Every paper, by date: page 109

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 109 of 200: 27 September 2024 to 18 September 2024.

Friday, 27 September 2024 (40 papers, 19 on this page)

[24193] doi:10.1038/s41598-024-73694-0 [paper, repository]

The role of personality in social interaction perception: an ERP and source imaging study.

Journal: Scientific reports

Authors' code: CPernet/Robust-Correlations (GPL-2.0)

Status: code verified, 112 files readable, 2 matches

[24194] doi:10.1038/s44318-024-00252-9 [paper]

The TrkC-PTPσ complex governs synapse maturation and anxiogenic avoidance via synaptic protein phosphorylation.

Journal: The EMBO journal

Status: data only

[24195] doi:10.1093/braincomms/fcae320 [paper, repository]

The sixth sense: how much does interictal intracranial EEG add to determining the focality of epileptic networks?

Journal: Brain communications

Authors' code: ieeg-recon.readthedocs.io (no license), penn-cnt/Sixth_Sense (no license)

Status: code verified, 23 files readable, 5 matches

[24196] doi:10.1111/jns.12659 [paper, data]

Oxygen matters: Unraveling the role of oxygen in the neuronal response to cisplatin.

Journal: Journal of the peripheral nervous system : JPNS

Status: data only, 1 dataset cited

[24197] doi:10.1186/s12911-024-02683-0 [paper, data]

Late feature fusion using neural network with voting classifier for Parkinson's disease detection.

Journal: BMC medical informatics and decision making

Status: data only, 2 datasets cited

[24198] doi:10.1186/s12974-024-03235-z [paper, data]

Autophagy defects at weaning impair complement-dependent synaptic pruning and induce behavior deficits.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[24199] doi:10.1186/s12974-024-03238-w [paper]

Knockdown of microglial iron import gene, Slc11a2, worsens cognitive function and alters microglial transcriptional landscape in a sex-specific manner in the APP/PS1 model of Alzheimer's disease.

Journal: Journal of neuroinflammation

Status: data only

[24200] doi:10.1186/s40798-024-00744-2 [paper, repository]

Potential of Soft-Shelled Rugby Headgear to Lower Regional Brain Strain Metrics During Standard Drop Tests.

Journal: Sports medicine - open

Authors' code: Jilab-biomechanics/CNN-brain-strains (GPL-3.0)

Status: code verified, 11 files readable, 4 matches

[24201] doi:10.1371/journal.pcbi.1012471 [paper, repository]

The role of training variability for model-based and model-free learning of an arbitrary visuomotor mapping.

Journal: PLoS computational biology

Authors' code: OSF trjsg (no license)

Status: code verified, 12 files readable, 5 matches

[24202] doi:10.1371/journal.pone.0306498 [paper, data]

Proteomic analysis of dorsal root ganglia in a mouse model of paclitaxel-induced neuropathic pain.

Journal: PloS one

Status: data only, 1 dataset cited

[24203] doi:10.1371/journal.pone.0310748 [paper, repository]

An explainable ensemble approach for advanced brain tumor classification applying Dual-GAN mechanism and feature extraction techniques over highly imbalanced data.

Journal: PloS one

Authors' code: roypriyanka7/Brain-Tumor-Classification (no license)

Status: code verified, 20 files readable, 5 matches

[24204] doi:10.1523/eneuro.0091-24.2024 [paper, repository]

Reconstructing Spatiotemporal Trajectories of Visual Object Memories in the Human Brain.

Journal: eNeuro

Authors' code: rsagroup/rsatoolbox (MIT), markallenthornton/matlabtfce (MIT)

Status: code verified, 195 files readable, 2 matches

[24205] doi:10.3389/fphar.2024.1429177 [paper, data]

Unraveling the pathogenic mechanism of a novel filamin a frameshift variant in periventricular nodular heterotopia.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[24206] doi:10.3390/bioengineering11100967 [paper, data]

Integrating Electroencephalography Source Localization and Residual Convolutional Neural Network for Advanced Stroke Rehabilitation.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[24207] doi:10.3390/brainsci14100981 [paper, repository]

Enhanced Correlation between Arousal and Infra-Slow Brain Activity in Experienced Meditators.

Journal: Brain sciences

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause)

Status: code verified, 129 files readable, 1 match

[24208] doi:10.3390/ijms251910445 [paper, repository]

Circadian Rhythm Genes and Their Association with Sleep and Sleep Restriction.

Journal: International journal of molecular sciences

Authors' code: AdamWysokinski/research-data (CC-BY-NC-4.0)

Status: code verified, 3 files readable, 1 match

[24209] doi:10.7554/elife.96854 [paper, repository]

Task-dependent coarticulation of movement sequences.

Journal: eLife

Authors' code: figshare 24282418 (CC-BY-4.0)

Status: code verified

[24210] doi:10.7554/elife.97444 [paper, repository]

High-frequency terahertz stimulation alleviates neuropathic pain by inhibiting the pyramidal neuron activity in the anterior cingulate cortex of mice.

Journal: eLife

Authors' code: supp:PMC11434610/elife-97444-code1.zip (no license)

Status: code verified, 205 files readable

[24211] doi:10.7554/elife.98739 [paper, repository]

Reproducible, data-driven characterization of sleep based on brain dynamics and transitions from whole-night fMRI.

Journal: eLife

Authors' code: nilsyang/Codes (no license)

Status: code verified, 10 files readable, 5 matches

Thursday, 26 September 2024 (15 papers)

[24212] doi:10.1007/s00062-024-01461-9 [paper, repository]

An Artificial Intelligence Algorithm Integrated into the Clinical Workflow Can Ensure High Quality Acute Intracranial Hemorrhage CT Diagnostic.

Journal: Clinical neuroradiology

Authors' code: kaggle.com/competitions/rsna-intracranial-hemorrhage-detection (no license), SeuTao/RSNA2019_Intracranial-Hemorrhage-Detection (no license)

Status: code verified, 28 files readable, 1 match

[24213] doi:10.1007/s00429-024-02857-6 [paper]

White matter connectivity linked to novel word learning in children.

Journal: Brain structure & function

Status: code on request

[24214] doi:10.1016/j.cell.2024.08.049 [paper]

CSF proteomics identifies early changes in autosomal dominant Alzheimer's disease.

Journal: Cell

Status: code on request

[24215] doi:10.1016/j.cub.2024.08.014 [paper, repository]

Evolution of novel sensory organs in fish with legs.

Journal: Current biology : CB

Authors' code: Zenodo 7598955 (other-open), felixkrueger/trimgalore (GPL-3.0)

Status: code verified, 33 files readable

[24216] doi:10.1016/j.heliyon.2024.e38516 [paper, repository]

Metabolic dysfunction-associated steatotic liver disease is associated with effects on cerebral perfusion and white matter integrity.

Journal: Heliyon

Authors' code: miac-research/psmd (BSD-3-Clause)

Status: code verified, 3 files readable

[24217] doi:10.1016/j.xpro.2024.103334 [paper, repository]

Protocol to study oxygen dynamics in the in vivo mouse brain using bioluminescence microscopy.

Journal: STAR protocols

Authors' code: Zenodo 10629900 (CC-BY-4.0), Zenodo 12783958 (CC-BY-4.0), temp2spec/oxygendynamics_public (MIT)

Status: code verified, 54 files readable, 6 matches

[24218] doi:10.1017/pen.2024.3 [paper, data]

Reduced MMN-indexed auditory change detection in a non-clinical high schizotypy sample.

Journal: Personality neuroscience

Status: data only, 1 dataset cited

[24219] doi:10.1017/s0033291724002368 [paper, repository]

Unsupervised machine learning for identifying attention-deficit/hyperactivity disorder subtypes based on cognitive function and their implications for brain structure.

Journal: Psychological medicine

Authors' code: OSF nvwam (no license)

Status: code verified, 2 files readable, 5 matches

[24220] doi:10.1038/s42256-024-00903-w [paper, repository]

Development of AI-assisted microscopy frameworks through realistic simulation with pySTED.

Journal: Nature machine intelligence

Authors' code: FLClab/pySTED (CC-BY-4.0), FLClab/optim-sted (CC-BY-4.0), FLClab/gym-sted (CC-BY-4.0), FLClab/gym-sted-pfrl (CC-BY-4.0), Zenodo 13174019 (CC-BY-4.0), Zenodo 13175942 (CC-BY-4.0), Zenodo 13174021 (CC-BY-4.0), Zenodo 13174024 (CC-BY-4.0)

Status: code verified, 755 files readable, 10 matches

[24221] doi:10.1083/jcb.202405078 [paper]

Nuclei as mechanical bumpers during epithelial remodeling.

Journal: The Journal of cell biology

Status: code on request

[24222] doi:10.1186/s12964-024-01838-w [paper, data]

α-Klotho prevents diabetic retinopathy by reversing the senescence of macrophages.

Journal: Cell communication and signaling : CCS

Status: data only, 2 datasets cited

[24223] doi:10.1186/s40708-024-00236-9 [paper, repository]

Enhancing brain image quality with 3D U-net for stripe removal in light sheet fluorescence microscopy.

Journal: Brain informatics

Authors' code: changshanli/striperemoval (MIT)

Status: empty repository, 2 files readable

[24224] doi:10.3390/jcm13195747 [paper]

Routine ICU Surveillance after Brain Tumor Surgery: Patient Selection Using Machine Learning.

Journal: Journal of clinical medicine

Status: code on request

[24225] doi:10.7554/elife.94916 [paper, data]

Hippocampal-occipital connectivity reflects autobiographical memory deficits in aphantasia.

Journal: eLife

Status: data only, 1 dataset cited

[24226] doi:10.7717/peerj.18072 [paper, data]

Optimizing total RNA extraction method for human and mice samples.

Journal: PeerJ

Status: data only, 1 dataset cited

Wednesday, 25 September 2024 (34 papers)

[24227] doi:10.1002/1878-0261.13735 [paper, data]

CASCADES, a novel SOX2 super-enhancer-associated long noncoding RNA, regulates cancer stem cell specification and differentiation in glioblastoma.

Journal: Molecular oncology

Status: data only, 1 dataset cited

[24228] doi:10.1002/mrm.30298 [paper, data]

Investigating microstructural changes between in vivo and perfused ex vivo marmoset brains using oscillating gradient and b-tensor encoded diffusion MRI at 9.4 T.

Journal: Magnetic resonance in medicine

Status: data only, 1 dataset cited

[24229] doi:10.1016/j.celrep.2024.114740 [paper, repository]

Position-independent functional refinement within the vagus motor topographic map.

Journal: Cell reports

Authors' code: jboulanger91/neuro_red (no license)

Status: code verified, 8 files readable, 1 match

[24230] doi:10.1016/j.celrep.2024.114771 [paper]

Development of pial collaterals by extension of pre-existing artery tips.

Journal: Cell reports

Status: code on request

[24231] doi:10.1016/j.isci.2024.111030 [paper, repository]

MP: A steady-state visual evoked potential dataset based on multiple paradigms.

Journal: iScience

Authors' code: MULT-SA-SSVEP-Paradigm (no license)

Status: code verified

[24232] doi:10.1016/j.neuroimage.2024.120869 [paper, repository]

Relationship between central autonomic effective connectivity and heart rate variability: A Resting-state fMRI dynamic causal modeling study.

Journal: NeuroImage

Authors' code: fil.ion.ucl.ac.uk/spm (no license), translationalneuromodeling.org/tapas (no license)

Status: code verified

[24233] doi:10.1016/j.ynirp.2024.100219 [paper, data]

Music literacy shapes the specialization of a right hemispheric word reading area.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[24234] doi:10.1021/acs.jmedchem.4c01794 [paper, data]

First Demonstration of <i>In Vivo</i> PDE11A4 Target Engagement for Potential Treatment of Age-Related Memory Disorders.

Journal: Journal of medicinal chemistry

Status: data only, 2 datasets cited

[24235] doi:10.1038/s41586-024-07973-1 [paper]

Human hippocampal and entorhinal neurons encode the temporal structure of experience.

Journal: Nature

Status: code on request

[24236] doi:10.1038/s44319-024-00246-y [paper, data]

Kinesin-1 mediates proper ER folding of the Ca<sub>V</sub>1.2 channel and maintains mouse glucose homeostasis.

Journal: EMBO reports

Status: data only, 1 dataset cited

[24237] doi:10.1097/j.pain.0000000000003392 [paper, repository]

Decoding pain: uncovering the factors that affect the performance of neuroimaging-based pain models.

Journal: Pain

Authors' code: cocoanlab/humanfmri_preproc_bids (no license), maartenmennes/ICA-AROMA (Apache-2.0), canlab/CanlabCore (GPL-2.0), cocoanlab/cocoanCORE (GPL-3.0)

Status: code verified, 2,189 files readable, 10 matches

[24238] doi:10.1098/rsbl.2024.0299 [paper, data]

Polarized light detection in bumblebees varies with light intensity and is mediated by both the ocelli and compound eyes.

Journal: Biology letters

Status: data only, 7 datasets cited

[24239] doi:10.1098/rsos.232005 [paper, repository]

Amplitude modulation structure in French and German poetry: universal acoustic physical structures underpin different poetic rhythm structures.

Journal: Royal Society open science

Authors' code: OSF 9mtke (no license)

Status: empty repository

[24240] doi:10.1111/jnc.16225 [paper, repository]

The longitudinal behavioral effects of acute exposure to galactic cosmic radiation in female C57BL/6J mice: Implications for deep space missions, female crews, and potential antioxidant countermeasures.

Journal: Journal of neurochemistry

Authors' code: EischLab/ts-data-analysis-app (MIT), EischLab/19AFemalesSurvival (no license)

Status: code verified, 10 files readable, 6 matches

[24241] doi:10.1126/sciadv.adl1776 [paper, repository]

Contrastive learning explains the emergence and function of visual category-selective regions.

Journal: Science advances

Authors' code: jacob-prince/PROJECT_DNFFA (no license), jacob-prince/jsputils (no license)

Status: code verified, 61 files readable, 15 matches

[24242] doi:10.1126/sciadv.adm9582 [paper, data]

Skewed epithelial cell differentiation and premature aging of the thymus in the absence of vitamin D signaling.

Journal: Science advances

Status: data only, 1 dataset cited

[24243] doi:10.1126/sciadv.adp6038 [paper, repository]

Kappa opioids inhibit spinal output neurons to suppress itch.

Journal: Science advances

Authors' code: Zenodo 12005206 (CC-BY-4.0), Zenodo 12011425 (CC-BY-4.0), cawarwick/calciumimaginganalysis (no license)

Status: code verified, 27 files readable

[24244] doi:10.1162/imag_a_00283 [paper, repository]

A novel, robust, and portable platform for magnetoencephalography using optically-pumped magnetometers.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: SCColeman/EEG_beamformer (no license), HollySchofield/Schofield2024_novel_robust_platform_OPM (no license)

Status: code verified, 5 files readable, 2 matches

[24245] doi:10.1162/imag_a_00295 [paper, repository]

Charting the brain networks of impulsivity: Meta-analytic synthesis, functional connectivity modelling, and neurotransmitter associations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MartinGell/random_nets (no license), MartinGell/Impulsivity_networks (no license)

Status: code verified, 38 files readable, 6 matches

[24246] doi:10.1162/imag_a_00296 [paper, data]

Online functional connectivity analysis of large all-to-all networks in MNE Scan.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[24247] doi:10.1186/s13195-024-01574-w [paper]

Gene-variant specific effects of plasma amyloid-β levels in Swedish autosomal dominant Alzheimer disease.

Journal: Alzheimer's research & therapy

Status: code on request

[24248] doi:10.1523/eneuro.0191-24.2024 [paper, repository]

The Neural and Computational Architecture of Feedback Dynamics in Mouse Cortex during Stimulus Report.

Journal: eNeuro

Authors' code: simoneciceri/IAS_project (no license)

Status: code verified, 12 files readable, 2 matches

[24249] doi:10.3205/000334 [paper, repository]

Significance of EEG-electrode combinations while calculating filters with common spatial patterns.

Journal: German medical science : GMS e-journal

Authors' code: domwet/csp-research (BSD-3-Clause)

Status: code verified, 14 files readable, 1 match

[24250] doi:10.3389/fnagi.2024.1455020 [paper, data]

Functional activity, functional connectivity and complex network biomarkers of progressive hyposmia Parkinson's disease with no cognitive impairment: evidences from resting-state fMRI study.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[24251] doi:10.3389/fnins.2024.1417996 [paper, repository]

Subjective visual sensitivity in neurotypical adults: insights from a magnetic resonance spectroscopy study.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 12208682 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[24252] doi:10.3389/fnins.2024.1449181 [paper, repository]

Exploring neural oscillations during speech perception via surrogate gradient spiking neural networks.

Journal: Frontiers in neuroscience

Authors' code: idiap/sparse (BSD)

Status: code verified, 12 files readable, 16 matches

[24253] doi:10.3389/fnut.2024.1387514 [paper, repository]

Genetic associations with neural reward responsivity to food cues in children.

Journal: Frontiers in nutrition

Authors' code: Zenodo 3934294 (other-open), meyer-lab-cshl/plinkqc (other)

Status: code verified, 111 files readable

[24254] doi:10.3389/fnut.2024.1456111 [paper, repository]

Maternal oral probiotic use is associated with decreased breastmilk inflammatory markers, infant fecal microbiome variation, and altered recognition memory responses in infants-a pilot observational study.

Journal: Frontiers in nutrition

Authors' code: CGaleLab/Probiotic_Microbiome_Infant_Neurodevelopment (no license)

Status: code verified, 1 file readable

[24255] doi:10.3389/fpsyg.2024.1407458 [paper, repository]

An open-access database of video stimuli for action observation research in neuroimaging settings: psychometric evaluation and motion characterization.

Journal: Frontiers in psychology

Authors' code: OSF zexc4 (no license)

Status: code verified, 5 files readable, 4 matches

[24256] doi:10.3389/frai.2024.1381290 [paper, repository]

Efficient incremental training using a novel NMT-SMT hybrid framework for translation of low-resource languages.

Journal: Frontiers in artificial intelligence

Authors' code: kaggle.com/xenomorph/indian-politics-news-2018 (no license)

Status: dead link

[24257] doi:10.3390/foods13193051 [paper, data]

Antistress Effects of Terpinen-4-ol and Compounds of Mimicked Yuzu Synthetic Fragrance in Humans and Mice.

Journal: Foods (Basel, Switzerland)

Status: data only, 1 dataset cited

[24258] doi:10.3390/jcm13195704 [paper, data]

Prognostic Evaluation of Disorders of Consciousness by Using Resting-State fMRI: A Systematic Review.

Journal: Journal of clinical medicine

Status: data only, 2 datasets cited

[24259] doi:10.3758/s13415-024-01216-6 [paper, repository]

Functional brain connectivity changes associated with day-to-day fluctuations in affective states.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: pnplab/day2day_paper (no license)

Status: code verified, 6 files readable, 2 matches

[24260] doi:10.7554/elife.88608 [paper, repository]

A neural network model of differentiation and integration of competing memories.

Journal: eLife

Authors' code: PrincetonCompMemLab/neurodiff_simulations (Apache-2.0)

Status: code verified, 33 files readable, 1 match

Tuesday, 24 September 2024 (28 papers)

[24261] doi:10.1002/cm.21922 [paper, data]

Distinct molecular features of FLNC mutations, associated with different clinical phenotypes.

Journal: Cytoskeleton (Hoboken, N.J.)

Status: data only, 1 dataset cited

[24262] doi:10.1007/s00701-024-06269-7 [paper]

Contusion expansion, low platelet count and bifrontal contusions are associated with worse patient outcome following traumatic brain injury-a retrospective single-center study.

Journal: Acta neurochirurgica

Status: code on request

[24263] doi:10.1016/j.dcn.2024.101455 [paper, repository]

Brain structures with stronger genetic associations are not less associated with family- and state-level economic contexts.

Journal: Developmental cognitive neuroscience

Authors' code: OSF mg63h (no license)

Status: code verified, 8 files readable

[24264] doi:10.1016/j.heliyon.2024.e38276 [paper, repository]

A combined neural ODE-Bayesian optimization approach to resolve dynamics and estimate parameters for a modified SIR model with immune memory.

Journal: Heliyon

Authors' code: lindliu/IDE (no license)

Status: code verified, 26 files readable, 2 matches

[24265] doi:10.1016/j.ibneur.2024.09.003 [paper, data]

Psychiatric disorders from EEG signals through deep learning models.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[24266] doi:10.1016/j.isci.2024.111020 [paper, repository]

Evolutionary neural architecture search for automated MDD diagnosis using multimodal MRI imaging.

Journal: iScience

Authors' code: TTLi1996/M-ENAS (no license)

Status: code verified, 10 files readable, 3 matches

[24267] doi:10.1016/j.neuron.2024.08.022 [paper, repository]

Offline hippocampal reactivation during dentate spikes supports flexible memory.

Journal: Neuron

Authors' code: Zenodo 10034432 (CC-BY-4.0), mcastelli98/dentatespikeclassifier (no license), Zenodo 14849859 (CC-BY-4.0)

Status: code verified, 21 files readable, 2 matches

[24268] doi:10.1038/s41592-024-02417-0 [paper, repository]

Neural space-time model for dynamic multi-shot imaging.

Journal: Nature methods

Authors' code: rmcao/nstm (BSD-3-Clause)

Status: code verified, 25 files readable, 2 matches

[24269] doi:10.1073/pnas.2405929121 [paper, repository]

Repetition dynamically and rapidly increases cortical, but not hippocampal, offline reactivation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF vwdu3 (no license)

Status: code verified, 2 files readable, 1 match

[24270] doi:10.1073/pnas.2410404121 [paper, repository]

Innate face-selectivity in the brain of young domestic chicks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10517792 (CC-BY-4.0), Zenodo 10517793 (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[24271] doi:10.1080/07853890.2024.2407067 [paper, repository]

Optimizing anesthesia management based on early identification of electroencephalogram burst suppression risk in non-cardiac surgery patients: a visualized dynamic nomogram.

Journal: Annals of medicine

Authors' code: eegbsnomogram.shinyapps.io/dynnomapp (no license)

Status: code found, still to be checked

[24272] doi:10.1080/15548627.2024.2358736 [paper, data]

Poly-GP accumulation due to C9orf72 loss of function induces motor neuron apoptosis through autophagy and mitophagy defects.

Journal: Autophagy

Status: data only, 1 dataset cited

[24273] doi:10.1084/jem.20240386 [paper, data]

Transport of β-amyloid from brain to eye causes retinal degeneration in Alzheimer's disease.

Journal: The Journal of experimental medicine

Status: data only, 1 dataset cited

[24274] doi:10.1093/narmme/ugae012 [paper, repository]

MONFIT: multi-omics factorization-based integration of time-series data sheds light on Parkinson's disease.

Journal: NAR molecular medicine

Authors' code: Zenodo 11396807 (CC-BY-4.0), katarinamihajlovic/monfit (no license)

Status: code verified, 82 files readable, 12 matches

[24275] doi:10.1093/nop/npae082 [paper]

Actionable alterations in glioblastoma: Insights from the implementation of genomic profiling as the standard of care from 2016 to 2023.

Journal: Neuro-oncology practice

Status: code on request

[24276] doi:10.1098/rsos.240331 [paper, repository]

Synchrony within, synchrony without: establishing the link between interpersonal behavioural and brain-to-brain synchrony during role-play.

Journal: Royal Society open science

Authors' code: OSF 5xw3t (no license)

Status: code verified, 29 files readable, 1 match

[24277] doi:10.1117/1.jbo.29.9.093509 [paper, repository]

Learnable real-time inference of molecular composition from diffuse spectroscopy of brain tissue.

Journal: Journal of biomedical optics

Authors' code: HyperProbe/SpectraFit (no license), multimodalspectroscopy/UCL-NIR-spectra (no license)

Status: code verified, 25 files readable, 4 matches

[24278] doi:10.1128/spectrum.01178-24 [paper, data]

Gut microbiota dysbiosis and neurological function recovery after intracerebral hemorrhage: an analysis of clinical samples.

Journal: Microbiology spectrum

Status: data only, 1 dataset cited

[24279] doi:10.1159/000541217 [paper, data]

No Short-Term Effect of Low-Dose Nicotine on Inflammation after Global Hypoxia in Newborn Piglets.

Journal: Neonatology

Status: data only, 1 dataset cited

[24280] doi:10.1172/jci181095 [paper, repository]

Stimulation of an entorhinal-hippocampal extinction circuit facilitates fear extinction in a post-traumatic stress disorder model.

Journal: The Journal of clinical investigation

Authors' code: Zenodo 13268936 (CC-BY-4.0)

Status: code verified, 359 files readable

[24281] doi:10.1371/journal.pbio.3002808 [paper, repository]

Human brain state dynamics are highly reproducible and associated with neural and behavioral features.

Journal: PLoS biology

Authors' code: Zenodo 13251562 (CC-BY-4.0)

Status: code verified, 42 files readable, 10 matches

[24282] doi:10.1523/eneuro.0003-24.2024 [paper]

MeCP2 Deficiency Alters the Response Selectivity of Prefrontal Cortical Neurons to Different Social Stimuli.

Journal: eNeuro

Status: code on request

[24283] doi:10.3389/fnhum.2024.1461590 [paper, repository]

FunMaps: a method for parcellating functional brain networks using resting-state functional MRI data.

Journal: Frontiers in human neuroscience

Authors' code: persichetti-lab/FunMaps (no license)

Status: code verified, 8 files readable, 5 matches

[24284] doi:10.3390/brainsci14100956 [paper, data]

Dissociable Effects of Endogenous and Exogenous Attention on Crowding: Evidence from Event-Related Potentials.

Journal: Brain sciences

Status: data only, 1 dataset cited

[24285] doi:10.3390/ijms251910236 [paper, repository]

Pinpointing Novel Plasma and Brain Proteins for Common Ocular Diseases: A Comprehensive Cross-Omics Integration Analysis.

Journal: International journal of molecular sciences

Authors' code: YuLab-SMU/clusterProfiler (no license), MRCIEU/TwoSampleMR (other)

Status: code verified, 164 files readable, 5 matches

[24286] doi:10.3390/ijms251910288 [paper, data]

Eucalyptus Wood Smoke Extract Elicits a Dose-Dependent Effect in Brain Endothelial Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[24287] doi:10.4103/nrr.nrr-d-24-00532 [paper, repository]

A novel method for clustering cellular data to improve classification.

Journal: Neural regeneration research

Authors' code: Projectomics/MATLAB (no license)

Status: code verified, 147 files readable, 18 matches

[24288] doi:10.7554/elife.89131 [paper, repository]

When and why does motor preparation arise in recurrent neural network models of motor control?

Journal: eLife

Authors' code: tachukao/dilqr (no license), marineschimel/why-prep-2 (MIT)

Status: empty repository, 3 files readable

Monday, 23 September 2024 (28 papers)

[24289] doi:10.1002/alz.14222 [paper, data]

Loss of TREM2 diminishes CAA despite an overall increase of amyloid load in Tg-SwDI mice.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[24290] doi:10.1002/glia.24618 [paper, repository]

Aberrant neurodevelopment in human iPS cell-derived models of Alexander disease.

Journal: Glia

Authors' code: LabGenExp/hiPSC-derived_AxD_models (no license)

Status: code verified, 16 files readable, 24 matches

[24291] doi:10.1016/j.crmeth.2024.100863 [paper, repository]

Adult zebrafish can learn Morris water maze-like tasks in a two-dimensional virtual reality system.

Journal: Cell reports methods

Authors' code: Zenodo 10703218 (CC-BY-4.0)

Status: code verified

[24292] doi:10.1016/j.dcn.2024.101443 [paper, data]

Psychiatric neuroimaging at a crossroads: Insights from psychiatric genetics.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[24293] doi:10.1016/j.neuroimage.2024.120863 [paper, repository]

Dynamic functional connectivity in verbal cognitive control and word reading.

Journal: NeuroImage

Authors' code: kaz1126/Stroop (no license)

Status: code verified, 1 file readable

[24294] doi:10.1016/j.xpro.2024.103311 [paper, repository]

Protocol to detect spatio-molecular profiles underlying neuroimaging features in the human cerebellum.

Journal: STAR protocols

Authors' code: cerebellamap/Gene2Cere (no license), netneurolab/abagen (BSD-3-Clause), Zenodo 5129257 (BSD-3-Clause), murraylab/brainsmash (GPL-3.0), cerebellamap/STARProtocols (no license), rmarkello/abagen (BSD-3-Clause)

Status: code verified, 295 files readable, 12 matches

[24295] doi:10.1016/j.ynirp.2024.100218 [paper, repository]

Quantitative 3D reconstruction of viral vector distribution in rodent and ovine brain following local delivery.

Journal: Neuroimage. Reports

Authors' code: bionautlabs/quantitative_3d_reconstruction (no license)

Status: code verified, 2 files readable, 12 matches

[24296] doi:10.1038/s41591-024-03309-8 [paper, repository]

Posthospitalization COVID-19 cognitive deficits at 1 year are global and associated with elevated brain injury markers and gray matter volume reduction.

Journal: Nature medicine

Authors' code: tnggroup/covidcns (no license), OSF fgyhb (no license)

Status: code verified, 96 files readable, 15 matches

[24297] doi:10.1073/pnas.2405117121 [paper, repository]

Septo-dentate gyrus cholinergic circuits modulate function and morphogenesis of adult neural stem cells through granule cell intermediaries.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: zekachen/Chen_Quintanilla_cholinergic_neurogenesis2024 (no license)

Status: code verified, 11 files readable, 1 match

[24298] doi:10.1073/pnas.2405615121 [paper, data]

Cell-type-specific enhancement of deviance detection by synaptic zinc in the mouse auditory cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24299] doi:10.1093/braincomms/fcae323 [paper, repository]

Rehabilitating homonymous visual field deficits: white matter markers of recovery-stage 2 registered report.

Journal: Brain communications

Authors' code: hanna-willis/rehab_diffusion (no license)

Status: code verified, 12 files readable, 6 matches

[24300] doi:10.1162/imag_a_00290 [paper, repository]

Transformer-aided dynamic causal model for scalable estimation of effective connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sn401/trend_repo (no license)

Status: dead link

[24301] doi:10.1162/imag_a_00298 [paper, repository]

Breath-hold calibrated fMRI mapping of absolute cerebral metabolic rate of oxygen metabolism (CMRO <sub>2</sub> ): An assessment of the accuracy and repeatability in a healthy adult population.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: git.cardiff.ac.uk/cubric/wand (no license), Zenodo 10695877 (CC-BY-4.0), inoma001/bhc_fmri_least_squares (no license)

Status: code verified, 4 files readable, 6 matches

[24302] doi:10.1242/dmm.050914 [paper, data]

Sex-specific trisomic Dyrk1a-related skeletal phenotypes during development in a Down syndrome model.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[24303] doi:10.12688/f1000research.142054.2 [paper, repository]

Effect of ethanol extract of nigella sativa L seeds and propofol on BDNF protein level as neuroplasticity and neuroprotection of traumatic brain injury in rats.

Journal: F1000Research

Authors' code: Zenodo 10276505 (CC-BY-4.0)

Status: empty repository

[24304] doi:10.1364/boe.530976 [paper, repository]

Microscope integrated MHz optical coherence tomography system for neurosurgery: development and clinical in-vivo imaging.

Journal: Biomedical optics express

Authors' code: codeocean:2671539 (no license)

Status: code found, still to be checked

[24305] doi:10.1371/journal.pcbi.1012428 [paper, data]

Distribution of calbindin-positive neurons across areas and layers of the marmoset cerebral cortex.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[24306] doi:10.1371/journal.pcbi.1012447 [paper, repository]

The neural dynamics associated with computational complexity.

Journal: PLoS computational biology

Authors' code: OSF g4h7y (no license)

Status: code verified, 1 file readable

[24307] doi:10.1523/eneuro.0145-24.2024 [paper, data]

Comprehensive Characterization of a Subfamily of Ca<sup>2+</sup>-Binding Proteins in Mouse and Human Retinal Neurons at Single-Cell Resolution.

Journal: eNeuro

Status: data only, 1 dataset cited

[24308] doi:10.1523/eneuro.0306-24.2024 [paper, repository]

Whole Nervous System Expression of Glutamate Receptors Reveals Distinct Receptor Roles in Sensorimotor Circuits.

Journal: eNeuro

Authors' code: CionaLab/agr (GPL-3.0), Zenodo 12705827 (GPL-3.0)

Status: code verified, 6 files readable

[24309] doi:10.3389/fncir.2024.1399571 [paper, repository]

Comparison of orientation encoding across layers within single columns of primate V1 revealed by high-density recordings.

Journal: Frontiers in neural circuits

Authors' code: cortex-lab/phy (BSD-3-Clause)

Status: code verified, 165 files readable

[24310] doi:10.3389/fncom.2024.1439632 [paper, repository]

Analyzing top-down visual attention in the context of gamma oscillations: a layer- dependent network-of- networks approach.

Journal: Frontiers in computational neuroscience

Authors' code: Shawnzty/multicolumn (MIT)

Status: code verified, 124 files readable, 2 matches

[24311] doi:10.3389/fnins.2024.1427947 [paper, repository]

Peak width of skeletonized mean diffusivity as a neuroimaging biomarker in first-episode schizophrenia.

Journal: Frontiers in neuroscience

Authors' code: psmd-marker.com (no license)

Status: code verified

[24312] doi:10.3389/frdem.2024.1456716 [paper, data]

Interactions between muscle volume and body mass index on brain structure in the UK Biobank.

Journal: Frontiers in dementia

Status: data only, 1 dataset cited

[24313] doi:10.3390/ijms251810219 [paper, data]

Discovery and Prediction Study of the Dominant Pharmacological Action Organ of <i>Aconitum carmichaeli</i> Debeaux Using Multiple Bioinformatic Analyses.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[24314] doi:10.3758/s13415-024-01221-9 [paper, repository]

The effect of inter-letter spacing on the N170 during visual word recognition: An event-related potentials experiment.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF d87xf (no license)

Status: code verified, 1 file readable

[24315] doi:10.7150/thno.97165 [paper, data]

Single-cell profiling of brain pericyte heterogeneity following ischemic stroke unveils distinct pericyte subtype-targeted neural reprogramming potential and its underlying mechanisms.

Journal: Theranostics

Status: data only, 1 dataset cited

[24316] doi:10.7554/elife.98345 [paper, repository]

The subthalamic nucleus contributes causally to perceptual decision-making in monkeys.

Journal: eLife

Authors' code: OSF z3596 (no license)

Status: code verified, 44 files readable, 10 matches

Sunday, 22 September 2024 (3 papers)

[24317] doi:10.1080/15592294.2024.2393945 [paper, data]

Implementation of the Methyl-Seq platform to identify tissue- and sex-specific DNA methylation differences in the rat epigenome.

Journal: Epigenetics

Status: data only, 1 dataset cited

[24318] doi:10.3390/pharmaceutics16091234 [paper, data]

Glioblastoma Multiforme: Sensitivity to Antimicrobial Peptides LL-37 and PG-1, and Their Combination with Chemotherapy for Predicting the Overall Survival of Patients.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

[24319] doi:10.3390/s24186125 [paper, data]

Optimizing Real-Time MI-BCI Performance in Post-Stroke Patients: Impact of Time Window Duration on Classification Accuracy and Responsiveness.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 21 September 2024 (5 papers)

[24320] doi:10.1002/cm.21933 [paper, repository]

F-actin in the cuticular plate and junctions of auditory hair cells is regulated by ADF and cofilin to allow for normal stereocilia bundle patterning and maintenance.

Journal: Cytoskeleton (Hoboken, N.J.)

Authors' code: mcgrathjk/McGrath2022_CP_analysis (GPL-3.0)

Status: code verified, 3 files readable

[24321] doi:10.1016/j.ctro.2024.100863 [paper, data]

Immunological responses to brain metastasis stereotactic radiosurgery in patient-matched longitudinal blood and tumour samples.

Journal: Clinical and translational radiation oncology

Status: data only, 1 dataset cited

[24322] doi:10.1093/braincomms/fcae324 [paper, repository]

Rehabilitating homonymous visual field deficits: white matter markers of recovery-stage 1 registered report.

Journal: Brain communications

Authors' code: brain-life/app-freesurfer (no license), brainlife/app-mrtrix3-5tt (no license), faskowit/app-multiAtlasTT (MIT), brain-life/app-mrtrix3-preproc (no license), davhunt/app-snr_in_cc (no license), brain-life/app-noddi-amico (no license), bacaron/app-mergeTCK (no license), brainlife/app-trekker-roi-tracking (MIT), brainlife/app-removeTractOutliers (MIT), brain-life/app-tractanalysisprofiles (MIT)

Status: code verified, 59 files readable

[24323] doi:10.3390/s24186103 [paper]

Implications of Aperiodic and Periodic EEG Components in Classification of Major Depressive Disorder from Source and Electrode Perspectives.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[24324] doi:10.3390/s24186110 [paper, data]

Enhancing EEG-Based MI-BCIs with Class-Specific and Subject-Specific Features Detected by Neural Manifold Analysis.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 20 September 2024 (27 papers)

[24325] doi:10.1016/j.isci.2024.110995 [paper, repository]

Neural mechanisms of adaptive behavior: Dissociating local cortical modulations and interregional communication patterns.

Journal: iScience

Authors' code: OSF 6vn3f (no license)

Status: code found, still to be checked

[24326] doi:10.1016/j.isci.2024.110997 [paper, repository]

Chemogenetic silencing reveals presynaptic G_i/o protein-mediated inhibition of developing hippocampal synchrony <i>in vivo</i>.

Journal: iScience

Authors' code: Zenodo 13767663 (CC-BY-4.0), kirmselab/publ_graf_samiee_2024 (GPL-3.0)

Status: code verified, 68 files readable, 10 matches

[24327] doi:10.1016/j.isci.2024.111008 [paper]

Photoswitchable TRPC6 channel activators evoke distinct channel kinetics reflecting different gating behaviors.

Journal: iScience

Status: code on request

[24328] doi:10.1016/j.jbc.2024.107798 [paper, data]

Structural mechanism of human HCN1 hyperpolarization-activated channel inhibition by ivabradine.

Journal: The Journal of biological chemistry

Status: data only, 2 datasets cited

[24329] doi:10.1016/j.jtbi.2024.111951 [paper, repository]

Optimal control of combination immunotherapy for a virtual murine cohort in a glioblastoma-immune dynamics model.

Journal: Journal of theoretical biology

Authors' code: stepien-lab/glioma-Tcell-MDSC-treatment (MIT)

Status: code verified, 16 files readable, 10 matches

[24330] doi:10.1038/s41398-024-03091-8 [paper]

Neural correlates of harm avoidance: a multimodal meta-analysis of brain structural and resting-state functional neuroimaging studies.

Journal: Translational psychiatry

Status: code on request

[24331] doi:10.1038/s41467-024-52298-2 [paper, data]

CYP1B1-RMDN2 Alzheimer's disease endophenotype locus identified for cerebral tau PET.

Journal: Nature communications

Status: data only, 2 datasets cited

[24332] doi:10.1038/s41591-024-03224-y [paper, repository]

High-throughput identification of repurposable neuroactive drugs with potent anti-glioblastoma activity.

Journal: Nature medicine

Authors' code: RebekkaWegmann/drugseq_toolbox (MIT), snijderlab.org/resources/costar (no license)

Status: code verified, 10 files readable

[24333] doi:10.1038/s41592-024-02411-6 [paper, repository]

A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging.

Journal: Nature methods

Authors' code: YaoChenLabWashU/2pFLIM_acquisition (no license)

Status: code verified, 1,046 files readable

[24334] doi:10.1038/s41598-024-73051-1 [paper]

A covalent creatine kinase inhibitor ablates glioblastoma migration and sensitizes tumors to oxidative stress.

Journal: Scientific reports

Status: data only

[24335] doi:10.1038/s44321-024-00144-9 [paper, data]

Neural precursor cells rescue symptoms of Rett syndrome by activation of the Interferon γ pathway.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[24336] doi:10.1093/braincomms/fcae316 [paper, repository]

Volume-based structural connectome of epilepsy partialis continua in Rasmussen's encephalitis.

Journal: Brain communications

Authors' code: zhema620/iRSSN (no license)

Status: code verified, 1 file readable

[24337] doi:10.1101/gr.278601.123 [paper, repository]

Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs.

Journal: Genome research

Authors' code: aanderson54/BrainTF_ASB (MIT)

Status: code verified, 11 files readable, 6 matches

[24338] doi:10.1117/1.jmi.11.5.054502 [paper, repository]

HarmonyTM: multi-center data harmonization applied to distributed learning for Parkinson's disease classification.

Journal: Journal of medical imaging (Bellingham, Wash.)

Authors' code: RaissaSouza/scanner-harmonization (GPL-3.0)

Status: code verified, 16 files readable, 4 matches

[24339] doi:10.1186/s12916-024-03634-2 [paper, data]

YTHDF1 in periaqueductal gray inhibitory neurons contributes to morphine withdrawal responses in mice.

Journal: BMC medicine

Status: data only, 1 dataset cited

[24340] doi:10.1186/s12974-024-03198-1 [paper, repository]

Repeated LPS induces training and tolerance of microglial responses across brain regions.

Journal: Journal of neuroinflammation

Authors' code: ciernialab/Kim2024_1-4xLPS (MIT), OSF gb7a9 (no license)

Status: code verified, 20 files readable, 22 matches

[24341] doi:10.1186/s13041-024-01143-0 [paper, data]

Circadian cilia transcriptome in mouse brain across physiological and pathological states.

Journal: Molecular brain

Status: data only, 4 datasets cited

[24342] doi:10.1371/journal.pone.0296424 [paper, data]

Water extract of ginseng alleviates parkinsonism in MPTP-induced Parkinson's disease mice.

Journal: PloS one

Status: data only, 1 dataset cited

[24343] doi:10.1523/eneuro.0365-24.2024 [paper, repository]

A Subcortical Model for Auditory Forward Masking with Efferent Control of Cochlear Gain.

Journal: eNeuro

Authors' code: OSF ey4ht (no license)

Status: code verified, 16 files readable, 4 matches

[24344] doi:10.17816/cp15488 [paper, repository]

Mass Spectrometry Imaging of Two Neocortical Areas Reveals the Histological Selectivity of Schizophrenia-Associated Lipid Alterations.

Journal: Consortium psychiatricum

Authors' code: kuwisdelu/cardinal (Artistic-2.0)

Status: code verified, 61 files readable, 3 matches

[24345] doi:10.3389/fmed.2024.1445325 [paper, data]

Enhancing healthcare recommendation: transfer learning in deep convolutional neural networks for Alzheimer disease detection.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[24346] doi:10.3389/fncom.2024.1360095 [paper, repository]

Deep learning-based Alzheimer's disease detection: reproducibility and the effect of modeling choices.

Journal: Frontiers in computational neuroscience

Authors' code: rturrisige/AD_classification (no license)

Status: code verified, 7 files readable, 1 match

[24347] doi:10.3389/fnetp.2024.1441998 [paper, data]

Connectivity of high-frequency bursts as SOZ localization biomarker.

Journal: Frontiers in network physiology

Status: data only, 4 datasets cited

[24348] doi:10.3389/fonc.2024.1437185 [paper, data]

Enhancing brain tumor detection: a novel CNN approach with advanced activation functions for accurate medical imaging analysis.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[24349] doi:10.3390/biomedicines12092139 [paper, repository]

Analysis of Brain Age Gap across Subject Cohorts and Prediction Model Architectures.

Journal: Biomedicines

Authors' code: AralRalud/BASE (no license), shengfly/brainagingnet (GPL-3.0), ha-ha-ha-han/UKBiobank_deep_pretrain (MIT)

Status: code verified, 14 files readable

[24350] doi:10.3390/jimaging10090235 [paper, data]

Convolutional Neural Network-Machine Learning Model: Hybrid Model for Meningioma Tumour and Healthy Brain Classification.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[24351] doi:10.3758/s13415-024-01219-3 [paper]

Distributed associations among white matter hyperintensities and structural brain networks with fluid cognition in healthy aging.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

Thursday, 19 September 2024 (30 papers)

[24352] doi:10.1016/j.heliyon.2024.e38115 [paper, data]

Unearthing the hidden links: Investigating the functional connectivity between amygdala subregions and brain networks in bipolar disorder through resting-state fMRI.

Journal: Heliyon

Status: data only, 1 dataset cited

[24353] doi:10.1016/j.isci.2024.110532 [paper, repository]

Is political ideology correlated with brain structure? A preregistered replication.

Journal: iScience

Authors' code: OSF k7nt5 (no license)

Status: code verified, 10 files readable, 2 matches

[24354] doi:10.1016/j.stemcr.2024.08.005 [paper]

Rod-shaped micropatterning enhances the electrophysiological maturation of cardiomyocytes derived from human induced pluripotent stem cells.

Journal: Stem cell reports

Status: code on request

[24355] doi:10.1016/j.stemcr.2024.08.006 [paper, repository]

Dynamic spatiotemporal activation of a pervasive neurogenic competence in striatal astrocytes supports continuous neurogenesis following injury.

Journal: Stem cell reports

Authors' code: bunbunet/FogliNato2024_3Drec (no license)

Status: code verified, 10 files readable

[24356] doi:10.1016/j.stemcr.2024.08.007 [paper, data]

Astrocytes originated from neural stem cells drive the regenerative remodeling of pathologic CSPGs in spinal cord injury.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[24357] doi:10.1016/j.xpro.2024.103322 [paper]

Protocol for the longitudinal study of neuroinflammation and reactive astrocytes in Lcn2CreERT2 mice.

Journal: STAR protocols

Status: code on request

[24358] doi:10.1038/s41398-024-03085-6 [paper]

Disrupted basolateral amygdala circuits supports negative valence bias in depressive states.

Journal: Translational psychiatry

Status: code on request

[24359] doi:10.1038/s41467-024-52240-6 [paper, repository]

A geometrical solution underlies general neural principle for serial ordering.

Journal: Nature communications

Authors' code: gdianto/GeometricMentalLine (CC-BY-SA-4.0)

Status: code verified, 35 files readable, 3 matches

[24360] doi:10.1038/s41467-024-52466-4 [paper, repository]

Distinct ventral hippocampal inhibitory microcircuits regulating anxiety and fear behaviors.

Journal: Nature communications

Authors' code: figshare 26575084 (CC-BY-4.0)

Status: code verified, 1 file readable

[24361] doi:10.1038/s41467-024-52541-w [paper, repository]

Maintenance and transformation of representational formats during working memory prioritization.

Journal: Nature communications

Authors' code: cjspoerer/rcnn-sat (MIT), dpachec/WM (no license)

Status: code verified, 113 files readable, 8 matches

[24362] doi:10.1038/s41597-024-03838-4 [paper, repository]

EAV: EEG-Audio-Video Dataset for Emotion Recognition in Conversational Contexts.

Journal: Scientific data

Authors' code: serengil/deepface (MIT), vandana-rajan/1D-Speech-Emotion-Recognition (no license), nubcico/EAV (GPL-3.0)

Status: code verified, 226 files readable, 6 matches

[24363] doi:10.1038/s42003-024-06836-9 [paper, repository]

A shared spatial topography links the functional connectome correlates of cocaine use disorder and dopamine D&lt;sub&gt;2/3&lt;/sub&gt; receptor densities.

Journal: Communications biology

Authors' code: ricardjocelyn/cocaine-use-disorder-receptor-density (no license)

Status: code verified, 5 files readable, 1 match

[24364] doi:10.1038/s42003-024-06852-9 [paper, repository]

Whole brain modelling for simulating pharmacological interventions on patients with disorders of consciousness.

Journal: Communications biology

Authors' code: figshare 26728804 (CC-BY-4.0), Zenodo 13330349 (CC-BY-4.0), picardian14/pharmacological-perturbations (CC0-1.0)

Status: code verified, 58 files readable, 5 matches

[24365] doi:10.1038/s44318-024-00218-x [paper, repository]

Astrocyte allocation during brain development is controlled by Tcf4-mediated fate restriction.

Journal: The EMBO journal

Authors' code: macs3-project/macs (BSD-3-Clause)

Status: code verified, 214 files readable

[24366] doi:10.1038/s44321-024-00140-z [paper]

Liver protects neuron viability and electrocortical activity in post-cardiac arrest brain injury.

Journal: EMBO molecular medicine

Status: data only

[24367] doi:10.1080/15548627.2024.2395727 [paper, data]

MLKL-USP7-UBA52 signaling is indispensable for autophagy in brain through maintaining ubiquitin homeostasis.

Journal: Autophagy

Status: code on request, 1 dataset cited

[24368] doi:10.1093/braincomms/fcae321 [paper, repository]

Age-related differences in human cortical microstructure depend on the distance to the nearest vein.

Journal: Brain communications

Authors' code: hmattern/omelette (BSD-3-Clause)

Status: code verified, 12 files readable, 2 matches

[24369] doi:10.1093/braincomms/fcae326 [paper, repository]

A novel tauopathy model mimicking molecular and spatial aspects of human tau pathology.

Journal: Brain communications

Authors' code: OrganismalSystemsBiology/Tau-analysis (no license)

Status: code verified, 3 files readable, 7 matches

[24370] doi:10.1093/pnasnexus/pgae415 [paper, repository]

Dimensionality reduction of neuronal degeneracy reveals two interfering physiological mechanisms.

Journal: PNAS nexus

Authors' code: arthur-fyon/CORR_2024 (no license), Zenodo 10842029 (CC-BY-4.0)

Status: code verified, 36 files readable, 5 matches

[24371] doi:10.1162/imag_a_00291 [paper, repository]

Investigating the genetic relationship of intracranial and subcortical brain volumes with depression and other psychiatric disorders.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[24372] doi:10.1162/imag_a_00292 [paper, repository]

Fast frequency modulation is encoded according to the listener expectations in the human subcortical auditory pathway.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF f5tsy (no license)

Status: code verified, 13 files readable, 2 matches

[24373] doi:10.1186/s40659-024-00549-3 [paper, data]

Comparative study of the growth, stress status and reproductive capabilities of four wild-type zebrafish (Danio rerio) lines.

Journal: Biological research

Status: data only, 1 dataset cited

[24374] doi:10.12688/f1000research.143642.5 [paper, data]

Metabolomic characterization of human glioblastomas and patient plasma: a pilot study.

Journal: F1000Research

Status: data only, 1 dataset cited

[24375] doi:10.3389/fgene.2024.1451024 [paper, repository]

A proteogenomic atlas of the human neural retina.

Journal: Frontiers in genetics

Authors' code: cmbi/Neural-Retina-Atlas (GPL-3.0)

Status: code verified, 75 files readable, 17 matches

[24376] doi:10.3389/fneur.2024.1426841 [paper, data]

QSM-detected iron accumulation in the cerebellar gray matter is selectively associated with executive dysfunction in non-demented ALS patients.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[24377] doi:10.3389/fnins.2024.1383041 [paper, repository]

Neuroplasticity of the white matter tracts underlying recovery of diarrhea-predominant irritable bowel syndrome following acupuncture treatment.

Journal: Frontiers in neuroscience

Authors' code: jyeatman/AFQ (gnu), vistalab/vistasoft (no license)

Status: code verified, 2,165 files readable, 9 matches

[24378] doi:10.3389/fnins.2024.1439414 [paper, repository]

Spiking representation learning for associative memories.

Journal: Frontiers in neuroscience

Authors' code: nbrav/BCPNNSim-Frontiers2024 (MIT)

Status: code verified, 81 files readable, 10 matches

[24379] doi:10.3390/s24186056 [paper, repository]

Electroencephalography Neurofeedback Training with Focus on the State of Attention: An Investigation Using Source Localization and Effective Connectivity.

Journal: Sensors (Basel, Switzerland)

Authors' code: Wagnerdcasag/Neurofeedback-seriousgame-attentionalstate (no license)

Status: code verified, 7 files readable

[24380] doi:10.7554/elife.94306 [paper, repository]

Mechanism of barotaxis in marine zooplankton.

Journal: eLife

Authors' code: Zenodo 11103057 (CC-BY-4.0)

Status: code verified

[24381] doi:10.7554/elife.97673 [paper, data]

Laminar specificity and coverage of viral-mediated gene expression restricted to GABAergic interneurons and their parvalbumin subclass in marmoset primary visual cortex.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 18 September 2024 (38 papers, 35 on this page)

[24382] doi:10.1002/advs.202407132 [paper, data]

TRIM56 Modulates YBX1 Degradation to Ameliorate ZBP1-Mediated Neuronal PANoptosis in Spinal Cord Injury.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[24383] doi:10.1002/jgh3.70027 [paper, data]

Volumetric changes of the enteric nervous system under physiological and pathological conditions measured using x-ray phase-contrast tomography.

Journal: JGH open : an open access journal of gastroenterology and hepatology

Status: data only, 1 dataset cited

[24384] doi:10.1007/s00429-024-02846-9 [paper, repository]

Unveiling the neuroplastic capacity of the bilingual brain: insights from healthy and pathological individuals.

Journal: Brain structure & function

Authors' code: git.bcbl.eu/sgisbert/multimap2 (no license), Polina418/Audio_processing (MIT)

Status: code verified, 3 files readable

[24385] doi:10.1016/j.celrep.2024.114747 [paper]

Regulation of synapse density by Pumilio RNA-binding proteins.

Journal: Cell reports

Status: code on request

[24386] doi:10.1016/j.dcn.2024.101447 [paper, data]

The development and structure of the HEALthy Brain and Child Development (HBCD) Study EEG protocol.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[24387] doi:10.1016/j.xpro.2024.103312 [paper, repository]

Protocol for semiautomated analysis of sensory neuronal innervation of the mouse footpad skin.

Journal: STAR protocols

Authors' code: supp:PMC11426118/mmc1.zip (no license)

Status: empty repository

[24388] doi:10.1038/s41467-024-52407-1 [paper, repository]

Complex trait associations in rare diseases and impacts on Mendelian variant interpretation.

Journal: Nature communications

Authors' code: csmail/ga4k_pgs (no license), Zenodo 13307331 (CC-BY-4.0)

Status: code verified, 20 files readable

[24389] doi:10.1038/s41467-024-52429-9 [paper, repository]

Claustrum and dorsal endopiriform cortex complex cell-identity is determined by Nurr1 and regulates hallucinogenic-like states in mice.

Journal: Nature communications

Authors' code: giacomellolab/CLA-Nurr1 (MIT), Zenodo 13221149 (CC-BY-4.0)

Status: code verified, 14 files readable, 1 match

[24390] doi:10.1038/s41467-024-52478-0 [paper, data]

Structural basis of CDNF interaction with the UPR regulator GRP78.

Journal: Nature communications

Status: data only, 2 datasets cited

[24391] doi:10.1038/s41467-024-52490-4 [paper, repository]

Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements.

Journal: Nature communications

Authors' code: shendurelab/multiplex_scCRISPRa_screening (no license), krishna.gs.washington.edu/content/members (no license)

Status: code verified, 39 files readable, 22 matches

[24392] doi:10.1038/s41586-024-07922-y [paper, repository]

Pathogenic hypothalamic extracellular matrix promotes metabolic disease.

Journal: Nature

Authors' code: mmpc.org/shared/regression.aspx (no license)

Status: code verified

[24393] doi:10.1038/s41592-024-02412-5 [paper, repository]

A polarized FGF8 source specifies frontotemporal signatures in spatially oriented cell populations of cortical assembloids.

Journal: Nature methods

Authors' code: linnarsson-lab/developing-human-brain (BSD-2-Clause), GiuseppeTestaLab/polCAs (LGPL-3.0)

Status: code verified, 8 files readable, 3 matches

[24394] doi:10.1038/s41593-024-01753-w [paper, repository]

Inhibiting Ca²⁺ channels in Alzheimer's disease model mice relaxes pericytes, improves cerebral blood flow and reduces immune cell stalling and hypoxia.

Journal: Nature neuroscience

Authors' code: AttwellLab/Microglia (MIT), AttwellLab/Diameter (MIT)

Status: code verified, 10 files readable

[24395] doi:10.1038/s41593-024-01763-8 [paper, repository]

Synergistic association of Aβ and tau pathology with cortical neurophysiology and cognitive decline in asymptomatic older adults.

Journal: Nature neuroscience

Authors' code: villeneuvelab/vlpp (MIT), jogaru1818/AD_proteinopathy_neurophysiology (no license)

Status: code verified, 44 files readable, 12 matches

[24396] doi:10.1038/s41597-024-03857-1 [paper, data]

A comprehensive dataset of pattern electroretinograms for ocular electrophysiology research.

Journal: Scientific data

Status: data only, 2 datasets cited

[24397] doi:10.1038/s41598-024-67769-1 [paper, data]

Targeted proteomics of cerebrospinal fluid in treatment naïve multiple sclerosis patients identifies immune biomarkers of clinical phenotypes.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24398] doi:10.1038/s41598-024-71931-0 [paper, repository]

Linking cognitive strategy, neural mechanism, and movement statistics in group foraging behaviors.

Journal: Scientific reports

Authors' code: BasisResearch/collab-creatures (no license)

Status: code verified, 57 files readable, 4 matches

[24399] doi:10.1038/s42003-024-06684-7 [paper, repository]

Transcriptional profiling in microglia across physiological and pathological states identifies a transcriptional module associated with neurodegeneration.

Journal: Communications biology

Authors' code: aguvenek/human-microglia (MIT), Zenodo 12699948 (CC-BY-4.0)

Status: code verified, 12 files readable, 2 matches

[24400] doi:10.1038/s42003-024-06829-8 [paper, repository]

Fingerprints of brain disease: connectome identifiability in Alzheimer's disease.

Journal: Communications biology

Authors' code: ss1913/fingerprints_alzheimer (no license)

Status: code verified, 19 files readable, 12 matches

[24401] doi:10.1073/pnas.2407083121 [paper, repository]

Actomyosin contraction in the follicular epithelium provides the major mechanical force for follicle rupture during &lt;i&gt;Drosophila&lt;/i&gt; ovulation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: kazunorihoshino/Drosophila-Image-Analyis (no license)

Status: code verified, 1 file readable

[24402] doi:10.1093/pnasnexus/pgae412 [paper, repository]

Socioeconomic resources in youth are linked to divergent patterns of network integration/segregation across the brain's transmodal axis.

Journal: PNAS nexus

Authors' code: SripadaLab/ABCD_Resting_SER_GraphTheory (no license)

Status: code verified, 7 files readable, 3 matches

[24403] doi:10.1098/rsos.240951 [paper, data]

How domestication, feralization and experience-dependent plasticity affect brain size variation in &lt;i&gt;Sus scrofa&lt;/i&gt;.

Journal: Royal Society open science

Status: data only, 3 datasets cited

[24404] doi:10.1111/epi.18113 [paper, repository]

SzCORE: Seizure Community Open-Source Research Evaluation framework for the validation of electroencephalography-based automated seizure detection algorithms.

Journal: Epilepsia

Authors' code: esl-epfl/sz-validation-framework (GPL-3.0), esl-epfl/epilepsy2bids (MIT), esl-epfl/timescoring (MIT)

Status: code verified, 38 files readable, 1 match

[24405] doi:10.1152/jn.00336.2024 [paper, data]

Contrast gain control is a reparameterization of a population response curve.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[24406] doi:10.1162/imag_a_00293 [paper, repository]

Free-water: A promising structural biomarker for cognitive decline in aging and mild cognitive impairment.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vmacdata.org (no license)

Status: code verified

[24407] doi:10.1162/imag_a_00294 [paper, repository]

Regional deep atrophy: Using temporal information to automatically identify regions associated with Alzheimer's disease progression from longitudinal MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MengjinDong/RegionalDeepAtrophy (Apache-2.0)

Status: code verified, 16 files readable, 3 matches

[24408] doi:10.1186/s10194-024-01854-8 [paper, repository]

Involvement of the cerebellum in structural connectivity enhancement in episodic migraine.

Journal: The journal of headache and pain

Authors' code: anamatoso/connectivity-analysis-diffusion (Apache-2.0)

Status: code verified, 17 files readable, 8 matches

[24409] doi:10.1186/s40478-024-01857-1 [paper, repository]

Molecular pathology, developmental changes and synaptic dysfunction in (pre-) symptomatic human C9ORF72-ALS/FTD cerebral organoids.

Journal: Acta neuropathologica communications

Authors' code: LucasESBS/scoreCT (MIT)

Status: code verified, 7 files readable

[24410] doi:10.1371/journal.pbio.3002653 [paper, repository]

Functional network modules overlap and are linked to interindividual connectome differences during human brain development.

Journal: PLoS biology

Authors' code: OSF qfcyu (no license), helab207/Development-of-the-overlapping-modular-structure-in-human-brain-functional-networks (no license)

Status: code verified, 8 files readable, 2 matches

[24411] doi:10.1371/journal.pone.0307158 [paper, data]

Cortical mechanisms of across-ear speech integration investigated using functional near-infrared spectroscopy (fNIRS).

Journal: PloS one

Status: data only, 1 dataset cited

[24412] doi:10.1371/journal.pone.0310727 [paper, data]

Expansion of a neural crest gene signature following ectopic MYCN expression in sympathoadrenal lineage cells in vivo.

Journal: PloS one

Status: data only, 1 dataset cited

[24413] doi:10.1523/jneurosci.2246-23.2024 [paper, repository]

Neural Activity Differentiates Novel and Learned Event Boundaries.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF mwjya (no license)

Status: code verified, 2 files readable

[24414] doi:10.2147/dddt.s479881 [paper, data]

Guanxinning Tablet Alleviates Post-Ischemic Stroke Injury Via Regulating Complement and Coagulation Cascades Pathway and Inflammatory Network Mobilization.

Journal: Drug design, development and therapy

Status: data only, 1 dataset cited

[24415] doi:10.2196/54025 [paper, data]

Japanese Perception of Brain Death and Implications for New Medical Technologies: Quantitative and Qualitative Social Media Analysis.

Journal: JMIR formative research

Status: data only, 1 dataset cited

[24416] doi:10.3389/fncel.2024.1440409 [paper, data]

Discovery of <i>GJC1</i> as a prognostic biomarker in glioma cells: insights into its cell-cycle relationship and differential expression in non-neuronal cells.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

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