Every paper, by date: page 106

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 106 of 200: 21 October 2024 to 12 October 2024.

Monday, 21 October 2024 (34 papers, 33 on this page)

[23521] doi:10.1007/s11571-024-10181-2 [paper]

Assessing the influence of latency variability on EEG classifiers - a case study of face repetition priming.

Journal: Cognitive neurodynamics

Status: code on request

[23522] doi:10.1016/j.bja.2024.07.039 [paper, data]

Neural correlates of systemic lidocaine administration in healthy adults measured by functional MRI: a single arm open label study.

Journal: British journal of anaesthesia

Status: data only, 1 dataset cited

[23523] doi:10.1016/j.ebiom.2024.105399 [paper, repository]

Relationship between MRI brain-age heterogeneity, cognition, genetics and Alzheimer's disease neuropathology.

Journal: EBioMedicine

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable, 1 match

[23524] doi:10.1016/j.isci.2024.111209 [paper, repository]

<i>In vivo</i> mapping of the chemical exchange relayed nuclear Overhauser effect using deep magnetic resonance fingerprinting.

Journal: iScience

Authors' code: momentum-laboratory/rnoe-mrf (MIT), Zenodo 14006944 (CC-BY-4.0)

Status: code verified, 50 files readable, 3 matches

[23525] doi:10.1038/s41467-024-52733-4 [paper, repository]

Time-dependent neural arbitration between cue associative and episodic fear memories.

Journal: Nature communications

Authors' code: AureCor/Cortese_et_al_2024 (no license), bicr.atr.jp/~oyamashi/slr_web.html (no license)

Status: code verified, 11 files readable, 8 matches

[23526] doi:10.1038/s41467-024-53254-w [paper, repository]

Developmental mouse brain common coordinate framework.

Journal: Nature communications

Authors' code: figshare 26492122 (CC-BY-4.0), Zenodo 12853683 (CC-BY-4.0), Zenodo 12854081 (CC-BY-4.0), yongsookimlab/devccf (CC-BY-4.0), yongsookimlab/devccf_ccfv3_mapping (BSD-2-Clause)

Status: code verified, 144 files readable, 8 matches

[23527] doi:10.1038/s41467-024-53406-y [paper, repository]

Anticipatory and evoked visual cortical dynamics of voluntary temporal attention.

Journal: Nature communications

Authors' code: denisonlab/TANoise_MEG (MIT), Zenodo 13368267 (CC-BY-4.0)

Status: code verified, 399 files readable, 11 matches

[23528] doi:10.1038/s42003-024-06784-4 [paper, repository]

Measuring instability in chronic human intracortical neural recordings towards stable, long-term brain-computer interfaces.

Journal: Communications biology

Authors' code: ewinapun/MINDFUL (other)

Status: code verified, 66 files readable, 12 matches

[23529] doi:10.1098/rstb.2023.0083 [paper, repository]

Individualized functional magnetic resonance imaging neuromodulation enhances visuospatial perception: a proof-of-concept study.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: Zenodo 10161884 (lgpl-2.0-or-later)

Status: code verified, 7 files readable, 3 matches

[23530] doi:10.1098/rstb.2023.0085 [paper, data]

Closed-loop fMRI at the mesoscopic scale of columns and layers: Can we do it and why would we want to?

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 1 dataset cited

[23531] doi:10.1098/rstb.2023.0089 [paper, repository]

Online self-evaluation of fMRI-based neurofeedback performance.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7461950 (no license)

Status: code found, still to be checked

[23532] doi:10.1098/rstb.2023.0090 [paper, data]

Decoding and modifying dynamic attentional bias in gaming disorder.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 2 datasets cited

[23533] doi:10.1098/rstb.2023.0091 [paper, repository]

Inducing representational change in the hippocampus through real-time neurofeedback.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: KailongPeng/real_time_neurofeedback (no license)

Status: code verified, 29 files readable, 5 matches

[23534] doi:10.1098/rstb.2023.0094 [paper, repository]

Regulation of craving for real-time fMRI neurofeedback based on individual classification.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7461948 (no license)

Status: code found, still to be checked

[23535] doi:10.1098/rstb.2023.0097 [paper, repository]

Effects of fMRI neurofeedback of right inferior frontal cortex on inhibitory brain activation in children with ADHD.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: OSF n8pdf (no license), OSF fz2y7 (no license)

Status: empty repository

[23536] doi:10.1098/rstb.2023.0098 [paper, data]

Neurorights in the Constitution: from neurotechnology to ethics and politics.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 1 dataset cited

[23537] doi:10.1098/rstb.2024.0186 [paper, data]

Amygdala self-neuromodulation capacity as a window for process-related network recruitment.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 2 datasets cited

[23538] doi:10.1177/26331055241292592 [paper, data]

Increased Resting-State BOLD Turnover (TBOLD) is Associated With Decreased Cognitive Performance During Aging.

Journal: Neuroscience insights

Status: data only, 1 dataset cited

[23539] doi:10.1186/s12915-024-02039-0 [paper, repository]

Molecular mechanisms underlying the neural correlates of working memory.

Journal: BMC biology

Authors' code: OSF fq8z3 (no license)

Status: code verified, 22 files readable, 2 matches

[23540] doi:10.1186/s12967-024-05729-z [paper]

Classifying disorders of consciousness using a novel dual-level and dual-modal graph learning model.

Journal: Journal of translational medicine

Status: code on request

[23541] doi:10.1186/s12987-024-00581-1 [paper, data]

Data-independent acquisition proteomic analysis of the brain microvasculature in Alzheimer's disease identifies major pathways of dysfunction and upregulation of cytoprotective responses.

Journal: Fluids and barriers of the CNS

Status: data only, 7 datasets cited

[23542] doi:10.1186/s13024-024-00758-0 [paper, data]

Amyloid-β (Aβ) immunotherapy induced microhemorrhages are linked to vascular inflammation and cerebrovascular damage in a mouse model of Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[23543] doi:10.1186/s40478-024-01871-3 [paper, repository]

Mapping the glial transcriptome in Huntington's disease using snRNAseq: selective disruption of glial signatures across brain regions.

Journal: Acta neuropathologica communications

Authors' code: Anna-Williams/ANC_supplementary_repo (no license)

Status: code verified, 26 files readable, 9 matches

[23544] doi:10.1371/journal.pbio.3002858 [paper, repository]

Decoding reveals the neural representation of perceived and imagined musical sounds.

Journal: PLoS biology

Authors' code: Zenodo 13760787 (CC-BY-4.0), drqm/music_imagery_data_sharing (no license)

Status: code verified, 125 files readable, 11 matches

[23545] doi:10.1371/journal.pcbi.1012505 [paper, repository]

Abrupt and spontaneous strategy switches emerge in simple regularised neural networks.

Journal: PLoS computational biology

Authors' code: aloewe/insightnets (no license)

Status: code verified, 59 files readable, 9 matches

[23546] doi:10.1371/journal.pgen.1011441 [paper, data]

The Drosophila circadian clock gene cycle controls the development of clock neurons.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[23547] doi:10.1371/journal.pone.0276832 [paper, repository]

3D CNN for neuropsychiatry: Predicting Autism with interpretable Deep Learning applied to minimally preprocessed structural MRI data.

Journal: PloS one

Authors' code: garciaml/Autism-3D-CNN-brain-sMRI (MIT)

Status: code verified, 20 files readable, 6 matches

[23548] doi:10.1371/journal.pone.0311319 [paper, repository]

Neurocognitive dynamics of preparatory and adaptive cognitive control: Insights from mass-univariate and multivariate pattern analysis of EEG data.

Journal: PloS one

Authors' code: JoseAlanis/eeg_patterns_dpx (BSD-3-Clause), OSF d49qw (no license), Zenodo 6363576 (MIT), sappelhoff/pyprep (MIT)

Status: code verified, 97 files readable, 15 matches

[23549] doi:10.2147/jir.s479154 [paper, data]

Trimethylamine N-Oxide Aggravates Neuro-Inflammation via lncRNA Fendrr/miR-145-5p/PXN Axis in Vascular Dementia Rats.

Journal: Journal of inflammation research

Status: data only, 1 dataset cited

[23550] doi:10.3390/antiox13101274 [paper]

Integrative Human Genetic and Cellular Analysis of the Pathophysiological Roles of AnxA2 in Alzheimer's Disease.

Journal: Antioxidants (Basel, Switzerland)

Status: data only

[23551] doi:10.7150/ijbs.102051 [paper, data]

SUMOylation modification of HNRNPK at the K422 site promotes invasion in glioblastoma.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

[23552] doi:10.7150/jca.100144 [paper]

Identification of an Immune signature assisted prognosis, and immunotherapy prediction for IDH wildtype glioblastoma.

Journal: Journal of Cancer

Status: data only

[23553] doi:10.7150/thno.100939 [paper, data]

HDAC7 drives glioblastoma to a mesenchymal-like state via LGALS3-mediated crosstalk between cancer cells and macrophages.

Journal: Theranostics

Status: data only, 1 dataset cited

Sunday, 20 October 2024 (5 papers)

[23554] doi:10.1002/alz.14128 [paper]

Whole-genome sequencing study in Koreans identifies novel loci for Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only

[23555] doi:10.1016/j.heliyon.2024.e39455 [paper, data]

Metagenome mining divulges virulent and multidrug resistant <i>Pseudomonas aeruginosa</i> ST242 and <i>Klebsiella michiganensis</i> ST∗1b23 coinfecting an 8-month-old meningitis infant under ICU in Kampala, Uganda, East Africa.

Journal: Heliyon

Status: data only, 4 datasets cited

[23556] doi:10.1016/j.ijchp.2024.100511 [paper, repository]

Neural impacts of personality on deception for applications of deception detection.

Journal: International journal of clinical and health psychology : IJCHP

Authors' code: Meiyan88/fNIRS-deception-detection (no license)

Status: code verified, 7 files readable, 1 match

[23557] doi:10.1016/j.neurot.2024.e00472 [paper, data]

Post-injury treatment with 7,8-dihydroxyflavone attenuates white matter pathology in aged mice following focal traumatic brain injury.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[23558] doi:10.1038/s41598-024-76046-0 [paper, repository]

Monitoring pilot trainees' cognitive control under a simulator-based training process with EEG microstate analysis.

Journal: Scientific reports

Authors' code: doi.gin.g-node.org/10.12751/g-node.dh7zhl (no license)

Status: code verified

Saturday, 19 October 2024 (14 papers)

[23559] doi:10.1016/j.celrep.2024.114871 [paper, repository]

Dissociable contributions of the amygdala and ventral hippocampus to stress-induced changes in defensive behavior.

Journal: Cell reports

Authors' code: ZachPenn/2024_CellReports (GPL-3.0), Zenodo 13371993 (CC-BY-4.0), ZachPenn/CellCounting (no license)

Status: code verified, 45 files readable, 7 matches

[23560] doi:10.1016/j.celrep.2024.114892 [paper, repository]

A genetic and microscopy toolkit for manipulating and monitoring regeneration in Macrostomum lignano.

Journal: Cell reports

Authors' code: hongquanli/octopi-research (BSD-3-Clause), prakashlab/squid-tracking (GPL-3.0)

Status: code verified, 235 files readable, 1 match

[23561] doi:10.1038/s41467-024-53098-4 [paper, data]

A millisecond coarse-grained simulation approach to decipher allosteric cannabinoid binding at the glycine receptor α1.

Journal: Nature communications

Status: data only, 1 dataset cited

[23562] doi:10.1038/s41598-024-75170-1 [paper, repository]

Hippocampal recording with a soft microelectrode array in a cranial window imaging scheme: a validation study.

Journal: Scientific reports

Authors' code: BenceSzmola/DataAnalysisSuite (no license)

Status: code verified, 54 files readable

[23563] doi:10.1038/s41598-024-75370-9 [paper, repository]

Deep learning based automatic detection and dipole estimation of epileptic discharges in MEG: a multi-center study.

Journal: Scientific reports

Authors' code: codeocean:8268914 (no license)

Status: code found, still to be checked

[23564] doi:10.1038/s41598-024-75694-6 [paper, data]

Exploration of the shared gene signatures and molecular mechanisms between Alzheimer's disease and intracranial aneurysm.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23565] doi:10.1038/s41746-024-01277-4 [paper, repository]

Biologically informed deep neural networks provide quantitative assessment of intratumoral heterogeneity in post treatment glioblastoma.

Journal: NPJ digital medicine

Authors' code: hairongw/BioNet (CC-BY-NC-SA-4.0)

Status: code verified, 29 files readable, 4 matches

[23566] doi:10.1038/s42003-024-07060-1 [paper, repository]

Identification of brain region-specific landscape and functions of clustered circRNAs in Alzheimer's disease using circMeta2.

Journal: Communications biology

Authors' code: lichen-lab/circMeta2 (other)

Status: code verified, 6 files readable, 2 matches

[23567] doi:10.1080/15592294.2024.2416345 [paper, data]

Parental arsenic exposure and tissue-specific DNA methylation in Bangladeshi infants with spina bifida.

Journal: Epigenetics

Status: data only, 1 dataset cited

[23568] doi:10.1186/s12974-024-03255-9 [paper, data]

Myeloid gasdermin D drives early-stage T cell immunity and peripheral inflammation in a mouse model of Alzheimer's disease.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[23569] doi:10.1186/s12974-024-03257-7 [paper, data]

Anti-CD49d Ab treatment ameliorates age-associated inflammatory response and mitigates CD8<sup>+</sup> T-cell cytotoxicity after traumatic brain injury.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[23570] doi:10.3390/cells13201735 [paper]

Transplacental Transfer of Oxytocin and Its Impact on Neonatal Cord Blood and In Vitro Retinal Cell Activity.

Journal: Cells

Status: data only

[23571] doi:10.3390/jcm13206252 [paper, repository]

A New Tool for Extracting Static and Dynamic Parameters from [¹⁸F]F-DOPA PET/CT in Pediatric Gliomas.

Journal: Journal of clinical medicine

Authors' code: MicheleMureddu/Pediatric_fdopa_pipeline (Apache-2.0)

Status: code verified, 27 files readable, 8 matches

[23572] doi:10.3390/s24206734 [paper, repository]

Dynamical Embedding of Single-Channel Electroencephalogram for Artifact Subspace Reconstruction.

Journal: Sensors (Basel, Switzerland)

Authors' code: NeuralLabIITGuwahati/E-ASR (GPL-3.0)

Status: code verified, 2 files readable

Friday, 18 October 2024 (32 papers)

[23573] doi:10.1016/j.dcn.2024.101463 [paper, data]

Delay discounting in adolescence depends on whom you wait for: Evidence from a functional neuroimaging study.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[23574] doi:10.1016/j.eclinm.2024.102889 [paper]

Treatment for essential tremor: a systematic review and Bayesian Model-based Network Meta-analysis of RCTs.

Journal: EClinicalMedicine

Status: code on request

[23575] doi:10.1016/j.heliyon.2024.e39129 [paper, repository]

Slow but flexible or fast but rigid? Discrete and continuous processes compared.

Journal: Heliyon

Authors' code: priorelli/discrete-continuous (no license)

Status: code verified, 19 files readable, 1 match

[23576] doi:10.1016/j.heliyon.2024.e39533 [paper, data]

Transcriptomic analysis of embryonic mouse hypothalamic N38 cells exposed to high-energy protons and/or simulated microgravity.

Journal: Heliyon

Status: data only, 1 dataset cited

[23577] doi:10.1016/j.heliyon.2024.e39535 [paper, data]

Toe1 promotes proliferation and differentiation of neural progenitor cells.

Journal: Heliyon

Status: data only, 1 dataset cited

[23578] doi:10.1016/j.heliyon.2024.e39607 [paper, data]

Brain-targeting liposome-based <i>APOE2</i> gene delivery exacerbates soluble amyloid-β accumulation in <i>App</i> <sup>NL-G-F</sup> mice.

Journal: Heliyon

Status: data only, 1 dataset cited

[23579] doi:10.1016/j.isci.2024.111195 [paper, data]

The role of osteocrin in memory formation during early learning, as revealed by visual imprinting in chicks.

Journal: iScience

Status: code on request, 1 dataset cited

[23580] doi:10.1016/j.xcrm.2024.101791 [paper, data]

Schwann cell-secreted frizzled-related protein 1 dictates neuroinflammation and peripheral nerve degeneration after neurotrauma.

Journal: Cell reports. Medicine

Status: code on request, 2 datasets cited

[23581] doi:10.1016/j.xpro.2024.103407 [paper, repository]

Protocol for synchronized wireless fiber photometry and video recordings in rodents during behavior.

Journal: STAR protocols

Authors' code: Zenodo 10819265 (CC-BY-4.0)

Status: code verified, 3 files readable, 3 matches

[23582] doi:10.1038/s41467-024-53148-x [paper, repository]

Multimodal gradients of basal forebrain connectivity across the neocortex.

Journal: Nature communications

Authors' code: sudesnac/HumanBF-Connectivity (no license), khanlab/subcorticalparc-smk (no license), Zenodo 7613835 (other-open), Zenodo 7622124 (other-open), Zenodo 13739128 (CC-BY-4.0)

Status: code verified, 433 files readable, 6 matches

[23583] doi:10.1038/s41467-024-53365-4 [paper, repository]

Changes in cortical manifold structure following stroke and its relation to behavioral recovery in the male macaque.

Journal: Nature communications

Authors' code: tingsterx/alignment_macaque-human (MIT), jnash22/Stroke_Gradients (no license), Zenodo 13624004 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[23584] doi:10.1038/s41562-024-02000-9 [paper, repository]

Executive function in children with neurodevelopmental conditions: a systematic review and meta-analysis.

Journal: Nature human behaviour

Authors' code: CarterSunUSYD/Transdiagnostic_EF_meta (MIT)

Status: code verified, 6 files readable

[23585] doi:10.1038/s41587-024-02447-1 [paper, repository]

Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues.

Journal: Nature biotechnology

Authors' code: Xieeeee/Droplet-Hi-C (no license), HuMingLab/Multiway.hub (no license), HuMingLab/ecDNAcaller (no license)

Status: code verified, 48 files readable, 22 matches

[23586] doi:10.1038/s41598-024-74419-z [paper, data]

The role of the claustrum in the acquisition, consolidation and reconsolidation of memories in mice.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23587] doi:10.1038/s41598-024-74475-5 [paper, data]

EEG-based optimization of eye state classification using modified-BER metaheuristic algorithm.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23588] doi:10.1038/s42003-024-07040-5 [paper, repository]

Thalamo-cortical neural mechanism of sodium salicylate-induced hyperacusis and anxiety-like behaviors.

Journal: Communications biology

Authors' code: JingyuChen96/FiberRecordingAndBehavioralAnalysis (no license)

Status: code verified, 6 files readable

[23589] doi:10.1038/s42003-024-07058-9 [paper, repository]

A new function of offset response in the primate auditory cortex: marker of temporal integration.

Journal: Communications biology

Authors' code: Zenodo 10807024 (CC-BY-4.0)

Status: code verified

[23590] doi:10.1126/sciadv.adn3057 [paper, data]

Lineage tracing of stem cell-derived dopamine grafts in a Parkinson's model reveals shared origin of all graft-derived cells.

Journal: Science advances

Status: data only, 1 dataset cited

[23591] doi:10.1126/sciadv.ado2291 [paper, repository]

Massive perturbation of sound representations by anesthesia in the auditory brainstem.

Journal: Science advances

Authors' code: Zenodo 10471542 (no license)

Status: dead link

[23592] doi:10.1126/sciadv.adp1115 [paper, data]

Astrocytic GLUT1 reduction paradoxically improves central and peripheral glucose homeostasis.

Journal: Science advances

Status: data only, 1 dataset cited

[23593] doi:10.1126/sciadv.adr2659 [paper, repository]

Network of artificial olfactory receptors for spatiotemporal monitoring of toxic gas.

Journal: Science advances

Authors' code: doi:10.5061/dryad.b5mkkwhnw (no license), Zenodo 13363616 (MIT)

Status: code verified, 3 files readable, 6 matches

[23594] doi:10.1161/jaha.124.035941 [paper, repository]

Choroid Plexus Volume in Rural Chinese Older Adults: Distribution and Association With Cardiovascular Risk Factors and Cerebral Small Vessel Disease.

Journal: Journal of the American Heart Association

Authors' code: psmd-marker.com (no license)

Status: code verified

[23595] doi:10.1186/s13065-024-01316-x [paper, repository]

Combined machine learning models, docking analysis, ADMET studies and molecular dynamics simulations for the design of novel FAK inhibitors against glioblastoma.

Journal: BMC chemistry

Authors' code: Yihuan-Zhao93/FAKML (no license)

Status: code verified, 1 file readable, 2 matches

[23596] doi:10.1371/journal.pcbi.1012383 [paper, repository]

Understanding dual process cognition via the minimum description length principle.

Journal: PLoS computational biology

Authors' code: tedmoskovitz/DualProcess (no license)

Status: code verified, 16 files readable

[23597] doi:10.1371/journal.pgen.1011276 [paper, data]

MBL-1/Muscleblind regulates neuronal differentiation and controls the splicing of a terminal selector in Caenorhabditis elegans.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[23598] doi:10.21037/tcr-24-543 [paper, data]

MiR-155-5p regulates autophagy and apoptosis of glioma cells through RICTOR.

Journal: Translational cancer research

Status: data only, 1 dataset cited

[23599] doi:10.3390/biomedicines12102388 [paper, data]

Enhancing Brain Tumor Diagnosis with L-Net: A Novel Deep Learning Approach for MRI Image Segmentation and Classification.

Journal: Biomedicines

Status: data only, 1 dataset cited

[23600] doi:10.3390/ijms252011205 [paper, repository]

Identification and Copy Number Variant Analysis of Enhancer Regions of Genes Causing Spinocerebellar Ataxia.

Journal: International journal of molecular sciences

Authors' code: molgenis/AGCT (no license), molgenis/GAP (LGPL-3.0)

Status: code verified, 46 files readable

[23601] doi:10.7554/elife.90859 [paper, repository]

Direct observation of the neural computations underlying a single decision.

Journal: eLife

Authors' code: Nat-Stein/LIP_single_trial_decision_variable (MIT)

Status: code verified, 122 files readable, 15 matches

[23602] doi:10.7554/elife.93981 [paper, repository]

Intrinsic dynamics of randomly clustered networks generate place fields and preplay of novel environments.

Journal: eLife

Authors' code: primon23/Preplay_paper (CC0-1.0)

Status: code verified, 89 files readable, 27 matches

[23603] doi:10.7554/elife.94520 [paper, repository]

The ketone body β-hydroxybutyrate ameliorates neurodevelopmental deficits in the GABAergic system of <i>daf-18/PTEN Caenorhabditis elegans</i> mutants.

Journal: eLife

Authors' code: andresgarelli/vimbaperon (GPL-3.0)

Status: code verified, 3 files readable

[23604] doi:10.7554/elife.94970 [paper, repository]

Population clustering of structural brain aging and its association with brain development.

Journal: eLife

Authors' code: imagen2/imagen_mri (no license), Zenodo 5129257 (BSD-3-Clause), frantisekvasa/rotate_parcellation (MIT), kirstiejane/nspn_whitakervertes_pnas2016 (MIT), rmarkello/abagen (BSD-3-Clause)

Status: code verified, 159 files readable, 2 matches

Thursday, 17 October 2024 (34 papers)

[23605] doi:10.1002/1878-0261.13743 [paper, repository]

The translatome of glioblastoma.

Journal: Molecular oncology

Authors' code: Arthurhe/RiboReadCountByFrame (no license)

Status: code verified, 8 files readable

[23606] doi:10.1007/s10334-024-01210-6 [paper]

Signal-to-noise trade-offs between magnet diameter and shield-to-coil distance for cylindrical Halbach-based portable MRI systems for neuroimaging.

Journal: Magma (New York, N.Y.)

Status: code on request

[23607] doi:10.1007/s12021-024-09688-0 [paper, repository]

A Deep Learning-based Pipeline for Segmenting the Cerebral Cortex Laminar Structure in Histology Images.

Journal: Neuroinformatics

Authors' code: junyanz/pytorch-CycleGAN-and-pix2pix (BSD-3-Clause), micdkfz/nnunet (no license), MIC-DKFZ/nnUNet (Apache-2.0)

Status: code verified, 292 files readable

[23608] doi:10.1016/j.cell.2024.09.036 [paper, data]

PLD3 and PLD4 synthesize S,S-BMP, a key phospholipid enabling lipid degradation in lysosomes.

Journal: Cell

Status: data only, 1 dataset cited

[23609] doi:10.1016/j.celrep.2024.114873 [paper]

Heterogeneity in oligodendrocyte precursor cell proliferation is dynamic and driven by passive bioelectrical properties.

Journal: Cell reports

Status: code on request

[23610] doi:10.1016/j.celrep.2024.114874 [paper, repository]

Biofunctionalized gelatin hydrogels support development and maturation of iPSC-derived cortical organoids.

Journal: Cell reports

Authors' code: andrewkjar/GelMA-Cad_organoids (no license)

Status: code verified, 35 files readable, 2 matches

[23611] doi:10.1016/j.lana.2024.100915 [paper]

Clinical profile of patients with acute traumatic brain injury undergoing cranial surgery in the United States: report from the 18-centre TRACK-TBI cohort study.

Journal: Lancet regional health. Americas

Status: code on request

[23612] doi:10.1016/j.stemcr.2024.09.007 [paper]

Targeting glioblastoma with a brain-penetrant drug that impairs brain tumor stem cells via NLE1-Notch1 complex.

Journal: Stem cell reports

Status: code on request

[23613] doi:10.1016/j.xcrm.2024.101781 [paper, repository]

Neuropeptide therapeutics to repress lateral septum neurons that disable sociability in an autism mouse model.

Journal: Cell reports. Medicine

Authors' code: PHYSIOPATHOLOGIE-RYTHME-CARDIAQUE/Photometry (GPL-3.0)

Status: code verified, 13 files readable, 1 match

[23614] doi:10.1016/j.xcrm.2024.101789 [paper, data]

Disrupting stroke-induced GAT-1-syntaxin1A interaction promotes functional recovery after stroke.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[23615] doi:10.1016/j.xpro.2024.103395 [paper, repository]

Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction.

Journal: STAR protocols

Authors' code: nickfrostneuro/single-cell (no license)

Status: code verified, 26 files readable, 6 matches

[23616] doi:10.1038/s41419-024-07124-4 [paper, repository]

PAK6 rescues pathogenic LRRK2-mediated ciliogenesis and centrosomal cohesion defects in a mutation-specific manner.

Journal: Cell death & disease

Authors' code: deepmind/alphafold (Apache-2.0)

Status: code verified, 101 files readable, 2 matches

[23617] doi:10.1038/s41467-024-52569-y [paper, data]

SUMOylation of Warts kinase promotes neural stem cell reactivation.

Journal: Nature communications

Status: data only, 1 dataset cited

[23618] doi:10.1038/s41467-024-52744-1 [paper, repository]

Dynamic patterns of functional connectivity in the human brain underlie individual memory formation.

Journal: Nature communications

Authors' code: research.ninds.nih.gov/zaghloul-lab/downloads (no license)

Status: code found, still to be checked

[23619] doi:10.1038/s41467-024-53257-7 [paper, repository]

Distinct functions for beta and alpha bursts in gating of human working memory.

Journal: Nature communications

Authors' code: OSF gu25f (no license)

Status: code verified, 39 files readable, 6 matches

[23620] doi:10.1038/s41467-024-53354-7 [paper, repository]

Spatiotemporal cerebral blood flow dynamics underlies emergence of the limbic-sensorimotor-association cortical gradient in human infancy.

Journal: Nature communications

Authors' code: haohuanglab/infant_rCBF_dynamics (no license), asotiras/brainparts (other), Zenodo 13625828 (CC-BY-4.0), mhouyang/infant_rcbf_dynamics (no license)

Status: code verified, 17 files readable

[23621] doi:10.1038/s41467-024-53477-x [paper, repository]

The human claustrum tracks slow waves during sleep.

Journal: Nature communications

Authors' code: BlackrockNeurotech/NPMK (no license), damisahlab/sleep_2 (no license)

Status: code verified, 149 files readable, 23 matches

[23622] doi:10.1038/s41592-024-02472-7 [paper, repository]

In vivo imaging of the human brain with the Iseult 11.7-T MRI scanner.

Journal: Nature methods

Authors' code: chrplr/prems (CC-BY-SA-4.0), chrplr/Posner_attention_networks_task (CC-BY-SA-4.0)

Status: code verified, 13 files readable, 2 matches

[23623] doi:10.1038/s42003-024-07034-3 [paper, data]

Identification of tauopathy-associated lipid signatures in Alzheimer's disease mouse brain using label-free chemical imaging.

Journal: Communications biology

Status: data only, 2 datasets cited

[23624] doi:10.1080/13880209.2024.2415660 [paper, data]

Integrating network pharmacology and experimental validation to investigate the effects and mechanism of Renshen Shouwu decoction for ameliorating Alzheimer's disease.

Journal: Pharmaceutical biology

Status: data only, 1 dataset cited

[23625] doi:10.1111/mec.17552 [paper, repository]

Gene Expression Shifts in Emperor Penguin Adaptation to the Extreme Antarctic Environment.

Journal: Molecular ecology

Authors' code: trinotate/trinotate (BSD-3-Clause), Zenodo 10218729 (CC-BY-4.0)

Status: code verified, 128 files readable, 7 matches

[23626] doi:10.1113/jp286284 [paper, data]

Synaptic communication within the microcircuits of pyramidal neurons and basket cells in the mouse prefrontal cortex.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

[23627] doi:10.1162/imag_a_00316 [paper]

MDMA modulates human sensorimotor cortical pathways during gentle touch.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[23628] doi:10.1162/imag_a_00317 [paper, repository]

Automated quality control of small animal MR neuroimaging data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: aswendt-lab (no license), Aswendt-Lab/AIDAqc (GPL-3.0), Aswendt-Lab/AIDAmri (GPL-3.0)

Status: code verified, 123 files readable, 6 matches

[23629] doi:10.1162/imag_a_00318 [paper, repository]

Functional excitation-inhibition ratio indicates near-critical oscillations across frequencies.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: figshare 27102523 (CC-BY-4.0), arthur-ervin/crosci (other)

Status: code verified, 11 files readable, 6 matches

[23630] doi:10.1162/imag_a_00320 [paper, repository]

Valenced tactile information is evoked by neutral visual cues following emotional learning.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF h7dja (no license)

Status: code verified, 7 files readable, 3 matches

[23631] doi:10.1186/s12967-024-05757-9 [paper]

Multi-omics insights into the microbiota-gut-brain axis and cognitive improvement post-bariatric surgery.

Journal: Journal of translational medicine

Status: code on request

[23632] doi:10.1186/s13036-024-00449-w [paper, repository]

Microglia morphological response to mesenchymal stromal cell extracellular vesicles demonstrates EV therapeutic potential for modulating neuroinflammation.

Journal: Journal of biological engineering

Authors' code: supp:PMC11488223/13036_2024_449_MOESM1_ESM.py (no license), figshare 27253322 (CC-BY-4.0)

Status: code verified, 2 files readable

[23633] doi:10.1371/journal.pbio.3002786 [paper, data]

Chromatin remodeller Chd7 is developmentally regulated in the neural crest by tissue-specific transcription factors.

Journal: PLoS biology

Status: data only, 1 dataset cited

[23634] doi:10.1371/journal.pone.0299611 [paper, data]

A 12-week in-phase bilateral upper limb exercise protocol promoted neuroplastic and clinical changes in people with relapsing remitting multiple sclerosis: A registered report randomized single-case concurrent multiple baseline study.

Journal: PloS one

Status: data only, 1 dataset cited

[23635] doi:10.1371/journal.pone.0305630 [paper, repository]

Multiclass classification of Autism Spectrum Disorder, attention deficit hyperactivity disorder, and typically developed individuals using fMRI functional connectivity analysis.

Journal: PloS one

Authors' code: Carol180619/Multiclass-ADHD-ASD (no license), bioimagesuiteweb.github.io/webapp (no license)

Status: code verified

[23636] doi:10.1371/journal.pone.0306704 [paper, repository]

Neural parameter calibration and uncertainty quantification for epidemic forecasting.

Journal: PloS one

Authors' code: ThGaskin/NeuralABM (no license)

Status: code verified, 95 files readable, 8 matches

[23637] doi:10.26508/lsa.202403052 [paper, repository]

Microglia are essential for tissue contraction in wound closure after brain injury in zebrafish larvae.

Journal: Life science alliance

Authors' code: bguillouet/traj-dist (MIT)

Status: code verified, 35 files readable

[23638] doi:10.3389/fncom.2024.1444019 [paper, data]

A combinatorial deep learning method for Alzheimer's disease classification-based merging pretrained networks.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

Wednesday, 16 October 2024 (38 papers)

[23639] doi:10.1007/s10162-024-00966-x [paper, repository]

Investigating the Effect of Blurring and Focusing Current in Cochlear Implant Users with the Panoramic ECAP Method.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Authors' code: charlottemgarcia/BlurCAP_and_pTPECAP (no license)

Status: code verified, 6 files readable, 3 matches

[23640] doi:10.1007/s10334-024-01207-1 [paper, repository]

MRI recovery with self-calibrated denoisers without fully-sampled data.

Journal: Magma (New York, N.Y.)

Authors' code: OSU-MR/reside (no license)

Status: code verified, 14 files readable

[23641] doi:10.1016/j.ajhg.2024.09.006 [paper, repository]

MARK2 variants cause autism spectrum disorder via the downregulation of WNT/β-catenin signaling pathway.

Journal: American journal of human genetics

Authors' code: thelovelab/DESeq2 (no license), YuLab-SMU/clusterProfiler (no license)

Status: code verified, 143 files readable, 2 matches

[23642] doi:10.1016/j.cub.2024.09.045 [paper, repository]

Pre-existing visual responses in a projection-defined dopamine population explain individual learning trajectories.

Journal: Current biology : CB

Authors' code: ysanchezaraujo/pre_vis_da_curr_bio (GPL-3.0)

Status: code verified, 41 files readable, 6 matches

[23643] doi:10.1016/j.cub.2024.09.048 [paper]

Substance P and dopamine form a "push-pull" system that diurnally regulates retinal gain.

Journal: Current biology : CB

Status: code on request

[23644] doi:10.1016/j.isci.2024.111174 [paper]

Increased muscle coactivation is linked with fast feedback control when reaching in unpredictable visual environments.

Journal: iScience

Status: code on request

[23645] doi:10.1016/j.isci.2024.111182 [paper, data]

Global neural encoding of behavioral strategies in mice during perceptual decision-making task with two different sensory patterns.

Journal: iScience

Status: data only, 1 dataset cited

[23646] doi:10.1016/j.isci.2024.111184 [paper, repository]

Multiple omics reveal link between the microbiota-gut-brain axis and intracranial aneurysm rupture.

Journal: iScience

Authors' code: usadellab/Trimmomatic (GPL-3.0)

Status: code verified, 152 files readable

[23647] doi:10.1016/j.isci.2024.111187 [paper]

Decoding the molecular and structural determinants of the neurokinin A and Aβ_1-42 peptide cross-interaction in the amyloid cascade pathway.

Journal: iScience

Status: code on request

[23648] doi:10.1016/j.xhgg.2024.100372 [paper]

LSM7 variants involving key amino acids for LSM complex function cause a neurodevelopmental disorder with leukodystrophy and cerebellar atrophy.

Journal: HGG advances

Status: code on request

[23649] doi:10.1016/j.xpro.2024.103388 [paper]

Protocol for detection of glial complement expression in relation to amyloid plaques in mouse brain with combined FISH and IHC.

Journal: STAR protocols

Status: code on request

[23650] doi:10.1038/s41380-024-02781-5 [paper]

Schizophrenia pathology reverse-translated into mouse shows hippocampal hyperactivity, psychosis behaviors and hyper-synchronous events.

Journal: Molecular psychiatry

Status: code on request

[23651] doi:10.1038/s41467-024-53074-y [paper, repository]

All-optical reporting of inhibitory receptor driving force in the nervous system.

Journal: Nature communications

Authors' code: joshs08/ORCHID (MIT), Eran707/Single-Cell-Simulator (MIT), Zenodo 13684771 (CC-BY-4.0), Zenodo 13376723 (CC-BY-4.0)

Status: code verified, 72 files readable, 8 matches

[23652] doi:10.1038/s41467-024-53251-z [paper, repository]

Female calls promote song learning in male juvenile zebra finches.

Journal: Nature communications

Authors' code: vallentinlab/Female_songlearning (no license)

Status: code verified, 11 files readable, 6 matches

[23653] doi:10.1038/s41467-024-53258-6 [paper, data]

Paraventricular hypothalamic RUVBL2 neurons suppress appetite by enhancing excitatory synaptic transmission in distinct neurocircuits.

Journal: Nature communications

Status: data only, 1 dataset cited

[23654] doi:10.1038/s41467-024-53308-z [paper, repository]

Expectancy-related changes in firing of dopamine neurons depend on hippocampus.

Journal: Nature communications

Authors' code: YouGTakahashi/HCx_Delay_Task (no license), zwzhang36/POSMDPs (no license)

Status: code verified, 10 files readable, 3 matches

[23655] doi:10.1038/s41593-024-01783-4 [paper, repository]

Rastermap: a discovery method for neural population recordings.

Journal: Nature neuroscience

Authors' code: mouseland/rastermap (GPL-3.0)

Status: code verified, 52 files readable, 34 matches

[23656] doi:10.1038/s41593-024-01787-0 [paper, repository]

Integrating brainstem and cortical functional architectures.

Journal: Nature neuroscience

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), LTS5/cmp (BSD-3-Clause), netneurolab/hansen_brainstemfc (no license)

Status: code verified, 128 files readable, 6 matches

[23657] doi:10.1038/s41598-024-72199-0 [paper]

Small world properties of schizophrenia and OCD patients derived from fNIRS based functional brain network connectivity metrics.

Journal: Scientific reports

Status: code on request

[23658] doi:10.1038/s41598-024-73789-8 [paper, repository]

Exploring neural markers of dereification in meditation based on EEG and personalized models of electrophysiological brain states.

Journal: Scientific reports

Authors' code: IoBT-VISTEC/EEG-Emotion-Recognition-INTERFACES-datasets (no license)

Status: code verified, 19 files readable

[23659] doi:10.1038/s41598-024-75091-z [paper, repository]

AnEEG: leveraging deep learning for effective artifact removal in EEG data.

Journal: Scientific reports

Authors' code: Bhabeshkalita/CleanSignal (no license)

Status: dead link

[23660] doi:10.1038/s41598-024-75986-x [paper, data]

Maternal e-cigarette exposure alters DNA methylome, site-specific CpG and CH methylation, and transcriptomic signatures in the neonatal brain.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23661] doi:10.1038/s42003-024-07013-8 [paper, repository]

Auditory pallial regulation of the social behavior network.

Journal: Communications biology

Authors' code: Zenodo 13862356 (CC-BY-4.0)

Status: code verified, 1 file readable

[23662] doi:10.1073/pnas.2401317121 [paper, repository]

Deciphering the neural responses to a naturalistic persuasive message.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: intoumanis/fMRI_persuasion (MIT)

Status: code verified, 24 files readable, 8 matches

[23663] doi:10.1097/j.pain.0000000000003445 [paper, data]

Harmonizing neuropathic pain research: outcomes of the London consensus meeting on peripheral tissue studies.

Journal: Pain

Status: data only, 1 dataset cited

[23664] doi:10.1126/sciadv.adl6120 [paper, repository]

Between-area communication through the lens of within-area neuronal dynamics.

Journal: Science advances

Authors' code: users.ece.cmu.edu/~byronyu/software.shtml (no license), ogozel/fa_Yu (no license), Zenodo 10680878 (CC-BY-4.0), ogozel/neuronal_dynamics (GPL-3.0)

Status: code verified, 64 files readable, 14 matches

[23665] doi:10.1126/sciadv.adp8054 [paper, repository]

The e-Flower: A hydrogel-actuated 3D MEA for brain spheroid electrophysiology.

Journal: Science advances

Authors' code: Zenodo 12543480 (CC-BY-4.0)

Status: code verified, 1 file readable

[23666] doi:10.1162/imag_a_00319 [paper, repository]

Brain morphometry and chronic inflammation in Bangladeshi children growing up in extreme poverty.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: TeddyTuresky/BrainMorphometry_Inflammation_BEANstudy_2021 (CC0-1.0), TeddyTuresky/BrainMorphometry_Inflammation_BEANstudy_2021(code) (no license)

Status: code verified, 6 files readable, 2 matches

[23667] doi:10.1186/s12014-024-09511-7 [paper, data]

Identification of novel proteins in inflammatory bowel disease based on the gut-brain axis: a multi-omics integrated analysis.

Journal: Clinical proteomics

Status: data only, 1 dataset cited

[23668] doi:10.1186/s13195-024-01594-6 [paper, repository]

Lower activity of cholesteryl ester transfer protein (CETP) and the risk of dementia: a Mendelian randomization analysis.

Journal: Alzheimer's research & therapy

Authors' code: SchmidtAF/cetp_dementia (no license)

Status: code verified, 5 files readable, 2 matches

[23669] doi:10.1186/s13293-024-00653-9 [paper, repository]

Sex differences in prelimbic cortex calcium dynamics during stress and fear learning.

Journal: Biology of sex differences

Authors' code: Anderolab/Anderolab (no license)

Status: code verified, 85 files readable, 4 matches

[23670] doi:10.1523/eneuro.0079-24.2024 [paper, repository]

NeuroART: Real-Time Analysis and Targeting of Neuronal Population Activity during Calcium Imaging for Informed Closed-Loop Experiments.

Journal: eNeuro

Authors' code: losertlab/NeuroART (no license)

Status: code verified, 1,804 files readable, 11 matches

[23671] doi:10.1523/eneuro.0118-24.2024 [paper, data]

Transcriptional Patterns in Stages of Alzheimer's Disease Are Cell-Type-Specific and Partially Converge with the Effects of Alcohol Use Disorder in Humans.

Journal: eNeuro

Status: data only, 1 dataset cited

[23672] doi:10.1523/jneurosci.0349-24.2024 [paper, repository]

Neuronal and Behavioral Responses to Naturalistic Texture Images in Macaque Monkeys.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF w3f7s (no license)

Status: code verified, 49 files readable, 1 match

[23673] doi:10.2147/ndt.s480782 [paper, data]

Overexpression of ATF4 Inhibits Ferroptosis to Alleviate Anxiety Disorders by Activating the TGF-β Signaling Pathway.

Journal: Neuropsychiatric disease and treatment

Status: data only, 1 dataset cited

[23674] doi:10.3389/fneur.2024.1380644 [paper]

Bipolar and Laplacian montages are suitable for high-gamma modulation language mapping with stereoelectroencephalography.

Journal: Frontiers in neurology

Status: code on request

[23675] doi:10.3390/microorganisms12102071 [paper, data]

Comparative Analysis of Fecal Microbiota Between Adolescents with Early-Onset Psychosis and Adults with Schizophrenia.

Journal: Microorganisms

Status: data only, 1 dataset cited

[23676] doi:10.7554/elife.90624 [paper, repository]

Supercomputer framework for reverse engineering firing patterns of neuron populations to identify their synaptic inputs.

Journal: eLife

Authors' code: modeldb:2017005 (no license)

Status: code verified

Tuesday, 15 October 2024 (23 papers)

[23677] doi:10.1016/j.celrep.2024.114860 [paper, repository]

Comprehensive mapping of sensory and sympathetic innervation of the developing kidney.

Journal: Cell reports

Authors' code: dataverse.unc.edu/dataverse/d_24_01486_obrienlab (no license)

Status: code verified

[23678] doi:10.1016/j.celrep.2024.114877 [paper]

Activity-assembled nBAF complex mediates rapid immediate early gene transcription by regulating RNA polymerase II productive elongation.

Journal: Cell reports

Status: code on request

[23679] doi:10.1016/j.crmeth.2024.100876 [paper, data]

An accelerated Parkinson's disease monkey model using AAV-α-synuclein plus poly(ADP-ribose).

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[23680] doi:10.1016/j.heliyon.2024.e39378 [paper, data]

Unveiling mitochondria as central components driving cognitive decline in alzheimer's disease through cross-transcriptomic analysis of hippocampus and entorhinal cortex microarray datasets.

Journal: Heliyon

Status: data only, 1 dataset cited

[23681] doi:10.1016/j.isci.2024.111152 [paper, repository]

Overcoming off-target optical stimulation-evoked cortical activity in the mouse brain <i>in vivo</i>.

Journal: iScience

Authors' code: Zenodo 13842774 (CC-BY-4.0), billkarsh/SpikeGLX (BSD-3-Clause), jenniferColonell/ecephys_spike_sorting (BSD-2-Clause), simonweiler/issue_opto_npx (no license)

Status: code verified, 490 files readable, 3 matches

[23682] doi:10.1038/s41380-024-02780-6 [paper, repository]

Convergent functional effects of antidepressants in major depressive disorder: a neuroimaging meta-analysis.

Journal: Molecular psychiatry

Authors' code: amnsbr/antidepressants_meta (no license)

Status: code verified, 20 files readable, 12 matches

[23683] doi:10.1038/s41597-024-03909-6 [paper, repository]

Comprehensive data for studying serum exosome microRNA transcriptome in Parkinson's disease patients.

Journal: Scientific data

Authors' code: SSaikiLab/SciData (no license)

Status: code verified, 5 files readable

[23684] doi:10.1038/s41598-024-74867-7 [paper, data]

Aperiodic neural activity reflects metacontrol in task-switching.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23685] doi:10.1038/s41598-024-75218-2 [paper]

Spatial localisation and sensing in two dimensions via metasurfaces.

Journal: Scientific reports

Status: code on request

[23686] doi:10.1038/s41598-024-75511-0 [paper, repository]

Semantic inhibition impairment in college students with depressive states as evidenced by EEG and pupillometry during the hayling task.

Journal: Scientific reports

Authors' code: drive.google.com/file/d (no license)

Status: code verified

[23687] doi:10.1038/s42003-024-06991-z [paper, repository]

Functional MRI of imprinting memory in awake newborn domestic chicks.

Journal: Communications biology

Authors' code: mehdibehroozi/Imprinting-fMRI (no license)

Status: code verified, 11 files readable, 5 matches

[23688] doi:10.1088/1741-2552/ad7760 [paper, repository]

The effects of neuron morphology and spatial distribution on the selectivity of dorsal root ganglion stimulation.

Journal: Journal of neural engineering

Authors' code: modeldb:2018004 (no license)

Status: code verified

[23689] doi:10.1097/j.pain.0000000000003435 [paper, repository]

Spinal lumbar Urocortin 3-expressing neurons are associated with both scratching and Compound 48/80-induced sensations.

Journal: Pain

Authors' code: HannahMWeman/ucn3-analysis-zeisel-et-al-spinal-cord (no license)

Status: code verified, 2 files readable, 2 matches

[23690] doi:10.1162/imag_a_00311 [paper, repository]

Laminar multi-contrast fMRI at 7T allows differentiation of neuronal excitation and inhibition underlying positive and negative BOLD responses.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: herrlich10/mripy (MIT), loft-lab.org/index-5.html (no license)

Status: code verified, 70 files readable, 4 matches

[23691] doi:10.1162/imag_a_00312 [paper, repository]

Alpha-band fluctuations represent behaviorally relevant excitability changes as a consequence of top-down guided spatial attention in a probabilistic spatial cueing design.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 6ygvm (no license)

Status: code verified, 11 files readable, 4 matches

[23692] doi:10.1162/imag_a_00314 [paper, repository]

The effects of locus coeruleus optogenetic stimulation on global spatiotemporal patterns in rats.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: tsb46/complex_pca (MIT)

Status: code verified, 5 files readable

[23693] doi:10.1162/imag_a_00315 [paper]

Predicting the macrovascular contribution to resting-state fMRI functional connectivity at 3 Tesla: A model-informed approach.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[23694] doi:10.1186/s12987-024-00582-0 [paper, repository]

Modeling CSF circulation and the glymphatic system during infusion using subject specific intracranial pressures and brain geometries.

Journal: Fluids and barriers of the CNS

Authors' code: larswd/MPET-model-iNPH (CC-BY-4.0)

Status: code verified, 19 files readable, 4 matches

[23695] doi:10.1371/journal.pcbi.1012478 [paper, repository]

Regularizing hyperparameters of interacting neural signals in the mouse cortex reflect states of arousal.

Journal: PLoS computational biology

Authors' code: CBS-NCB/ALD_hyperparameters (CC0-1.0)

Status: code verified, 2 files readable

[23696] doi:10.1371/journal.pcbi.1012527 [paper, repository]

A novel classification framework for genome-wide association study of whole brain MRI images using deep learning.

Journal: PLoS computational biology

Authors' code: shaojunyu/2d-image-gwas (no license)

Status: code verified, 8 files readable, 3 matches

[23697] doi:10.3389/fncom.2024.1478193 [paper, data]

Multi-scale asynchronous correlation and 2D convolutional autoencoder for adolescent health risk prediction with limited fMRI data.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[23698] doi:10.3390/s24206645 [paper, data]

Cross-Task Differences in Frontocentral Cortical Activations for Dynamic Balance in Neurotypical Adults.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[23699] doi:10.7554/elife.98844 [paper, repository]

I_h block reveals separation of timescales in pyloric rhythm response to temperature changes in <i>Cancer borealis</i>.

Journal: eLife

Authors' code: sg-s/crabsort (GPL-3.0), doi:10.5061/dryad.1rn8pk129 (no license)

Status: code verified, 152 files readable

Monday, 14 October 2024 (31 papers)

[23700] doi:10.1002/mco2.768 [paper, repository]

Alterations in the axon initial segment plasticity is involved in early pathogenesis in Alzheimer's disease.

Journal: MedComm

Authors' code: Wistomize/neuronmodel (Apache-2.0)

Status: code verified, 2 files readable

[23701] doi:10.1016/j.nbas.2024.100126 [paper, repository]

Brain network correlates of affective symptoms in aMCI.

Journal: Aging brain

Authors' code: adamgeorgeturnbull/BEEM (no license)

Status: code verified, 12 files readable, 1 match

[23702] doi:10.1016/j.neuron.2024.08.021 [paper, repository]

Synaptic neoteny of human cortical neurons requires species-specific balancing of SRGAP2-SYNGAP1 cross-inhibition.

Journal: Neuron

Authors' code: lahammond/respan (GPL-3.0)

Status: code verified, 29 files readable

[23703] doi:10.1038/s41398-024-03143-z [paper]

Divergent gene expression patterns in alcohol and opioid use disorders lead to consistent alterations in functional networks within the dorsolateral prefrontal cortex.

Journal: Translational psychiatry

Status: code on request

[23704] doi:10.1038/s41467-024-52938-7 [paper, repository]

Cell type and regulatory analysis in amphioxus illuminates evolutionary origin of the vertebrate head.

Journal: Nature communications

Authors' code: jakubovciak/Vertebrate_Head (GPL-3.0)

Status: code verified, 22 files readable, 14 matches

[23705] doi:10.1038/s41467-024-53034-6 [paper, data]

Pre-operative stereotactic radiosurgery and peri-operative dexamethasone for resectable brain metastases: a two-arm pilot study evaluating clinical outcomes and immunological correlates.

Journal: Nature communications

Status: data only, 1 dataset cited

[23706] doi:10.1038/s41467-024-53128-1 [paper, repository]

The structure and statistics of language jointly shape cross-frequency neural dynamics during spoken language comprehension.

Journal: Nature communications

Authors' code: Hugo-W/feature-PAC (MPL-2.0), Zenodo 12667684 (CC-BY-4.0)

Status: code verified, 15 files readable, 11 matches

[23707] doi:10.1038/s41593-024-01774-5 [paper, repository]

Integrated multimodal cell atlas of Alzheimer's disease.

Journal: Nature neuroscience

Authors' code: marianogabitto/ChromA (LGPL-2.1), AllenInstitute/SEA-AD_2024 (other), Zenodo 21828429 (CC-BY-4.0), Zenodo 21828430 (CC-BY-4.0)

Status: code verified, 1,376 files readable, 25 matches

[23708] doi:10.1038/s41598-024-72659-7 [paper, data]

Mutual gaze and movement synchrony boost observers' enjoyment and perception of togetherness when watching dance duets.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23709] doi:10.1038/s41598-024-74837-z [paper, data]

Comprehensive risk factor-based nomogram for predicting one-year mortality in patients with sepsis-associated encephalopathy.

Journal: Scientific reports

Status: data only, 2 datasets cited

[23710] doi:10.1038/s41598-024-75263-x [paper, data]

EEG-based emotional valence and emotion regulation classification: a data-centric and explainable approach.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23711] doi:10.1038/s42003-024-07016-5 [paper, repository]

Knockout of a single Pax6 gene (toy but not ey) leads to compound eye deficiency and small head in honeybees.

Journal: Communications biology

Authors' code: gpertea/gffcompare (MIT), hxfen999/Bee_RNAseq_code (no license)

Status: code verified, 35 files readable, 3 matches

[23712] doi:10.1038/s44321-024-00151-w [paper, data]

Unraveling autophagic imbalances and therapeutic insights in Mecp2-deficient models.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[23713] doi:10.1093/braincomms/fcae367 [paper, repository]

Simulated resections and responsive neurostimulator placement can optimize postoperative seizure outcomes when guided by fast ripple networks.

Journal: Brain communications

Authors' code: pennmem/neurorad_pipeline (GPL-3.0), shenweiss/frsvmsim (no license)

Status: code verified, 43 files readable, 3 matches

[23714] doi:10.1111/psyp.14696 [paper, repository]

Linking brain-heart interactions to emotional arousal in immersive virtual reality.

Journal: Psychophysiology

Authors' code: afourcade/evrbhi (GPL-3.0)

Status: code verified, 427 files readable, 29 matches

[23715] doi:10.1111/psyp.14708 [paper, data]

Revealing the different levels of action monitoring in visuomotor transformation task: Evidence from decomposition of cortical potentials.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[23716] doi:10.1159/000541918 [paper, data]

The Influence of Birth Weight, Socio-Economic Status, and Adult Health on Brain Volumes during Ageing.

Journal: Neuroepidemiology

Status: data only, 1 dataset cited

[23717] doi:10.1162/imag_a_00313 [paper]

ECCENTRIC: A fast and unrestrained approach for high-resolution in vivo metabolic imaging at ultra-high field MR.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[23718] doi:10.1186/s12888-024-06096-1 [paper, data]

Unraveling the brain dynamics of Depersonalization-Derealization Disorder: a dynamic functional network connectivity analysis.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[23719] doi:10.1186/s13195-024-01597-3 [paper]

Elevated Aβ aggregates in feces from Alzheimer's disease patients: a proof-of-concept study.

Journal: Alzheimer's research & therapy

Status: code on request

[23720] doi:10.1371/journal.pbio.3002837 [paper, repository]

Functional networks of inhibitory neurons orchestrate synchrony in the hippocampus.

Journal: PLoS biology

Authors' code: Zenodo 12899622 (CC-BY-4.0), cossartlab/bocchio-vorobyev-et-al-2023 (GPL-3.0)

Status: code verified, 292 files readable, 19 matches

[23721] doi:10.1371/journal.pbio.3002849 [paper, repository]

The human olfactory bulb communicates perceived odor valence to the piriform cortex in the gamma band and receives a refined representation back in the beta band.

Journal: PLoS biology

Authors' code: OSF fqw2m (no license)

Status: code verified, 18 files readable, 5 matches

[23722] doi:10.1371/journal.pcbi.1012474 [paper, data]

Roles and interplay of reinforcement-based and error-based processes during reaching and gait in neurotypical adults and individuals with Parkinson's disease.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[23723] doi:10.1371/journal.pcbi.1012508 [paper, repository]

Dynamics of morphogen source formation in a growing tissue.

Journal: PLoS computational biology

Authors' code: supp:PMC11501038/pcbi.1012508.s009.zip (no license), supp:PMC11501038/pcbi.1012508.s010.zip (no license)

Status: code verified, 15 files readable, 1 match

[23724] doi:10.1371/journal.pone.0312109 [paper, data]

Using multivariate partial least squares on fNIRS data to examine load-dependent brain-behaviour relationships in aging.

Journal: PloS one

Status: data only, 1 dataset cited

[23725] doi:10.3389/fimmu.2024.1434697 [paper, repository]

Second-line monotherapy with a PD-1/CTLA-4 inhibitor effectively treated multiple brain and lung metastases of cervical cancer: a case report.

Journal: Frontiers in immunology

Authors' code: BostonGene (no license)

Status: code verified

[23726] doi:10.3389/fncel.2024.1477989 [paper, data]

A novel loss-of-function <i>KCNB1</i> gene variant in a twin with global developmental delay and seizures.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[23727] doi:10.3389/fphar.2024.1472468 [paper, data]

Identification and experimental validation of hub genes underlying depressive-like behaviors induced by chronic social defeat stress.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[23728] doi:10.3389/fpsyt.2024.1395243 [paper, repository]

Generation and discrimination of autism MRI images based on autoencoder.

Journal: Frontiers in psychiatry

Authors' code: Lyrae17514/Generation-and-Discrimination-of-Autism-MRI-Images-Based-on-Autoencoder (no license)

Status: code verified, 42 files readable, 2 matches

[23729] doi:10.3390/s24206614 [paper, repository]

Impact of Mask Type as Training Target for Speech Intelligibility and Quality in Cochlear-Implant Noise Reduction.

Journal: Sensors (Basel, Switzerland)

Authors' code: vmontazeri/cochlear-implant-simulation (MIT)

Status: code verified, 4 files readable, 1 match

[23730] doi:10.7554/elife.90100 [paper, repository]

Robust optogenetic inhibition with red-light-sensitive anion-conducting channelrhodopsins.

Journal: eLife

Authors' code: bejalab/acrs (GPL-3.0), teamprigge/lab_articles (no license), Zenodo 13905478 (CC-BY-4.0)

Status: code verified, 50 files readable

Sunday, 13 October 2024 (3 papers)

[23731] doi:10.1002/2211-5463.13904 [paper, data]

Hippocampal tau-induced GRIN3A deficiency in Alzheimer's disease.

Journal: FEBS open bio

Status: data only, 1 dataset cited

[23732] doi:10.1002/mco2.758 [paper, data]

Penfluridol inhibits melanoma growth and metastasis through enhancing von Hippel‒Lindau tumor suppressor-mediated cancerous inhibitor of protein phosphatase 2A (CIP2A) degradation.

Journal: MedComm

Status: data only, 1 dataset cited

[23733] doi:10.1016/j.heliyon.2024.e39340 [paper, data]

Sport training of axial rotation affects spatial ability: Evidence from behavior and fNIRS.

Journal: Heliyon

Status: data only, 2 datasets cited

Saturday, 12 October 2024 (11 papers)

[23734] doi:10.1002/alz.14315 [paper, repository]

Head-to-head comparison of leading blood tests for Alzheimer's disease pathology.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: WashUFluidBiomarkers/HeadToHeadBloodTestStudy (MIT)

Status: code verified, 16 files readable, 10 matches

[23735] doi:10.1016/j.bbi.2024.10.020 [paper, repository]

Ancient viral DNA in the human genome linked to neurodegenerative diseases.

Journal: Brain, behavior, and immunity

Authors' code: rodrigoduarte88/rTWAS_neurodegen (no license)

Status: code verified, 3 files readable

[23736] doi:10.1016/j.dcn.2024.101459 [paper, repository]

Leveraging mixed-effects location scale models to assess the ERP mismatch negativity's psychometric properties and trial-by-trial neural variability in toddler-mother dyads.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 4dwmg (no license), OSF bzfej (no license)

Status: code verified, 4 files readable, 7 matches

[23737] doi:10.1016/j.heliyon.2024.e39329 [paper]

Research trends and hotspots in fundus image segmentation from 2007 to 2023: A bibliometric analysis.

Journal: Heliyon

Status: code on request

[23738] doi:10.1038/s41380-024-02777-1 [paper]

Gene expression differences associated with alcohol use disorder in human brain.

Journal: Molecular psychiatry

Status: code on request

[23739] doi:10.1038/s41467-024-53085-9 [paper, data]

Zika viruses encode 5' upstream open reading frames affecting infection of human brain cells.

Journal: Nature communications

Status: data only, 2 datasets cited

[23740] doi:10.1038/s41467-024-53173-w [paper, repository]

Bilateral interactions of optic-flow sensitive neurons coordinate course control in flies.

Journal: Nature communications

Authors' code: joesch-lab/Bilateral-course-control (no license)

Status: code verified, 232 files readable, 18 matches

[23741] doi:10.1038/s41598-024-74745-2 [paper, data]

Association between brain resting-state functional activities and migraine: a bidirectional mendelian randomization study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23742] doi:10.1101/2024.10.09.617389 [paper, data]

Traveling Waves in the Human Visual Cortex: an MEG-EEG Model-Based Approach

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[23743] doi:10.1101/2024.10.11.617777 [paper, repository]

Defacing biases visual quality assessments of structural MRI

Journal: bioRxiv (preprint)

Authors' code: OSF 8mcyz (no license), Zenodo 6856482 (other-open), OSF edx6t (no license), poldracklab/pydeface (MIT)

Status: code verified, 13 files readable

[23744] doi:10.3390/neurosci5040033 [paper, repository]

Resting-State Functional Connectivity Predicts Attention Problems in Children: Evidence from the ABCD Study.

Journal: NeuroSci

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

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