Every paper, by date: page 105

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 105 of 200: 30 October 2024 to 21 October 2024.

Wednesday, 30 October 2024 (31 papers, 12 on this page)

[23297] doi:10.1186/s13023-024-03392-7 [paper, data]

Epidemiological characterization of rare diseases in Brazil: A retrospective study of the Brazilian Rare Diseases Network.

Journal: Orphanet journal of rare diseases

Status: data only, 1 dataset cited

[23298] doi:10.1186/s13062-024-00541-7 [paper, data]

Characterization of gut microbiota dynamics in an Alzheimer's disease mouse model through clade-specific marker-based analysis of shotgun metagenomic data.

Journal: Biology direct

Status: data only, 6 datasets cited

[23299] doi:10.1186/s40537-024-01023-3 [paper]

Integrating Big Data, Artificial Intelligence, and motion analysis for emerging precision medicine applications in Parkinson's Disease.

Journal: Journal of big data

Status: code on request

[23300] doi:10.1186/s42234-024-00157-2 [paper, repository]

Machine learning-optimized non-invasive brain stimulation and treatment response classification for major depression.

Journal: Bioelectronic medicine

Authors' code: aa14av/BioElecMed_Albizu_2024 (GPL-3.0)

Status: code verified, 27 files readable, 5 matches

[23301] doi:10.1242/jcs.261950 [paper, repository]

Gut Analysis Toolbox - automating quantitative analysis of enteric neurons.

Journal: Journal of cell science

Authors' code: clEsperanto/pyclesperanto_prototype (BSD-3-Clause), KLab-JHU/COUNTEN (no license), pr4deepr/COUNTEN (no license), pr4deepr/gutanalysistoolbox (BSD-3-Clause), hci-unihd/plant-seg-tools (MIT)

Status: code verified, 170 files readable, 3 matches

[23302] doi:10.1371/journal.pcbi.1012532 [paper, repository]

Learning probability distributions of sensory inputs with Monte Carlo predictive coding.

Journal: PLoS computational biology

Authors' code: gaspardol/montecarlopredictivecoding (no license)

Status: code verified, 24 files readable, 7 matches

[23303] doi:10.1523/eneuro.0308-24.2024 [paper, repository]

GABA-Induced Seizure-Like Events Caused by Multi-ionic Interactive Dynamics.

Journal: eNeuro

Authors' code: ICANPB/Chloride-and-epilepsy (no license)

Status: code verified, 6 files readable

[23304] doi:10.1523/jneurosci.0142-24.2024 [paper, repository]

Neurons Underlying Aggression-Like Actions That Are Shared by Both Males and Females in <i>Drosophila</i>.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: bhandawatlab/DMDOptogeneticsExperiments (no license), bhandawatlab/2023_CL062_Tao_Bhandawat (GPL-3.0)

Status: code verified, 168 files readable, 22 matches

[23305] doi:10.3390/ijms252111659 [paper, data]

Identification of Genes Associated with Familial Focal Segmental Glomerulosclerosis Through Transcriptomics and In Silico Analysis, Including <i>RPL27</i>, <i>TUBB6</i>, and <i>PFDN5</i>.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[23306] doi:10.7554/elife.88414 [paper, data]

Spatial transcriptomics of meningeal inflammation reveals inflammatory gene signatures in adjacent brain parenchyma.

Journal: eLife

Status: data only, 1 dataset cited

[23307] doi:10.7554/elife.90976 [paper, data]

Transformation of valence signaling in a mouse striatopallidal circuit.

Journal: eLife

Status: data only, 1 dataset cited

[23308] doi:10.7717/peerj-cs.2394 [paper, repository]

Auditory-GAN: deep learning framework for improved auditory spatial attention detection.

Journal: PeerJ. Computer science

Authors' code: Zenodo 13334755 (CC-BY-4.0), supp:PMC11623022/peerj-cs-10-2394-s001.py (no license)

Status: code verified, 3 files readable, 2 matches

Tuesday, 29 October 2024 (26 papers)

[23309] doi:10.1002/advs.202405246 [paper, repository]

Seizure Sources Can Be Imaged from Scalp EEG by Means of Biophysically Constrained Deep Neural Networks.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: bfinl/DeepSIF (BSD-3-Clause)

Status: code verified, 26 files readable, 10 matches

[23310] doi:10.1002/alz.14326 [paper, repository]

Latent change-on-change between amyloid accumulation and cognitive decline.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: klinger-hm/lcsm (no license)

Status: code verified, 8 files readable

[23311] doi:10.1002/dad2.70032 [paper, repository]

Marital dissolution and cognition: The mediating effect of Aβ neuropathology.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: Wolfson-PNU-QMUL/Marital_Dissolution_ADNI_Project (no license)

Status: code verified, 3 files readable, 5 matches

[23312] doi:10.1016/j.dcn.2024.101469 [paper, repository]

Complex emotion processing and early life adversity in the Healthy Brain Network sample.

Journal: Developmental cognitive neuroscience

Authors' code: catcamacho/hbn_analysis (no license)

Status: code verified, 15 files readable, 3 matches

[23313] doi:10.1016/j.nicl.2024.103697 [paper, repository]

The brain topological alterations in the structural connectome and correlations with clinical characteristics in type 1 narcolepsy.

Journal: NeuroImage. Clinical

Authors' code: jbrown81/umcp (no license)

Status: code verified, 9 files readable, 4 matches

[23314] doi:10.1038/s41380-024-02795-z [paper]

Integrity of the circadian clock determines regularity of high-frequency and diurnal LFP rhythms within and between brain areas.

Journal: Molecular psychiatry

Status: code on request

[23315] doi:10.1038/s41598-024-74985-2 [paper, repository]

A method for in silico exploration of potential glioblastoma multiforme attractors using single-cell RNA sequencing.

Journal: Scientific reports

Authors' code: marcosgvjunior/Biomarker-Guided-scRNA-Seq-Cancer-Attractor-Analysis (CC-BY-NC-SA-4.0)

Status: code verified, 3 files readable, 4 matches

[23316] doi:10.1038/s41598-024-76117-2 [paper, repository]

Correlates of sleep variability in a mobile EEG-based volunteer study.

Journal: Scientific reports

Authors' code: OSF crfw3 (no license)

Status: code verified, 1 file readable

[23317] doi:10.1038/s41598-024-76649-7 [paper, data]

Author Correction: Neural signatures of motor imagery for a supernumerary thumb in VR: an EEG analysis.

Journal: Scientific reports

Status: data only, 2 datasets cited

[23318] doi:10.1038/s41598-024-77876-8 [paper, data]

Fusing convolutional learning and attention-based Bi-LSTM networks for early Alzheimer's diagnosis from EEG signals towards IoMT.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23319] doi:10.1073/pnas.2313304121 [paper, data]

Differential neural mechanisms underlie cortical gating of visual spatial attention mediated by alpha-band oscillations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[23320] doi:10.1073/pnas.2405886121 [paper, data]

Pathogenic mechanism and therapeutic intervention of impaired N&lt;sup&gt;7&lt;/sup&gt;-methylguanosine (m&lt;sup&gt;7&lt;/sup&gt;G) tRNA modification.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[23321] doi:10.1101/2024.10.29.619403 [paper, repository]

Mapping Visual Contrast Sensitivity and Vision Loss Across the Visual Field with Model-Based fMRI

Journal: bioRxiv (preprint)

Authors' code: HugoCWB/ChowWingBomEtAl_2025_eLife (MIT), HugoCWB/AdjustEccTool (MIT), Zenodo 18770065 (GPL-3.0)

Status: code verified, 10 files readable, 9 matches

[23322] doi:10.1101/gr.278843.123 [paper, repository]

Theoretical framework for the difference of two negative binomial distributions and its application in comparative analysis of sequencing data.

Journal: Genome research

Authors' code: chenyongrowan/DEGage (MIT), chenyongrowan/DOTNB (MIT), rpubs.com/aliciaprowan/1202999 (no license)

Status: code verified, 25 files readable, 1 match

[23323] doi:10.1101/gr.279363.124 [paper, repository]

Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level.

Journal: Genome research

Authors' code: bsml320/scARE (no license)

Status: code verified, 12 files readable, 18 matches

[23324] doi:10.1111/ejn.16581 [paper, data]

Neural encoding of melodic expectations in music across EEG frequency bands.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[23325] doi:10.1117/1.nph.11.4.045007 [paper, repository]

DeepVID v2: self-supervised denoising with decoupled spatiotemporal enhancement for low-photon voltage imaging.

Journal: Neurophotonics

Authors' code: bu-cisl/DeepVIDv2 (GPL-3.0)

Status: code verified, 11 files readable, 1 match

[23326] doi:10.1186/s13040-024-00401-0 [paper]

Priority-Elastic net for binary disease outcome prediction based on multi-omics data.

Journal: BioData mining

Status: code on request

[23327] doi:10.1186/s13293-024-00659-3 [paper, data]

Human-specific protein-coding and lncRNA genes cast sex-biased genes in the brain and their relationships with brain diseases.

Journal: Biology of sex differences

Status: data only, 2 datasets cited

[23328] doi:10.1186/s40001-024-02119-5 [paper]

Diagnostic and prognostic significance of tetraspanin 6 and its role in facilitating glioma progression.

Journal: European journal of medical research

Status: data only

[23329] doi:10.1186/s40035-024-00445-6 [paper, data]

TRPV1 alleviates APOE4-dependent microglial antigen presentation and T cell infiltration in Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[23330] doi:10.1371/journal.pone.0299752 [paper, data]

Wavelet and time-based cerebral autoregulation analysis using diffuse correlation spectroscopy on adults undergoing extracorporeal membrane oxygenation therapy.

Journal: PloS one

Status: data only, 1 dataset cited

[23331] doi:10.3389/fonc.2024.1417208 [paper]

The peritumoral edema index and related mechanisms influence the prognosis of GBM patients.

Journal: Frontiers in oncology

Status: data only

[23332] doi:10.3390/brainsci14111087 [paper, data]

Single-Channel Sleep EEG Classification Method Based on LSTM and Hidden Markov Model.

Journal: Brain sciences

Status: data only, 1 dataset cited

[23333] doi:10.3390/brainsci14111090 [paper, repository]

Seizure Onset Zone Detection Based on Convolutional Neural Networks and EEG Signals.

Journal: Brain sciences

Authors' code: kuirh/Seizure-Onset-Zones-Detection-Based-on-Convolutional-Neural-Networks-and-EEG-Signals (no license)

Status: code verified, 5 files readable

[23334] doi:10.7554/elife.87780 [paper, data]

Linking the evolution of two prefrontal brain regions to social and foraging challenges in primates.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 28 October 2024 (39 papers)

[23335] doi:10.1007/s10462-024-10943-8 [paper, data]

A framework for measuring the training efficiency of a neural architecture.

Journal: Artificial intelligence review

Status: data only, 2 datasets cited

[23336] doi:10.1016/j.dib.2024.111065 [paper, data]

Auditory evoked potential electroencephalography-biometric dataset.

Journal: Data in brief

Status: data only, 2 datasets cited

[23337] doi:10.1016/j.isci.2024.111273 [paper, repository]

Deep learning-based hyperspectral image correction and unmixing for brain tumor surgery.

Journal: iScience

Authors' code: dgblack/acunet_glioma (MIT)

Status: code verified, 10 files readable, 2 matches

[23338] doi:10.1016/j.isci.2024.111275 [paper, repository]

Communication subspace dynamics of the canonical olfactory pathway.

Journal: iScience

Authors' code: joaqgonzar/CS_OB-PCx (no license), joaqgonzar/Gamma_Oscillations_PCx (GPL-3.0)

Status: code verified, 21 files readable, 6 matches

[23339] doi:10.1016/j.isci.2024.111276 [paper]

The first interneuron of the mouse visual system is tailored to the natural environment through morphology and electrical coupling.

Journal: iScience

Status: code on request

[23340] doi:10.1016/j.isci.2024.111278 [paper]

Pleiotropic tumor suppressive functions of PTEN missense mutations during gliomagenesis.

Journal: iScience

Status: code on request

[23341] doi:10.1016/j.isci.2024.111285 [paper, repository]

Circuit mechanism underlying fragmented sleep and memory deficits in 16p11.2 deletion mouse model of autism.

Journal: iScience

Authors' code: tortugar/Lab (no license)

Status: code verified, 33 files readable, 8 matches

[23342] doi:10.1016/j.xcrm.2024.101796 [paper, data]

Effect of remote ischemic preconditioning on cerebral circulation time in severe carotid artery stenosis: Results from the RIC-CCT trial.

Journal: Cell reports. Medicine

Status: data only, 2 datasets cited

[23343] doi:10.1016/j.xcrm.2024.101798 [paper, data]

Bifidobacteria with indole-3-lactic acid-producing capacity exhibit psychobiotic potential via reducing neuroinflammation.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[23344] doi:10.1038/s41398-024-03158-6 [paper]

Understanding novel neuromodulation pathways in tDCS: brain stem recordings in rats during trigeminal nerve direct current stimulation.

Journal: Translational psychiatry

Status: code on request

[23345] doi:10.1038/s41419-024-07152-0 [paper, data]

The link between amyloid β and ferroptosis pathway in Alzheimer's disease progression.

Journal: Cell death & disease

Status: code on request, 1 dataset cited

[23346] doi:10.1038/s41467-024-53610-w [paper, repository]

Ancestral neural circuits potentiate the origin of a female sexual behavior in Drosophila.

Journal: Nature communications

Authors' code: JaneliaSciComp/tempo (BSD-3-Clause)

Status: code verified, 82 files readable, 1 match

[23347] doi:10.1038/s41467-024-53690-8 [paper, repository]

Temporal dynamics of nucleus accumbens neurons in male mice during reward seeking.

Journal: Nature communications

Authors' code: codeocean:0290769 (no license)

Status: code found, still to be checked

[23348] doi:10.1038/s41522-024-00582-w [paper, data]

Gut microbiota dysbiosis-mediated ceramides elevation contributes to corticosterone-induced depression by impairing mitochondrial function.

Journal: NPJ biofilms and microbiomes

Status: data only, 1 dataset cited

[23349] doi:10.1038/s41598-024-73755-4 [paper, repository]

Compact convolutional transformer for subject-independent motor imagery EEG-based BCIs.

Journal: Scientific reports

Authors' code: aikesha/EEGCCT (MIT)

Status: code verified, 14 files readable, 3 matches

[23350] doi:10.1038/s41598-024-75427-9 [paper, repository]

Aesthetic evaluation of body movements shaped by embodied and arts experience: Insights from behaviour and fNIRS.

Journal: Scientific reports

Authors' code: OSF cndfg (no license), OSF vfsn2 (no license), OSF jfv43 (no license)

Status: code verified, 9 files readable, 2 matches

[23351] doi:10.1038/s41598-024-76148-9 [paper, repository]

A robust deep learning approach for identification of RNA 5-methyluridine sites.

Journal: Scientific reports

Authors' code: Shazzad-Shaon3404/m5U_detection- (no license)

Status: empty repository, 1 file readable

[23352] doi:10.1038/s42255-024-01155-z [paper, data]

Impaired striatal glutathione-ascorbate metabolism induces transient dopamine increase and motor dysfunction.

Journal: Nature metabolism

Status: data only, 1 dataset cited

[23353] doi:10.1038/s44321-024-00156-5 [paper]

Ependymal cell lineage reprogramming as a potential therapeutic intervention for hydrocephalus.

Journal: EMBO molecular medicine

Status: data only

[23354] doi:10.1073/pnas.2403325121 [paper, repository]

Learning-dependent gating of hippocampal inputs by frontal interneurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: neurodroid/haussmeister (no license), neurodroid/ZH2024 (no license), Zenodo 13940195 (CC-BY-4.0), Zenodo 13940218 (CC-BY-4.0)

Status: code verified, 42 files readable, 3 matches

[23355] doi:10.1111/joa.14167 [paper, data]

A road map to manual segmentation of cerebral structures.

Journal: Journal of anatomy

Status: data only, 1 dataset cited

[23356] doi:10.1159/000542276 [paper, data]

Ex vivo Magnetic Resonance Imaging of the Human Fetal Brain.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[23357] doi:10.1162/imag_a_00326 [paper]

Strategies for motion- and respiration-robust estimation of fMRI intrinsic neural timescales.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[23358] doi:10.1162/imag_a_00333 [paper, repository]

A comparative analysis of the sensitivity and BOLD contamination of the VASO response at 3 Tesla: ME-DEPICTING vs. ME-EPI readouts.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF cg7sp (no license)

Status: code verified

[23359] doi:10.1162/imag_a_00336 [paper, repository]

Exploring distinct and joint contributions of the locus coeruleus and the substantia nigra/ventral tegmental area complex to reward and valence processing using high-resolution fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: juliemaehall/LC_VTA_Reward_Valence (GPL-3.0)

Status: empty repository, 2 files readable

[23360] doi:10.1162/imag_a_00341 [paper, repository]

Processing the fine-grained features of tactile textures involves the primary somatosensory cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Espositogiulia/Vibrotactile-texture-experiment (no license)

Status: code verified, 11 files readable, 2 matches

[23361] doi:10.1371/journal.pbio.3002863 [paper, data]

Object color knowledge representation occurs in the macaque brain despite the absence of a developed language system.

Journal: PLoS biology

Status: data only, 1 dataset cited

[23362] doi:10.1371/journal.pcbi.1012553 [paper, repository]

Competitive plasticity to reduce the energetic costs of learning.

Journal: PLoS computational biology

Authors' code: vanrossumlab/frugal_24 (no license)

Status: code verified, 3 files readable, 1 match

[23363] doi:10.1371/journal.pcbi.1012554 [paper, repository]

Reinforcement learning when your life depends on it: A neuro-economic theory of learning.

Journal: PLoS computational biology

Authors' code: vanrossumlab/neuroeconomicRL (no license)

Status: code verified, 9 files readable, 1 match

[23364] doi:10.1371/journal.pntd.0012635 [paper, data]

Intracranial inoculation rapidly induces Nipah virus encephalitis in Syrian hamsters.

Journal: PLoS neglected tropical diseases

Status: data only, 1 dataset cited

[23365] doi:10.1371/journal.pone.0309057 [paper, data]

Interaction of 4-ethyl phenyl sulfate with bovine serum albumin: Experimental and molecular docking studies.

Journal: PloS one

Status: data only, 1 dataset cited

[23366] doi:10.3389/fgene.2024.1429306 [paper, repository]

TargetCall: eliminating the wasted computation in basecalling via pre-basecalling filtering.

Journal: Frontiers in genetics

Authors' code: CMU-SAFARI/TargetCall (MIT)

Status: code verified, 74 files readable, 2 matches

[23367] doi:10.3390/bioengineering11111076 [paper, data]

MRI-Driven Alzheimer's Disease Diagnosis Using Deep Network Fusion and Optimal Selection of Feature.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[23368] doi:10.3390/ijms252111570 [paper, data]

Prenatal Opioid and Alcohol Exposures: Association with Altered Placental Serotonin Transporter Structure and/or Expression.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[23369] doi:10.3390/s24216913 [paper, repository]

ETFT: Equiangular Tight Frame Transformer for Imbalanced Semantic Segmentation.

Journal: Sensors (Basel, Switzerland)

Authors' code: seonggyuny/ETFT (MIT)

Status: code verified, 40 files readable, 4 matches

[23370] doi:10.3390/s24216919 [paper, data]

Neural Surfel Reconstruction: Addressing Loop Closure Challenges in Large-Scale 3D Neural Scene Mapping.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[23371] doi:10.7150/thno.99323 [paper, data]

Circular RNA SCMH1 suppresses KMO expression to inhibit mitophagy and promote functional recovery following stroke.

Journal: Theranostics

Status: data only, 1 dataset cited

[23372] doi:10.7554/elife.96576 [paper, repository]

Regional response to light illuminance across the human hypothalamus.

Journal: eLife

Authors' code: gitlab.uliege.be/cyclotronresearchcentre/public/fasst/hypothalamus_light_7tfmri (other)

Status: code verified, 23 files readable, 7 matches

[23373] doi:10.7554/elife.97088 [paper, repository]

Development of a Marmoset Apparatus for Automated Pulling to study cooperative behaviors.

Journal: eLife

Authors' code: changlabneuro/cooperative-pulling-task (no license)

Status: code verified, 48 files readable, 2 matches

Sunday, 27 October 2024 (5 papers)

[23374] doi:10.1002/1878-0261.13756 [paper, data]

Malformin C preferentially kills glioblastoma stem-like cells via concerted induction of proteotoxic stress and autophagic flux blockade.

Journal: Molecular oncology

Status: data only, 1 dataset cited

[23375] doi:10.1002/mrm.30359 [paper, repository]

Deep learning-based whole-brain B&lt;sub&gt;1&lt;/sub&gt; &lt;sup&gt;+&lt;/sup&gt;-mapping at 7T.

Journal: Magnetic resonance in medicine

Authors' code: felixkrueger90/ComplexB1 (no license)

Status: empty repository

[23376] doi:10.1038/s41380-024-02797-x [paper, data]

Highly demarcated structural alterations in the brain and impaired social incentive learning in Tbx1 heterozygous mice.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[23377] doi:10.1186/s12974-024-03267-5 [paper, data]

Fenebrutinib, a Bruton's tyrosine kinase inhibitor, blocks distinct human microglial signaling pathways.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[23378] doi:10.3390/bs14111001 [paper, data]

Do Progressive Intensities of Transcranial Direct Current Stimulation with and Without 40 Hz Binaural Beats Change Pre-Frontal Cortex Hemodynamics? A Randomized Controlled Trial.

Journal: Behavioral sciences (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 26 October 2024 (14 papers)

[23379] doi:10.1038/s41467-024-53665-9 [paper, repository]

Emerging many-to-one weighted mapping in hippocampus-amygdala network underlies memory formation.

Journal: Nature communications

Authors' code: DVWangLab (no license)

Status: code verified

[23380] doi:10.1038/s41531-024-00812-0 [paper]

Randomized crossover trial on motor and non-motor outcome of directional deep brain stimulation in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[23381] doi:10.1038/s41598-024-76983-w [paper, repository]

Neural fields for rapid aircraft aerodynamics simulations.

Journal: Scientific reports

Authors' code: gitlab.isae-supaero.fr/gi.catalani/aero-nepf (no license)

Status: code found, still to be checked

[23382] doi:10.1038/s42003-024-07084-7 [paper, repository]

Endogenous opioid receptor system mediates costly altruism in the human brain.

Journal: Communications biology

Authors' code: ChenUTU/Endogenous-opioid-receptor-system-mediates-costly-altruism-in-the-human-brain (no license)

Status: empty repository

[23383] doi:10.1038/s42003-024-07088-3 [paper, repository]

Comparison of whole-brain task-modulated functional connectivity methods for fMRI task connectomics.

Journal: Communications biology

Authors' code: IHB-IBR-department/TMFC_simulations (GPL-3.0), IHB-IBR-department/TMFC_simulator (no license), IHB-IBR-department/TMFC_toolbox (GPL-3.0), IHB-IBR-department/BOLD_deconvolution (GPL-3.0), neurolib-dev/neurolib (MIT), neurolabusc/fMRI-Simulator (BSD-2-Clause)

Status: code verified, 351 files readable, 27 matches

[23384] doi:10.1080/15592294.2024.2417158 [paper, repository]

MK-801-exposure induces increased translation efficiency and mRNA hyperacetylation of &lt;i&gt;Grin2a&lt;/i&gt; in the mouse prefrontal cortex.

Journal: Epigenetics

Authors' code: Ye-lab726/XueLT (no license)

Status: empty repository, 1 file readable

[23385] doi:10.1101/2024.10.25.620252 [paper, repository]

Uncovering the embodied dimension of the wandering mind

Journal: bioRxiv (preprint)

Authors' code: embodied-computation-group/body_wandering_CCA (no license)

Status: code verified, 126 files readable, 20 matches

[23386] doi:10.1111/bjop.12743 [paper, data]

Inter-brain synchrony is associated with greater shared identity within naturalistic conversational pairs.

Journal: British journal of psychology (London, England : 1953)

Status: data only, 1 dataset cited

[23387] doi:10.1136/jitc-2024-009449 [paper, data]

Inhibitory Fcγ receptor deletion enhances CD8 T cell stemness increasing anti-PD-1 therapy responsiveness against glioblastoma.

Journal: Journal for immunotherapy of cancer

Status: data only, 1 dataset cited

[23388] doi:10.1186/s13195-024-01596-4 [paper, data]

Dissecting neural correlates of theory of mind and executive functions in behavioral variant frontotemporal dementia.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[23389] doi:10.1186/s40708-024-00239-6 [paper, repository]

Advancing EEG prediction with deep learning and uncertainty estimation.

Journal: Brain informatics

Authors' code: hatlestad-hall/prep-childmind-eeg (MIT), matstveter/scripts (no license), matstveter/sex_pred (no license)

Status: code verified, 33 files readable, 8 matches

[23390] doi:10.3390/bioengineering11111071 [paper, repository]

Improving EEG Forward Modeling Using High-Resolution Five-Layer BEM-FMM Head Models: Effect on Source Reconstruction Accuracy.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: guillermo-nponasso/EEG-BEMFMM-5Layer (BSD-2-Clause)

Status: code verified, 564 files readable, 9 matches

[23391] doi:10.3390/cancers16213614 [paper, repository]

Radiomics-Based Machine Learning with Natural Gradient Boosting for Continuous Survival Prediction in Glioblastoma.

Journal: Cancers

Authors' code: mertkarabacak/GBM-Radiomics-Survival (no license)

Status: dead link

[23392] doi:10.3758/s13414-024-02975-7 [paper, data]

Crossmodal correspondence of elevation/pitch and size/pitch is driven by real-world features.

Journal: Attention, perception & psychophysics

Status: data only, 1 dataset cited

Friday, 25 October 2024 (24 papers)

[23393] doi:10.1007/s00018-024-05475-x [paper, data]

Human TRPV1 is an efficient thermogenetic actuator for chronic neuromodulation.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[23394] doi:10.1016/j.bpsc.2024.10.002 [paper, repository]

Functional Brain Connectivity Predictors of Prospective Substance Use Initiation and Their Environmental Correlates.

Journal: Biological psychiatry. Cognitive neuroscience and neuroimaging

Authors' code: okardan/future_SUI_rsFC (no license), nda.nih.gov/study.html (no license)

Status: code verified, 7 files readable, 1 match

[23395] doi:10.1016/j.cub.2024.09.083 [paper, repository]

Category boundaries modulate memory in a place-cell-like manner.

Journal: Current biology : CB

Authors' code: Zenodo 13969607 (CC-BY-4.0), Zenodo 13969606 (CC-BY-4.0)

Status: code verified, 34 files readable, 4 matches

[23396] doi:10.1038/s41434-024-00493-7 [paper, repository]

Chemogenetics with PSAM&lt;sup&gt;4&lt;/sup&gt;-GlyR decreases excitability and epileptiform activity in epileptic hippocampus.

Journal: Gene therapy

Authors' code: KM-Lab/Electrographic-Seizure-Analyzer (GPL-3.0)

Status: code verified, 10 files readable, 1 match

[23397] doi:10.1038/s41467-024-53522-9 [paper, repository]

Isolated theta waves originating from the midline thalamus trigger memory reactivation during NREM sleep in mice.

Journal: Nature communications

Authors' code: hechaochongqing/NC-RE-MEC-matlab-code-2024 (no license)

Status: code verified, 1 file readable

[23398] doi:10.1038/s41467-024-53545-2 [paper, data]

Mouse enteric neurons control intestinal plasmacytoid dendritic cell function via serotonin-HTR7 signaling.

Journal: Nature communications

Status: data only, 1 dataset cited

[23399] doi:10.1038/s41467-024-53550-5 [paper, repository]

Self-supervised learning for accurately modelling hierarchical evolutionary patterns of cerebrovasculature.

Journal: Nature communications

Authors' code: YingChen7/CereVessSeg_with_CereVessPro (Apache-2.0), YingChen7/HQA_Cerebrovasculature (Apache-2.0), Zenodo 13819433 (CC-BY-4.0)

Status: code verified, 604 files readable, 13 matches

[23400] doi:10.1038/s41598-024-74732-7 [paper, repository]

Functional diversities within neurons and astrocytes in the adult rat auditory cortex revealed by single-nucleus RNA sequencing.

Journal: Scientific reports

Authors' code: Zenodo 13620101 (CC-BY-4.0), magic-analytics/aysegul_snrna_auditorycortex (no license)

Status: code verified, 4 files readable, 6 matches

[23401] doi:10.1038/s41598-024-77541-0 [paper, data]

A homozygous variant in ARHGAP39 is associated with lethal cerebellar vermis hypoplasia in a consanguineous Saudi family.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23402] doi:10.1038/s42003-024-07096-3 [paper, repository]

Temporal coherence shapes cortical responses to speech mixtures in a ferret cocktail party.

Journal: Communications biology

Authors' code: JHU-LCAP/EMMA-Ferret (MIT)

Status: code verified, 29 files readable, 2 matches

[23403] doi:10.1111/jnc.16252 [paper]

Zinc signaling controls astrocyte-dependent synapse modulation via the PAF receptor pathway.

Journal: Journal of neurochemistry

Status: code on request

[23404] doi:10.1126/sciadv.adn2776 [paper, repository]

Functional PET/MRI reveals active inhibition of neuronal activity during optogenetic activation of the nigrostriatal pathway.

Journal: Science advances

Authors' code: doi:10.5061/dryad.1vhhmgr2r (no license), Zenodo 11522241 (GPL-3.0)

Status: code verified

[23405] doi:10.1126/sciadv.adn7573 [paper, data]

Mice lacking acid-sensing ion channel 2 in the medial prefrontal cortex exhibit social dominance.

Journal: Science advances

Status: data only, 1 dataset cited

[23406] doi:10.1161/jaha.124.035880 [paper, repository]

Structural Covariance Networks in the Fetal Brain Reveal Altered Neurodevelopment for Specific Subtypes of Congenital Heart Disease.

Journal: Journal of the American Heart Association

Authors' code: hub.docker.com/r/fetalsvrtk (no license)

Status: code verified

[23407] doi:10.1162/imag_a_00322 [paper, repository]

Cerebral artery and brain pathology correlates of antemortem cerebral artery 4D flow MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: uwmri/QVT (BSD-2-Clause)

Status: code verified, 22 files readable, 2 matches

[23408] doi:10.1162/imag_a_00328 [paper, repository]

PET imaging of the serotonin 1A receptor in major depressive disorder: Hierarchical multivariate analysis of [ &lt;sup&gt;11&lt;/sup&gt; C]WAY100635 overcomes outcome measure discrepancies.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mathesong/SiMBA_Materials (no license)

Status: code verified, 5 files readable, 1 match

[23409] doi:10.1162/imag_a_00335 [paper]

Mean Kärger Model Water Exchange Rate in Brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[23410] doi:10.1177/09567976241279291 [paper, repository]

Cognitive Maps for a Non-Euclidean Environment: Path Integration and Spatial Memory on a Sphere.

Journal: Psychological science

Authors' code: OSF x4t9a (no license)

Status: code verified, 25 files readable, 9 matches

[23411] doi:10.1186/s12868-024-00905-9 [paper, data]

Structural and functional sex differences in medial temporal lobe subregions at midlife.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[23412] doi:10.1242/jeb.247956 [paper, repository]

Social and auditory experience shapes forebrain responsiveness in zebra finches before the sensitive period of vocal learning.

Journal: The Journal of experimental biology

Authors' code: HealeyLab/SchroederandRemageHealey2024 (no license)

Status: code verified, 3 files readable, 3 matches

[23413] doi:10.1371/journal.pone.0310513 [paper, data]

Cross-modal representation of chewing food in posterior parietal and visual cortex.

Journal: PloS one

Status: data only, 1 dataset cited

[23414] doi:10.3390/brainsci14111061 [paper, repository]

Impact of Experimentally Induced Pain on Logical Reasoning and Underlying Attention-Related Psychophysiological Mechanisms.

Journal: Brain sciences

Authors' code: OSF xc5sr (no license)

Status: code verified, 3 files readable, 1 match

[23415] doi:10.7554/elife.84053 [paper, repository]

Emergence of planar cell polarity from the interplay of local interactions and global gradients.

Journal: eLife

Authors' code: Divyoj-Singh/Planar_cell_polarity (MIT)

Status: code verified, 27 files readable

[23416] doi:10.7717/peerj.18375 [paper, repository]

House sparrows do not show a diel rhythm in double-strand DNA damage in erythrocytes.

Journal: PeerJ

Authors' code: supp:PMC11514765/peerj-12-18375-s001.r (no license)

Status: code verified, 1 file readable, 3 matches

Thursday, 24 October 2024 (33 papers)

[23417] doi:10.1002/mrm.30331 [paper, repository]

A deep brain stimulation-conditioned RF coil for 3T MRI.

Journal: Magnetic resonance in medicine

Authors' code: Rad-Lab-Northwestern/Rad-Lab-Paper-2024 (no license)

Status: empty repository, 1 file readable

[23418] doi:10.1007/s00415-024-12604-w [paper, repository]

Implanted cortical neuroprosthetics for speech and movement restoration.

Journal: Journal of neurology

Authors' code: Zenodo 4588601 (CC-BY-4.0)

Status: empty repository

[23419] doi:10.1007/s11357-024-01376-w [paper, repository]

Complementary value of molecular, phenotypic, and functional aging biomarkers in dementia prediction.

Journal: GeroScience

Authors' code: LAMaglan/ADNI-FI-clustering (MIT), estenhl/frailty (no license)

Status: code verified, 10 files readable, 6 matches

[23420] doi:10.1016/j.celrep.2024.114876 [paper, repository]

Spatial, transcriptomic, and epigenomic analyses link dorsal horn neurons to chronic pain genetic predisposition.

Journal: Cell reports

Authors' code: theislab/scanpy (BSD-3-Clause), kostkalab/scds (other), brianhie/scanorama (MIT), SGDDNB/ShinyCell (GPL-3.0), satijalab/seurat (other), welch-lab/liger (GPL-3.0), Zenodo 13766248 (CC-BY-4.0), ENCODE-DCC/atac-seq-pipeline (MIT), bulik/ldsc (GPL-3.0), pfenninglab/dorsalhorn_conserved_rna_atac_xen (no license)

Status: code verified, 472 files readable, 23 matches

[23421] doi:10.1016/j.heliyon.2024.e39785 [paper]

Visual analysis of research hotspots and trends in traditional Chinese medicine for depression in the 21st century: A bibliometric study based on citespace and VOSviewer.

Journal: Heliyon

Status: code on request

[23422] doi:10.1016/j.isci.2024.111243 [paper]

Evolution of queen pheromone receptor tuning in four honeybee species (Hymenoptera, Apidae, Apis).

Journal: iScience

Status: code on request

[23423] doi:10.1016/j.isci.2024.111253 [paper, repository]

Early synaptic dysfunction of striatal parvalbumin interneurons in a mouse model of Parkinson's disease.

Journal: iScience

Authors' code: wildrootlab/SHARCQ (no license), att-circ-contrl/wlBurst_v2 (CC-BY-4.0), Zenodo 8237447 (CC-BY-4.0)

Status: code verified, 393 files readable, 4 matches

[23424] doi:10.1016/j.neuroimage.2024.120905 [paper, data]

Sex-specific age-related differences in cerebrospinal fluid clearance assessed by resting-state functional magnetic resonance imaging.

Journal: NeuroImage

Status: code on request, 2 datasets cited

[23425] doi:10.1038/s41398-024-03152-y [paper, repository]

Genomic structural equation modeling reveals latent phenotypes in the human cortex with distinct genetic architecture.

Journal: Translational psychiatry

Authors' code: GenomicSEM/GenomicSEM (GPL-3.0)

Status: code verified, 34 files readable, 1 match

[23426] doi:10.1038/s41398-024-03161-x [paper, data]

Intravenous chaperone treatment of late-stage Alzheimer´s disease (AD) mouse model affects amyloid plaque load, reactive gliosis and AD-related genes.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[23427] doi:10.1038/s41467-024-53217-1 [paper, repository]

Interaction between subventricular zone microglia and neural stem cells impacts the neurogenic response in a mouse model of cortical ischemic stroke.

Journal: Nature communications

Authors' code: SchachtrupLab/Neuromac_B1 (no license)

Status: code verified, 15 files readable, 13 matches

[23428] doi:10.1038/s41467-024-53232-2 [paper, repository]

Deep-prior ODEs augment fluorescence imaging with chemical sensors.

Journal: Nature communications

Authors' code: ThanhAnPham/DUSK (MIT), codeocean:5983205 (no license)

Status: code verified, 8 files readable, 5 matches

[23429] doi:10.1038/s41467-024-53299-x [paper, repository]

Measuring the dynamic balance of integration and segregation underlying consciousness, anesthesia, and sleep in humans.

Journal: Nature communications

Authors' code: Zenodo 12811335 (CC-BY-4.0), janghw4/multilevel-integration-segregation-balance (GPL-3.0)

Status: code verified, 12 files readable, 1 match

[23430] doi:10.1038/s41467-024-53342-x [paper]

Convergent representation of values from tactile and visual inputs for efficient goal-directed behavior in the primate putamen.

Journal: Nature communications

Status: code on request

[23431] doi:10.1038/s41467-024-53585-8 [paper, repository]

NEK4 modulates circadian fluctuations of emotional behaviors and synaptogenesis in male mice.

Journal: Nature communications

Authors' code: Zenodo 13938317 (CC-BY-4.0), miao777lee/nek4 (no license)

Status: code verified, 2 files readable

[23432] doi:10.1038/s41598-024-75689-3 [paper]

Injured inflammatory environment overrides the TET2 shaped epigenetic landscape of pluripotent stem cell derived human neural stem cells.

Journal: Scientific reports

Status: data only

[23433] doi:10.1038/s44319-024-00292-6 [paper, data]

Histone modifications and Sp1 promote GPR160 expression in bone cancer pain within rodent models.

Journal: EMBO reports

Status: data only, 1 dataset cited

[23434] doi:10.1083/jcb.202402169 [paper, repository]

CryoVesNet: A dedicated framework for synaptic vesicle segmentation in cryo-electron tomograms.

Journal: The Journal of cell biology

Authors' code: Zuber-group/CryoVesNet (GPL-3.0)

Status: code verified, 36 files readable, 9 matches

[23435] doi:10.1088/1741-2552/ad7f87 [paper, data]

TMS-induced phase resets depend on TMS intensity and EEG phase.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[23436] doi:10.1093/braincomms/fcae372 [paper, repository]

Enhanced MRI-based brain tumour classification with a novel Pix2pix generative adversarial network augmentation framework.

Journal: Brain communications

Authors' code: Efep3332/GANs-Generated-Synthetic-Dataset (no license)

Status: code verified, 15 files readable, 12 matches

[23437] doi:10.1162/imag_a_00325 [paper]

NOise Reduction with DIstribution Corrected (NORDIC) principal component analysis improves brain activity detection across rodent and human functional MRI contexts.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[23438] doi:10.1162/imag_a_00327 [paper, repository]

High-resolution 7T fMRI reveals the visual zone of the human claustrum.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 7ebm2 (no license)

Status: code verified, 15 files readable, 2 matches

[23439] doi:10.1162/imag_a_00330 [paper, repository]

No evidence that visual impulses enhance the readout of retrieved long-term memory contents from EEG activity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sandervanbree/MemPing (no license)

Status: code verified, 41 files readable, 12 matches

[23440] doi:10.1162/imag_a_00331 [paper, repository]

Assessing the consistency and sensitivity of the neural correlates of narrative stimuli using functional near-infrared spectroscopy.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: TheOwenLab/fNIRS-Narrative-Stimuli (no license)

Status: code verified, 26 files readable, 6 matches

[23441] doi:10.1162/imag_a_00332 [paper, repository]

Distinct effects of slow and fast theta tACS in enhancing temporal memory.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF gf7e5 (no license)

Status: code verified, 20 files readable, 4 matches

[23442] doi:10.1186/s12014-024-09505-5 [paper, data]

SPOT: spatial proteomics through on-site tissue-protein-labeling.

Journal: Clinical proteomics

Status: data only, 1 dataset cited

[23443] doi:10.1186/s12964-024-01872-8 [paper, data]

USP9X-mediated deubiquitination of Raptor contributes to autophagy impairment and memory deficits in P301S mice.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[23444] doi:10.1186/s13195-024-01582-w [paper, repository]

EEG biomarkers in Alzheimer's and prodromal Alzheimer's: a comprehensive analysis of spectral and connectivity features.

Journal: Alzheimer's research & therapy

Authors' code: chinnakkaruppanadaikkan/eeg-features (no license)

Status: code verified, 50 files readable, 3 matches

[23445] doi:10.1186/s43556-024-00213-y [paper, data]

Identification of nitric oxide-mediated necroptosis as the predominant death route in Parkinson's disease.

Journal: Molecular biomedicine

Status: data only, 1 dataset cited

[23446] doi:10.3389/fmolb.2024.1478611 [paper, data]

Novel cuproptosis metabolism-related molecular clusters and diagnostic signature for Alzheimer's disease.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[23447] doi:10.3390/e26110901 [paper, data]

A Fisher Information Theory of Aesthetic Preference for Complexity.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

[23448] doi:10.3390/s24216821 [paper, repository]

Computer Vision-Driven Movement Annotations to Advance fNIRS Pre-Processing Algorithms.

Journal: Sensors (Basel, Switzerland)

Authors' code: choyingw/SynergyNet (MIT)

Status: code verified, 58 files readable, 3 matches

[23449] doi:10.7554/elife.90893 [paper, repository]

Increasing adult-born neurons protects mice from epilepsy.

Journal: eLife

Authors' code: OSF vftng (no license), OSF ak6u9 (no license), OSF 2yz97 (no license), OSF tkeu5 (no license), OSF gyst4 (no license), OSF pcngt (no license), OSF 2r5ej (no license), OSF 7tj2x (no license)

Status: empty repository

Wednesday, 23 October 2024 (40 papers)

[23450] doi:10.1002/alz.14334 [paper, repository]

Reductions in the white-gray functional connectome in preclinical Alzheimer's disease and their associations with amyloid and cognition.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Gaogr/preAD_bipartite (no license)

Status: code verified, 4 files readable

[23451] doi:10.1016/j.dcn.2024.101467 [paper, data]

The brain's structural connectivity and pre-reading abilities in young children with prenatal alcohol exposure.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[23452] doi:10.1016/j.heliyon.2024.e39735 [paper, repository]

Inhibition of the inferior parietal lobe triggers state-dependent network adaptations.

Journal: Heliyon

Authors' code: kathleen-williams/network_adaptations_to_IPL_inhibition (GPL-3.0)

Status: empty repository, 2 files readable

[23453] doi:10.1016/j.ijchp.2024.100515 [paper, data]

Interoception primes negative emotion processing during cognitive reappraisal: Electroencephalographical evidence.

Journal: International journal of clinical and health psychology : IJCHP

Status: data only, 1 dataset cited

[23454] doi:10.1016/j.isci.2024.111239 [paper, repository]

Molecular diversity and migration of GABAergic neurons in the developing ventral midbrain.

Journal: iScience

Authors' code: anna-alemany/transcriptomics (GPL-3.0), Zenodo 595481 (other-open)

Status: code verified, 96 files readable, 1 match

[23455] doi:10.1017/s0033291724002174 [paper, repository]

Associations between polygenic scores for cognitive and non-cognitive factors of educational attainment and measures of behavior, psychopathology, and neuroimaging in the adolescent brain cognitive development study.

Journal: Psychological medicine

Authors' code: WashU-BG/ABCD_cog_non_cog_2023 (no license)

Status: code verified, 7 files readable, 1 match

[23456] doi:10.1038/s41380-024-02794-0 [paper, data]

Maternal dysbiosis produces long-lasting behavioral changes in offspring.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[23457] doi:10.1038/s41398-024-03153-x [paper]

Long-term cognitive training enhances fluid cognition and brain connectivity in individuals with MCI.

Journal: Translational psychiatry

Status: code on request

[23458] doi:10.1038/s41467-024-53088-6 [paper, repository]

SpliceTransformer predicts tissue-specific splicing linked to human diseases.

Journal: Nature communications

Authors' code: ShenLab-Genomics/SpliceTransformer (Apache-2.0), Zenodo 13824839 (CC-BY-4.0)

Status: code verified, 20 files readable, 8 matches

[23459] doi:10.1038/s41467-024-53256-8 [paper, repository]

Border-ownership tuning determines the connectivity between V4 and V1 in the macaque visual system.

Journal: Nature communications

Authors' code: OSF fj7av (no license), fattsmellf/BorderOwnership (no license)

Status: code verified, 3 files readable, 5 matches

[23460] doi:10.1038/s41467-024-53326-x [paper, repository]

Sensory experience steers representational drift in mouse visual cortex.

Journal: Nature communications

Authors' code: Joel-Bauer/orientation_tuning_drift (MIT), betsyherbert/bauer-lewin-drift-2024 (no license)

Status: code verified, 25 files readable, 7 matches

[23461] doi:10.1038/s41467-024-53429-5 [paper, repository]

Remyelination protects neurons from DLK-mediated neurodegeneration.

Journal: Nature communications

Authors' code: EmeryLab/Myrf_iCKO_OpticNerve (MIT), Zenodo 13755371 (CC-BY-4.0)

Status: code verified, 64 files readable, 11 matches

[23462] doi:10.1038/s41586-024-08098-1 [paper, repository]

A subcortical feeding circuit linking an interoceptive node to jaw movement.

Journal: Nature

Authors' code: ckosse/Jaw_2024 (no license)

Status: empty repository

[23463] doi:10.1038/s41598-024-74848-w [paper, repository]

Emotional contagion to vocal smile revealed by combined pupil reactivity and motor resonance.

Journal: Scientific reports

Authors' code: OSF 6rus4 (no license)

Status: code verified, 14 files readable, 4 matches

[23464] doi:10.1038/s41598-024-75850-y [paper, data]

Hybrid deep models for parallel feature extraction and enhanced emotion state classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23465] doi:10.1038/s41598-024-77313-w [paper, data]

Repeatability and reproducibility of artificial intelligence-acquired fetal brain measurements (SonoCNS) in the second and third trimesters of pregnancy.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23466] doi:10.1038/s42003-024-07026-3 [paper, data]

Rapid modulation in music supports attention in listeners with attentional difficulties.

Journal: Communications biology

Status: code on request, 1 dataset cited

[23467] doi:10.1073/pnas.2417543121 [paper, repository]

Meta-learning of human motor adaptation via the dorsal premotor cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 26074357 (CC-BY-4.0)

Status: code verified

[23468] doi:10.1093/jamiaopen/ooae110 [paper, repository]

Federated learning of medical concepts embedding using BEHRT.

Journal: JAMIA open

Authors' code: nadavlab/FederatedBEHRT (Apache-2.0)

Status: code verified, 8 files readable, 2 matches

[23469] doi:10.1111/epi.18161 [paper, repository]

A deep-learning-based histopathology classifier for focal cortical dysplasia (FCD) unravels a complex scenario of comorbid FCD subtypes.

Journal: Epilepsia

Authors' code: hub.docker.com/r/joergvorndran (no license)

Status: code verified

[23470] doi:10.1111/jsr.14362 [paper, repository]

Retrospective validation of automatic sleep analysis with grey areas model for human-in-the-loop scoring approach.

Journal: Journal of sleep research

Authors' code: uef-smartsleeplab/sleeplab-format (MIT), rikuhuttunen/psg-simultscoring-models (MIT), Zenodo 7861887 (CC-BY-4.0)

Status: code verified, 62 files readable, 1 match

[23471] doi:10.1117/1.nph.11.4.045006 [paper]

Disentangling the impact of motion artifact correction algorithms on functional near-infrared spectroscopy-based brain network analysis.

Journal: Neurophotonics

Status: code on request

[23472] doi:10.1126/sciadv.adn6076 [paper, repository]

Contrastive signal-dependent plasticity: Self-supervised learning in spiking neural circuits.

Journal: Science advances

Authors' code: ago109/contrastive-signal-dependent-plasticity (BSD-3-Clause)

Status: code verified, 12 files readable, 3 matches

[23473] doi:10.1126/sciadv.adp8775 [paper, repository]

Youths' sensitivity to social media feedback: A computational account.

Journal: Science advances

Authors' code: OSF m7hw6 (no license)

Status: code verified, 4 files readable, 2 matches

[23474] doi:10.1126/sciadv.adr9951 [paper, repository]

Language at a glance: How our brains grasp linguistic structure from parallel visual input.

Journal: Science advances

Authors' code: Zenodo 13754480 (CC-BY-4.0)

Status: code verified

[23475] doi:10.1186/s12916-024-03714-3 [paper, repository]

Structure-function coupling changes in first-episode, treatment-naïve schizophrenia correlate with cell type-specific transcriptional signature.

Journal: BMC medicine

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 2 matches

[23476] doi:10.1186/s13321-024-00904-2 [paper, repository]

Graph neural processes for molecules: an evaluation on docking scores and strategies to improve generalization.

Journal: Journal of cheminformatics

Authors' code: mgarort/graph-nps-for-mols (MIT)

Status: code verified, 27 files readable, 9 matches

[23477] doi:10.1242/jcs.261953 [paper, repository]

Synchrotron X-ray imaging of soft biological tissues - principles, applications and future prospects.

Journal: Journal of cell science

Authors' code: google/neuroglancer (Apache-2.0)

Status: code verified, 912 files readable

[23478] doi:10.1371/journal.pone.0309425 [paper, data]

Event-related potentials of stimuli inhibition and access in cross-modal distractor-induced blindness.

Journal: PloS one

Status: data only, 2 datasets cited

[23479] doi:10.1523/jneurosci.0063-24.2024 [paper, repository]

Neuregulin1 Nuclear Signaling Influences Adult Neurogenesis and Regulates a Schizophrenia Susceptibility Gene Network within the Mouse Dentate Gyrus.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: RajNINDS/V321L_DG (no license)

Status: empty repository

[23480] doi:10.1523/jneurosci.0518-24.2024 [paper, repository]

Sequential Activation of Lateral Hypothalamic Neuronal Populations during Feeding and Their Assembly by Gamma Oscillations.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: NeuroAnalyz/Graph-based_clustering (no license)

Status: code verified, 2 files readable, 5 matches

[23481] doi:10.1523/jneurosci.0727-24.2024 [paper, data]

&lt;i&gt;Atp13a5&lt;/i&gt; Marker Reveals Pericyte Specification in the Mouse Central Nervous System.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[23482] doi:10.21203/rs.3.rs-5284501/v1 [paper, repository]

Characterising processing conditions that artifactually bias human brain tissue transcriptomes

Journal: Research Square (preprint)

Authors' code: combiz/scFlow (other)

Status: code verified, 107 files readable

[23483] doi:10.3389/fendo.2024.1448119 [paper, data]

Deciphering the role of lipid metabolism-related genes in Alzheimer's disease: a machine learning approach integrating Traditional Chinese Medicine.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[23484] doi:10.3389/fncom.2024.1445621 [paper, repository]

Latent dynamics of primary sensory cortical population activity structured by fluctuations in the local field potential.

Journal: Frontiers in computational neuroscience

Authors' code: probml/pmtk3 (MIT)

Status: code verified, 1,799 files readable, 1 match

[23485] doi:10.3389/fpubh.2024.1448988 [paper, data]

The SINFONIA project repository for AI-based algorithms and health data.

Journal: Frontiers in public health

Status: data only, 1 dataset cited

[23486] doi:10.3390/biom14111348 [paper, repository]

Deep-Learning-Based Segmentation of Cells and Analysis (DL-SCAN).

Journal: Biomolecules

Authors' code: banalok/dlscan (no license)

Status: code verified, 4 files readable, 2 matches

[23487] doi:10.3390/diagnostics14212363 [paper, data]

A Feature-Fusion Technique-Based Alzheimer's Disease Classification Using Magnetic Resonance Imaging.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[23488] doi:10.3390/s24216815 [paper, data]

Resting-State Electroencephalogram Depression Diagnosis Based on Traditional Machine Learning and Deep Learning: A Comparative Analysis.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[23489] doi:10.53941/tai.2025.100001 [paper, repository]

Self-Supervised Based Multi-View Graph Presentation Learning for Drug-Drug Interaction Prediction.

Journal: Transactions on artificial intelligence

Authors' code: snap-stanford/pretrain-gnns (MIT), dukekuang/SMG_DDI (no license)

Status: code verified, 82 files readable, 5 matches

Tuesday, 22 October 2024 (30 papers)

[23490] doi:10.1002/alz.14249 [paper, repository]

Comparative brain metabolomics reveals shared and distinct metabolic alterations in Alzheimer's disease and progressive supranuclear palsy.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: krumsieklab/ad-mayo-tauopathies (no license)

Status: code verified, 7 files readable, 2 matches

[23491] doi:10.1002/glia.24626 [paper, data]

Uptake of alpha-synuclein preformed fibrils is suppressed by inflammation and induces an aberrant phenotype in human microglia.

Journal: Glia

Status: data only, 1 dataset cited

[23492] doi:10.1016/j.cortex.2024.08.008 [paper, repository]

Reduced on-line speech gesture integration during multimodal language processing in adults with moderate-severe traumatic brain injury: Evidence from eye-tracking.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Authors' code: OSF 6ga8c (no license)

Status: code verified, 4 files readable, 2 matches

[23493] doi:10.1016/j.heliyon.2024.e39574 [paper, repository]

Automated denoising software for calcium imaging signals using deep learning.

Journal: Heliyon

Authors' code: SharifAmit/CalDenoise (BSD-3-Clause)

Status: code verified, 29 files readable, 7 matches

[23494] doi:10.1016/j.ijcchd.2024.100549 [paper, repository]

Segmental MRI pituitary and hypothalamus volumes post Fontan: An analysis of the Australian and New Zealand Fontan registry.

Journal: International journal of cardiology. Congenital heart disease

Authors' code: BBillot/hypothalamus_seg (Apache-2.0)

Status: code verified, 39 files readable

[23495] doi:10.1038/s41467-024-52988-x [paper, repository]

Integration of rate and phase codes by hippocampal cell-assemblies supports flexible encoding of spatiotemporal context.

Journal: Nature communications

Authors' code: DurstewitzLab/Cell-Assembly-Detection (no license), DurstewitzLab/CADopti (GPL-3.0)

Status: code verified, 22 files readable, 7 matches

[23496] doi:10.1038/s41467-024-53293-3 [paper, repository]

The brain hierarchically represents the past and future during multistep anticipation.

Journal: Nature communications

Authors' code: hannahtarder-stoll/predNav (no license)

Status: code verified, 4 files readable, 1 match

[23497] doi:10.1038/s41467-024-53312-3 [paper, repository]

Confidence control for efficient behaviour in dynamic environments.

Journal: Nature communications

Authors' code: OSF 5d8nh (no license), OSF d7ea8 (no license), OSF gky5a (no license)

Status: code verified, 34 files readable, 5 matches

[23498] doi:10.1038/s41514-024-00176-y [paper, data]

Aging and senescent fates of oligodendrocyte precursor cells in the mouse brain.

Journal: npj aging

Status: code on request, 1 dataset cited

[23499] doi:10.1038/s41531-024-00819-7 [paper, repository]

Direct and indirect regulation of β-glucocerebrosidase by the transcription factors USF2 and ONECUT2.

Journal: NPJ Parkinson's disease

Authors' code: Ginka21/CRISPRa_TF (no license)

Status: code verified, 39 files readable

[23500] doi:10.1038/s41598-024-76025-5 [paper, repository]

A causal role of the right dorsolateral prefrontal cortex in random exploration.

Journal: Scientific reports

Authors' code: arminti/a-causal-role-of-rdlpfc-in-random-exploration (MIT)

Status: code verified, 11 files readable, 3 matches

[23501] doi:10.1038/s42003-024-06791-5 [paper, repository]

Social conformity updates the neural representation of facial attractiveness.

Journal: Communications biology

Authors' code: OSF 5e7kr (no license)

Status: code verified, 7 files readable, 2 matches

[23502] doi:10.1038/s42003-024-07092-7 [paper]

Stage-specific expression patterns and co-targeting relationships among miRNAs in the developing mouse cerebral cortex.

Journal: Communications biology

Status: code on request

[23503] doi:10.1038/s43856-024-00623-7 [paper, repository]

Advanced three-dimensional X-ray imaging unravels structural development of the human thymus compartments.

Journal: Communications medicine

Authors' code: aleatzeni/SmartInterpol (no license)

Status: code verified, 1,244 files readable

[23504] doi:10.1038/s43856-024-00635-3 [paper, repository]

A click-based electrocorticographic brain-computer interface enables long-term high-performance switch scan spelling.

Journal: Communications medicine

Authors' code: iscoe/ezmsg (MIT), OSF 46skb (no license)

Status: code verified, 140 files readable

[23505] doi:10.1101/2024.10.21.619354 [paper, data]

Human short association fibers are thinner and less myelinated than long fibers

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[23506] doi:10.1101/2024.10.21.619417 [paper, data]

Visual objects refine head direction coding

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[23507] doi:10.1162/imag_a_00323 [paper, repository]

ReMiND: Recovery of missing neuroimaging using diffusion models with application to Alzheimer's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jinhaoduan/ReMiND (no license)

Status: code verified, 40 files readable, 1 match

[23508] doi:10.1162/imag_a_00324 [paper]

Measurement variability of blood-brain barrier permeability using dynamic contrast-enhanced magnetic resonance imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[23509] doi:10.1172/jci.insight.168440 [paper, data]

Neuronal SLC39A8 deficiency impairs cerebellar development by altering manganese homeostasis.

Journal: JCI insight

Status: data only, 1 dataset cited

[23510] doi:10.1371/journal.pbio.3002610 [paper, repository]

Functional reorganization of brain regions supporting artificial grammar learning across the first half year of life.

Journal: PLoS biology

Authors' code: Zenodo 13636036 (CC-BY-4.0), bertram0611/functional-reorganization-of-brain-regions-supporting-artificial-grammar-learning (no license)

Status: code verified, 16 files readable, 3 matches

[23511] doi:10.1371/journal.pbio.3002841 [paper, data]

Free long-chain fatty acids trigger early postembryonic development in starved Caenorhabditis elegans by suppressing mTORC1.

Journal: PLoS biology

Status: data only, 1 dataset cited

[23512] doi:10.1371/journal.pcbi.1012507 [paper, repository]

Distributed network flows generate localized category selectivity in human visual cortex.

Journal: PLoS computational biology

Authors' code: ColeLab/ActFlowCategories (GPL-3.0), ColeLab/ActflowToolbox (MIT)

Status: code verified, 77 files readable, 25 matches

[23513] doi:10.1371/journal.pone.0307378 [paper, data]

Stationary correlation pattern in highly non-stationary MEG recordings of healthy subjects and its relation to former EEG studies.

Journal: PloS one

Status: data only, 1 dataset cited

[23514] doi:10.1371/journal.pone.0311558 [paper, data]

RSBagging: An ensemble classifier detecting the after-effects of ischemic stroke through EEG connectivity and microstates.

Journal: PloS one

Status: data only, 1 dataset cited

[23515] doi:10.3389/fnins.2024.1473132 [paper, repository]

Perceptual super-resolution in multiple sclerosis MRI.

Journal: Frontiers in neuroscience

Authors' code: diagiraldo/PRETTIER (GPL-3.0), sanghyun-son/EDSR-PyTorch (MIT), xinntao/Real-ESRGAN (BSD-3-Clause)

Status: code verified, 75 files readable, 3 matches

[23516] doi:10.3390/biology13110851 [paper, data]

Putative Nociceptive Responses in a Decapod Crustacean: The Shore Crab (<i>Carcinus maenas</i>).

Journal: Biology

Status: data only, 1 dataset cited

[23517] doi:10.3390/biomimetics9110650 [paper, repository]

A Computationally Efficient Neuronal Model for Collision Detection with Contrast Polarity-Specific Feed-Forward Inhibition.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: Ryannnice/Supplementary_Materials_FFI_ON_OFF (no license)

Status: code verified, 793 files readable, 2 matches

[23518] doi:10.3390/nu16213586 [paper]

<i>Bifidobacterium lactis</i>-Derived Vesicles Attenuate Hippocampal Neuroinflammation by Targeting IL-33 to Regulate FoxO6/P53 Signaling.

Journal: Nutrients

Status: data only

[23519] doi:10.3390/pathogens13110920 [paper]

Radiological Changes in the Spinal Cord and Brain of Patients with HTLV-1-Associated Myelopathy/Tropical Spastic Paraparesis (HAM/TSP).

Journal: Pathogens (Basel, Switzerland)

Status: code on request

Monday, 21 October 2024 (34 papers, 1 on this page)

[23520] doi:10.1002/alz.14300 [paper, repository]

Dementia risk scores, apolipoprotein E, and risk of Alzheimer's disease: One size does not fit all.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: AndrewsLabUCSF/CAIDE_APOE (MIT)

Status: code verified, 22 files readable, 5 matches

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.