (no license)

Status: code verified, 57 files readable, 2 matches

[23006] doi:10.1038/s42003-024-07017-4 [paper, repository]

Visualizing the human olfactory projection and ancillary structures in a 3D reconstruction.

Journal: Communications biology

Authors' code: Zenodo 7865523 (Apache-2.0)

Status: code verified, 41 files readable, 4 matches

[23007] doi:10.1038/s42003-024-07170-w [paper]

Associative memory cells of encoding fear signals and anxiety are recruited by neuroligin-3-mediated synapse formation.

Journal: Communications biology

Status: code on request

[23008] doi:10.1038/s44324-024-00037-y [paper]

Variable bioenergetic sensitivity of neurons and astrocytes to insulin and extracellular glucose.

Journal: npj metabolic health and disease

Status: code on request

[23009] doi:10.1073/pnas.2407997121 [paper, repository]

Tracking the topology of neural manifolds across populations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: irishryoon/analogous_neural (MIT)

Status: code verified, 44 files readable, 4 matches

[23010] doi:10.1093/pnasnexus/pgae505 [paper, data]

Energy metabolism dysregulation, cerebrovascular aging, and time-restricted eating: Current evidence and proof-of-concept findings.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[23011] doi:10.1098/rsos.240762 [paper, repository]

Ecological brain: reframing the study of human behaviour and cognition.

Journal: Royal Society open science

Authors' code: naturalistic-data.org/content/intro.html (no license)

Status: code verified

[23012] doi:10.1126/sciadv.ado5820 [paper, repository]

Polygenic risk for alcohol use disorder affects cellular responses to ethanol exposure in a human microglial cell model.

Journal: Science advances

Authors' code: Zenodo 12773329 (CC-BY-4.0), jiayiliujiayi/alcohol_prs (CC0-1.0)

Status: code verified, 44 files readable, 1 match

[23013] doi:10.1126/sciadv.adq4037 [paper, repository]

Within-individual organization of the human cognitive cerebellum: Evidence for closely juxtaposed, functionally specialized regions.

Journal: Science advances

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 4 matches

[23014] doi:10.1126/sciadv.adq5652 [paper, data]

Dynamic overrepresentation of accumbal cues in food- and opioid-seeking rats after prenatal THC exposure.

Journal: Science advances

Status: data only, 1 dataset cited

[23015] doi:10.1162/imag_a_00354 [paper, repository]

Using fMRI to examine nonlinear mixed selectivity tuning to task and category in the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF zvfxu (no license)

Status: code verified, 2 files readable

[23016] doi:10.1162/imag_a_00358 [paper, repository]

Consistent activation differences versus differences in consistent activation: Evaluating meta-analytic contrasts.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: LenFrahm/pyALE (no license), vinkue/ale-meta-contrasts (no license)

Status: code verified, 28 files readable, 3 matches

[23017] doi:10.1162/imag_a_00359 [paper, repository]

Behavior can be decoded across the cortex when individual differences are considered.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF dc9pa (no license)

Status: code verified, 2 files readable

[23018] doi:10.1186/s12984-024-01498-4 [paper, repository]

Effects of different types of high-definition transcranial electrical stimulation on visual working memory and contralateral delayed activity.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: OSF 3wrvu (no license)

Status: code verified, 2 files readable

[23019] doi:10.1371/journal.pcbi.1012468 [paper, repository]

A deep learning model for prediction of autism status using whole-exome sequencing data.

Journal: PLoS computational biology

Authors' code: qingwu17/Autism_Prediction_Model (no license)

Status: code verified, 34 files readable, 14 matches

[23020] doi:10.1371/journal.pone.0306759 [paper, data]

Identifying the impact of ARHGAP and MAP gene families on autism spectrum disorders.

Journal: PloS one

Status: data only, 1 dataset cited

[23021] doi:10.1371/journal.pone.0313252 [paper, data]

Multi-organ gene expression analysis and network modeling reveal regulatory control cascades during the development of hypertension in female spontaneously hypertensive rat.

Journal: PloS one

Status: data only, 1 dataset cited

[23022] doi:10.1523/eneuro.0327-24.2024 [paper, repository]

Dissociation of Attentional State and Behavioral Outcome Using Local Field Potentials.

Journal: eNeuro

Authors' code: surya0021/MayoProject2 (no license)

Status: code verified, 21 files readable, 7 matches

[23023] doi:10.1523/eneuro.0512-23.2024 [paper, repository]

A Stochastic Dynamic Operator Framework That Improves the Precision of Analysis and Prediction Relative to the Classical Spike-Triggered Average Method, Extending the Toolkit.

Journal: eNeuro

Authors' code: GiszterLab/SdoAnalysisToolkit (GPL-3.0)

Status: code verified, 181 files readable, 9 matches

[23024] doi:10.3389/fnetp.2024.1457486 [paper, repository]

Constructing representative group networks from tractography: lessons from a dynamical approach.

Journal: Frontiers in network physiology

Authors' code: sites.google.com/site/cvjoanacabral (no license), breakspear/threshold-consist (no license), brain-networks/distance_dependent_consensus (no license)

Status: code verified, 6 files readable, 1 match

[23025] doi:10.3390/biomedicines12112561 [paper, repository]

Transfer Learning Approaches for Brain Metastases Screenings.

Journal: Biomedicines

Authors' code: luumsk/BrainMetaSeg (MIT)

Status: code verified, 22 files readable, 10 matches

[23026] doi:10.3390/diagnostics14222504 [paper, data]

Reliable Autism Spectrum Disorder Diagnosis for Pediatrics Using Machine Learning and Explainable AI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 4 datasets cited

Thursday, 7 November 2024 (32 papers)

[23027] doi:10.1002/alz.14296 [paper, repository]

Global brain activity and its coupling with cerebrospinal fluid flow is related to tau pathology.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: adni-info.org (no license)

Status: code found, still to be checked

[23028] doi:10.1002/mdc3.14256 [paper, data]

Differentiating Postural and Kinetic Tremor Responses to Deep Brain Stimulation in Essential Tremor.

Journal: Movement disorders clinical practice

Status: data only, 1 dataset cited

[23029] doi:10.1007/s00285-024-02154-0 [paper, repository]

Directional flow in perivascular networks: mixed finite elements for reduced-dimensional models on graphs.

Journal: Journal of mathematical biology

Authors' code: IngeborgGjerde/mixed-fem-on-graphs (no license)

Status: code verified, 24 files readable, 3 matches

[23030] doi:10.1007/s00401-024-02817-8 [paper, data]

Compartment-specific small non-coding RNA changes and nucleolar defects in human mesial temporal lobe epilepsy.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[23031] doi:10.1016/j.bpr.2024.100186 [paper]

TC10 differently controls the dynamics of Exo70 in growth cones of cortical and hippocampal neurons.

Journal: Biophysical reports

Status: code on request

[23032] doi:10.1016/j.celrep.2024.114963 [paper, repository]

Distinctive physiology of molecularly identified medium spiny neurons in the macaque putamen.

Journal: Cell reports

Authors' code: AllenInstitute/MIES (BSD-2-Clause)

Status: code verified, 49 files readable, 1 match

[23033] doi:10.1016/j.crmeth.2024.100897 [paper, data]

Generation of self-renewing neuromesodermal progenitors with neuronal and skeletal muscle bipotential from human embryonic stem cells.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[23034] doi:10.1016/j.crmeth.2024.100898 [paper]

Opto-chemogenetic inhibition of L-type Ca&lt;sub&gt;V&lt;/sub&gt;1 channels in neurons through a membrane-assisted molecular linkage.

Journal: Cell reports methods

Status: code on request

[23035] doi:10.1016/j.eclinm.2024.102904 [paper]

Impact of sedative and appetite-increasing properties on the apparent antidepressant efficacy of mirtazapine, selective serotonin reuptake inhibitors and amitriptyline: an item-based, patient-level meta-analysis.

Journal: EClinicalMedicine

Status: code on request

[23036] doi:10.1016/j.xcrm.2024.101802 [paper, repository]

A prefrontal thalamocortical readout for conflict-related executive dysfunction in schizophrenia.

Journal: Cell reports. Medicine

Authors' code: baxpr/connprep (no license), baxpr/conncalc (no license), thalamicseg/hipsthomasdocker (no license)

Status: code verified, 95 files readable, 5 matches

[23037] doi:10.1016/j.xpro.2024.103406 [paper, repository]

Protocol to study electrophysiological properties of hPSC-derived 3D cardiac organoids using MEA and sharp electrode techniques.

Journal: STAR protocols

Authors' code: axionbio/AxionFileLoader (MIT)

Status: code verified, 50 files readable

[23038] doi:10.1038/s41380-024-02807-y [paper, repository]

Neuroimaging-based variability in subtyping biomarkers for psychiatric heterogeneity.

Journal: Molecular psychiatry

Authors' code: zhenfu-wen01/subtype_variability (no license)

Status: code verified, 11 files readable, 4 matches

[23039] doi:10.1038/s41398-024-03174-6 [paper]

Effect of the social environment on olfaction and social skills in wild-type and a mouse model of autism.

Journal: Translational psychiatry

Status: code on request

[23040] doi:10.1038/s41398-024-03175-5 [paper, repository]

Identification of a DNA methylation signature in whole blood of newborn guinea pigs and human neonates following antenatal betamethasone exposure.

Journal: Translational psychiatry

Authors' code: bkim-lab/DNAm (no license)

Status: dead link

[23041] doi:10.1038/s41419-024-07160-0 [paper, repository]

SIRT6-dependent functional switch via K494 modifications of RE-1 silencing transcription factor.

Journal: Cell death & disease

Authors' code: Zenodo 10785619 (CC-BY-4.0), jebegangsta/rest-project (no license)

Status: code verified, 7 files readable, 6 matches

[23042] doi:10.1038/s41467-024-53473-1 [paper, data]

Structural insights into the agonist selectivity of the adenosine A&lt;sub&gt;3&lt;/sub&gt; receptor.

Journal: Nature communications

Status: data only, 2 datasets cited

[23043] doi:10.1038/s41467-024-53878-y [paper, repository]

Identifying the bioimaging features of Alzheimer's disease based on pupillary light response-driven brain-wide fMRI in awake mice.

Journal: Nature communications

Authors' code: Zenodo 13225145 (CC-BY-4.0), xl872/awake-mice-pupil-fmri-analysis (CC0-1.0)

Status: code verified, 16 files readable

[23044] doi:10.1038/s41537-024-00519-4 [paper, repository]

Do smaller P300 amplitudes in schizophrenia result from larger variability in temporal processing?

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: OSF sh2g7 (no license)

Status: code verified, 4 files readable, 2 matches

[23045] doi:10.1038/s41597-024-04061-x [paper, data]

Simultaneous single-nucleus RNA sequencing and single-nucleus ATAC sequencing of neuroblastoma cell lines.

Journal: Scientific data

Status: data only, 12 datasets cited

[23046] doi:10.1038/s41598-024-78777-6 [paper, repository]

Transcriptomic analysis of melanoma cells reveals an association of α-synuclein with regulation of the inflammatory response.

Journal: Scientific reports

Authors' code: schoo7/SCNA_KO (MIT)

Status: code verified, 2 files readable, 2 matches

[23047] doi:10.1126/science.adq8834 [paper, repository]

C-LTMRs evoke wet dog shakes via the spinoparabrachial pathway.

Journal: Science (New York, N.Y.)

Authors' code: DZneuro/WDS (MIT)

Status: code verified, 2 files readable

[23048] doi:10.1162/imag_a_00351 [paper, repository]

Self-supervised representation learning for nerve fiber distribution patterns in 3D-PLI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: FZJ-INM1-BDA/cl-3d (Apache-2.0)

Status: code verified, 24 files readable, 6 matches

[23049] doi:10.1162/imag_a_00355 [paper, repository]

Elucidating a statistical learning brain network: Coordinate-based meta-analyses and functional connectivity profiles of artificial grammar learning in healthy adults.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mriedel56/surflay (Apache-2.0), NBCLab/niconn-hcp (no license), NBCLab/niconn (MIT), NBCLab/meta-analysis_implicit-learning (no license), neurovault.org/collections/9597 (no license)

Status: code verified, 30 files readable, 6 matches

[23050] doi:10.1162/imag_a_00356 [paper, repository]

Hippocampal microscopic fractional anisotropy is reduced in temporal lobe epilepsy.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: cfmm/matlab/matmri (MIT)

Status: code verified, 67 files readable, 2 matches

[23051] doi:10.1186/s13041-024-01146-x [paper, data]

Chronic corticosterone exposure causes anxiety- and depression-related behaviors with altered gut microbial and brain metabolomic profiles in adult male C57BL/6J mice.

Journal: Molecular brain

Status: data only, 1 dataset cited

[23052] doi:10.1186/s13041-024-01153-y [paper, data]

Transcriptomic and de novo proteomic analyses of organotypic entorhino-hippocampal tissue cultures reveal changes in metabolic and signaling regulators in TTX-induced synaptic plasticity.

Journal: Molecular brain

Status: data only, 4 datasets cited

[23053] doi:10.3389/fcimb.2024.1445741 [paper, data]

Behavior, hormone, and gut microbiota change by YYNS intervention in an OVX mouse model.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[23054] doi:10.3390/brainsci14111126 [paper, data]

Fatigue Characterization of EEG Brain Networks Under Mixed Reality Stereo Vision.

Journal: Brain sciences

Status: data only, 1 dataset cited

[23055] doi:10.3390/nu16223820 [paper, repository]

Spatial Transcriptomics and Single-Nucleus Multi-Omics Analysis Revealing the Impact of High Maternal Folic Acid Supplementation on Offspring Brain Development.

Journal: Nutrients

Authors' code: YU-LIN96/Maternal_HF_brain_development (no license)

Status: code verified, 15 files readable, 5 matches

[23056] doi:10.7554/elife.83424 [paper, repository]

Precise control of neural activity using dynamically optimized electrical stimulation.

Journal: eLife

Authors' code: doi:10.5061/dryad.pk0p2ngrv (no license)

Status: code verified

[23057] doi:10.7554/elife.93766 [paper, repository]

PKA regulation of neuronal function requires the dissociation of catalytic subunits from regulatory subunits.

Journal: eLife

Authors' code: HZhongLab/SI_View (MIT), Zenodo 6982316 (other-open)

Status: code verified, 385 files readable

[23058] doi:10.7554/elife.95873 [paper, repository]

Astrocyte aquaporin mediates a tonic water efflux maintaining brain homeostasis.

Journal: eLife

Authors' code: supp:PMC11542920/elife-95873-code1.zip (no license)

Status: empty repository

Wednesday, 6 November 2024 (37 papers, 14 on this page)

[23059] doi:10.1002/mrm.30294 [paper, repository]

Diffusion-derived intravoxel-incoherent motion anisotropy relates to CSF and blood flow.

Journal: Magnetic resonance in medicine

Authors' code: paulienvoorter/IVIM-DTI-NET (GPL-3.0), Zenodo 12545278 (CC-BY-4.0)

Status: code verified, 7 files readable, 4 matches

[23060] doi:10.1016/j.isci.2024.111333 [paper, data]

The WAVE regulatory complex interacts with Boc and is required for Shh-mediated axon guidance.

Journal: iScience

Status: code on request, 1 dataset cited

[23061] doi:10.1016/j.isci.2024.111337 [paper, repository]

Multimodal single-cell profiling reveals neuronal vulnerability and pathological cell states in focal cortical dysplasia.

Journal: iScience

Authors' code: icgalvao/multiome_singlecell_FCD (no license), immunogenomics/harmony (no license), GreenleafLab/chromVAR (other)

Status: code verified, 74 files readable, 12 matches

[23062] doi:10.1016/j.molmet.2024.102061 [paper, data]

Time-restricted feeding prevents memory impairments induced by obesogenic diet consumption, via hippocampal thyroid hormone signaling.

Journal: Molecular metabolism

Status: data only, 1 dataset cited

[23063] doi:10.1016/j.neuroimage.2024.120909 [paper, repository]

A simple but tough-to-beat baseline for fMRI time-series classification.

Journal: NeuroImage

Authors' code: neuroneural/meanMLP (MIT)

Status: code verified, 53 files readable, 8 matches

[23064] doi:10.1016/j.redox.2024.103420 [paper, data]

A promising drug repurposing approach for Alzheimer's treatment: Givinostat improves cognitive behavior and pathological features in APP/PS1 mice.

Journal: Redox biology

Status: data only, 1 dataset cited

[23065] doi:10.1021/acsomega.4c06450 [paper, data]

OrganoLabeler: A Quick and Accurate Annotation Tool for Organoid Images.

Journal: ACS omega

Status: data only, 1 dataset cited

[23066] doi:10.1038/s41467-024-53430-y [paper, repository]

Enhancing glymphatic fluid transport by pan-adrenergic inhibition suppresses epileptogenesis in male mice.

Journal: Nature communications

Authors' code: Zenodo 13739055 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[23067] doi:10.1038/s41467-024-53776-3 [paper, repository]

Neuroblastoma plasticity during metastatic progression stems from the dynamics of an early sympathetic transcriptomic trajectory.

Journal: Nature communications

Authors' code: broadinstitute/inferCNV (other)

Status: code verified, 82 files readable, 1 match

[23068] doi:10.1038/s41586-024-08139-9 [paper, repository]

Intermittent rate coding and cue-specific ensembles support working memory.

Journal: Nature

Authors' code: panichem/SingleTrialDynamics (MIT)

Status: code verified, 14 files readable, 2 matches

[23069] doi:10.1038/s41586-024-08145-x [paper, repository]

A cellular basis for mapping behavioural structure.

Journal: Nature

Authors' code: mohamadyelgaby/mFC_schema (GPL-2.0)

Status: code verified, 10 files readable, 16 matches

[23070] doi:10.1038/s41586-024-08162-w [paper, repository]

Central pattern generator control of a vertebrate ultradian sleep rhythm.

Journal: Nature

Authors' code: brain.mpg.de/research/laurent-department (no license)

Status: code verified

[23071] doi:10.1038/s41586-024-08168-4 [paper, repository]

Offline ensemble co-reactivation links memories across days.

Journal: Nature

Authors' code: Aharoni-Lab/Miniscope-DAQ-QT-Software (GPL-3.0), denisecailab/RetrospectiveMemoryLinkingAnalysis_2024 (no license)

Status: code verified, 71 files readable, 1 match

[23072] doi:10.1038/s41598-024-76907-8 [paper, repository]

Syntactic and semantic specialization in 9- to 10-year-old children during auditory sentence processing.

Journal: Scientific reports

Authors' code: wangjinvandy/Syntactic_Semantic_Specialization_9_10_yo (Unlicense)

Status: code verified, 49 files readable, 4 matches

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