Every paper, by date: page 107

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 107 of 200: 11 October 2024 to 2 October 2024.

Friday, 11 October 2024 (28 papers)

[23745] doi:10.1002/alz.14303 [paper, repository]

Implementation and validation of face de-identification (de-facing) in ADNI4.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: BIC-MNI/bic-pipelines (no license)

Status: code verified, 42 files readable

[23746] doi:10.1007/s11682-024-00930-6 [paper, data]

Sex influences whether hippocampal volumes mediate the relationship between depression and cognition in older adults without dementia: A UK Biobank study.

Journal: Brain imaging and behavior

Status: code on request, 2 datasets cited

[23747] doi:10.1007/s12035-024-04530-9 [paper, repository]

Oscillatory DeltaC Expression in Neural Progenitors Primes the Prototype of Forebrain Development.

Journal: Molecular neurobiology

Authors' code: mastodon-sc/mastodon (BSD-2-Clause)

Status: code verified, 673 files readable

[23748] doi:10.1007/s12672-024-01430-1 [paper, data]

RBMS1 interference inhibits malignant progression of glioblastoma cells and promotes ferroptosis.

Journal: Discover oncology

Status: data only, 1 dataset cited

[23749] doi:10.1016/j.celrep.2024.114813 [paper, repository]

The medial entorhinal cortex encodes multisensory spatial information.

Journal: Cell reports

Authors' code: Zenodo 13737336 (CC-BY-4.0), Zenodo 13737335 (CC-BY-4.0), gulab-nih/nguyenetalcellreports2024 (no license)

Status: code verified, 84 files readable, 1 match

[23750] doi:10.1016/j.heliyon.2024.e39039 [paper, data]

Identification of potential biomarkers and drug of ischemic stroke in patients with COVID-19 through machine learning.

Journal: Heliyon

Status: data only, 1 dataset cited

[23751] doi:10.1016/j.isci.2024.111126 [paper, data]

Dung beetle optimization algorithm-based hybrid deep learning model for ultra-short-term PV power prediction.

Journal: iScience

Status: data only, 1 dataset cited

[23752] doi:10.1016/j.isci.2024.111149 [paper]

Correlates of implicit semantic processing as revealed by representational similarity analysis applied to EEG.

Journal: iScience

Status: code on request

[23753] doi:10.1016/j.isci.2024.111155 [paper]

Adaptation and exogenous attention interact in the early visual cortex: A TMS study.

Journal: iScience

Status: code on request

[23754] doi:10.1016/j.isci.2024.111156 [paper]

SNARE protein SNAP25 regulates the chloride-transporter KCC2 in neurons.

Journal: iScience

Status: code on request

[23755] doi:10.1016/j.isci.2024.111158 [paper]

The node of Ranvier influences the <i>in vivo</i> axonal transport of mitochondria and signaling endosomes.

Journal: iScience

Status: code on request

[23756] doi:10.1021/acschemneuro.4c00367 [paper, data]

Interactions of Polychlorinated Biphenyls and Their Metabolites with the Brain and Liver Transcriptome of Female Mice.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[23757] doi:10.1038/s41419-024-07062-1 [paper]

NAD<sup>+</sup>-boosting agent nicotinamide mononucleotide potently improves mitochondria stress response in Alzheimer's disease via ATF4-dependent mitochondrial UPR.

Journal: Cell death & disease

Status: code on request

[23758] doi:10.1038/s41467-024-53101-y [paper, repository]

Learning quantum properties from short-range correlations using multi-task networks.

Journal: Nature communications

Authors' code: yzhuqici/learn_quantum_properties_from_local_correlation (no license)

Status: code verified, 8 files readable

[23759] doi:10.1038/s41467-024-53168-7 [paper, data]

Modelling human neuronal catecholaminergic pigmentation in rodents recapitulates age-related neurodegenerative deficits.

Journal: Nature communications

Status: data only, 1 dataset cited

[23760] doi:10.1038/s41565-024-01798-9 [paper, repository]

Magnetoelectric nanodiscs enable wireless transgene-free neuromodulation.

Journal: Nature nanotechnology

Authors' code: figshare 26778310 (MIT)

Status: code verified, 6 files readable, 3 matches

[23761] doi:10.1038/s41592-024-02454-9 [paper, repository]

Single-shot 20-fold expansion microscopy.

Journal: Nature methods

Authors' code: shiwei-w/20ExM (MIT)

Status: code verified, 114 files readable, 2 matches

[23762] doi:10.1038/s41598-024-75377-2 [paper, data]

The PANoptosis-related hippocampal molecular subtypes and key biomarkers in Alzheimer's disease patients.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23763] doi:10.1038/s42003-024-07019-2 [paper, data]

Neural activity for complex sounds in the marmoset anterior cingulate cortex.

Journal: Communications biology

Status: data only, 1 dataset cited

[23764] doi:10.1101/gr.279252.124 [paper, repository]

Genetics-driven risk predictions leveraging the Mendelian randomization framework.

Journal: Genome research

Authors' code: AIH-SGML/PRiMeR (GPL-3.0), Zenodo 13632773 (GPL-3.0)

Status: code verified, 48 files readable, 3 matches

[23765] doi:10.1126/sciadv.ado8837 [paper, repository]

Macroscale connectome topographical structure reveals the biomechanisms of brain dysfunction in Alzheimer's disease.

Journal: Science advances

Authors' code: juryxy/juspace (no license), mica-mni/micaopen (GPL-3.0), rmarkello/abagen (BSD-3-Clause)

Status: code verified, 454 files readable, 6 matches

[23766] doi:10.1159/000541908 [paper, data]

Ultrarare Variants in DNA Damage Repair Genes in Pediatric Acute-Onset Neuropsychiatric Syndrome or Acute Behavioral Regression in Neurodevelopmental Disorders.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[23767] doi:10.1186/s12916-024-03682-8 [paper, data]

Genetic architectures of the human hippocampus and those involved in neuropsychiatric traits.

Journal: BMC medicine

Status: data only, 1 dataset cited

[23768] doi:10.1186/s13023-024-03365-w [paper, data]

TARS2 c.470 C > G is a chinese-specific founder mutation in three unrelated families with mitochondrial encephalomyopathy.

Journal: Orphanet journal of rare diseases

Status: data only, 1 dataset cited

[23769] doi:10.1371/journal.pcbi.1011986 [paper, repository]

Bayesian inference of state feedback control parameters for fo perturbation responses in cerebellar ataxia.

Journal: PLoS computational biology

Authors' code: jessicagaines/1d-sfc (no license)

Status: code verified, 15 files readable, 6 matches

[23770] doi:10.3389/fcell.2024.1484880 [paper, data]

Multi-resolution visual Mamba with multi-directional selective mechanism for retinal disease detection.

Journal: Frontiers in cell and developmental biology

Status: data only, 2 datasets cited

[23771] doi:10.3389/fnins.2024.1471286 [paper, repository]

Altered brain texture features in end-stage renal disease patients: a voxel-based 3D brain texture analysis study.

Journal: Frontiers in neuroscience

Authors' code: Pedram-Parnianpour/3D-Texture-Analysis (GPL-3.0)

Status: code verified, 13 files readable, 1 match

[23772] doi:10.7554/elife.97602 [paper, repository]

Cell class-specific long-range axonal projections of neurons in mouse whisker-related somatosensory cortices.

Journal: eLife

Authors' code: Zenodo 13377319 (CC-BY-4.0)

Status: code verified

Thursday, 10 October 2024 (33 papers)

[23773] doi:10.1002/mp.17453 [paper, repository]

Assessing tumor microstructure with time-dependent diffusion imaging: Considerations and feasibility on clinical MRI and MRI-Linac.

Journal: Medical physics

Authors' code: mjokivuolle/Jokivuolle_MedPhys_2024 (no license)

Status: code verified, 3 files readable, 2 matches

[23774] doi:10.1007/s00406-024-01926-5 [paper, repository]

Intermittent theta burst stimulation in adolescents and young adults with depressive disorders: protocol of a randomized, sham-controlled study with a sequential Bayesian design for adaptive trials.

Journal: European archives of psychiatry and clinical neuroscience

Authors' code: OSF b397u (no license)

Status: code verified, 2 files readable, 3 matches

[23775] doi:10.1007/s11060-024-04849-2 [paper, repository]

Advanced imaging reveals enhanced malignancy in glioblastomas involving the subventricular zone: evidence of increased infiltrative growth and perfusion.

Journal: Journal of neuro-oncology

Authors' code: mmromero/dry (LGPL-3.0)

Status: code verified, 9 files readable, 2 matches

[23776] doi:10.1007/s11357-024-01371-1 [paper, data]

Uncovering mediational pathways behind racial and socioeconomic disparities in brain volumes: insights from the UK Biobank study.

Journal: GeroScience

Status: code on request, 2 datasets cited

[23777] doi:10.1007/s12021-024-09678-2 [paper, repository]

Stitcher: A Surface Reconstruction Tool for Highly Gyrified Brains.

Journal: Neuroinformatics

Authors' code: hmynssen/Stitcher (MIT), neurabenn/precon_all (MIT)

Status: code verified, 35 files readable, 1 match

[23778] doi:10.1016/j.celrep.2024.114848 [paper, data]

Post-stroke hippocampal neurogenesis is impaired by microvascular dysfunction and PI3K signaling in cerebral amyloid angiopathy.

Journal: Cell reports

Status: code on request, 1 dataset cited

[23779] doi:10.1016/j.heliyon.2024.e39203 [paper]

Crocin nano-chitosan-coated compound mitigates hippocampal blood-brain barrier disruption, anxiety, and cognitive deficits in chronic immobilization stress-induced rats.

Journal: Heliyon

Status: code on request

[23780] doi:10.1016/j.ijchp.2024.100509 [paper, repository]

Neural underpinnings of a two-phase memory suppression process in the neural response to self-related and observed perspective views.

Journal: International journal of clinical and health psychology : IJCHP

Authors' code: canlab/CanlabCore (GPL-2.0)

Status: code verified, 2,000 files readable, 6 matches

[23781] doi:10.1016/j.isci.2024.111147 [paper, data]

Resolving transitions between distinct phases of memory consolidation at high resolution in <i>Caenorhabditis elegans</i>.

Journal: iScience

Status: code on request, 1 dataset cited

[23782] doi:10.1016/j.mex.2024.102997 [paper, repository]

Combination of motor, sensory and affective tasks in an EEG paradigm for children with developmental disabilities.

Journal: MethodsX

Authors' code: fms205/arthromotor (no license)

Status: code verified, 4 files readable, 1 match

[23783] doi:10.1016/j.stemcr.2024.09.005 [paper]

Validation of non-destructive morphology-based selection of cerebral cortical organoids by paired morphological and single-cell RNA-seq analyses.

Journal: Stem cell reports

Status: code on request

[23784] doi:10.1038/s41387-024-00343-w [paper]

Impaired brain glucose metabolism in glucagon-like peptide-1 receptor knockout mice.

Journal: Nutrition & diabetes

Status: code on request

[23785] doi:10.1038/s41598-024-75259-7 [paper, repository]

EEG synchronization patterns during a Go/No-Go task in individuals with aphasia in subacute and chronic phases of stroke.

Journal: Scientific reports

Authors' code: pypi.org/project/bctpy (no license)

Status: code verified

[23786] doi:10.1038/s41598-024-75445-7 [paper]

Deep learning-based detection of affected body parts in Parkinson's disease and freezing of gait using time-series imaging.

Journal: Scientific reports

Status: code on request

[23787] doi:10.1038/s41598-024-75463-5 [paper, data]

Impact of background input on memory consolidation.

Journal: Scientific reports

Status: data only, 2 datasets cited

[23788] doi:10.1038/s42003-024-06934-8 [paper, repository]

Processing of social closeness in the human brain.

Journal: Communications biology

Authors' code: compuneuropsychiatrylabeinkerem/publications_data (MIT), Zenodo 13799793 (CC-BY-4.0)

Status: code verified, 31 files readable, 12 matches

[23789] doi:10.1038/s42003-024-06956-2 [paper, data]

The genetics of spatiotemporal variation in cortical thickness in youth.

Journal: Communications biology

Status: code on request, 1 dataset cited

[23790] doi:10.1038/s42003-024-06965-1 [paper, repository]

Enhanced efficiency in the bilingual brain through the inter-hemispheric cortico-cerebellar pathway in early second language acquisition.

Journal: Communications biology

Authors' code: zchuri/BilingualBrainNet (GPL-3.0)

Status: code verified, 9 files readable, 2 matches

[23791] doi:10.1038/s42003-024-06990-0 [paper, repository]

Sex-specific single cell-level transcriptomic signatures of Rett syndrome disease progression.

Journal: Communications biology

Authors' code: osmansharifi/snRNA-seq-pipeline (no license), Zenodo 13761244 (CC-BY-4.0)

Status: code verified, 79 files readable, 10 matches

[23792] doi:10.1073/pnas.2409395121 [paper, repository]

Tipping the balance between fairness and efficiency through temporoparietal stimulation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF qkd2m (no license)

Status: empty repository

[23793] doi:10.1080/07853890.2024.2405079 [paper, data]

Necroptosis-based glioblastoma prognostic subtypes: implications for TME remodeling and therapy response.

Journal: Annals of medicine

Status: data only, 2 datasets cited

[23794] doi:10.1089/whr.2024.0076 [paper, data]

Gut &lt;i&gt;Akkermansia muciniphila&lt;/i&gt;, &lt;i&gt;Prevotellaceae&lt;/i&gt;, and &lt;i&gt;Enterobacteriaceae&lt;/i&gt; spp. as Possible Markers in Women-Related Nutritional and Clinical Trials: Familial Mediterranean Fever Disease.

Journal: Women's health reports (New Rochelle, N.Y.)

Status: data only, 1 dataset cited

[23795] doi:10.1093/braincomms/fcae344 [paper]

Functional and free-water imaging in rapid eye movement behaviour disorder and Parkinson's disease.

Journal: Brain communications

Status: code on request

[23796] doi:10.1093/pnasnexus/pgae457 [paper, data]

Neuron-specific deficiency of autophagy increases neuronal loss in traumatic brain injury.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[23797] doi:10.1111/epi.18141 [paper, repository]

Electroencephalographic source imaging of spikes with concurrent high-frequency oscillations is concordant with the clinical ground truth.

Journal: Epilepsia

Authors' code: bfinl/FAST-IRES (CC-BY-SA-4.0)

Status: code verified, 20 files readable

[23798] doi:10.1126/science.adq1456 [paper, repository]

Somatic mosaicism in schizophrenia brains reveals prenatal mutational processes.

Journal: Science (New York, N.Y.)

Authors' code: bsmn/bsmn-pipeline (no license), bintriz/bsmn-aws-setup (no license), tewhey-lab/MPRA_oligo_barcode_pipeline (MIT), tewhey-lab/MPRAmodel (no license), emauryg/scz_somatic_snv (no license)

Status: code verified, 109 files readable, 10 matches

[23799] doi:10.1162/imag_a_00307 [paper, repository]

Bayesian inference of frequency-specific functional connectivity in MEG imaging using a spectral graph model.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: JINhuaqing/SBI-SGM-FC_paper (no license)

Status: code verified, 37 files readable, 4 matches

[23800] doi:10.1186/s12974-024-03249-7 [paper, data]

Selective neuronal expression of progranulin is sufficient to provide neuroprotective and anti-inflammatory effects after traumatic brain injury.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[23801] doi:10.1186/s13024-024-00753-5 [paper, data]

Multi-analyte proteomic analysis identifies blood-based neuroinflammation, cerebrovascular and synaptic biomarkers in preclinical Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[23802] doi:10.1186/s13059-024-03407-3 [paper, repository]

Spatiotemporal modeling reveals high-resolution invasion states in glioblastoma.

Journal: Genome biology

Authors' code: MorrissyLab/GBM_Xenograft_SpatialTranscriptomics (MIT)

Status: code verified, 16 files readable, 9 matches

[23803] doi:10.1371/journal.pcbi.1012460 [paper, repository]

Compression-based inference of network motif sets.

Journal: PLoS computational biology

Authors' code: gitlab.pasteur.fr/sincobe/brain-motifs (no license)

Status: dead link

[23804] doi:10.1371/journal.pcbi.1012521 [paper, repository]

EEG microstate transition cost correlates with task demands.

Journal: PLoS computational biology

Authors' code: gbarzon/brain_control_cost (no license), Zenodo 13709700 (CC-BY-4.0)

Status: code verified, 12 files readable

[23805] doi:10.3390/brainsci14101014 [paper, repository]

Pre-Stimulus Activity of Left and Right TPJ in Linguistic Predictive Processing: A MEG Study.

Journal: Brain sciences

Authors' code: cran.r-project.org/package=erpr (no license)

Status: code verified

Wednesday, 9 October 2024 (35 papers)

[23806] doi:10.1002/advs.202407870 [paper]

All-Ferroelectric Spiking Neural Networks via Morphotropic Phase Boundary Neurons.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[23807] doi:10.1016/j.heliyon.2024.e38997 [paper, data]

Utilizing customized CNN for brain tumor prediction with explainable AI.

Journal: Heliyon

Status: data only, 2 datasets cited

[23808] doi:10.1016/j.isci.2024.111083 [paper]

Serotonin acts through multiple cellular targets during an olfactory critical period.

Journal: iScience

Status: code on request

[23809] doi:10.1016/j.isci.2024.111108 [paper]

Preclinical validation of human recombinant glutamate-oxaloacetate transaminase for the treatment of acute ischemic stroke.

Journal: iScience

Status: code on request

[23810] doi:10.1016/j.isci.2024.111111 [paper, repository]

Linking the microarchitecture of neurotransmitter systems to large-scale MEG resting state networks.

Journal: iScience

Authors' code: netneurolab/hansen_receptors (CC-BY-NC-SA-4.0), palvalab/receptor_centrality (no license)

Status: code verified, 15 files readable, 4 matches

[23811] doi:10.1016/j.isci.2024.111118 [paper, data]

<i>Drosophila</i> p53 tumor suppressor directly activates conserved asymmetric stem cell division regulators.

Journal: iScience

Status: code on request, 1 dataset cited

[23812] doi:10.1016/j.isci.2024.111123 [paper]

The secretory pathway in Tetrahymena is organized for efficient constitutive secretion at ciliary pockets.

Journal: iScience

Status: code on request

[23813] doi:10.1016/j.lanepe.2024.101063 [paper, data]

Development of a prognostic model to predict 90-day mortality in hospitalised cancer patients (PROMISE tool): a prospective observational study.

Journal: The Lancet regional health. Europe

Status: data only, 1 dataset cited

[23814] doi:10.1016/j.omtn.2024.102355 [paper]

Exploring the therapeutic potential of sγPNA-141: Pharmacodynamics and mechanistic insights during ischemic stroke recovery.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[23815] doi:10.1016/j.xhgg.2024.100363 [paper]

Togaram1 is expressed in the neural tube and its absence causes neural tube closure defects.

Journal: HGG advances

Status: code on request

[23816] doi:10.1021/jacs.4c08446 [paper, data]

Light-Activated Agonist-Potentiator of GABA&lt;sub&gt;A&lt;/sub&gt; Receptors for Reversible Neuroinhibition in Wildtype Mice.

Journal: Journal of the American Chemical Society

Status: data only, 2 datasets cited

[23817] doi:10.1038/s41398-024-03139-9 [paper, repository]

Multi-omics profiling of DNA methylation and gene expression alterations in human cocaine use disorder.

Journal: Translational psychiatry

Authors' code: lzillich/BA9_multi_omics_cocaine (no license)

Status: code verified, 17 files readable, 23 matches

[23818] doi:10.1038/s41467-024-52444-w [paper, data]

CRISPR-edited human ES-derived oligodendrocyte progenitor cells improve remyelination in rodents.

Journal: Nature communications

Status: data only, 1 dataset cited

[23819] doi:10.1038/s41586-024-08016-5 [paper, repository]

Single-neuron representations of odours in the human brain.

Journal: Nature

Authors' code: marcelkehl/HumanOdorRepresentations (MIT)

Status: code verified, 44 files readable, 11 matches

[23820] doi:10.1038/s41586-024-08028-1 [paper]

A modular circuit coordinates the diversification of courtship strategies.

Journal: Nature

Status: code on request

[23821] doi:10.1038/s41586-024-08030-7 [paper, repository]

Temporally distinct 3D multi-omic dynamics in the developing human brain.

Journal: Nature

Authors' code: luogenomics/demultiplexing (no license), luogenomics/Taurus-MH (MIT), luogenomics/snm3Cseq_feature_processing (no license), cfg00/MERFISH_Chromatin_Tracing_2024 (no license)

Status: code verified, 24 files readable, 4 matches

[23822] doi:10.1038/s41586-024-08034-3 [paper, repository]

One-shot entorhinal maps enable flexible navigation in novel environments.

Journal: Nature

Authors' code: cortex-lab/phy (BSD-3-Clause), giocomolab/mec-rapid-learning (no license), cortex-lab/allenCCF (no license)

Status: code verified, 232 files readable, 2 matches

[23823] doi:10.1038/s41597-024-03915-8 [paper, repository]

DERCo: A Dataset for Human Behaviour in Reading Comprehension Using EEG.

Journal: Scientific data

Authors' code: Tayerquach/DERCo (no license)

Status: code verified, 7 files readable, 1 match

[23824] doi:10.1038/s41598-024-72640-4 [paper, repository]

Importance estimate of features via analysis of their weight and gradient profile.

Journal: Scientific reports

Authors' code: thehcclab/pairwise-importance-estimate-extension (CC-BY-NC-ND-4.0)

Status: code verified, 76 files readable, 4 matches

[23825] doi:10.1038/s41598-024-73211-3 [paper, repository]

Music therapy with adult burn patients in the intensive care unit: short-term analysis of electrophysiological signals during music-assisted relaxation.

Journal: Scientific reports

Authors' code: jgcordoba/BurnICU_MusicTherapy_Signals (MIT)

Status: code verified, 26 files readable, 4 matches

[23826] doi:10.1038/s41598-024-73536-z [paper, repository]

Joint hybrid recursive feature elimination based channel selection and ResGCN for cross session MI recognition.

Journal: Scientific reports

Authors' code: figshare 1 (no license)

Status: dead link

[23827] doi:10.1038/s42003-024-06924-w [paper]

Interplay between preclinical indices of obesity and neural signatures of fluid intelligence in youth.

Journal: Communications biology

Status: code on request

[23828] doi:10.1038/s42003-024-06940-w [paper, repository]

Single-cell somatic copy number variants in brain using different amplification methods and reference genomes.

Journal: Communications biology

Authors' code: robertaboukhalil/ginkgo (BSD-2-Clause), navinlabcode/copykit (other), gnu.org/software/bash (no license), rstudio.com (no license), zgturan/scWGA_comp (no license), Zenodo 10019431 (CC-BY-4.0), srbehera/Brain_scWGA_comparision (no license)

Status: code verified, 260 files readable, 12 matches

[23829] doi:10.1038/s42003-024-06994-w [paper, repository]

Glial cells undergo rapid changes following acute chemogenetic manipulation of cortical layer 5 projection neurons.

Journal: Communications biology

Authors' code: figshare 26963674 (CC-BY-4.0)

Status: code verified, 97 files readable, 4 matches

[23830] doi:10.1039/d4tb01117a [paper, repository]

&lt;i&gt;In vivo&lt;/i&gt; photopharmacological inhibition of hippocampal activity &lt;i&gt;via&lt;/i&gt; multimodal probes - perspective and opening steps on experimental and computational challenges.

Journal: Journal of materials chemistry. B

Authors' code: ankrh/MCmatlab (GPL-3.0)

Status: code verified, 98 files readable, 3 matches

[23831] doi:10.1093/braincomms/fcae301 [paper, repository]

Increased beta synchronization underlies perception-action hyperbinding in functional movement disorders.

Journal: Brain communications

Authors' code: OSF 7ke6r (no license)

Status: empty repository

[23832] doi:10.1093/braincomms/fcae357 [paper, repository]

Axonal damage and inflammation response are biological correlates of decline in small-world values: a cohort study in autosomal dominant Alzheimer's disease.

Journal: Brain communications

Authors' code: bettytijms/Single_Subject_Grey_Matter_Networks (MIT)

Status: code verified, 15 files readable, 1 match

[23833] doi:10.1126/sciadv.adp9150 [paper, data]

Bidirectional regulation of motor circuits using magnetogenetic gene therapy.

Journal: Science advances

Status: data only, 1 dataset cited

[23834] doi:10.1162/imag_a_00310 [paper, repository]

Mental rotation-related neural interactions between gender and cognitive strategy.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: cbedetti/Dcm2Bids (GPL-3.0), nadiaBRS/Mental-rotation-related-neural-interactions-between-gender-and-cognitive-strategy (no license)

Status: code verified, 34 files readable, 3 matches

[23835] doi:10.1186/s13100-024-00330-z [paper, data]

Transposable Element (TE) insertion predictions from RNAseq inputs and TE impact on RNA splicing and gene expression in Drosophila brain transcriptomes.

Journal: Mobile DNA

Status: data only, 1 dataset cited

[23836] doi:10.1523/jneurosci.0591-24.2024 [paper, repository]

γ1 GABA&lt;sub&gt;A&lt;/sub&gt; Receptors in Spinal Nociceptive Circuits.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: dcolam/Cluster-Analysis-Plugin (MIT)

Status: code verified, 20 files readable

[23837] doi:10.3389/fimmu.2024.1467858 [paper]

Application of a risk score model based on glycosylation-related genes in the prognosis and treatment of patients with low-grade glioma.

Journal: Frontiers in immunology

Status: data only

[23838] doi:10.3389/fnagi.2024.1434589 [paper, repository]

Machine learning models for diagnosing Alzheimer's disease using brain cortical complexity.

Journal: Frontiers in aging neuroscience

Authors' code: salan668/FAE (Apache-2.0)

Status: code verified, 95 files readable, 3 matches

[23839] doi:10.3390/cells13191665 [paper, data]

Human Umbilical Cord-Mesenchymal Stem Cells Promote Extracellular Matrix Remodeling in Microglia.

Journal: Cells

Status: data only, 1 dataset cited

[23840] doi:10.7554/elife.98949 [paper, data]

Transcriptional responses in a mouse model of silicone wire embolization induced acute retinal artery ischemia and reperfusion.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 8 October 2024 (26 papers)

[23841] doi:10.1007/s00234-024-03475-z [paper, repository]

Diffusion MRI is superior to quantitative T2-FLAIR mismatch in predicting molecular subtypes of human non-enhancing gliomas.

Journal: Neuroradiology

Authors' code: MIC-DKFZ/HD-BET (Apache-2.0)

Status: code verified, 7 files readable, 1 match

[23842] doi:10.1007/s00285-024-02144-2 [paper, repository]

Calibration of stochastic, agent-based neuron growth models with approximate Bayesian computation.

Journal: Journal of mathematical biology

Authors' code: Zenodo 13810423 (CC-BY-4.0)

Status: code verified

[23843] doi:10.1016/j.xcrm.2024.101754 [paper]

Activated sympathetic nerve post stroke downregulates Toll-like receptor 5 and disrupts the gut mucosal barrier.

Journal: Cell reports. Medicine

Status: code on request

[23844] doi:10.1021/acschemneuro.4c00047 [paper, data]

Transcriptome-Wide Profiling of Nascent RNA in Neurons with Enriched H3K27ac Signal Elevates eRNA Identification Efficiency.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[23845] doi:10.1038/s41398-024-03138-w [paper]

Importin α4 deficiency induces psychiatric disorder-related behavioral deficits and neuroinflammation in mice.

Journal: Translational psychiatry

Status: code on request

[23846] doi:10.1038/s41588-024-01939-9 [paper, repository]

GWAS of multiple neuropathology endophenotypes identifies new risk loci and provides insights into the genetic risk of dementia.

Journal: Nature genetics

Authors' code: Zenodo 11089995 (CC-BY-4.0), lincoln-shade/np_phewas (no license)

Status: code verified, 382 files readable, 27 matches

[23847] doi:10.1038/s41591-024-03286-y [paper, repository]

Prediction of brain metastasis development with DNA methylation signatures.

Journal: Nature medicine

Authors' code: patilvikas/brainmetsprediction (no license)

Status: code verified, 6 files readable

[23848] doi:10.1038/s41598-024-74706-9 [paper, data]

A double-layered fully automated insomnia identification model employing synthetic data generation using MCSA and CTGAN with single-channel EEG signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23849] doi:10.1038/s41598-024-74766-x [paper, data]

Atypical gut microbiota composition in a mouse model of developmental stuttering.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23850] doi:10.1039/d4cb00107a [paper, data]

Fluorescence lifetime imaging unravels the pathway of glioma cell death upon hypericin-induced photodynamic therapy.

Journal: RSC chemical biology

Status: data only, 1 dataset cited

[23851] doi:10.1073/pnas.2320805121 [paper, repository]

Adolescent alcohol consumption predicted by differences in electrophysiological functional connectivity and neuroanatomy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF r5u4s (no license), rbruna/meeg_analysis (GPL-3.0)

Status: code verified, 489 files readable, 10 matches

[23852] doi:10.1111/psyp.14707 [paper, repository]

Increased visual alpha-band activity during self-paced finger tapping does not affect early visual stimulus processing.

Journal: Psychophysiology

Authors' code: OSF mxr89 (no license)

Status: code verified, 13 files readable, 5 matches

[23853] doi:10.1117/1.nph.11.4.045003 [paper]

&lt;i&gt;In vivo&lt;/i&gt; volumetric analysis of retinal vascular hemodynamics in mice with spatio-temporal optical coherence tomography.

Journal: Neurophotonics

Status: code on request

[23854] doi:10.1117/1.nph.11.4.045004 [paper, repository]

Ecological functional near-infrared spectroscopy in mobile children: using short separation channels to correct for systemic contamination during naturalistic neuroimaging.

Journal: Neurophotonics

Authors' code: OSF wyp4s (no license)

Status: empty repository

[23855] doi:10.1136/bmjopen-2023-078609 [paper, data]

Is cardiovascular risk profiling from UK Biobank retinal images using explicit deep learning estimates of traditional risk factors equivalent to actual risk measurements? A prospective cohort study design.

Journal: BMJ open

Status: data only, 1 dataset cited

[23856] doi:10.1186/s12859-024-05936-x [paper, repository]

NeuroimaGene: an R package for assessing the neurological correlates of genetically regulated gene expression.

Journal: BMC bioinformatics

Authors' code: xbledsoe/NeuroimaGene_R (GPL-3.0)

Status: code verified, 14 files readable, 9 matches

[23857] doi:10.1186/s12950-024-00412-y [paper, data]

Locomotor and gait changes in the LPS model of neuroinflammation are correlated with inflammatory cytokines in blood and brain.

Journal: Journal of inflammation (London, England)

Status: data only, 1 dataset cited

[23858] doi:10.1186/s13024-024-00756-2 [paper, data]

α-Synuclein pathology disrupts mitochondrial function in dopaminergic and cholinergic neurons at-risk in Parkinson's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[23859] doi:10.1186/s13024-024-00757-1 [paper, data]

Heparin-enriched plasma proteome is significantly altered in Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[23860] doi:10.1186/s13287-024-03955-2 [paper, data]

Genetically engineered human induced pluripotent stem cells for the production of brain-targeting extracellular vesicles.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[23861] doi:10.1371/journal.pbio.3002797 [paper, repository]

Longitudinal single-subject neuroimaging study reveals effects of daily environmental, physiological, and lifestyle factors on functional brain connectivity.

Journal: PLoS biology

Authors' code: Zenodo 13208496 (CC-BY-4.0), Zenodo 13208811 (CC-BY-4.0), Zenodo 13208812 (CC-BY-4.0), anatomomi/externalfactors_on_functionalconnectivity (Apache-2.0)

Status: code verified, 158 files readable, 20 matches

[23862] doi:10.1371/journal.pbio.3002818 [paper, data]

The expectations humans have of a pleasurable sensation asymmetrically shape neuronal responses and subjective experiences to hot sauce.

Journal: PLoS biology

Status: data only, 1 dataset cited

[23863] doi:10.3389/fnhum.2024.1476944 [paper, repository]

Revisiting the earliest hyperscanning study: power and functional connectivity in the alpha band may link brains far apart.

Journal: Frontiers in human neuroscience

Authors' code: tolgaozkurt/twineegspecanalysis (no license)

Status: code verified, 7 files readable, 2 matches

[23864] doi:10.3389/fnins.2024.1443752 [paper, data]

Investigating the effect of template head models on Event-Related Potential source localization: a simulation and real-data study.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[23865] doi:10.3390/children11101221 [paper]

Differential Neural Mechanisms of Feedback Processing in Children with Developmental Language Disorder: An Examination of Midfrontal Theta Connectivity.

Journal: Children (Basel, Switzerland)

Status: code on request

[23866] doi:10.3758/s13415-024-01231-7 [paper, data]

Pre-choice midbrain fluctuations affect self-control in food choice: A functional magnetic resonance imaging (fMRI) study.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request, 1 dataset cited

Monday, 7 October 2024 (25 papers)

[23867] doi:10.1002/epi4.13050 [paper, repository]

Locus coeruleus co-activation patterns at rest show higher state persistence in patients with dissociative seizures: A Pilot Study.

Journal: Epilepsia open

Authors' code: webersamantha/PCA_CAP_SW (no license)

Status: code verified, 195 files readable, 4 matches

[23868] doi:10.1002/mrm.30329 [paper, repository]

Bilateral orthogonality generative acquisitions method for homogeneous T 2 * images using parallel transmission at 7 T.

Journal: Magnetic resonance in medicine

Authors' code: utsouthwestern.edu/about-us/administrative-offices (no license)

Status: code verified

[23869] doi:10.1038/s41366-024-01644-x [paper, repository]

Perspectives on obesity imaging: [&lt;sup&gt;18&lt;/sup&gt;F]2FNQ1P a specific 5-HT&lt;sub&gt;6&lt;/sub&gt; brain PET radiotracer.

Journal: International journal of obesity (2005)

Authors' code: Zenodo 4700238 (CC-BY-4.0)

Status: empty repository

[23870] doi:10.1038/s41467-024-52886-2 [paper, repository]

Transcript errors generate amyloid-like proteins in huwman cells.

Journal: Nature communications

Authors' code: jfgout/circseq-seqan2 (BSD-3-Clause), Zenodo 7591325 (other-open)

Status: code verified, 36 files readable, 2 matches

[23871] doi:10.1038/s41598-024-72982-z [paper, repository]

Machine learning-based real-time anomaly detection using data pre-processing in the telemetry of server farms.

Journal: Scientific reports

Authors' code: VDanielL/AnDePeD (GPL-3.0)

Status: code verified, 132 files readable, 24 matches

[23872] doi:10.1038/s44318-024-00231-0 [paper, data]

TRPC5 controls the adrenaline-mediated counter regulation of hypoglycemia.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[23873] doi:10.1038/s44318-024-00263-6 [paper, data]

O-GlcNAcylation of circadian clock protein Bmal1 impairs cognitive function in diabetic mice.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[23874] doi:10.1073/pnas.2315160121 [paper, data]

Propofol-mediated loss of consciousness disrupts predictive routing and local field phase modulation of neural activity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[23875] doi:10.1073/pnas.2317881121 [paper, repository]

The topology and geometry of neural representations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doerlbh/TopologicalRSA (no license)

Status: code verified, 5 files readable, 1 match

[23876] doi:10.1073/pnas.2407246121 [paper, repository]

The perivascular space is a conduit for cerebrospinal fluid flow in humans: A proof-of-principle report.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: eayamamoto/IT-gadolinium (no license)

Status: code verified, 3 files readable

[23877] doi:10.1073/pnas.2409636121 [paper, data]

Neurotransmitter release is triggered by a calcium-induced rearrangement in the Synaptotagmin-1/SNARE complex primary interface.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[23878] doi:10.1073/pnas.2411459121 [paper, data]

The cerebellum acts as the analog to the medial temporal lobe for sensorimotor memory.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[23879] doi:10.1093/braincomms/fcae354 [paper, repository]

Non-rapid eye movement sleep slow-wave activity features are associated with amyloid accumulation in older adults with obstructive sleep apnoea.

Journal: Brain communications

Authors' code: bnelair/best-toolbox (BSD-3-Clause)

Status: code verified, 86 files readable, 9 matches

[23880] doi:10.1093/braincomms/fcae356 [paper, repository]

Individualized cortical gyrification in neonates with congenital heart disease.

Journal: Brain communications

Authors' code: ralidimitrova/GPR_NeoVols (MIT)

Status: code verified, 3 files readable

[23881] doi:10.1113/jp286263 [paper, repository]

Kif1a and intact microtubules maintain synaptic-vesicle populations at ribbon synapses in zebrafish hair cells.

Journal: The Journal of physiology

Authors' code: doi:10.5061/dryad.pg4f4qs03 (no license), OSF rvyfz (no license)

Status: code verified, 5 files readable, 4 matches

[23882] doi:10.1162/imag_a_00303 [paper, repository]

Motion-invariant variational autoencoding of brain structural connectomes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: yzhang511/inv-vae (MIT)

Status: code verified, 31 files readable, 1 match

[23883] doi:10.1162/imag_a_00304 [paper, repository]

Automated segmentation of midbrain nuclei using deep learning and multisequence MRI: A longitudinal study on iron accumulation with age.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ffalahati/midbrain_segmentation (no license)

Status: empty repository, 1 file readable

[23884] doi:10.1162/imag_a_00308 [paper, repository]

Combining the benefits of 3D acquisitions and spiral readouts for VASO fMRI at UHF.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: monreal93/3D_SOSP_fMRI (MIT)

Status: code verified, 114 files readable, 8 matches

[23885] doi:10.1186/s40364-024-00662-1 [paper, repository]

Single-cell RNA sequencing identifies a subtype of FN1 + tumor-associated macrophages associated with glioma recurrence and as a biomarker for immunotherapy.

Journal: Biomarker research

Authors' code: lilab-bcb/cirrocumulus (BSD-3-Clause)

Status: code verified, 167 files readable

[23886] doi:10.1371/journal.pcbi.1012475 [paper, repository]

Reverse-engineered models reveal differential membrane properties of autonomic and cutaneous unmyelinated fibers.

Journal: PLoS computational biology

Authors' code: gitlab.oit.duke.edu/bjt20/thio_cfiber (other)

Status: code verified, 138 files readable, 4 matches

[23887] doi:10.3171/case24139 [paper, repository]

Advanced tractography-guided laser ablation of a perirolandic long-term epilepsy-associated tumor: illustrative case.

Journal: Journal of neurosurgery. Case lessons

Authors' code: DevelopmentalImagingMCRI/karawun (Apache-2.0)

Status: code verified, 11 files readable

[23888] doi:10.3390/s24196466 [paper, data]

Transforming Motor Imagery Analysis: A Novel EEG Classification Framework Using AtSiftNet Method.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[23889] doi:10.7150/thno.100802 [paper, data]

Whole-body fluorescence cryotomography identifies a fast-acting, high-contrast, durable contrast agent for fluorescence-guided surgery.

Journal: Theranostics

Status: data only, 1 dataset cited

[23890] doi:10.7150/thno.95766 [paper, data]

Hypoxia-driven M2-polarized macrophages facilitate the epithelial-mesenchymal transition of glioblastoma via extracellular vesicles.

Journal: Theranostics

Status: data only, 1 dataset cited

[23891] doi:10.7554/elife.90465 [paper, repository]

Robust, fast and accurate mapping of diffusional mean kurtosis.

Journal: eLife

Authors' code: m-farquhar/subdiffusiondki (BSD-3-Clause)

Status: code verified, 11 files readable, 2 matches

Sunday, 6 October 2024 (2 papers)

[23892] doi:10.1038/s41467-024-53092-w [paper, data]

Selective vulnerability of parvocellular oxytocin neurons in social dysfunction.

Journal: Nature communications

Status: data only, 1 dataset cited

[23893] doi:10.1038/s41538-024-00322-6 [paper, repository]

Use of physiologically based kinetic modeling to predict neurotoxicity and genotoxicity of methylglyoxal in humans.

Journal: NPJ science of food

Authors' code: figshare 27160080 (CC-BY-4.0)

Status: empty repository

Saturday, 5 October 2024 (12 papers)

[23894] doi:10.1016/j.dib.2024.110994 [paper, data]

Motion artifact contaminated multichannel EEG dataset.

Journal: Data in brief

Status: data only, 3 datasets cited

[23895] doi:10.1016/j.isci.2024.111110 [paper, data]

Overactive PKA signaling underlies the hyperalgesia in an ADHD mouse model.

Journal: iScience

Status: code on request, 1 dataset cited

[23896] doi:10.1016/j.nsa.2024.104094 [paper]

Neurovascular coupling of striatal dopamine D&lt;sub&gt;2/3&lt;/sub&gt; receptor availability and perfusion using simultaneous PET/MR in humans.

Journal: Neuroscience applied

Status: code on request

[23897] doi:10.1038/s41398-024-03121-5 [paper, repository]

Genetic and clinical correlates of two neuroanatomical AI dimensions in the Alzheimer's disease continuum.

Journal: Translational psychiatry

Authors' code: zhijian-yang/SurrealGAN (MIT)

Status: code verified, 15 files readable, 2 matches

[23898] doi:10.1038/s41467-024-52762-z [paper, repository]

Concerted transcriptional regulation of the morphogenesis of hypothalamic neurons by ONECUT3.

Journal: Nature communications

Authors' code: Harkany-Lab/Zupancic_2023 (no license)

Status: code verified, 50 files readable, 2 matches

[23899] doi:10.1038/s41467-024-52815-3 [paper, data]

Hypothalamus-sympathetic-liver axis mediates the early phase of stress-induced hyperglycemia in the male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[23900] doi:10.1038/s41467-024-52874-6 [paper, data]

NPC1 links cholesterol trafficking to microglial morphology via the gastrosome.

Journal: Nature communications

Status: data only, 1 dataset cited

[23901] doi:10.1038/s41467-024-52982-3 [paper, data]

Multifunctional human visual pathway-replicated hardware based on 2D materials.

Journal: Nature communications

Status: code on request, 1 dataset cited

[23902] doi:10.1038/s41467-024-52998-9 [paper, data]

Cryo-EM investigation of ryanodine receptor type 3.

Journal: Nature communications

Status: data only, 1 dataset cited

[23903] doi:10.1038/s41598-024-74152-7 [paper, data]

Docosahexaenoic acid (DHA) is a driving force regulating gene expression in bluefin tuna (Thunnus thynnus) larvae development.

Journal: Scientific reports

Status: data only, 1 dataset cited

[23904] doi:10.1038/s42003-024-06969-x [paper, data]

Heterogenous brain activations across individuals localize to a common network.

Journal: Communications biology

Status: code on request, 2 datasets cited

[23905] doi:10.1111/epi.18136 [paper, data]

Matrix-assisted laser desorption/ionization mass spectrometry imaging as a new tool for molecular histopathology in epilepsy surgery.

Journal: Epilepsia

Status: data only, 2 datasets cited

Friday, 4 October 2024 (28 papers)

[23906] doi:10.1002/cphc.202400265 [paper, data]

Synaptic Response of Fluidic Nanopores: The Connection of Potentiation with Hysteresis.

Journal: Chemphyschem : a European journal of chemical physics and physical chemistry

Status: data only, 2 datasets cited

[23907] doi:10.1007/s10548-024-01081-z [paper, repository]

Music Familiarization Elicits Functional Connectivity Between Right Frontal/Temporal and Parietal Areas in the Theta and Alpha Bands.

Journal: Brain topography

Authors' code: Zenodo 4358978 (other-open)

Status: code verified, 2 files readable

[23908] doi:10.1016/j.eclinm.2024.102873 [paper, repository]

The global, regional, and national patterns of change in the burden of congenital birth defects, 1990-2021: an analysis of the global burden of disease study 2021 and forecast to 2040.

Journal: EClinicalMedicine

Authors' code: ghdx.healthdata.org/record/ihme-data (no license)

Status: code verified

[23909] doi:10.1016/j.heliyon.2024.e38938 [paper, data]

A convolutional neural network model detecting lasting behavioral changes in mice with kanamycin-induced unilateral inner ear dysfunction.

Journal: Heliyon

Status: data only, 2 datasets cited

[23910] doi:10.1016/j.xcrm.2024.101755 [paper]

De novo GTP synthesis is a metabolic vulnerability for the interception of brain metastases.

Journal: Cell reports. Medicine

Status: code on request

[23911] doi:10.1016/j.xcrm.2024.101771 [paper]

The sympathetic nervous system drives hyperinflammatory responses to Clostridioides difficile infection.

Journal: Cell reports. Medicine

Status: code on request

[23912] doi:10.1016/j.xpro.2024.103358 [paper, repository]

Protocol for live neuron imaging analysis of basal surface fraction and dynamic availability of the dopamine transporter using DAT-pHluorin.

Journal: STAR protocols

Authors' code: supp:PMC11490699/mmc1.zip (no license)

Status: empty repository

[23913] doi:10.1038/s41398-024-03113-5 [paper, data]

Deciphering autism heterogeneity: a molecular stratification approach in four mouse models.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[23914] doi:10.1038/s41467-024-52052-8 [paper, repository]

The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment.

Journal: Nature communications

Authors' code: PrachTecha/Hadjab_iPain (no license)

Status: code verified, 6 files readable, 4 matches

[23915] doi:10.1038/s41467-024-52875-5 [paper, data]

Plekhg5 controls the unconventional secretion of Sod1 by presynaptic secretory autophagy.

Journal: Nature communications

Status: data only, 1 dataset cited

[23916] doi:10.1038/s41531-024-00790-3 [paper, data]

Single-cell RNA sequencing reveals peripheral immunological features in Parkinson's Disease.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[23917] doi:10.1038/s42003-024-06731-3 [paper]

Two-photon all-optical neurophysiology for the dissection of larval zebrafish brain functional and effective connectivity.

Journal: Communications biology

Status: code on request

[23918] doi:10.1038/s42003-024-06878-z [paper, repository]

Preselection of potential target spaces based on partial information by the supplementary eye field.

Journal: Communications biology

Authors' code: Zenodo 13282931 (CC-BY-4.0)

Status: code verified

[23919] doi:10.1038/s42003-024-06980-2 [paper, repository]

Distinct visual processing networks for foveal and peripheral visual fields.

Journal: Communications biology

Authors' code: OSF sdgkr (no license)

Status: code verified, 5 files readable, 3 matches

[23920] doi:10.1038/s43856-024-00622-8 [paper, repository]

Parasagittal dural volume correlates with cerebrospinal fluid volume and developmental delay in children with autism spectrum disorder.

Journal: Communications medicine

Authors' code: figshare 24582369 (CC-BY-4.0)

Status: code verified

[23921] doi:10.1038/s44318-024-00241-y [paper, data]

Longitudinal autophagy profiling of the mammalian brain reveals sustained mitophagy throughout healthy aging.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[23922] doi:10.1073/pnas.2406010121 [paper, repository]

Synaptic weight dynamics underlying memory consolidation: Implications for learning rules, circuit organization, and circuit function.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: goldman-lab/consolidation-integration (BSD-3-Clause)

Status: code verified, 10 files readable, 2 matches

[23923] doi:10.1093/biomethods/bpae072 [paper]

Unpacking unstructured data: A pilot study on extracting insights from neuropathological reports of Parkinson's Disease patients using large language models.

Journal: Biology methods & protocols

Status: code on request

[23924] doi:10.1126/sciadv.ado3514 [paper, repository]

Cell type-specific epigenetic priming of gene expression in nucleus accumbens by cocaine.

Journal: Science advances

Authors' code: RRHO2/RRHO2 (GPL-3.0)

Status: code verified, 8 files readable

[23925] doi:10.1162/imag_a_00302 [paper, repository]

Context-dependent neural preparation for information relevance vs. probability.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: CIMCYC/MRI (no license), ChemaGP-UGR/AttExp_fMRI (no license)

Status: code verified, 11 files readable, 5 matches

[23926] doi:10.1186/s12864-024-10855-5 [paper, repository]

Leveraging explainable deep learning methodologies to elucidate the biological underpinnings of Huntington's disease using single-cell RNA sequencing data.

Journal: BMC genomics

Authors' code: pwner-web/DeepHD (no license)

Status: code verified, 9 files readable, 5 matches

[23927] doi:10.1186/s12911-024-02699-6 [paper, data]

Development of brain tumor radiogenomic classification using GAN-based augmentation of MRI slices in the newly released gazi brains dataset.

Journal: BMC medical informatics and decision making

Status: data only, 3 datasets cited

[23928] doi:10.1186/s12967-024-05678-7 [paper, data]

Epileptic seizure prediction via multidimensional transformer and recurrent neural network fusion.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[23929] doi:10.1186/s13229-024-00620-6 [paper, repository]

Structure-function coupling in white matter uncovers the hypoconnectivity in autism spectrum disorder.

Journal: Molecular autism

Authors' code: Jfortin1/ComBatHarmonization (no license), zhaolab205/ASD-FCT-DT-consistency (no license)

Status: code verified, 25 files readable, 1 match

[23930] doi:10.26508/lsa.202302545 [paper, data]

SLMAP3 is essential for neurulation through mechanisms involving cytoskeletal elements, ABP, and PCP.

Journal: Life science alliance

Status: data only, 1 dataset cited

[23931] doi:10.3390/molecules29194700 [paper, data]

The Effects of Omeprazole on the Neuron-like Spiking of the Electrical Potential of Proteinoid Microspheres.

Journal: Molecules (Basel, Switzerland)

Status: data only, 1 dataset cited

[23932] doi:10.7554/elife.86860 [paper, repository]

A chromatic feature detector in the retina signals visual context changes.

Journal: eLife

Authors' code: symphony-das.github.io (no license), Schwartz-AlaLaurila-Labs/sa-labs-extension (no license), eulerlab/rgc-natstim-model (no license)

Status: code verified, 189 files readable, 7 matches

[23933] doi:10.7554/elife.91634 [paper, repository]

The role of Imp and Syp RNA-binding proteins in precise neuronal elimination by apoptosis through the regulation of transcription factors.

Journal: eLife

Authors' code: Wenyue2022/smFish-analysis-source-code (GPL-3.0), Wenyue2022/PCCD-note-book (GPL-3.0)

Status: code verified, 197 files readable, 3 matches

Thursday, 3 October 2024 (23 papers)

[23934] doi:10.1016/j.eclinm.2024.102871 [paper]

Brain metastasis burden and management in patients with small cell lung cancer in Canada: a retrospective, population-based cohort study.

Journal: EClinicalMedicine

Status: code on request

[23935] doi:10.1016/j.stemcr.2024.09.001 [paper, repository]

Breaking the burst: Unveiling mechanisms behind fragmented network bursts in patient-derived neurons.

Journal: Stem cell reports

Authors' code: gitlab.utwente.nl/m7706783/fb_model (Apache-2.0)

Status: code verified, 5 files readable, 8 matches

[23936] doi:10.1038/s12276-024-01328-6 [paper, data]

An integrative single-cell atlas for exploring the cellular and temporal specificity of genes related to neurological disorders during human brain development.

Journal: Experimental & molecular medicine

Status: data only, 3 datasets cited

[23937] doi:10.1038/s41398-024-03119-z [paper]

Serum cytokines and inflammatory proteins in individuals with heroin use disorder: potential mechanistically based biomarkers for diagnosis.

Journal: Translational psychiatry

Status: code on request

[23938] doi:10.1038/s41467-024-52724-5 [paper, repository]

Neural pathways and computations that achieve stable contrast processing tuned to natural scenes.

Journal: Nature communications

Authors' code: silieslab/Gur-etal-2024 (no license)

Status: code verified, 48 files readable, 21 matches

[23939] doi:10.1038/s41467-024-52727-2 [paper, repository]

Excitation-inhibition imbalance in medial preoptic area circuits underlies chronic stress-induced depression-like states.

Journal: Nature communications

Authors' code: GuangWei-Zhang/Mouse-behavioral-annotation (no license), Zenodo 13381825 (CC-BY-4.0)

Status: code verified, 38 files readable

[23940] doi:10.1038/s41539-024-00271-5 [paper, repository]

A systematic review of observational practice for adaptation of reaching movements.

Journal: NPJ science of learning

Authors' code: Zenodo 12682543 (CC-BY-4.0)

Status: code verified, 1 file readable

[23941] doi:10.1038/s41562-024-01983-9 [paper, repository]

Theta phase precession supports memory formation and retrieval of naturalistic experience in humans.

Journal: Nature human behaviour

Authors' code: rutishauserlab/cogboundary-phasepre-release-NWB (BSD-3-Clause)

Status: code verified, 14 files readable, 5 matches

[23942] doi:10.1038/s41593-024-01766-5 [paper, repository]

Maintaining and updating accurate internal representations of continuous variables with a handful of neurons.

Journal: Nature neuroscience

Authors' code: HermundstadLab/DiscreteRingAttractor (MIT), Zenodo 12789923 (CC-BY-4.0)

Status: code verified, 68 files readable, 9 matches

[23943] doi:10.1038/s41597-024-03887-9 [paper, data]

EEG Dataset for the Recognition of Different Emotions Induced in Voice-User Interaction.

Journal: Scientific data

Status: data only, 1 dataset cited

[23944] doi:10.1038/s41698-024-00721-8 [paper, repository]

Molecular mechanisms and diagnostic model of glioma-related epilepsy.

Journal: NPJ precision oncology

Authors' code: OrigamiSheep/Epilepsy_CGGA (no license)

Status: code verified, 3 files readable, 2 matches

[23945] doi:10.1038/s42003-024-06921-z [paper, repository]

Stimulus duration encoding occurs early in the moth olfactory pathway.

Journal: Communications biology

Authors' code: Zenodo 13365266 (CC-BY-4.0), tom83b/moth-duration-encoding (no license)

Status: code verified, 24 files readable, 2 matches

[23946] doi:10.1038/s44298-024-00056-y [paper, repository]

Juruaça virus taxonomy, tolerance and resistance to infection, and inflammatory response modulation in murine model.

Journal: Npj viruses

Authors' code: rambaut/figtree (no license)

Status: code verified, 209 files readable, 1 match

[23947] doi:10.1117/1.nph.11.4.045001 [paper, repository]

Comparing different motion correction approaches for resting-state functional connectivity analysis with functional near-infrared spectroscopy data.

Journal: Neurophotonics

Authors' code: sbrigadoi/motionDetection (no license)

Status: code verified, 2 files readable

[23948] doi:10.1162/imag_a_00306 [paper, repository]

Superpixel-ComBat modeling: A joint approach for harmonization and characterization of inter-scanner variability in T1-weighted images.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ChangleChen/SPComBat (MIT)

Status: code verified, 30 files readable, 4 matches

[23949] doi:10.1186/s10194-024-01880-6 [paper, repository]

Phasic perfusion dynamics among migraine subtypes: a multimodel arterial spin labeling investigation.

Journal: The journal of headache and pain

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0)

Status: code verified, 50 files readable

[23950] doi:10.1186/s40708-024-00238-7 [paper, repository]

Ensemble of vision transformer architectures for efficient Alzheimer's Disease classification.

Journal: Brain informatics

Authors' code: snoushath/VIT-CNN-AD (no license)

Status: code verified, 2 files readable, 1 match

[23951] doi:10.1371/journal.pbio.3002836 [paper, repository]

Impaired motor-to-sensory transformation mediates auditory hallucinations.

Journal: PLoS biology

Authors' code: TTT-EEG/TTT-EEG (no license)

Status: code verified, 11 files readable, 1 match

[23952] doi:10.1371/journal.pcbi.1012481 [paper, repository]

Probing the link between vision and language in material perception using psychophysics and unsupervised learning.

Journal: PLoS computational biology

Authors' code: cl3789/Material-Morphing-toolkit-git (no license)

Status: code verified, 4 files readable, 1 match

[23953] doi:10.1371/journal.pone.0308388 [paper, repository]

Video-audio neural network ensemble for comprehensive screening of autism spectrum disorder in young children.

Journal: PloS one

Authors' code: AutismBrainBehavior/Audio-Neural-Network-ASD-screening (CC-BY-NC-SA-4.0)

Status: code verified, 10 files readable, 3 matches

[23954] doi:10.1371/journal.pone.0311164 [paper, repository]

GAN-WGCNA: Calculating gene modules to identify key intermediate regulators in cocaine addiction.

Journal: PloS one

Authors' code: baicalin/GAN-WGCNA (no license)

Status: code verified, 30 files readable, 8 matches

[23955] doi:10.1523/eneuro.0248-24.2024 [paper, repository]

Machine Learning Elucidates Electrophysiological Properties Predictive of Multi- and Single-Firing Human and Mouse Dorsal Root Ganglia Neurons.

Journal: eNeuro

Authors' code: PainLabUNM/Zurek_et_al_eNeuro_2024 (no license)

Status: code verified, 5 files readable, 2 matches

[23956] doi:10.3892/br.2024.1869 [paper, data]

Association of HHV‑6 reactivation and SLC6A3 (C>T, rs40184), BDNF (C>T, rs6265), and JARID2 (G>A, rs9383046) single nucleotide polymorphisms in depression.

Journal: Biomedical reports

Status: data only, 1 dataset cited

Wednesday, 2 October 2024 (36 papers, 12 on this page)

[23957] doi:10.1002/alz.14164 [paper, repository]

Widespread transposable element dysregulation in human aging brains with Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ChengF-Lab/alzteQTL (no license)

Status: code verified, 11 files readable, 2 matches

[23958] doi:10.1016/j.ajhg.2024.09.001 [paper, repository]

Cross-ancestry analysis of brain QTLs enhances interpretation of schizophrenia genome-wide association studies.

Journal: American journal of human genetics

Authors' code: liusihan/population-compare-pipeline (MIT)

Status: code verified, 23 files readable, 7 matches

[23959] doi:10.1016/j.isci.2024.111091 [paper, data]

Conversion of glioma cells into neuron-like cells by small molecules.

Journal: iScience

Status: code on request, 1 dataset cited

[23960] doi:10.1021/acs.jmedchem.4c01961 [paper, data]

Molecular Mechanisms of Methamphetamine-Induced Addiction via TAAR1 Activation.

Journal: Journal of medicinal chemistry

Status: data only, 7 datasets cited

[23961] doi:10.1038/s41398-024-03100-w [paper, data]

Nighttime-specific differential gene expression in suprachiasmatic nucleus and habenula is associated with resilience to chronic social stress.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[23962] doi:10.1038/s41398-024-03108-2 [paper]

COVID-19 related cognitive, structural and functional brain changes among Italian adolescents and young adults: a multimodal longitudinal case-control study.

Journal: Translational psychiatry

Status: code on request

[23963] doi:10.1038/s41467-024-49939-x [paper]

Fabric-based lamina emergent MXene-based electrode for electrophysiological monitoring.

Journal: Nature communications

Status: code on request

[23964] doi:10.1038/s41467-024-52721-8 [paper, repository]

Evolutionarily conserved fMRI network dynamics in the mouse, macaque, and human brain.

Journal: Nature communications

Authors' code: danielgb87/cmodes (no license)

Status: code verified, 94 files readable, 15 matches

[23965] doi:10.1038/s41467-024-52769-6 [paper, repository]

Diminished circadian and ultradian rhythms of human brain activity in pathological tissue in vivo.

Journal: Nature communications

Authors' code: cnnp-lab/DiminishedRhythmsPathology (CC0-1.0)

Status: code verified, 30 files readable, 6 matches

[23966] doi:10.1038/s41467-024-52778-5 [paper, repository]

Minimal exposure durations reveal visual processing priorities for different stimulus attributes.

Journal: Nature communications

Authors' code: OSF 9f2e8 (no license)

Status: empty repository

[23967] doi:10.1038/s41586-024-07558-y [paper, repository]

Neuronal wiring diagram of an adult brain.

Journal: Nature

Authors' code: navis-org/fafbseg-py (GPL-3.0), seung-lab/FlyConnectome (no license), CAVEconnectome (no license), murthylab/codex (Apache-2.0), Zenodo 8191725 (other-open), Zenodo 23398508 (MIT), Patternity/LiquidAion-Neural-Observatory (MIT), Zenodo 23265197 (MIT), Zenodo 23265198 (MIT), Zenodo 22998833 (MIT), professorwang/flybrain-banana-quest (MIT), Zenodo 22999542 (MIT), Zenodo 22998834 (MIT)

Status: code verified, 460 files readable, 11 matches

[23968] doi:10.1038/s41586-024-07686-5 [paper, repository]

Whole-brain annotation and multi-connectome cell typing of Drosophila.

Journal: Nature

Authors' code: navis-org/navis (GPL-3.0), schlegelp/navis-flybrains (GPL-3.0), flyconnectome/fafbseg-py (GPL-3.0), flyconnectome/cocoa (GPL-3.0), connectome-neuprint/neuprint-python (BSD-3-Clause), navis-org/navis-flybrains (GPL-3.0), natverse/nat.jrcbrains (other), Zenodo 23398508 (MIT), Patternity/LiquidAion-Neural-Observatory (MIT), Zenodo 23265197 (MIT), Zenodo 23265198 (MIT)

Status: code verified, 743 files readable, 9 matches

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