Every paper, by date: page 104

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 104 of 200: 6 November 2024 to 30 October 2024.

Wednesday, 6 November 2024 (37 papers, 23 on this page)

[23073] doi:10.1038/s41598-024-77094-2 [paper, data]

The ameliorative potential of platelet-rich plasma and exosome on renal ischemia/reperfusion-induced uremic encephalopathy in rats.

Journal: Scientific reports

Status: data only, 2 datasets cited

[23074] doi:10.1038/s41598-024-78169-w [paper, data]

Hypoxia adaptation mechanism in rats' peripheral auditory system in high altitude migration: a time series transcriptome analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23075] doi:10.1038/s42003-024-07120-6 [paper, repository]

Deep functional measurements of Fragile X syndrome human neurons reveal multiparametric electrophysiological disease phenotype.

Journal: Communications biology

Authors' code: Zenodo 13936561 (CC-BY-4.0), q-state-biosciences/fragile-x-manuscript-2024 (no license)

Status: code verified, 4 files readable, 3 matches

[23076] doi:10.1038/s44303-024-00047-x [paper, repository]

Stochastically structured illumination microscopy scan less super resolution imaging.

Journal: Npj imaging

Authors' code: emmxyp/super-resolution-algorithm (no license)

Status: code verified, 2 files readable, 1 match

[23077] doi:10.1073/pnas.2409345121 [paper, repository]

Secondary thalamic dysfunction underlies abnormal large-scale neural dynamics in chronic stroke.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: McIntosh-Lab/stroke_ct_model (MIT), braincode.ca/content/controlled-data-releases (no license)

Status: code verified, 4 files readable, 3 matches

[23078] doi:10.1098/rsob.240100 [paper, repository]

Axon demyelination and degeneration in a zebrafish <i>spastizin</i> model of hereditary spastic paraplegia.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7525355 (no license)

Status: code found, still to be checked

[23079] doi:10.1098/rspb.2024.1909 [paper, data]

Investigating the hemiretinal asymmetry in emotion processing as a function of spatial frequency.

Journal: Proceedings. Biological sciences

Status: data only, 1 dataset cited

[23080] doi:10.1101/2024.11.03.620234 [paper, repository]

Altered EEG markers of reward learning during abstinence in alcohol dependence: a probabilistic reversal learning study

Journal: bioRxiv (preprint)

Authors' code: irenne/MARA (GPL-3.0)

Status: code verified, 8 files readable

[23081] doi:10.1126/sciadv.adn1862 [paper, repository]

Generalizable and replicable brain-based predictions of cognitive functioning across common psychiatric illness.

Journal: Science advances

Authors' code: ThomasYeoLab/Meta_matching_models (MIT), sidchop/PredictingCognition (no license), Zenodo 7596453 (other-open)

Status: code verified, 42 files readable, 6 matches

[23082] doi:10.1126/sciadv.ado1820 [paper, repository]

A normative framework dissociates need and motivation in hypothalamic neurons.

Journal: Science advances

Authors' code: doi:10.5061/dryad.hdr7sqvrs (no license)

Status: code verified

[23083] doi:10.1159/000542395 [paper, data]

The Temporal Relation of Physical Function with Cognition and the Influence of Brain Health in the Oldest-Old.

Journal: Gerontology

Status: data only, 1 dataset cited

[23084] doi:10.1186/s12868-024-00864-1 [paper, data]

Mobile brain imaging in butoh dancers: from rehearsals to public performance.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[23085] doi:10.1186/s12868-024-00901-z [paper, data]

APOE4 rat model of Alzheimer's disease: sex differences, genetic risk and diet.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[23086] doi:10.1186/s40478-024-01877-x [paper, repository]

Host genetics and gut microbiota influence lipid metabolism and inflammation: potential implications for ALS pathophysiology in SOD1<sup>G93A</sup> mice.

Journal: Acta neuropathologica communications

Authors' code: leandrod94/papers (no license)

Status: code verified, 99 files readable, 8 matches

[23087] doi:10.1242/jcs.261575 [paper, data]

Mature microRNA-binding protein QKI suppresses extracellular microRNA let-7b release.

Journal: Journal of cell science

Status: data only, 1 dataset cited

[23088] doi:10.1523/eneuro.0155-24.2024 [paper, repository]

Bilateral Alignment of Receptive Fields in the Olfactory Cortex.

Journal: eNeuro

Authors' code: VNMurthyLab/IpsiContra_v2 (no license)

Status: code verified, 24 files readable, 4 matches

[23089] doi:10.1523/eneuro.0180-24.2024 [paper, repository]

A Whole-Brain Model of the Aging Brain During Slow Wave Sleep.

Journal: eNeuro

Authors' code: gitlab.ebrains.eu/fousekjan/vab-sleep (no license)

Status: dead link

[23090] doi:10.1523/jneurosci.0717-24.2024 [paper, repository]

Spatiotemporal Neural Network for Sublexical Information Processing: An Intracranial SEEG Study.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF mkz2r (no license)

Status: code verified, 27 files readable, 2 matches

[23091] doi:10.3389/fneur.2024.1490763 [paper, repository]

Intra- and inter-network connectivity abnormalities associated with surgical outcomes in degenerative cervical myelopathy patients: a resting-state fMRI study.

Journal: Frontiers in neurology

Authors' code: canlab/Lindquist_Dynamic_Correlation (no license)

Status: code verified, 159 files readable, 3 matches

[23092] doi:10.3389/fnins.2024.1441799 [paper, repository]

Comparison of dry and wet electroencephalography for the assessment of cognitive evoked potentials and sensor-level connectivity.

Journal: Frontiers in neuroscience

Authors' code: nina174/FrontNeurosc_TroNa (no license)

Status: code verified, 17 files readable, 4 matches

[23093] doi:10.3389/fnmol.2024.1459877 [paper, data]

Exposure to the antiretroviral drug dolutegravir impairs structure and neurogenesis in a forebrain organoid model of human embryonic cortical development.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[23094] doi:10.3390/e26110953 [paper, repository]

The Algorithmic Agent Perspective and Computational Neuropsychiatry: From Etiology to Advanced Therapy in Major Depressive Disorder.

Journal: Entropy (Basel, Switzerland)

Authors' code: OSF 3xy5d (no license)

Status: code verified

[23095] doi:10.7554/elife.95213 [paper, repository]

Distinct catecholaminergic pathways projecting to hippocampal CA1 transmit contrasting signals during navigation in familiar and novel environments.

Journal: eLife

Authors' code: chadheer/lc_vta_paper (MIT)

Status: code verified, 30 files readable, 1 match

Tuesday, 5 November 2024 (32 papers)

[23096] doi:10.1002/mds.30039 [paper, repository]

Insulin Resistance Is a Modifying Factor for Parkinson's Disease.

Journal: Movement disorders : official journal of the Movement Disorder Society

Authors' code: uniluxembourg/lcsb/developmental-and-cellular-biology/zagare_2024 (Apache-2.0)

Status: code verified, 9 files readable

[23097] doi:10.1016/j.dcn.2024.101473 [paper, data]

Disentangling the unique contributions of age, pubertal stage, and pubertal hormones to brain structure in childhood and adolescence.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[23098] doi:10.1016/j.isci.2024.111260 [paper, repository]

TLX3 regulates CGN progenitor proliferation during cerebellum development and its dysfunction can lead to autism.

Journal: iScience

Authors' code: Zenodo 13934594 (CC-BY-4.0), satijalab/seurat (other), Zenodo 13934593 (CC-BY-4.0)

Status: code verified, 152 files readable, 12 matches

[23099] doi:10.1016/j.isci.2024.111320 [paper]

Linking new information to a short-lasting memory trace induces consolidation in the hippocampus.

Journal: iScience

Status: code on request

[23100] doi:10.1016/j.omtm.2024.101367 [paper]

Human iPSC-derived neural stem cells engraft and improve pathophysiology of MPS I mice.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[23101] doi:10.1021/acs.jcim.4c01186 [paper, repository]

ChemXTree: A Feature-Enhanced Graph Neural Network-Neural Decision Tree Framework for ADMET Prediction.

Journal: Journal of chemical information and modeling

Authors' code: codeocean:2818241 (no license)

Status: code found, still to be checked

[23102] doi:10.1021/acsomega.4c03546 [paper, data]

Proteinoids-Polyaniline Interaction with Stimulated Neurons on Living and Plastic Surfaces.

Journal: ACS omega

Status: data only, 1 dataset cited

[23103] doi:10.1038/s41417-024-00847-8 [paper, data]

Novel pharmacologic inhibition of lysine-specific demethylase 1 as a potential therapeutic for glioblastoma.

Journal: Cancer gene therapy

Status: data only, 1 dataset cited

[23104] doi:10.1038/s41467-024-53685-5 [paper, repository]

Fast and light-efficient remote focusing for volumetric voltage imaging.

Journal: Nature communications

Authors' code: danionella/Bohm_et_al_2024 (no license)

Status: code verified, 16 files readable, 1 match

[23105] doi:10.1038/s41540-024-00449-y [paper, repository]

Network medicine informed multiomics integration identifies drug targets and repurposable medicines for Amyotrophic Lateral Sclerosis.

Journal: NPJ systems biology and applications

Authors' code: ChengF-Lab/NETTAG (MIT), Zenodo 7159120 (MIT)

Status: code verified, 35 files readable

[23106] doi:10.1039/d4lc00633j [paper, data]

Real-time monitoring of a 3D blood-brain barrier model maturation and integrity with a sensorized microfluidic device.

Journal: Lab on a chip

Status: data only, 1 dataset cited

[23107] doi:10.1073/pnas.2404203121 [paper, repository]

Spatiotemporal transcriptomic map of glial cell response in a mouse model of acute brain ischemia.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: LabGenExp/Spatial_MCAO (no license)

Status: code verified, 24 files readable, 23 matches

[23108] doi:10.1080/07853890.2024.2422050 [paper]

Fibromyalgia is associated with increased odds of prior pain-precipitated relapse among non-treatment-seeking individuals with opioid use disorder.

Journal: Annals of medicine

Status: code on request

[23109] doi:10.1088/1741-2552/ad8837 [paper, data]

High-quality multimodal MRI with simultaneous EEG using conductive ink and polymer-thick film nets.

Journal: Journal of neural engineering

Status: data only, 2 datasets cited

[23110] doi:10.1111/acel.14395 [paper, repository]

Multiomic profiling reveals timing of menopause predicts prefrontal cortex aging and cognitive function.

Journal: Aging cell

Authors' code: gemmashireby/CorticalClock (no license)

Status: code verified, 3 files readable, 2 matches

[23111] doi:10.1159/000541726 [paper, data]

Cerebral Cortical Vasodilation via Nicotinic Receptors by Heated Tobacco Product Aerosol Extract in Rats.

Journal: Journal of vascular research

Status: data only, 1 dataset cited

[23112] doi:10.1162/imag_a_00343 [paper, repository]

A chronometric relationship between circuits underlying learning and error monitoring in the basal ganglia and salience network.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: CIBIT-UC/errormonitoringlearning (no license), CIBIT-UC/errormonitoring_learning (GPL-3.0)

Status: code verified, 65 files readable, 8 matches

[23113] doi:10.1162/imag_a_00344 [paper, repository]

Structural projections to the nucleus accumbens link to impulsive components of human risk preference.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vistalab/vistasoft (no license), OSF t27cq (no license)

Status: code verified, 2,003 files readable, 6 matches

[23114] doi:10.1162/imag_a_00345 [paper, repository]

Balance of power: The choice between trial and participant numbers to optimise the detection of phase-dependent effects.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF vwysk (no license)

Status: code verified, 1 file readable

[23115] doi:10.1162/imag_a_00348 [paper, data]

A fronto-insular network underlies individual variations in anger expression and control.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[23116] doi:10.1186/s13321-024-00917-x [paper, repository]

Quantitative structure-activity relationships of chemical bioactivity toward proteins associated with molecular initiating events of organ-specific toxicity.

Journal: Journal of cheminformatics

Authors' code: jrwnter/cddd (MIT), DGadaleta88/MIE_QSAR (MIT)

Status: code verified, 19 files readable

[23117] doi:10.1186/s41747-024-00512-7 [paper, repository]

Quantitative modeling of lenticulostriate arteries on 7-T TOF-MRA for cerebral small vessel disease.

Journal: European radiology experimental

Authors' code: xingers/SP-CNN (no license)

Status: code verified, 6 files readable, 2 matches

[23118] doi:10.1371/journal.pbio.3002861 [paper, repository]

Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 region.

Journal: PLoS biology

Authors' code: doi:10.7910/dvn/tn3dui (no license), doi:10.7910/dvn/ugoqwe (no license)

Status: code found, still to be checked

[23119] doi:10.1371/journal.pone.0308565 [paper, repository]

A 7T fMRI investigation of hand and tool areas in the lateral and ventral occipitotemporal cortex.

Journal: PloS one

Authors' code: translationalneuromodeling.org/tapas (no license), lukassnoek/scanphyslog2bids (MIT)

Status: code verified, 11 files readable, 3 matches

[23120] doi:10.1371/journal.pone.0309085 [paper, repository]

A detailed analysis of game statistics of professional tennis players: An inferential and machine learning approach.

Journal: PloS one

Authors' code: figshare 24762705 (CC-BY-4.0)

Status: code verified

[23121] doi:10.14336/ad.2024.10530 [paper, data]

Differential Roles of Astrocytic CSF1 in Alzheimer's Disease and Cerebral Amyloid Angiopathy: Insights from Transcriptomic Analysis.

Journal: Aging and disease

Status: data only, 1 dataset cited

[23122] doi:10.21769/bioprotoc.5098 [paper, repository]

A Real-Time Approach for Assessing Rodent Engagement in a Nose-Poking Go/No-Go Behavioral Task Using ArUco Markers.

Journal: Bio-protocol

Authors' code: tomcatsmith19/ArucoDetection (no license), pip.pypa.io/en/stable (no license)

Status: code verified, 153 files readable, 20 matches

[23123] doi:10.3389/fnbeh.2024.1481935 [paper, repository]

A fully automated social interaction chamber for studying social threat learning in mice.

Journal: Frontiers in behavioral neuroscience

Authors' code: UNC-optics/Social-Interaction-Chamber (no license)

Status: code verified, 1 file readable

[23124] doi:10.6026/9732063002001441 [paper, data]

Gene expression analysis of Schizophrenia.

Journal: Bioinformation

Status: data only, 1 dataset cited

[23125] doi:10.7554/elife.92860 [paper, repository]

Natural forgetting reversibly modulates engram expression.

Journal: eLife

Authors' code: rasmusbruckner/engram_elife (MIT)

Status: code verified, 13 files readable, 7 matches

[23126] doi:10.7554/elife.93795 [paper, repository]

Predictably manipulating photoreceptor light responses to reveal their role in downstream visual responses.

Journal: eLife

Authors' code: chrischen2/photoreceptorLinearization (MIT)

Status: code verified, 20 files readable, 9 matches

[23127] doi:10.7554/elife.98489 [paper, repository]

The recurrent temporal restricted Boltzmann machine captures neural assembly dynamics in whole-brain activity.

Journal: eLife

Authors' code: benglitz/Zebrafish_RTRBM (no license)

Status: code verified, 22 files readable, 11 matches

Monday, 4 November 2024 (33 papers)

[23128] doi:10.1002/advs.202407137 [paper, data]

Molecular Lineages and Spatial Distributions of Subplate Neurons in the Human Fetal Cerebral Cortex.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[23129] doi:10.1002/nbm.5280 [paper, repository]

Stimulus-induced rotary saturation imaging of visually evoked response: A pilot study.

Journal: NMR in biomedicine

Authors' code: milecap/RFR_NS_pipelines (MIT)

Status: code verified, 31 files readable, 4 matches

[23130] doi:10.1016/j.isci.2024.111316 [paper, data]

Altered m6A RNA methylation profiles in depression implicate the dysregulation of discrete cellular functions in males and females.

Journal: iScience

Status: data only, 1 dataset cited

[23131] doi:10.1016/j.isci.2024.111317 [paper, repository]

Gene expansion in the hawkmoth <i>Manduca sexta</i> drives evolution of food-associated odorant receptors.

Journal: iScience

Authors' code: doi:10.5061/dryad.tdz08kq7r (no license)

Status: code verified

[23132] doi:10.1016/j.patter.2024.101081 [paper, repository]

An objective quantitative diagnosis of depression using a local-to-global multimodal fusion graph neural network.

Journal: Patterns (New York, N.Y.)

Authors' code: ATP-BME/LGMF-GNN (MIT), figshare 27107440 (CC-BY-4.0)

Status: code verified, 133 files readable, 12 matches

[23133] doi:10.1017/pen.2024.4 [paper, data]

Jaak Panksepp's primary emotions are associated with Diener's global life satisfaction: How low arousal of the SADNESS/separation distress system could form the core of life satisfaction?

Journal: Personality neuroscience

Status: data only, 1 dataset cited

[23134] doi:10.1038/s41467-024-53521-w [paper, repository]

Reward recalibrates rule representations in human amygdala and hippocampus intracranial recordings.

Journal: Nature communications

Authors' code: VoonLab/Reward_recalibrates_NatComms_Code (no license)

Status: code verified, 2 files readable, 1 match

[23135] doi:10.1038/s41467-024-53689-1 [paper, repository]

Genetic risk factors underlying white matter hyperintensities and cortical atrophy.

Journal: Nature communications

Authors' code: FINNGEN/CS-PRS-pipeline (MIT)

Status: code verified, 16 files readable

[23136] doi:10.1038/s41531-024-00800-4 [paper, repository]

The effect of pallidal stimulation on sleep outcomes and related brain connectometries in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: lead-dbs.org (no license)

Status: code verified

[23137] doi:10.1038/s41593-024-01794-1 [paper, repository]

Leveraging deep single-soma RNA sequencing to explore the neural basis of human somatosensation.

Journal: Nature neuroscience

Authors' code: taimeimiaole/NN_hDRG-neuron-sequencing (no license)

Status: code verified, 26 files readable, 11 matches

[23138] doi:10.1038/s41598-024-74487-1 [paper]

Nerve injury inhibits Oprd1 and Cnr1 transcription through REST in primary sensory neurons.

Journal: Scientific reports

Status: data only

[23139] doi:10.1038/s41598-024-77609-x [paper, data]

TATPat based explainable EEG model for neonatal seizure detection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23140] doi:10.1038/s41598-024-78173-0 [paper]

Shared oscillatory mechanisms of alpha-band activity in prefrontal regions in eyes open and closed state using a portable EEG acquisition device.

Journal: Scientific reports

Status: code on request

[23141] doi:10.1038/s42255-024-01159-9 [paper, repository]

A pathogenic role for IL-10 signalling in capillary stalling and cognitive impairment in type 1 diabetes.

Journal: Nature metabolism

Authors' code: preeson/Sharma-et-al-Nat-Met-2024-Flux-Estimation (no license)

Status: code verified, 2 files readable, 1 match

[23142] doi:10.1073/pnas.2221623121 [paper, repository]

V1 neurons are tuned to perceptual borders in natural scenes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: freeman-lab/metamers (MIT), OSF qpc2d (no license)

Status: code verified, 45 files readable, 2 matches

[23143] doi:10.1073/pnas.2307953121 [paper, data]

The role of astrocytes in depression, its prevention, and treatment by targeting astroglial gliotransmitter release.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[23144] doi:10.1073/pnas.2317864121 [paper, data]

tRNA modification enzyme-dependent redox homeostasis regulates synapse formation and memory.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[23145] doi:10.1083/jcb.202403141 [paper, repository]

Unveiling the cell biology of hippocampal neurons with dendritic axon origin.

Journal: The Journal of cell biology

Authors' code: HU-Berlin-Optobiology/AIS-project (no license)

Status: code verified, 16 files readable, 10 matches

[23146] doi:10.1093/psyrad/kkae021 [paper]

Explorations of using a convolutional neural network to understand brain activations during movie watching.

Journal: Psychoradiology

Status: code on request

[23147] doi:10.1101/2024.11.04.621950 [paper, repository]

Hippocampo-neocortical interaction as compressive retrieval-augmented generation

Journal: bioRxiv (preprint)

Authors' code: ellie-as/hippocampal-neocortical-RAG (MIT)

Status: code verified, 73 files readable, 21 matches

[23148] doi:10.1111/bpa.13318 [paper, repository]

Altered immune response is associated with sex difference in vulnerability to Alzheimer's disease in human prefrontal cortex.

Journal: Brain pathology (Zurich, Switzerland)

Authors' code: WHYing886/graduate_AD_Sex (no license)

Status: dead link

[23149] doi:10.1186/s10020-024-00953-1 [paper]

Extracellular vesicles from microglial cells activated by abnormal heparan sulfate oligosaccharides from Sanfilippo patients impair neuronal dendritic arborization.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only

[23150] doi:10.1186/s12916-024-03722-3 [paper]

Involvement of sphingosine-1-phosphate receptor 1 in pain insensitivity in a BTBR mouse model of autism spectrum disorder.

Journal: BMC medicine

Status: data only

[23151] doi:10.1186/s12974-024-03272-8 [paper, data]

Shifts in the spatiotemporal profile of inflammatory phenotypes of innate immune cells in the rat brain following acute intoxication with the organophosphate diisopropylfluorophosphate.

Journal: Journal of neuroinflammation

Status: data only, 4 datasets cited

[23152] doi:10.1371/journal.pcbi.1012531 [paper, repository]

Synapses learn to utilize stochastic pre-synaptic release for the prediction of postsynaptic dynamics.

Journal: PLoS computational biology

Authors' code: kappeld/synaptic-predictive-processing (GPL-3.0)

Status: code verified, 21 files readable, 3 matches

[23153] doi:10.1371/journal.pone.0304547 [paper, data]

Epac activation reduces trans-endothelial migration of undifferentiated neuroblastoma cells and cellular differentiation with a CDK inhibitor further enhances Epac effect.

Journal: PloS one

Status: data only, 1 dataset cited

[23154] doi:10.3390/ijms252111847 [paper, repository]

AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium.

Journal: International journal of molecular sciences

Authors' code: LCP-ICG/AIMetabolicMarker (no license)

Status: code verified, 2 files readable, 1 match

[23155] doi:10.3390/s24217091 [paper, data]

Edge Computing for AI-Based Brain MRI Applications: A Critical Evaluation of Real-Time Classification and Segmentation.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[23156] doi:10.7554/elife.90930 [paper, repository]

Difficulty in artificial word learning impacts targeted memory reactivation and its underlying neural signatures.

Journal: eLife

Authors' code: OSF tjb9p (no license)

Status: code verified, 5 files readable

[23157] doi:10.7554/elife.96155 [paper, data]

Age-related decline in blood-brain barrier function is more pronounced in males than females in parietal and temporal regions.

Journal: eLife

Status: code on request, 1 dataset cited

[23158] doi:10.7554/elife.97883 [paper, data]

Coupling of saccade plans to endogenous attention during urgent choices.

Journal: eLife

Status: data only, 2 datasets cited

[23159] doi:10.7554/elife.98458 [paper, repository]

Cryo-electron tomographic investigation of native hippocampal glutamatergic synapses.

Journal: eLife

Authors' code: BradyAJohnston/MolecularNodes (GPL-3.0)

Status: code verified, 555 files readable

[23160] doi:10.7717/peerj.18217 [paper, data]

Effect of habitual physical activity on motor performance and prefrontal cortex activity during implicit motor learning.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 3 November 2024 (8 papers)

[23161] doi:10.1002/advs.202405092 [paper, data]

Endosomal Trafficking Bypassed by the RAB5B-CD109 Interplay Promotes Axonogenesis in KRAS-Mutant Pancreatic Cancer.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[23162] doi:10.1038/s41380-024-02802-3 [paper, repository]

Attention and executive delays in early childhood: a meta-analysis of neurodevelopmental conditions.

Journal: Molecular psychiatry

Authors' code: CarterSunUSYD/EF_attention_first5years_metaanalysis (MIT)

Status: code verified, 3 files readable, 3 matches

[23163] doi:10.1038/s41467-024-53866-2 [paper, repository]

Hippocampal contextualization of social rewards in mice.

Journal: Nature communications

Authors' code: Zenodo 13770478 (CC-BY-4.0)

Status: code verified, 5 files readable

[23164] doi:10.1038/s41467-024-53899-7 [paper, repository]

Hierarchical regulation of functionally antagonistic neuropeptides expressed in a single neuron pair.

Journal: Nature communications

Authors' code: micro-manager/mmcoreanddevices (no license), Zenodo 13958554 (CC-BY-4.0)

Status: code verified, 1,681 files readable

[23165] doi:10.1038/s41598-024-76931-8 [paper, repository]

Neural dissociation between computational and perceived measures of curvature.

Journal: Scientific reports

Authors' code: OSF h3uyg (no license)

Status: code verified, 1 file readable

[23166] doi:10.1038/s41598-024-77895-5 [paper, repository]

Spatiotemporal hierarchies of face representation in the human ventral temporal cortex.

Journal: Scientific reports

Authors' code: LBCN-Stanford/Preprocessing_pipeline (no license)

Status: code verified, 158 files readable, 4 matches

[23167] doi:10.3390/ijms252111818 [paper, repository]

NFSA-DTI: A Novel Drug-Target Interaction Prediction Model Using Neural Fingerprint and Self-Attention Mechanism.

Journal: International journal of molecular sciences

Authors' code: xiaofeinb233/NFSA_DTI (no license)

Status: code verified, 8 files readable, 2 matches

[23168] doi:10.3390/s24217080 [paper, data]

A Cross-Attention-Based Class Alignment Network for Cross-Subject EEG Classification in a Heterogeneous Space.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 2 November 2024 (10 papers)

[23169] doi:10.1007/s10071-024-01912-3 [paper, data]

Evidence for a general cognitive structure in pigeons (Columba livia).

Journal: Animal cognition

Status: data only, 1 dataset cited

[23170] doi:10.1007/s10548-024-01088-6 [paper]

Transcutaneous Auricular Vagus Nerve Stimulation for Visually Induced Motion Sickness: An eLORETA Study.

Journal: Brain topography

Status: code on request

[23171] doi:10.1007/s43440-024-00674-6 [paper, data]

Activation of 5-HT₇ receptors in the mouse dentate gyrus does not affect theta-burst-induced plasticity at the perforant path synapse.

Journal: Pharmacological reports : PR

Status: data only, 1 dataset cited

[23172] doi:10.1016/j.heliyon.2024.e37890 [paper]

Abnormal intrinsic brain functional network dynamics in patients with retinal detachment based on graph theory and machine learning.

Journal: Heliyon

Status: code on request

[23173] doi:10.1016/j.heliyon.2024.e39830 [paper, data]

Hsa_Circ_0105596/FTO inhibits progression of Parkinson's disease by sponging miR-187-3p and regulating eEF2.

Journal: Heliyon

Status: data only, 1 dataset cited

[23174] doi:10.1038/s41467-024-53666-8 [paper, repository]

HiDDEN: a machine learning method for detection of disease-relevant populations in case-control single-cell transcriptomics data.

Journal: Nature communications

Authors' code: tudaga/LabelCorrection (MIT), theislab/pertpy (MIT), Zenodo 13823942 (CC-BY-4.0)

Status: code verified, 118 files readable, 18 matches

[23175] doi:10.1038/s41598-024-77849-x [paper]

Dynamical mechanisms of how an RNN keeps a beat, uncovered with a low-dimensional reduced model.

Journal: Scientific reports

Status: code on request

[23176] doi:10.1101/2024.11.01.24316562 [paper, repository]

Positive and negative affect, related mental health traits, and cognitive performance: shared genetic architecture and potential causality

Journal: medRxiv (preprint)

Authors' code: MRCIEU/ieugwasr (other)

Status: code verified, 24 files readable

[23177] doi:10.3390/genes15111431 [paper, data]

Tracing ALS Degeneration: Insights from Spinal Cord and Cortex Transcriptomes.

Journal: Genes

Status: data only, 1 dataset cited

[23178] doi:10.34172/bi.30586 [paper, data]

Smart IoT-driven biosensors for EEG-based driving fatigue detection: A CNN-XGBoost model enhancing healthcare quality.

Journal: BioImpacts : BI

Status: data only, 1 dataset cited

Friday, 1 November 2024 (84 papers)

[23179] doi:10.1002/brb3.70157 [paper, repository]

Clustering Electrophysiological Predisposition to Binge Drinking: An Unsupervised Machine Learning Analysis.

Journal: Brain and behavior

Authors' code: scikit-learn.org/stable/modules (no license)

Status: code verified

[23180] doi:10.1002/brb3.70163 [paper]

Accelerating Brain MR Imaging With Multisequence and Convolutional Neural Networks.

Journal: Brain and behavior

Status: code on request

[23181] doi:10.1002/cne.25680 [paper, repository]

Small Brains: Body Shape Constrains Tissue Allocation to the Central Nervous System in Ant-Mimicking Spiders.

Journal: The Journal of comparative neurology

Authors' code: supp:PMC11588002/CNE-532-e25680-s002.zip (no license)

Status: code verified, 3 files readable, 3 matches

[23182] doi:10.1002/cne.70001 [paper, repository]

Comparative Physiology and Morphology of BLA-Projecting NBM/SI Cholinergic Neurons in Mouse and Macaque.

Journal: The Journal of comparative neurology

Authors' code: Zenodo 10975327 (CC-BY-4.0), nsdesai/patch_clamp_analysis (no license)

Status: code verified, 33 files readable, 3 matches

[23183] doi:10.1002/ctm2.70030 [paper, repository]

An AMP-activated protein kinase-PGC-1α axis mediates metabolic plasticity in glioblastoma.

Journal: Clinical and translational medicine

Authors' code: Zenodo 22040374 (MIT)

Status: code verified, 12 files readable, 1 match

[23184] doi:10.1002/ctm2.70100 [paper, data]

CircSpna2 attenuates cuproptosis by mediating ubiquitin ligase Keap1 to regulate the Nrf2-Atp7b signalling axis in depression after traumatic brain injury in a mouse model.

Journal: Clinical and translational medicine

Status: data only, 1 dataset cited

[23185] doi:10.1002/hbm.26791 [paper, data]

Tidying up white matter: Neuroplastic transformations in sensorimotor tracts following slackline skill acquisition.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[23186] doi:10.1002/hbm.70063 [paper, repository]

OpenMAP-T1: A Rapid Deep-Learning Approach to Parcellate 280 Anatomical Regions to Cover the Whole Brain.

Journal: Human brain mapping

Authors' code: OishiLab/OpenMAP-T1 (other)

Status: code verified, 22 files readable, 7 matches

[23187] doi:10.1002/hbm.70066 [paper, repository]

Characterization and Mitigation of a Simultaneous Multi-Slice fMRI Artifact: Multiband Artifact Regression in Simultaneous Slices.

Journal: Human brain mapping

Authors' code: mathworks.com/matlabcentral/fileexchange (no license)

Status: code found, still to be checked

[23188] doi:10.1002/hbm.70076 [paper]

Non-invasive Assessment of Cerebral Hemodynamics Using Resting-State Functional Magnetic Resonance Imaging in Multiple Sclerosis and Age-Related White Matter Lesions.

Journal: Human brain mapping

Status: code on request

[23189] doi:10.1002/iid3.70082 [paper, data]

Downregulation of Notch Signaling-Stimulated Genes in Neurovascular Unit Alterations Induced by Chronic Cerebral Hypoperfusion.

Journal: Immunity, inflammation and disease

Status: data only, 1 dataset cited

[23190] doi:10.1016/j.isci.2024.111298 [paper, repository]

Evaluating chemical effects on human neural cells through calcium imaging and deep learning.

Journal: iScience

Authors' code: BansalAnkush/Chemical-Effects-on-NPCs (no license)

Status: code verified, 7 files readable, 3 matches

[23191] doi:10.1016/j.isci.2024.111299 [paper]

Agarose hydrogel-mediated electroporation method for retinal tissue cultured at the air-liquid interface.

Journal: iScience

Status: code on request

[23192] doi:10.1038/s41467-024-52355-w [paper, repository]

Network community detection via neural embeddings.

Journal: Nature communications

Authors' code: skojaku/community-detection-via-neural-embedding (MIT)

Status: code verified, 47 files readable, 9 matches

[23193] doi:10.1038/s41467-024-53613-7 [paper, repository]

Human iPSC-derived neural stem cells displaying radial glia signature exhibit long-term safety in mice.

Journal: Nature communications

Authors' code: young_computation/rose (no license)

Status: code verified, 8 files readable, 2 matches

[23194] doi:10.1038/s41537-024-00517-6 [paper]

Brain structural associations of syntactic complexity and diversity across schizophrenia spectrum and major depressive disorders, and healthy controls.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[23195] doi:10.1038/s41597-024-04053-x [paper, repository]

An MRI Deep Brain Adult Template With An Advanced Atlas-Based Tool For Diffusion Tensor Imaging Analysis.

Journal: Scientific data

Authors' code: OSF 6m3jv (no license)

Status: code verified

[23196] doi:10.1038/s41598-024-76058-w [paper, data]

AVE0991 ameliorates dopaminergic neuronal damage in Parkinson's disease through HOTAIRM1/miR-223-3p/α-synuclein axis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23197] doi:10.1038/s41598-024-77615-z [paper, repository]

Resting-state functional MRI of the nose as a novel investigational window into the nervous system.

Journal: Scientific reports

Authors' code: support.brainvoyager.com/brainvoyager/available-tools (no license)

Status: dead link

[23198] doi:10.1038/s41598-024-78297-3 [paper]

Altered resting-state functional connectivity in a thalamo-cortico-cerebellar network in patients with schizophrenia.

Journal: Scientific reports

Status: code on request

[23199] doi:10.1038/s44323-024-00012-2 [paper, data]

Sleep and diurnal alternative polyadenylation sites associated with human APA-linked brain disorders.

Journal: Npj biological timing and sleep

Status: data only, 1 dataset cited

[23200] doi:10.1073/pnas.2318837121 [paper, repository]

Cellular-resolution optogenetics reveals attenuation-by-suppression in visual cortical neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 13851356 (CC-BY-4.0)

Status: code verified

[23201] doi:10.1088/1741-2552/ad88a4 [paper, repository]

Reducing power requirements for high-accuracy decoding in iBCIs.

Journal: Journal of neural engineering

Authors' code: arsedler9/lfads-torch (other), snel-repo/power-calculations (no license)

Status: code verified, 35 files readable, 10 matches

[23202] doi:10.1093/bib/bbae614 [paper, repository]

A versatile pipeline to identify convergently lost ancestral conserved fragments associated with convergent evolution of vocal learning.

Journal: Briefings in bioinformatics

Authors' code: lixiaoyi-12/FCM (no license)

Status: code verified, 33 files readable, 3 matches

[23203] doi:10.1093/bib/bbae673 [paper, repository]

Explainable deep neural networks for predicting sample phenotypes from single-cell transcriptomics.

Journal: Briefings in bioinformatics

Authors' code: GENyO-BioInformatics/singleDeep (GPL-3.0), GENyO-BioInformatics/singleDeep_article (GPL-3.0)

Status: code verified, 35 files readable, 10 matches

[23204] doi:10.1093/bib/bbae704 [paper, repository]

Genome-wide association neural networks identify genes linked to family history of Alzheimer's disease.

Journal: Briefings in bioinformatics

Authors' code: titoghose/GWANN (no license)

Status: code verified, 30 files readable, 4 matches

[23205] doi:10.1093/bib/bbaf026 [paper, repository]

TargetCLP: clathrin proteins prediction combining transformed and evolutionary scale modeling-based multi-view features via weighted feature integration approach.

Journal: Briefings in bioinformatics

Authors' code: MateeullahKhan/TargetCLP (no license)

Status: code verified, 3 files readable, 1 match

[23206] doi:10.1093/bib/bbaf037 [paper, data]

Inferring the genetic relationships between unsupervised deep learning-derived imaging phenotypes and glioblastoma through multi-omics approaches.

Journal: Briefings in bioinformatics

Status: data only, 1 dataset cited

[23207] doi:10.1093/bib/bbaf046 [paper, repository]

Introducing TEC-LncMir for prediction of lncRNA-miRNA interactions through deep learning of RNA sequences.

Journal: Briefings in bioinformatics

Authors' code: tingpeng17/TEC-LncMir (no license)

Status: code verified, 20 files readable, 7 matches

[23208] doi:10.1093/bib/bbaf066 [paper, repository]

ESM-BBB-Pred: a fine-tuned ESM 2.0 and deep neural networks for the identification of blood-brain barrier peptides.

Journal: Briefings in bioinformatics

Authors' code: Ansar390/BBB_DEEP_ESM2.0 (no license)

Status: code verified, 2 files readable, 1 match

[23209] doi:10.1093/bioinformatics/btae676 [paper, repository]

CVR-BBI: an open-source VR platform for multi-user collaborative brain to brain interfaces.

Journal: Bioinformatics (Oxford, England)

Authors' code: DILIU1/CVR-BBI (MIT)

Status: code verified, 2,000 files readable, 1 match

[23210] doi:10.1093/brain/awae139 [paper, repository]

Transient brain structure changes after high phenylalanine exposure in adults with phenylketonuria.

Journal: Brain : a journal of neurology

Authors' code: SCAN-NRAD/DL-DiReCT (BSD-3-Clause)

Status: code verified, 15 files readable, 3 matches

[23211] doi:10.1093/brain/awae149 [paper, repository]

Single-value brain activity scores reflect both severity and risk across the Alzheimer's continuum.

Journal: Brain : a journal of neurology

Authors' code: JoramSoch/FADE_SAME (GPL-3.0), JoramSoch/DELCODE_SAME (GPL-3.0)

Status: code verified, 47 files readable, 7 matches

[23212] doi:10.1093/brain/awae185 [paper, data]

Biallelic null variants in PNPLA8 cause microcephaly by reducing the number of basal radial glia.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[23213] doi:10.1093/brain/awae197 [paper, data]

Differential reorganization of episodic and semantic memory systems in epilepsy-related mesiotemporal pathology.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[23214] doi:10.1093/brain/awae210 [paper, data]

Neurophysiological markers of motor compensatory mechanisms in early Parkinson's disease.

Journal: Brain : a journal of neurology

Status: data only, 2 datasets cited

[23215] doi:10.1093/brain/awae255 [paper, repository]

Plasma biomarkers in chronic single moderate-severe traumatic brain injury.

Journal: Brain : a journal of neurology

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[23216] doi:10.1093/cercor/bhae433 [paper, repository]

Specific inhibition and disinhibition in the higher-order structure of a cortical connectome.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: JasonPSmith/flagser-count (MIT), MWolfR/excitation_inhibition_topology (Apache-2.0)

Status: code verified, 33 files readable, 4 matches

[23217] doi:10.1093/cercor/bhae435 [paper, repository]

Global changes in the pattern of connectivity in developmental prosopagnosia.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 7kf4u (no license)

Status: code verified, 6 files readable, 7 matches

[23218] doi:10.1093/cercor/bhae437 [paper, repository]

Effects of left ventrolateral prefrontal stimulation on forming and maintaining deep and shallow episodic traces.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF tmg8h (no license)

Status: code found, still to be checked

[23219] doi:10.1093/cercor/bhae441 [paper, data]

Neurophysiological evidence of motor contribution to vicarious affective touch.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[23220] doi:10.1093/cercor/bhae452 [paper, repository]

Online transcranial magnetic stimulation reveals dynamic interactions between language control and processing in bilingual language production.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF bnceq (no license)

Status: code verified

[23221] doi:10.1093/hmg/ddae135 [paper, repository]

Modeling antisense oligonucleotide therapy in MECP2 duplication syndrome human iPSC-derived neurons reveals gene expression programs responsive to MeCP2 levels.

Journal: Human molecular genetics

Authors' code: Zenodo 1226607 (CC-BY-4.0)

Status: code verified

[23222] doi:10.1093/jamia/ocae165 [paper, repository]

Towards objective and systematic evaluation of bias in artificial intelligence for medical imaging.

Journal: Journal of the American Medical Informatics Association : JAMIA

Authors' code: estanley16/SimBA (GPL-3.0)

Status: code verified, 35 files readable, 8 matches

[23223] doi:10.1093/molbev/msae217 [paper, repository]

Genetic and Developmental Divergence in the Neural Crest Program between Cichlid Fish Species.

Journal: Molecular biology and evolution

Authors' code: tplinderoth/cichlids (GPL-3.0), BlakeRMills/MetBrewer (CC0-1.0), Santos-cichlids/neural-crest-sox10-paralogs-cichlids (no license)

Status: code verified, 34 files readable

[23224] doi:10.1093/nar/gkae864 [paper, data]

Integrated multi-omics analysis of PBX1 in mouse adult neural stem- and progenitor cells identifies a transcriptional module that functionally links PBX1 to TCF3/4.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[23225] doi:10.1093/nar/gkae876 [paper, repository]

Dual decoding of cell types and gene expression in spatial transcriptomics with PANDA.

Journal: Nucleic acids research

Authors' code: Zenodo 13337304 (MIT), Zenodo 13323433 (CC-BY-4.0), Zenodo 13324637 (CC-BY-4.0), Zenodo 13324611 (CC-BY-4.0), Zenodo 13324624 (CC-BY-4.0), Zhangxf-ccnu/PANDA (other)

Status: code verified, 30 files readable, 27 matches

[23226] doi:10.1093/nar/gkae950 [paper, repository]

Recruitment of homodimeric proneural factors by conserved CAT-CAT E-boxes drives major epigenetic reconfiguration in cortical neurogenesis.

Journal: Nucleic acids research

Authors' code: SantpereLab/neurog2-neurod2-neurogenesis (no license), Zenodo 13898345 (CC-BY-4.0)

Status: code verified, 28 files readable, 12 matches

[23227] doi:10.1093/scan/nsae072 [paper, repository]

Proximity within adolescent peer networks predicts neural similarity during affective experience.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF svbpq (no license)

Status: code verified, 2 files readable, 2 matches

[23228] doi:10.1093/scan/nsae075 [paper, repository]

Brain encoding during perceived control as a prospective predictor of improvement in quality of life.

Journal: Social cognitive and affective neuroscience

Authors' code: delgado-lab/Value_of_Control (no license)

Status: code verified, 17 files readable

[23229] doi:10.1093/stcltm/szae066 [paper, data]

Progranulin enhances the engraftment of transplanted human iPS cell-derived cerebral neurons.

Journal: Stem cells translational medicine

Status: data only, 1 dataset cited

[23230] doi:10.1096/fj.202401526rr [paper, data]

TAD-dependent sub-TAD is required for enhancer-promoter interaction enabling the β-globin transcription.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[23231] doi:10.1097/md.0000000000040484 [paper, data]

m6A-related genes and their role in Parkinson's disease: Insights from machine learning and consensus clustering.

Journal: Medicine

Status: data only, 1 dataset cited

[23232] doi:10.1097/md.0000000000040551 [paper, data]

Integrative analysis of single-nucleus RNA sequencing and Mendelian randomization to explore novel risk genes for Alzheimer's disease.

Journal: Medicine

Status: data only, 1 dataset cited

[23233] doi:10.1097/md.0000000000040683 [paper, data]

Auditory mismatch negativity is larger during exhalation than inhalation.

Journal: Medicine

Status: data only, 1 dataset cited

[23234] doi:10.1111/cns.70119 [paper, repository]

Automated Hematoma Detection and Outcome Prediction in Patients With Traumatic Brain Injury.

Journal: CNS neuroscience & therapeutics

Authors' code: LuckyXuYang/Prediction-of-mortality-in-TBI-patients (no license)

Status: code verified, 89 files readable, 13 matches

[23235] doi:10.1111/cns.70129 [paper, repository]

Brain Morphometric Alterations in Focal to Bilateral Tonic-Clonic Seizures in Epilepsy Associated With Excitatory/Inhibitory Imbalance.

Journal: CNS neuroscience & therapeutics

Authors' code: netneurolab/abagen (BSD-3-Clause), SarahMorgan/Morphometric_Similarity_SZ (MIT), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 64 files readable, 4 matches

[23236] doi:10.1111/cns.70132 [paper, repository]

Novel Insights Into the Causal Effects and Shared Genetics Between Body Fat and Parkinson Disease.

Journal: CNS neuroscience & therapeutics

Authors' code: Zenodo 8011558 (other-open), nealelab/uk_biobank_gwas (no license)

Status: code verified, 104 files readable

[23237] doi:10.1111/cogs.70019 [paper, repository]

Dissociable Contributions of Goal-Relevant Evidence and Goal-Irrelevant Familiarity to Individual and Developmental Differences in Conflict Recognition.

Journal: Cognitive science

Authors' code: OSF tmzye (no license)

Status: code verified, 34 files readable, 3 matches

[23238] doi:10.1111/jpi.70020 [paper, data]

Skeletal Phenotyping of Period-1-Deficient Melatonin-Proficient Mice.

Journal: Journal of pineal research

Status: data only, 1 dataset cited

[23239] doi:10.1121/10.0034329 [paper, repository]

Fundamental frequency predominantly drives talker differences in auditory brainstem responses to continuous speech.

Journal: JASA express letters

Authors' code: polonenkolab/peaky_pitchshift (BSD-3-Clause), Zenodo 11640 (BSD-3-Clause), maddoxlab/spdif-splitter (BSD-3-Clause), labsn/expyfun (BSD-3-Clause)

Status: code verified, 173 files readable, 7 matches

[23240] doi:10.1126/sciadv.adq3539 [paper, data]

Mouse α-synuclein fibrils are structurally and functionally distinct from human fibrils associated with Lewy body diseases.

Journal: Science advances

Status: data only, 1 dataset cited

[23241] doi:10.1148/radiol.233099 [paper, repository]

Aquaporin-4 Immunoglobulin G-seropositive Neuromyelitis Optica Spectrum Disorder MRI Characteristics: Data Analysis from the International Real-World PAMRINO Study Cohort.

Journal: Radiology

Authors' code: guido-s/meta (GPL-2.0)

Status: code verified, 142 files readable

[23242] doi:10.1148/ryai.230520 [paper, repository]

Boosting Deep Learning for Interpretable Brain MRI Lesion Detection through the Integration of Radiology Report Information.

Journal: Radiology. Artificial intelligence

Authors' code: LisongDai/ReportGuidedNet (no license)

Status: code verified, 40 files readable, 1 match

[23243] doi:10.1155/2024/4399757 [paper]

Resolving Heterogeneity in Posttraumatic Stress Disorder Using Individualized Structural Covariance Network Analysis.

Journal: Depression and anxiety

Status: code on request

[23244] doi:10.1158/0008-5472.can-24-0134 [paper, data]

Targeting Catechol-O-Methyltransferase Induces Mitochondrial Dysfunction and Enhances the Efficacy of Radiotherapy in Glioma.

Journal: Cancer research

Status: code on request, 1 dataset cited

[23245] doi:10.1158/2767-9764.crc-24-0201 [paper]

Spatial Multiomics Reveals Intratumoral Immune Heterogeneity with Distinct Cytokine Networks in Lung Cancer Brain Metastases.

Journal: Cancer research communications

Status: code on request

[23246] doi:10.1159/000542220 [paper, repository]

Gut Microbiome in Impulsively Violent Female Convicts.

Journal: Neuropsychobiology

Authors' code: JanetJezkova/Gut-microbiota_Impulsivity_2023 (no license)

Status: code verified, 4 files readable, 3 matches

[23247] doi:10.1162/imag_a_00342 [paper, repository]

Bayesian evidence for the neural dissociation between finger and hand imitation skills.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nitrc.org/projects/iit (no license)

Status: code verified

[23248] doi:10.1162/imag_a_00349 [paper, repository]

Characterising the contribution of auditory and somatosensory inputs to TMS-evoked potentials following stimulation of prefrontal, premotor, and parietal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: BMHLab/TEPs-PEPs (no license), ManaBiabani/NonMotor_TEPs_PEPs (no license)

Status: code verified, 34 files readable, 3 matches

[23249] doi:10.1162/imag_a_00350 [paper, repository]

Arbitrary methodological decisions skew inter-brain synchronization estimates in hyperscanning-EEG studies.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: marizi/CCorrIBS (no license), OSF zwnm5 (no license)

Status: code verified, 24 files readable, 12 matches

[23250] doi:10.1167/jov.24.12.7 [paper, repository]

Binocular integration of chromatic and luminance signals.

Journal: Journal of vision

Authors' code: OSF 3vdga (no license)

Status: code verified, 7 files readable, 9 matches

[23251] doi:10.1186/s12880-024-01476-1 [paper, data]

Efficient brain tumor grade classification using ensemble deep learning models.

Journal: BMC medical imaging

Status: data only, 2 datasets cited

[23252] doi:10.1186/s12974-024-03278-2 [paper, data]

Senolytic treatment diminishes microglia and decreases severity of experimental autoimmune encephalomyelitis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[23253] doi:10.1186/s40644-024-00796-3 [paper, repository]

Multi-parameter MRI radiomics model in predicting postoperative progressive cerebral edema and hemorrhage after resection of meningioma.

Journal: Cancer imaging : the official publication of the International Cancer Imaging Society

Authors' code: tanamian/MeningiomaMRI-Radiomics (no license)

Status: code verified, 2 files readable, 5 matches

[23254] doi:10.1371/journal.pone.0310173 [paper, data]

Cerebellar repetitive transcranial magnetic stimulation has no effect on contraction-induced facilitation of corticospinal excitability.

Journal: PloS one

Status: data only, 1 dataset cited

[23255] doi:10.1371/journal.pone.0312822 [paper, repository]

Multilabel SegSRGAN-A framework for parcellation and morphometry of preterm brain in MRI.

Journal: PloS one

Authors' code: Zenodo 12659424 (cecill-b)

Status: code verified

[23256] doi:10.1371/journal.pone.0313192 [paper, data]

Customization of neonatal functional magnetic resonance imaging: A preclinical phantom-based study.

Journal: PloS one

Status: data only, 1 dataset cited

[23257] doi:10.21873/cgp.20477 [paper, data]

Gene Expression Profiling Regulated by lncRNA H19 Using Bioinformatic Analyses in Glioma Cell Lines.

Journal: Cancer genomics & proteomics

Status: data only, 1 dataset cited

[23258] doi:10.31557/apjcp.2024.25.11.4035 [paper, data]

Bioinformatics Examination of Glioblastoma Identifies a Potential Panel of Therapeutic Biomarkers.

Journal: Asian Pacific journal of cancer prevention : APJCP

Status: data only, 1 dataset cited

[23259] doi:10.3389/fnins.2024.1376288 [paper, repository]

Consistent genes associated with structural changes in clinical Alzheimer's disease spectrum.

Journal: Frontiers in neuroscience

Authors' code: BMHLab/AHBAprocessing (no license)

Status: code verified, 386 files readable, 2 matches

[23260] doi:10.3390/biomimetics9110667 [paper, data]

Mimicking Marker Spread After Disruption of the Blood-Brain Barrier with a Collagen-Based Hydrogel Phantom.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

[23261] doi:10.7554/elife.92854 [paper, repository]

Synaptic interactions between stellate cells and parvalbumin interneurons in layer 2 of the medial entorhinal cortex are organized at the scale of grid cell clusters.

Journal: eLife

Authors' code: datashare.ed.ac.uk/handle/10283 (no license)

Status: code verified

[23262] doi:10.7554/elife.98096 [paper, data]

FGF8-mediated gene regulation affects regional identity in human cerebral organoids.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 31 October 2024 (15 papers)

[23263] doi:10.1038/s41467-024-53743-y [paper, repository]

Why experimental variation in neuroimaging should be embraced.

Journal: Nature communications

Authors' code: Zenodo 5027708 (other-open), verificarlo/fuzzy (Apache-2.0)

Status: code verified, 60 files readable

[23264] doi:10.1038/s41514-024-00171-3 [paper, repository]

Mapping computational cognitive profiles of aging to dissociable brain and sociodemographic factors.

Journal: npj aging

Authors' code: aleyaamarzuki/cognitive-profiling-aging (no license)

Status: code verified, 12 files readable, 20 matches

[23265] doi:10.1038/s41593-024-01788-z [paper, repository]

Integration across biophysical scales identifies molecular and cellular correlates of person-to-person variability in human brain connectivity.

Journal: Nature neuroscience

Authors' code: well.ox.ac.uk/~wrayner/tools (no license)

Status: dead link

[23266] doi:10.1186/s12888-024-06127-x [paper, data]

Patient iPSC-derived neural progenitor cells display aberrant cell cycle control, p53, and DNA damage response protein expression in schizophrenia.

Journal: BMC psychiatry

Status: data only, 3 datasets cited

[23267] doi:10.1186/s13073-024-01400-w [paper, data]

Circular RNA landscape in extracellular vesicles from human biofluids.

Journal: Genome medicine

Status: data only, 2 datasets cited

[23268] doi:10.1371/journal.pbio.3002828 [paper, repository]

A multichannel electrophysiological approach to noninvasively and precisely record human spinal cord activity.

Journal: PLoS biology

Authors' code: eippertlab/spinal_sep1 (MIT), Zenodo 13383050 (CC-BY-4.0), eippertlab/spinal_sep2 (MIT), Zenodo 13383046 (CC-BY-4.0), eippertlab/spinal-lep1 (MIT), Zenodo 13383056 (CC-BY-4.0)

Status: code verified, 370 files readable, 26 matches

[23269] doi:10.1371/journal.pcbi.1012097 [paper, repository]

A Computational Framework for Understanding the Impact of Prior Experiences on Pain Perception and Neuropathic Pain.

Journal: PLoS computational biology

Authors' code: Zenodo 10960405 (CC-BY-4.0)

Status: code verified, 18 files readable, 13 matches

[23270] doi:10.1371/journal.pcbi.1012510 [paper, repository]

Structural influences on synaptic plasticity: The role of presynaptic connectivity in the emergence of E/I co-tuning.

Journal: PLoS computational biology

Authors' code: MGiannakakis/Network (no license)

Status: dead link

[23271] doi:10.3389/fnhum.2024.1464431 [paper, repository]

Multi-source domain adaptation for EEG emotion recognition based on inter-domain sample hybridization.

Journal: Frontiers in human neuroscience

Authors' code: Xitsuka/SH-MDA (no license)

Status: code verified, 7 files readable

[23272] doi:10.3389/fnmol.2024.1386239 [paper, data]

Spatially resolved transcriptomic signatures of hippocampal subregions and <i>Arc</i>-expressing ensembles in active place avoidance memory.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[23273] doi:10.3390/s24217016 [paper, data]

Study of the Brain Functional Connectivity Processes During Multi-Movement States of the Lower Limbs.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[23274] doi:10.3390/v16111712 [paper]

RNA-Seq Reveals Transcriptome Changes Following Zika Virus Infection in Fetal Brains in &lt;i&gt;c-Flip&lt;/i&gt; Knockdown Mice.

Journal: Viruses

Status: data only

[23275] doi:10.34133/research.0521 [paper, repository]

Coordinated Interactions between the Hippocampus and Retrosplenial Cortex in Spatial Memory.

Journal: Research (Washington, D.C.)

Authors' code: buzsakilab/TheStateEditor (no license)

Status: code verified, 6 files readable

[23276] doi:10.7554/elife.87258 [paper, data]

A Pvr-AP-1-Mmp1 signaling pathway is activated in astrocytes upon traumatic brain injury.

Journal: eLife

Status: data only, 1 dataset cited

[23277] doi:10.7554/elife.96942 [paper, data]

Formin-like 1β phosphorylation at S1086 is necessary for secretory polarized traffic of exosomes at the immune synapse in Jurkat T lymphocytes.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 30 October 2024 (31 papers, 19 on this page)

[23278] doi:10.1002/1873-3468.15047 [paper, data]

Cryo-EM structures of the zinc transporters ZnT3 and ZnT4 provide insights into their transport mechanisms.

Journal: FEBS letters

Status: data only, 2 datasets cited

[23279] doi:10.1007/s00401-024-02818-7 [paper, data]

Effects of brain microRNAs in cognitive trajectory and Alzheimer's disease.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[23280] doi:10.1007/s11357-024-01392-w [paper]

White matter integrity and motor function: a link between cerebral myelination and longitudinal changes in gait speed in aging.

Journal: GeroScience

Status: code on request

[23281] doi:10.1007/s11357-024-01404-9 [paper, data]

Aging disrupts blood-brain and blood-spinal cord barrier homeostasis, but does not increase paracellular permeability.

Journal: GeroScience

Status: data only, 1 dataset cited

[23282] doi:10.1016/j.dcn.2024.101470 [paper, data]

Encoding models for developmental cognitive computational neuroscience: Promise, challenges, and potential.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[23283] doi:10.1016/j.nicl.2024.103698 [paper, repository]

Spectral peak analysis and intrinsic neural timescales as markers for the state of consciousness.

Journal: NeuroImage. Clinical

Authors' code: georgnorthoff.com/code (no license)

Status: code verified

[23284] doi:10.1016/j.xcrm.2024.101806 [paper, data]

Lnc-H19-derived protein shapes the immunosuppressive microenvironment of glioblastoma.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[23285] doi:10.1038/s41467-024-53147-y [paper, repository]

A large-scale examination of inductive biases shaping high-level visual representation in brains and machines.

Journal: Nature communications

Authors' code: cvnlab/GSN (BSD-3-Clause), ColinConwell/DeepNSD (GPL-3.0)

Status: code verified, 117 files readable, 25 matches

[23286] doi:10.1038/s41531-024-00816-w [paper, repository]

α-synuclein overexpression and the microbiome shape the gut and brain metabolome in mice.

Journal: NPJ Parkinson's disease

Authors' code: Zenodo 10841426 (CC-BY-4.0), Zenodo 7183678 (CC-BY-4.0)

Status: code verified

[23287] doi:10.1038/s41586-024-08108-2 [paper, repository]

Leptin-activated hypothalamic BNC2 neurons acutely suppress food intake.

Journal: Nature

Authors' code: yuqiyuqitan/BNC2 (MIT)

Status: code verified, 4 files readable, 4 matches

[23288] doi:10.1038/s41586-024-08114-4 [paper, repository]

Cretaceous bird from Brazil informs the evolution of the avian skull and brain.

Journal: Nature

Authors' code: Zenodo 3929193 (other-open), Zenodo 10696014 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[23289] doi:10.1038/s41586-024-08279-y [paper, data]

Endogenous self-peptides guard immune privilege of the central nervous system.

Journal: Nature

Status: code on request, 1 dataset cited

[23290] doi:10.1038/s41597-024-04025-1 [paper, repository]

The mRNA and protein datasets after cold stress of red tilapia.

Journal: Scientific data

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[23291] doi:10.1038/s41598-024-75952-7 [paper, data]

Exploring the role of different cell types on cortical folding in the developing human brain through computational modeling.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23292] doi:10.1038/s42003-024-06281-8 [paper, repository]

Consensus tissue domain detection in spatial omics data using multiplex image labeling with regional morphology (MILWRM).

Journal: Communications biology

Authors' code: LieberInstitute/HumanPilot (Artistic-2.0), Ken-Lau-Lab/MILWRM (MIT)

Status: code verified, 90 files readable, 2 matches

[23293] doi:10.1073/pnas.2405152121 [paper, data]

Pan-ErbB inhibition impairs cognition via disrupting myelination and aerobic glycolysis in oligodendrocytes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[23294] doi:10.1098/rsos.240839 [paper, repository]

Astrocytes induce desynchronization and reduce predictability in neuron-astrocyte networks cultured on microelectrode arrays.

Journal: Royal Society open science

Authors' code: barbara-ge/NeuronAstrocyteCounter (GPL-3.0), narayanps/NolinearTimeSeriesAnalysis (gnu), barbara-ge/WaveformAnalysis (GPL-3.0), barbara-ge/MEA_signal_predictor (GPL-3.0)

Status: code verified, 24 files readable, 3 matches

[23295] doi:10.1126/sciadv.ado4103 [paper, data]

Noninvasive modulation of the hippocampal-entorhinal complex during spatial navigation in humans.

Journal: Science advances

Status: data only, 1 dataset cited

[23296] doi:10.1162/imag_a_00339 [paper, data]

Personalized neuroimaging reveals the impact of children's interests on language processing in the brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.