Every paper, by date: page 108

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 108 of 200: 2 October 2024 to 27 September 2024.

Wednesday, 2 October 2024 (36 papers, 24 on this page)

[23969] doi:10.1038/s41586-024-07763-9 [paper, repository]

A Drosophila computational brain model reveals sensorimotor processing.

Journal: Nature

Authors' code: philshiu/Drosophila_brain_model (MIT)

Status: code verified, 6 files readable, 1 match

[23970] doi:10.1038/s41586-024-07854-7 [paper, repository]

Neural circuit mechanisms underlying context-specific halting in Drosophila.

Journal: Nature

Authors' code: bidaye-lab/Sapkal_et_al_2024 (MIT)

Status: code verified, 121 files readable, 21 matches

[23971] doi:10.1038/s41586-024-07953-5 [paper, repository]

Predicting visual function by interpreting a neuronal wiring diagram.

Journal: Nature

Authors' code: hsseung/OpticLobe.jl (MIT)

Status: code verified, 37 files readable, 16 matches

[23972] doi:10.1038/s41586-024-07967-z [paper, repository]

Connectomic reconstruction predicts visual features used for navigation.

Journal: Nature

Authors' code: Zenodo 13228138 (CC-BY-4.0), sungsoo-ucsb/garnerkindlai_metu (MIT)

Status: code verified, 44 files readable, 20 matches

[23973] doi:10.1038/s41586-024-07968-y [paper, repository]

Network statistics of the whole-brain connectome of Drosophila.

Journal: Nature

Authors' code: murthylab/flywire-network-analysis (MIT), Zenodo 12572930 (MIT), Zenodo 12572929 (MIT)

Status: code verified, 78 files readable, 7 matches

[23974] doi:10.1038/s41586-024-07972-2 [paper, repository]

CRISPR-Cas9 screens reveal regulators of ageing in neural stem cells.

Journal: Nature

Authors' code: dmorgens/castle (no license), Ruetz/Cas9_aging_NSC (no license)

Status: code verified, 60 files readable, 10 matches

[23975] doi:10.1038/s41586-024-07981-1 [paper, repository]

Neuronal parts list and wiring diagram for a visual system.

Journal: Nature

Authors' code: murthylab/visual-system-parts-list (Apache-2.0), hsseung/OpticLobe.jl (MIT)

Status: code verified, 40 files readable, 13 matches

[23976] doi:10.1038/s41586-024-07982-0 [paper, repository]

The fly connectome reveals a path to the effectome.

Journal: Nature

Authors' code: dp4846/conn2eff (no license)

Status: code verified, 15 files readable, 5 matches

[23977] doi:10.1038/s41586-024-08027-2 [paper, repository]

Calcium-permeable AMPA receptors govern PV neuron feature selectivity.

Journal: Nature

Authors' code: ingiehong/retinotopy (no license), ingiehong/StackGPS (no license), JoramKeijser/pv_selectivity (MIT)

Status: code verified, 339 files readable, 4 matches

[23978] doi:10.1038/s41698-024-00718-3 [paper]

Comparison of DNA methylation based classification models for precision diagnostics of central nervous system tumors.

Journal: NPJ precision oncology

Status: code on request

[23979] doi:10.1038/s41746-024-01253-y [paper, repository]

Machine learning explains response variability of deep brain stimulation on Parkinson's disease quality of life.

Journal: NPJ digital medicine

Authors' code: shap.readthedocs.io (no license)

Status: code verified

[23980] doi:10.1038/s42003-024-06927-7 [paper, repository]

A neural code supporting prospective probabilistic reasoning for instrumental information demand in humans.

Journal: Communications biology

Authors' code: OSF 6dq85 (no license)

Status: code verified, 23 files readable, 14 matches

[23981] doi:10.1038/s42003-024-06936-6 [paper, data]

nlr-1/CNTNAP regulates dopamine circuit structure and foraging behaviors in C. elegans.

Journal: Communications biology

Status: data only, 1 dataset cited

[23982] doi:10.1038/s44321-024-00148-5 [paper]

Pre-clinical development of AP4B1 gene replacement therapy for hereditary spastic paraplegia type 47.

Journal: EMBO molecular medicine

Status: data only

[23983] doi:10.1098/rsif.2024.0378 [paper, data]

Effect of infusion direction on convection-enhanced drug delivery to anisotropic tissue.

Journal: Journal of the Royal Society, Interface

Status: data only, 1 dataset cited

[23984] doi:10.1186/s13195-024-01575-9 [paper, repository]

Brain Iron in signature regions relating to cognitive aging in older adults: the Taizhou Imaging Study.

Journal: Alzheimer's research & therapy

Authors' code: kschan0214/sepia (MIT)

Status: code verified, 426 files readable, 2 matches

[23985] doi:10.1371/journal.pone.0298703 [paper, repository]

Cycling reduces the entropy of neuronal activity in the human adult cortex.

Journal: PloS one

Authors' code: OSF cw87p (no license), AlgosL/cycling-entropy (MIT), AlgosL/maxEntropy (MIT)

Status: code verified, 28 files readable

[23986] doi:10.1371/journal.pone.0310816 [paper, data]

Morphological encoding in language production: Electrophysiological evidence from Mandarin Chinese compound words.

Journal: PloS one

Status: data only, 1 dataset cited

[23987] doi:10.1523/jneurosci.2308-23.2024 [paper, data]

Aperiodic EEG Predicts Variability of Visual Temporal Processing.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[23988] doi:10.3389/fped.2024.1453778 [paper, data]

<i>WWOX</i>-related epileptic encephalopathy caused by a novel mutation in the <i>WWOX</i> gene: a case report.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[23989] doi:10.3390/biomedicines12102245 [paper]

Tetraspanins, GLAST and L1CAM Quantification in Single Extracellular Vesicles from Cerebrospinal Fluid and Serum of People with Multiple Sclerosis.

Journal: Biomedicines

Status: code on request

[23990] doi:10.3390/cells13191640 [paper, repository]

An Optimized Liquid Chromatography-Mass Spectrometry Method for Ganglioside Analysis in Cell Lines.

Journal: Cells

Authors' code: glycopost.glycosmos.org/preview/1269600027667984f46c0b2 (no license), andybennett7/ganglioside_method_paper (MIT)

Status: code found, still to be checked, 2 files readable

[23991] doi:10.7554/elife.88670 [paper, repository]

I-Spin live, an open-source software based on blind-source separation for real-time decoding of motor unit activity in humans.

Journal: eLife

Authors' code: simonavrillon/I-Spin (GPL-3.0)

Status: code verified, 33 files readable, 3 matches

[23992] doi:10.7554/elife.95599 [paper, repository]

Cardiac afferent signals can facilitate visual dominance in binocular rivalry.

Journal: eLife

Authors' code: Zenodo 10367327 (CC-BY-4.0), Zenodo 10367248 (CC-BY-4.0), Zenodo 10367326 (CC-BY-4.0), apex-lab/ecg-rivalry-experiment (no license)

Status: code verified, 50 files readable, 8 matches

Tuesday, 1 October 2024 (114 papers)

[23993] doi:10.1001/jamanetworkopen.2024.41159 [paper, repository]

Theta Burst Stimulation Protocols for Schizophrenia: A Systematic Review and Network Meta-Analysis.

Journal: JAMA network open

Authors' code: OSF bvz6p (no license)

Status: empty repository

[23994] doi:10.1002/brb3.70100 [paper, data]

CNN-Based Neurodegenerative Disease Classification Using QR-Represented Gait Data.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[23995] doi:10.1002/cam4.70288 [paper, data]

New Anti-Angiogenic Therapy for Glioblastoma With the Anti-Depressant Sertraline.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[23996] doi:10.1002/ctm2.70032 [paper, repository]

Structural inequality and temporal brain dynamics across diverse samples.

Journal: Clinical and translational medicine

Authors' code: euroladbrainlat/Structural-inequality-and-brain-dynamics-across-diverse-samples (no license)

Status: code verified, 5 files readable

[23997] doi:10.1002/ctm2.70055 [paper, repository]

Evolution of aberrant brain-wide spatiotemporal dynamics of resting-state networks in a Huntington's disease mouse model.

Journal: Clinical and translational medicine

Authors' code: DeVosLab/Huntington (CC-BY-NC-SA-4.0), Zenodo 14643766 (CC-BY-4.0), Zenodo 17358892 (CC-BY-4.0)

Status: code verified, 6 files readable

[23998] doi:10.1002/dad2.70024 [paper, repository]

Hippocampal volumes in UK Biobank are associated with &lt;i&gt;APOE&lt;/i&gt; only in older adults.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: BierutLab/ukb_apoe_hippocampus (MIT)

Status: code verified, 11 files readable, 4 matches

[23999] doi:10.1002/hbm.70000 [paper, repository]

Structural and functional brain alterations in laryngeal dystonia: A coordinate-based activation likelihood estimation meta-analysis.

Journal: Human brain mapping

Authors' code: simonyanlab.meei.harvard.edu/resources (no license)

Status: dead link

[24000] doi:10.1002/hbm.70010 [paper, repository]

Developmental patterns of inhibition and fronto-basal-ganglia white matter organisation in healthy children and children with attention-deficit/hyperactivity disorder.

Journal: Human brain mapping

Authors' code: fredvbrug/STOP-IT (no license), MervSingh/Longitudinal_SST_FBA_ADHD (no license)

Status: code verified, 93 files readable, 18 matches

[24001] doi:10.1002/hbm.70011 [paper, repository]

Dynamic transient brain states in preschoolers mirror parental report of behavior and emotion regulation.

Journal: Human brain mapping

Authors' code: OSF agu27 (no license)

Status: code verified, 11 files readable, 5 matches

[24002] doi:10.1002/hbm.70029 [paper, repository]

The alterations of repetitive transcranial magnetic stimulation on the energy landscape of resting-state networks differ across the human cortex.

Journal: Human brain mapping

Authors' code: Fanlming/flm-EnergyLandscape-rTMS (no license)

Status: code verified, 9 files readable, 2 matches

[24003] doi:10.1002/hbm.70030 [paper, repository]

Changes in the structure of spontaneous speech predict the disruption of hierarchical brain organization in first-episode psychosis.

Journal: Human brain mapping

Authors' code: RuiHe1999/FEP_gradient_sem_syn (no license)

Status: dead link

[24004] doi:10.1002/hbm.70034 [paper, repository]

RELAX-Jr: An Automated Pre-Processing Pipeline for Developmental EEG Recordings.

Journal: Human brain mapping

Authors' code: aronthill/relax-jr (GPL-3.0)

Status: code verified, 22 files readable, 7 matches

[24005] doi:10.1002/hbm.70038 [paper, repository]

The Influence of Structural Brain Changes on Cognition in the Context of Healthy Aging: Exploring Mediation Effects Through gBAT-The Graphical Brain Association Tool.

Journal: Human brain mapping

Authors' code: neurolabusc/nii_preprocess (no license), alexteghipco/gBAT (BSD-2-Clause), Zenodo 4027711 (other-open), rogiedodgie/nii_preprocess (no license)

Status: code verified, 335 files readable, 7 matches

[24006] doi:10.1002/hbm.70040 [paper, repository]

Neural Representations of Emotions in Visual, Auditory, and Modality-Independent Regions Reflect Idiosyncratic Conceptual Knowledge.

Journal: Human brain mapping

Authors' code: bids-matlab.readthedocs.io (no license)

Status: code verified

[24007] doi:10.1002/hbm.70041 [paper, repository]

Assessment of the Depiction of Superficial White Matter Using Ultra-High-Resolution Diffusion MRI.

Journal: Human brain mapping

Authors' code: pnlbwh/pnlutil (no license), pnlbwh/ukftractography (other)

Status: code verified, 353 files readable, 4 matches

[24008] doi:10.1002/hbm.70042 [paper, data]

Human Claustrum Connections: Robust In Vivo Detection by DWI-Based Tractography in Two Large Samples.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[24009] doi:10.1002/hbm.70043 [paper, repository]

Evaluating Models of the Ageing BOLD Response.

Journal: Human brain mapping

Authors' code: RikHenson/AgeingHRF (CC0-1.0), camcan-archive.mrc-cbu.cam.ac.uk/dataaccess (no license)

Status: code verified, 26 files readable, 9 matches

[24010] doi:10.1002/hbm.70046 [paper, repository]

Macroscale Gradient Dysfunction in Alzheimer's Disease: Patterns With Cognition Terms and Gene Expression Profiles.

Journal: Human brain mapping

Authors' code: YongLiulab (no license)

Status: code verified

[24011] doi:10.1002/hbm.70052 [paper, repository]

Neural Mechanisms of Social Interaction Perception: Observing Interpersonal Synchrony Modulates Action Observation Network Activation and Is Spared in Autism.

Journal: Human brain mapping

Authors' code: OSF cw7n4 (no license), Zenodo 4547552 (CC-BY-NC-SA-4.0)

Status: code verified, 2 files readable, 2 matches

[24012] doi:10.1002/hbm.70054 [paper, data]

The Effect of Segmentation Method on Medial Temporal Lobe Subregion Volumes in Aging.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[24013] doi:10.1002/hbm.70056 [paper, repository]

Selective Brain Activations and Connectivities Related to the Storage and Recall of Human Object-Location, Reward-Location, and Word-Pair Episodic Memories.

Journal: Human brain mapping

Authors' code: decolab/gec (CC-BY-NC-4.0)

Status: code verified, 6 files readable

[24014] doi:10.1007/s12021-024-09682-6 [paper, repository]

Interdisciplinary and Collaborative Training in Neuroscience: Insights from the Human Brain Project Education Programme.

Journal: Neuroinformatics

Authors' code: wiki.ebrains.eu/bin/view (no license), alperyeg/hbp_survey_plots (GPL-3.0), Zenodo 5535676 (CC-BY-4.0)

Status: code verified, 6 files readable

[24015] doi:10.1007/s12021-024-09694-2 [paper, repository]

Anatomic Interpretability in Neuroimage Deep Learning: Saliency Approaches for Typical Aging and Traumatic Brain Injury.

Journal: Neuroinformatics

Authors' code: irimia-laboratory/USC_BA_estimator (other)

Status: code verified, 8 files readable, 1 match

[24016] doi:10.1016/j.heliyon.2024.e38822 [paper]

SHANK2-AS3: A potential biomarker for Parkinson's disease and its role in neuronal apoptosis via NF-κB signaling in SH-SY5Y cells.

Journal: Heliyon

Status: data only

[24017] doi:10.1016/j.ijchp.2024.100527 [paper, data]

Neural and gaze pattern responses to happy faces in autism: Predictors of adaptive difficulties and re-evaluation of the social motivation hypothesis.

Journal: International journal of clinical and health psychology : IJCHP

Status: data only, 1 dataset cited

[24018] doi:10.1016/j.ijchp.2024.100533 [paper]

Social anxiety undermines prosocial behaviors when required effort.

Journal: International journal of clinical and health psychology : IJCHP

Status: code on request

[24019] doi:10.1016/j.isci.2024.111078 [paper, repository]

Dynamic lateralization in contralateral-projecting corticospinal neurons during motor learning.

Journal: iScience

Authors' code: Zenodo 13725619 (CC-BY-4.0)

Status: code verified, 1 file readable

[24020] doi:10.1016/j.xcrm.2024.101782 [paper]

Targeting exosomal double-stranded RNA-TLR3 signaling pathway attenuates morphine tolerance and hyperalgesia.

Journal: Cell reports. Medicine

Status: code on request

[24021] doi:10.1016/j.xcrm.2024.101788 [paper]

The μ-opioid receptor differentiates two distinct human nociceptive populations relevant to clinical pain.

Journal: Cell reports. Medicine

Status: code on request

[24022] doi:10.1021/acsomega.4c02468 [paper, data]

Boolean Circuits in Colloidal Mixtures of ZnO and Proteinoids.

Journal: ACS omega

Status: data only, 1 dataset cited

[24023] doi:10.1038/s41467-024-52265-x [paper, data]

Cryo-EM structure of Alzheimer's disease tau filaments with PET ligand MK-6240.

Journal: Nature communications

Status: data only, 1 dataset cited

[24024] doi:10.1038/s41467-024-52477-1 [paper, repository]

Potentiation of cortico-spinal output via targeted electrical stimulation of the motor thalamus.

Journal: Nature communications

Authors' code: emg27/dbsmotorthalamuspaper_2024 (no license)

Status: code verified, 38 files readable, 8 matches

[24025] doi:10.1038/s41467-024-52583-0 [paper, repository]

The genetic landscape of basal ganglia and implications for common brain disorders.

Journal: Nature communications

Authors' code: precimed/mostest (GPL-3.0), fuma.ctglab.nl (no license), precimed/pleiofdr (GPL-3.0), bulik/ldsc (GPL-3.0)

Status: code verified, 101 files readable, 4 matches

[24026] doi:10.1038/s41467-024-52807-3 [paper, repository]

A sexually transmitted sugar orchestrates reproductive responses to nutritional stress.

Journal: Nature communications

Authors' code: Zenodo 13643789 (CC-BY-4.0)

Status: code verified, 2 files readable, 5 matches

[24027] doi:10.1038/s41467-024-52814-4 [paper, repository]

Striato-pallidal oscillatory connectivity correlates with symptom severity in dystonia patients.

Journal: Nature communications

Authors' code: neuromodulation/wjn_toolbox (no license), Zenodo 13341588 (CC-BY-4.0)

Status: code verified, 1,245 files readable, 1 match

[24028] doi:10.1038/s41467-024-52898-y [paper, data]

Superior metabolic improvement of polycystic ovary syndrome traits after GLP1-based multi-agonist therapy.

Journal: Nature communications

Status: data only, 5 datasets cited

[24029] doi:10.1038/s41539-024-00274-2 [paper, repository]

Dynamic brain networks in spontaneous gestural communication.

Journal: NPJ science of learning

Authors' code: pikapika-005/code-for-dynamic-gestures (no license)

Status: code verified

[24030] doi:10.1038/s41597-024-03675-5 [paper, repository]

The magic, memory, and curiosity fMRI dataset of people viewing magic tricks.

Journal: Scientific data

Authors' code: stefaniemeliss/MMC_dataset (no license), stefaniemeliss/magmot (no license), stefaniemeliss/binder-mmc (no license)

Status: code verified, 142 files readable, 40 matches

[24031] doi:10.1038/s41598-024-71893-3 [paper, data]

Brain tumor detection and classification in MRI using hybrid ViT and GRU model with explainable AI in Southern Bangladesh.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24032] doi:10.1038/s42003-024-06926-8 [paper, repository]

Divergent subregional information processing in mouse prefrontal cortex during working memory.

Journal: Communications biology

Authors' code: figshare 26999575 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[24033] doi:10.1038/s42003-024-06941-9 [paper, repository]

Coordinated NREM sleep oscillations among hippocampal subfields modulate synaptic plasticity in humans.

Journal: Communications biology

Authors' code: ww2.mathworks.cn/matlabcentral/fileexchange (no license), ww2.mathworks.cn/en/products (no license), surfer.nmr.mgh.harvard.edu (no license)

Status: code verified

[24034] doi:10.1073/pnas.2302730121 [paper, repository]

Signatures of criticality in efficient coding networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: shervinsafavi/Safavi_etal_PNAS_2024 (BSD-3-Clause)

Status: code verified, 23 files readable

[24035] doi:10.1073/pnas.2403426121 [paper, data]

The &lt;i&gt;ivory&lt;/i&gt; lncRNA regulates seasonal color patterns in buckeye butterflies.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24036] doi:10.1080/07853890.2024.2407522 [paper, data]

Clinical characterization and founder effect analysis in Chinese amyotrophic lateral sclerosis patients with &lt;i&gt;SOD1&lt;/i&gt; common variants.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[24037] doi:10.1083/jcb.202402133 [paper, data]

Local glycolysis supports injury-induced axonal regeneration.

Journal: The Journal of cell biology

Status: data only, 1 dataset cited

[24038] doi:10.1093/bioinformatics/btae590 [paper, repository]

BEATRICE: Bayesian fine-mapping from summary data using deep variational inference.

Journal: Bioinformatics (Oxford, England)

Authors' code: sayangsep/Beatrice-Finemapping (MIT)

Status: code verified, 10 files readable, 5 matches

[24039] doi:10.1093/bioinformatics/btae611 [paper, repository]

Statistical batch-aware embedded integration, dimension reduction, and alignment for spatial transcriptomics.

Journal: Bioinformatics (Oxford, England)

Authors' code: zhanglabtools/STADIA (GPL-3.0)

Status: code verified, 20 files readable, 6 matches

[24040] doi:10.1093/brain/awae098 [paper, repository]

Brain morphometry in former American football players: findings from the DIAGNOSE CTE research project.

Journal: Brain : a journal of neurology

Authors' code: ggseg/ggseg (other), Zenodo 3666802 (CC-BY-4.0), Zenodo 3258854 (CC-BY-4.0), pnlbwh/pnlnipype (other), pnlbwh/luigi-pnlpipe (other)

Status: code verified, 167 files readable, 1 match

[24041] doi:10.1093/brain/awae219 [paper, repository]

Dopamine and deep brain stimulation accelerate the neural dynamics of volitional action in Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: richardkoehler/paper-motor-intention (MIT)

Status: code verified, 61 files readable, 9 matches

[24042] doi:10.1093/cercor/bhae401 [paper, data]

Intrinsic functional networks for distinct sources of error in visual working memory.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[24043] doi:10.1093/cercor/bhae405 [paper, repository]

Reconciliation of weak pairwise spike-train correlations and highly coherent local field potentials across space.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: INM-6/mesocircuit-model (GPL-3.0), LFPy/LFPykit (GPL-3.0), LFPy/LFPy (GPL-3.0), INM-6/hybridLFPy (GPL-3.0), Zenodo 13798935 (GPL-3.0), Zenodo 13799065 (GPL-3.0)

Status: code verified, 393 files readable, 15 matches

[24044] doi:10.1093/cercor/bhae409 [paper, repository]

Multi-scale spiking network model of human cerebral cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 13711671 (GPL-3.0), INM-6/human-multi-area-model (GPL-3.0), Zenodo 13934954 (GPL-3.0), Zenodo 13711672 (GPL-3.0)

Status: code verified, 452 files readable, 19 matches

[24045] doi:10.1093/cercor/bhae421 [paper, repository]

REVEALS: an open-source multi-camera GUI for rodent behavior acquisition.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: CruzMartinLab/REVEALS (no license)

Status: code verified, 3 files readable, 2 matches

[24046] doi:10.1093/g3journal/jkae203 [paper, repository]

Transcriptional repression and enhancer decommissioning silence cell cycle genes in postmitotic tissues.

Journal: G3 (Bethesda, Md.)

Authors' code: efogarty/CellCycleGene_Repression (no license)

Status: empty repository, 1 file readable

[24047] doi:10.1093/genetics/iyae125 [paper, data]

Adapting and optimizing GCaMP8f for use in Caenorhabditis elegans.

Journal: Genetics

Status: data only, 1 dataset cited

[24048] doi:10.1093/ijnp/pyae047 [paper, data]

Decreased Brain pH Correlated With Progression of Alzheimer Disease Neuropathology: A Systematic Review and Meta-Analyses of Postmortem Studies.

Journal: The international journal of neuropsychopharmacology

Status: data only, 1 dataset cited

[24049] doi:10.1093/jamia/ocae132 [paper, repository]

Can GPT-3.5 generate and code discharge summaries?

Journal: Journal of the American Medical Informatics Association : JAMIA

Authors' code: EdinburghClinicalNLP/chatgpt_icd_coding (no license)

Status: code verified, 8 files readable, 3 matches

[24050] doi:10.1093/jmcb/mjae020 [paper, data]

Sympathetic nerve signals: orchestrators of mammary development and stem cell vitality.

Journal: Journal of molecular cell biology

Status: data only, 1 dataset cited

[24051] doi:10.1093/molbev/msae186 [paper, data]

The Human Accelerated Region HAR202 Controls NPAS3 Expression in the Developing Forebrain Displaying Differential Enhancer Activity Between Modern and Archaic Human Sequences.

Journal: Molecular biology and evolution

Status: data only, 2 datasets cited

[24052] doi:10.1093/nar/gkae765 [paper]

DORQ-seq: high-throughput quantification of femtomol tRNA pools by combination of cDNA hybridization and Deep sequencing.

Journal: Nucleic acids research

Status: data only

[24053] doi:10.1093/nar/gkae776 [paper, data]

RTP801 interacts with the tRNA ligase complex and dysregulates its RNA ligase activity in Alzheimer's disease.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[24054] doi:10.1093/nar/gkae793 [paper, repository]

IRescue: uncertainty-aware quantification of transposable elements expression at single cell level.

Journal: Nucleic acids research

Authors' code: bodegalab/irescue (MIT), Zenodo 13479364 (CC-BY-4.0)

Status: code verified, 22 files readable, 11 matches

[24055] doi:10.1093/nar/gkae797 [paper, repository]

G-quadruplexes in an SVA retrotransposon cause aberrant TAF1 gene expression in X-linked dystonia parkinsonism.

Journal: Nucleic acids research

Authors' code: gencorefacility/reform (BSD-3-Clause)

Status: code verified, 5 files readable

[24056] doi:10.1093/scan/nsae061 [paper, repository]

The mutual influences between working memory and empathy for pain: the role of social distance.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 86gyx (no license)

Status: code verified, 3 files readable, 2 matches

[24057] doi:10.1093/scan/nsae063 [paper, repository]

Neural dynamics underlying the illusion of control during reward processing.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF 394gc (no license)

Status: code verified, 1 file readable, 2 matches

[24058] doi:10.1096/fj.202401696r [paper, data]

Selective depletion of kisspeptin neurons in the hypothalamic arcuate nucleus in early juvenile life reduces pubertal LH secretion and delays puberty onset in mice.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[24059] doi:10.1096/fj.202401931r [paper, data]

KCNB1-Leptin receptor complexes couple electric and endocrine function in the melanocortin neurons of the hypothalamus.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 2 datasets cited

[24060] doi:10.1097/md.0000000000039205 [paper, data]

Construction and validation of cell cycle-related prognostic genetic model for glioblastoma.

Journal: Medicine

Status: data only, 1 dataset cited

[24061] doi:10.1097/md.0000000000040166 [paper, data]

Bioinformatics and network pharmacology discover the molecular mechanism of Liuwei Dihuang pills in treating cerebral palsy.

Journal: Medicine

Status: data only, 1 dataset cited

[24062] doi:10.1111/cns.70049 [paper]

Inhibiting endoplasmic reticulum stress alleviates perioperative neurocognitive disorders by reducing neuroinflammation mediated by NLRP3 inflammasome activation.

Journal: CNS neuroscience & therapeutics

Status: data only

[24063] doi:10.1111/cns.70064 [paper, repository]

Novel Insights Into DLAT's Role in Alzheimer's Disease-Related Copper Toxicity Through Microglial Exosome Dynamics.

Journal: CNS neuroscience & therapeutics

Authors' code: satijalab/seurat (other)

Status: code verified, 136 files readable, 2 matches

[24064] doi:10.1111/cns.70066 [paper, data]

MEF2C Alleviates Postoperative Cognitive Dysfunction by Repressing Ferroptosis.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[24065] doi:10.1111/cns.70068 [paper, data]

Neobavaisoflavone Ameliorates Memory Deficits and Brain Damage in Aβ&lt;sub&gt;25-35&lt;/sub&gt;-Induced Mice by Regulating SIRT1.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[24066] doi:10.1111/cns.70070 [paper, data]

Genetic Analysis of Neurite Outgrowth Inhibitor-Associated Genes in Parkinson's Disease: A Cross-Sectional Cohort Study.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[24067] doi:10.1111/cns.70075 [paper, data]

SOXC Enhances NGN2-Mediated Reprogramming of Glioblastoma Cells Into Neuron-Like Cells by Modulating RhoA and RAC1/CDC42 Pathway Activity.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[24068] doi:10.1111/cns.70093 [paper]

Role of Hippocampal Glutamatergic Synaptic Alterations in Sevoflurane-Induced Cognitive Dysfunction in Aged Mice.

Journal: CNS neuroscience & therapeutics

Status: data only

[24069] doi:10.1111/gbb.12907 [paper, repository]

Divergent neural nodes are species- and hormone-dependent in the brood parasitic brain.

Journal: Genes, brain, and behavior

Authors' code: OSF tgpsw (no license)

Status: code verified, 4 files readable, 3 matches

[24070] doi:10.1111/jcmm.70177 [paper, data]

Exploring the prognostic value and potential therapeutic strategies of MS4A6A in glioblastoma: A comprehensive analysis of single-cell and multi-omics data.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[24071] doi:10.1117/1.nph.11.4.045008 [paper, repository]

NiReject: toward automated bad channel detection in functional near-infrared spectroscopy.

Journal: Neurophotonics

Authors' code: ChristianGerloff/nireject-publication (no license), ChristianGerloff/badchannelcard (no license)

Status: code verified, 21 files readable, 4 matches

[24072] doi:10.1117/1.nph.11.4.045009 [paper]

Cerebral baseline optical and hemodynamic properties in pediatric population: a large cohort time-domain near-infrared spectroscopy study.

Journal: Neurophotonics

Status: code on request

[24073] doi:10.1117/1.nph.11.4.045010 [paper]

Mapping multi-regional functional connectivity of astrocyte-neuronal networks during behaviors.

Journal: Neurophotonics

Status: code on request

[24074] doi:10.1117/1.nph.11.4.045011 [paper]

Customizable optode attachments to improve hair clearance timing and inclusiveness in functional near-infrared spectroscopy research.

Journal: Neurophotonics

Status: code on request

[24075] doi:10.1117/1.nph.11.4.045012 [paper]

Mid-infrared photoacoustic brain imaging enabled by cascaded gas-filled hollow-core fiber lasers.

Journal: Neurophotonics

Status: code on request

[24076] doi:10.1117/1.nph.11.4.045013 [paper]

Assessment of residual awareness in patients with disorders of consciousness using functional near-infrared spectroscopy-based connectivity: a pilot study.

Journal: Neurophotonics

Status: code on request

[24077] doi:10.1117/1.nph.11.4.045015 [paper, repository]

Explainable fNIRS-based pain decoding under pharmacological conditions via deep transfer learning approach.

Journal: Neurophotonics

Authors' code: aykuteken/Pain_decoding (no license)

Status: code verified, 6 files readable, 4 matches

[24078] doi:10.1162/imag_a_00297 [paper, repository]

Tone language experience enhances dimension-selective attention and subcortical encoding but not cortical entrainment to pitch.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF ajgrn (no license)

Status: code verified, 10 files readable, 1 match

[24079] doi:10.1162/imag_a_00300 [paper, repository]

BrainQCNet: A Deep Learning attention-based model for the automated detection of artifacts in brain structural MRI scans.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: garciaml/BrainQCNet (no license), garciaml/BrainQCNet_CPU (Apache-2.0), garciaml/BrainQCNet_GPU (Apache-2.0), garciaml/BrainQCNet_CPU_non_containerized (Apache-2.0), garciaml/BrainQCNet_CNN_GPU (Apache-2.0)

Status: code verified, 74 files readable

[24080] doi:10.1162/imag_a_00301 [paper, repository]

A supervised data-driven spatial filter denoising method for speech artifacts in intracranial electrophysiological recordings.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Brain-Modulation-Lab/bmlbmlbmlbmlbml (no license), svendaehne/matlab_SSD (no license), neurophysics/PCO_matlab (MIT), modeldb:152539 (no license), Brain-Modulation-Lab/PCD (no license)

Status: code verified, 105 files readable, 12 matches

[24081] doi:10.1162/netn_a_00368 [paper, repository]

Modeling the impact of MRI acquisition bias on structural connectomes: Harmonizing structural connectomes.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 4587906 (BSD-3-Clause), connectomicslab/connectomemapper3 (BSD-3-Clause)

Status: code verified, 154 files readable, 6 matches

[24082] doi:10.1162/netn_a_00370 [paper, repository]

Retinal waves in adaptive rewiring networks orchestrate convergence and divergence in the visual system.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: raullunadelvalle/Adaptive_Rewiring_CalciumWaves (CC-BY-4.0)

Status: code verified, 18 files readable, 3 matches

[24083] doi:10.1162/netn_a_00371 [paper, repository]

Brain sodium MRI-derived priors support the estimation of epileptogenic zones using personalized model-based methods in epilepsy.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: HuifangWang/VEP_atlas_shared (no license)

Status: code verified, 4 files readable, 2 matches

[24084] doi:10.1162/netn_a_00375 [paper, repository]

Topological cluster statistic (TCS): Toward structural connectivity-guided fMRI cluster enhancement.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: sina-mansour/Topological_Cluster_Statistic (no license), Zenodo 5746619 (MIT), sina-mansour/connectome-spatial-smoothing (MIT)

Status: code verified, 21 files readable, 5 matches

[24085] doi:10.1162/netn_a_00377 [paper, repository]

Reorganization of structural connectivity in the brain supports preservation of cognitive ability in healthy aging.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: neudorf/sc-efficiency-aging (Apache-2.0)

Status: code verified, 11 files readable, 7 matches

[24086] doi:10.1162/netn_a_00378 [paper, repository]

Developmental differences in canonical cortical networks: Insights from microstructure-informed tractography.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: daducci/COMMIT (other)

Status: code verified, 41 files readable

[24087] doi:10.1162/netn_a_00379 [paper, repository]

Propagation of transient explosive synchronization in a mesoscale mouse brain network model of epilepsy.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: csndl-iitd/tES_mesoscale_connectivity_model (Unlicense)

Status: code verified, 17 files readable, 4 matches

[24088] doi:10.1162/netn_a_00381 [paper, repository]

Analyzing asymmetry in brain hierarchies with a linear state-space model of resting-state fMRI data.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: danilobenozzo/dCCov_rsfMRI (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

[24089] doi:10.1162/netn_a_00383 [paper, repository]

Network-level enrichment provides a framework for biological interpretation of machine learning results.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: WheelockLab/NetworkLevelAnalysisBeta (GPL-3.0), WheelockLab/MachineLearning_NetworkLevelAnalysis (no license)

Status: code verified, 59 files readable

[24090] doi:10.1162/netn_a_00384 [paper, repository]

A Bayesian incorporated linear non-Gaussian acyclic model for multiple directed graph estimation to study brain emotion circuit development in adolescence.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Aiying0512/BiLiNGAM (no license), Aiying0512 (no license)

Status: code verified, 4 files readable, 1 match

[24091] doi:10.1162/netn_a_00386 [paper, repository]

An information-theoretic framework for conditional causality analysis of brain networks.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: LipengNing/ME-GCM (other)

Status: code verified, 24 files readable, 2 matches

[24092] doi:10.1162/netn_a_00387 [paper, repository]

Individual variability in neural representations of mind-wandering.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: thomasyeolab/cbig (MIT), swglab/CPM_CONN (no license), monicadrosenberg/rosenberg_pnas2020 (GPL-3.0)

Status: code verified, 2,020 files readable, 14 matches

[24093] doi:10.1167/iovs.65.12.39 [paper, data]

Differential Effect of Aldosterone or Mineralocorticoid Receptor Overexpression on Retinal Inflammation.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[24094] doi:10.1167/iovs.65.12.42 [paper, data]

Tissue-Specific Immune Transcriptional Signatures in the Bordering Tissues of the Mouse Retina and Brain.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[24095] doi:10.1167/jov.24.11.6 [paper, repository]

The visual experience dataset: Over 200 recorded hours of integrated eye movement, odometry, and egocentric video.

Journal: Journal of vision

Authors' code: vedb/pupil_recording_interface (GPL-3.0), vedb/ved-capture (no license), vedb/vedb_gaze_1.0 (no license), bszek213/odopy (GPL-3.0), bszek213/head_eye (no license), vedb/protect_privacy (no license), vedb (no license)

Status: code verified, 128 files readable, 8 matches

[24096] doi:10.1172/jci178628 [paper, data]

Dual targeting macrophages and microglia is a therapeutic vulnerability in models of PTEN-deficient glioblastoma.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[24097] doi:10.1182/bloodadvances.2023011145 [paper, repository]

A brain organoid/ALL coculture model reveals the AP-1 pathway as critically associated with CNS involvement of BCP-ALL.

Journal: Blood advances

Authors' code: BIOGOAT/organoid_leukemia_analysis (no license)

Status: code verified, 3 files readable

[24098] doi:10.1186/s12859-024-05947-8 [paper, repository]

SimplySmart_v1, a new tool for the analysis of DNA damage optimized in primary neuronal cultures.

Journal: BMC bioinformatics

Authors' code: AnnaEKonopka/SimplySmart_v1_materials (no license)

Status: code verified, 1,111 files readable

[24099] doi:10.1210/endocr/bqae151 [paper, data]

GnRH-Gonadotropes Interactions Revealed by Pituitary Single-cell Transcriptomics in Zebrafish.

Journal: Endocrinology

Status: data only, 3 datasets cited

[24100] doi:10.1371/journal.pbio.3002822 [paper, data]

Experience-dependent serotonergic signaling in glia regulates targeted synapse elimination.

Journal: PLoS biology

Status: data only, 1 dataset cited

[24101] doi:10.14791/btrt.2024.0035 [paper, data]

The Inflammatory Characteristics of Symptomatic Glioma Associated With Poor Prognosis and Chemoresistance via Tumor Necrosis Factor Signaling Pathway.

Journal: Brain tumor research and treatment

Status: data only, 1 dataset cited

[24102] doi:10.2337/dc24-0860 [paper, data]

Diabetes, Prediabetes, and Brain Aging: The Role of Healthy Lifestyle.

Journal: Diabetes care

Status: data only, 1 dataset cited

[24103] doi:10.30498/ijb.2024.448826.3892 [paper]

Identification and Verification of Key Genes Associated with Temozolomide Resistance in Glioblastoma Based on Comprehensive Bioinformatics Analysis.

Journal: Iranian journal of biotechnology

Status: data only

[24104] doi:10.3390/biomedicines12102237 [paper]

Unveiling the Molecular Mechanisms of Glioblastoma through an Integrated Network-Based Approach.

Journal: Biomedicines

Status: code on request

[24105] doi:10.4103/tjo.tjo-d-24-00064 [paper, repository]

Discriminative, generative artificial intelligence, and foundation models in retina imaging.

Journal: Taiwan journal of ophthalmology

Authors' code: rmaphoh/RETFound_MAE (CC-BY-NC-4.0)

Status: code verified, 14 files readable

[24106] doi:10.7554/elife.97545 [paper, data]

GABAergic inhibition in human hMT+ predicts visuo-spatial intelligence mediated through the frontal cortex.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 30 September 2024 (35 papers)

[24107] doi:10.1016/j.isci.2024.111069 [paper]

LY-2183240 enhances reward-seeking behavior with inducing neuronal excitation and early apoptosis in mouse.

Journal: iScience

Status: code on request

[24108] doi:10.1016/j.isci.2024.111087 [paper, repository]

Neuromonitoring-guided working memory intervention in children with ADHD.

Journal: iScience

Authors' code: lpollonini/qt-nirs (CC-BY-NC-SA-4.0)

Status: code verified, 12 files readable, 2 matches

[24109] doi:10.1016/j.isci.2024.111089 [paper]

Ketamine induced gut microbiota dysbiosis and barrier and hippocampal dysfunction in rats.

Journal: iScience

Status: code on request

[24110] doi:10.1016/j.xpro.2024.103331 [paper, repository]

Protocol for an open-source system to integrate calcium imaging, pupillometry, and locomotion-estimated tracking in head-fixed mice.

Journal: STAR protocols

Authors' code: UNC-optics/CaPuLeT (no license)

Status: code verified, 7 files readable, 6 matches

[24111] doi:10.1038/s41380-024-02764-6 [paper, repository]

A functional parcellation of the whole brain in high-functioning individuals with autism spectrum disorder reveals atypical patterns of network organization.

Journal: Molecular psychiatry

Authors' code: OSF yt87z (no license), persichetti-lab/FunMaps (no license)

Status: code verified, 8 files readable, 1 match

[24112] doi:10.1038/s41419-024-07088-5 [paper, data]

SALL2 regulates neural differentiation of mouse embryonic stem cells through Tuba1a.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[24113] doi:10.1038/s41467-024-52186-9 [paper, repository]

The morphospace of the brain-cognition organisation.

Journal: Nature communications

Authors' code: vale-pak/BCS (no license), Zenodo 11186952 (CC-BY-4.0)

Status: code verified, 8 files readable

[24114] doi:10.1038/s41537-024-00496-8 [paper, repository]

Irregularity of visual motion perception and negative symptoms in schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: YiFanamazing/YiFan-SZmain (no license)

Status: code verified, 13 files readable

[24115] doi:10.1038/s41539-024-00270-6 [paper, repository]

Structural and transcriptional signatures of arithmetic abilities in children.

Journal: NPJ science of learning

Authors' code: Dzhang1989z/MathDeveloping (no license)

Status: code verified, 3 files readable

[24116] doi:10.1038/s41588-024-01933-1 [paper, repository]

Multivariate genomic analysis of 5 million people elucidates the genetic architecture of shared components of the metabolic syndrome.

Journal: Nature genetics

Authors' code: annafurtjes/genomicpca (no license), GenomicSEM/GenomicSEM (GPL-3.0), bulik/ldsc (GPL-3.0), brielin/Popcorn (no license), Zenodo 13137680 (CC-BY-4.0), sanghyeonp/park-nature-genetics-2024 (MIT)

Status: code verified, 503 files readable, 14 matches

[24117] doi:10.1038/s41593-024-01769-2 [paper, repository]

Proinflammatory immune cells disrupt angiogenesis and promote germinal matrix hemorrhage in prenatal human brain.

Journal: Nature neuroscience

Authors' code: LehtinenLab/Shipley2020 (no license)

Status: code verified, 46 files readable

[24118] doi:10.1038/s41598-024-73967-8 [paper, data]

Right visual field advantage in orientation discrimination is influenced by biased suppression.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24119] doi:10.1038/s41698-024-00713-8 [paper, repository]

Integrated multi-omics assessment of lineage plasticity in a prostate cancer patient with brain and dural metastases.

Journal: NPJ precision oncology

Authors' code: Zenodo 13821252 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[24120] doi:10.1038/s42003-024-06807-0 [paper, repository]

Genetic fingerprinting with heritable phenotypes of the resting-state brain network topology.

Journal: Communications biology

Authors' code: hprmtbbd/genetic_neural_fingerprinting (no license)

Status: code verified, 27 files readable, 16 matches

[24121] doi:10.1038/s42003-024-06858-3 [paper, repository]

Dynamical structure-function correlations provide robust and generalizable signatures of consciousness in humans.

Journal: Communications biology

Authors' code: Krigsa/phase_coherence_kmeans (MIT), Zenodo 13374393 (CC-BY-4.0)

Status: code verified, 6 files readable, 5 matches

[24122] doi:10.1038/s42003-024-06913-z [paper, repository]

FMRI speech tracking in primary and non-primary auditory cortex while listening to noisy scenes.

Journal: Communications biology

Authors' code: Zenodo 13359542 (CC-BY-NC-4.0)

Status: code verified, 8 files readable, 2 matches

[24123] doi:10.1080/17582024.2024.2404386 [paper, data]

Current and future applications of local field potential-guided programming for Parkinson's disease with the Percept™ rechargeable neurostimulator.

Journal: Neurodegenerative disease management

Status: data only, 1 dataset cited

[24124] doi:10.1159/000541670 [paper, data]

Epidemiology and Outcomes Associated with Cognitive Frailty and Reserve in a Stroke Population: Systematic Review and Meta-Analysis.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[24125] doi:10.1186/s11689-024-09573-6 [paper, data]

Association between rare, genetic variants linked to autism and ultrasonography fetal anomalies in children with autism spectrum disorder.

Journal: Journal of neurodevelopmental disorders

Status: data only, 1 dataset cited

[24126] doi:10.1186/s13229-024-00613-5 [paper, repository]

A 3D approach to understanding heterogeneity in early developing autisms.

Journal: Molecular autism

Authors' code: IIT-LAND/a3d_msel_vabs (GPL-3.0), IIT-LAND/reval_clustering (GPL-3.0)

Status: code verified, 55 files readable, 23 matches

[24127] doi:10.1186/s13229-024-00619-z [paper, repository]

Phenome-wide profiling identifies genotype-phenotype associations in Phelan-McDermid syndrome using family-sourced data from an international registry.

Journal: Molecular autism

Authors' code: hms-dbmi/PMSDN_R-ETL (no license), hms-dbmi/PMSDN_GenoPheno (no license)

Status: code verified, 24 files readable, 6 matches

[24128] doi:10.1186/s13229-024-00625-1 [paper, data]

Identifying SETBP1 haploinsufficiency molecular pathways to improve patient diagnosis using induced pluripotent stem cells and neural disease modelling.

Journal: Molecular autism

Status: data only, 2 datasets cited

[24129] doi:10.1242/dev.202764 [paper, data]

Developmental emergence of first- and higher-order thalamic neuron molecular identities.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[24130] doi:10.1242/dev.202973 [paper, data]

Retinoic acid, an essential component of the roof plate organizer, promotes the spatiotemporal segregation of dorsal neural fates.

Journal: Development (Cambridge, England)

Status: data only, 3 datasets cited

[24131] doi:10.3389/fimmu.2024.1343805 [paper, data]

Unlocking the secrets of NPSLE: the role of dendritic cell-secreted CCL2 in blood-brain barrier disruption.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[24132] doi:10.3389/fimmu.2024.1434300 [paper, data]

IGFBP7+ subpopulation and IGFBP7 risk score in astrocytoma: insights from scRNA-Seq and bulk RNA-Seq.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[24133] doi:10.3389/fmed.2024.1415058 [paper, repository]

Whole-body PET image denoising for reduced acquisition time.

Journal: Frontiers in medicine

Authors' code: junyanz/pytorch-CycleGAN-and-pix2pix (BSD-3-Clause)

Status: code verified, 55 files readable, 9 matches

[24134] doi:10.3390/bioengineering11100993 [paper, repository]

A Novel Detection and Classification Framework for Diagnosing of Cerebral Microbleeds Using Transformer and Language.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: ai-application/MM-UniCMBs (Apache-2.0)

Status: code verified, 103 files readable, 3 matches

[24135] doi:10.3390/biology13100787 [paper]

Codes between Poles: Linking Transcriptomic Insights into the Neurobiology of Bipolar Disorder.

Journal: Biology

Status: data only

[24136] doi:10.3390/brainsci14100997 [paper, repository]

Visual Perceptual Learning of Form-Motion Integration: Exploring the Involved Mechanisms with Transfer Effects and the Equivalent Noise Approach.

Journal: Brain sciences

Authors' code: OSF whtpd (no license)

Status: code verified, 351 files readable

[24137] doi:10.3390/cells13191634 [paper, repository]

Alternative Balance between Transcriptional and Epigenetic Regulation during Developmental Proliferation of Human Cranial Neural Crest Cells.

Journal: Cells

Authors' code: bioinform (no license), cdesterke/CNCC_scripts (no license)

Status: code verified, 10 files readable, 10 matches

[24138] doi:10.3390/diagnostics14192189 [paper, data]

Classification of Alzheimer's Disease and Frontotemporal Dementia Using Electroencephalography to Quantify Communication between Electrode Pairs.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[24139] doi:10.6026/9732063002001017 [paper, repository]

Oral health care concerns among autism patients: A review.

Journal: Bioinformation

Authors' code: Zenodo 11485287 (CC-BY-4.0)

Status: empty repository

[24140] doi:10.7554/elife.91941 [paper, repository]

Machine learning and biological validation identify sphingolipids as potential mediators of paclitaxel-induced neuropathy in cancer patients.

Journal: eLife

Authors' code: cran.r-project.org/package=umatrix (no license), jornlotsch/paclitaxelneuropathyproject (GPL-3.0)

Status: code verified, 10 files readable, 7 matches

[24141] doi:10.7554/elife.92080 [paper, repository]

Neuro-evolutionary evidence for a universal fractal primate brain shape.

Journal: eLife

Authors' code: cnnp-lab/CorticalFoldingAnalysisTools (GPL-3.0), cnnp-lab/2024_Folding_scales (MIT), Zenodo 12820610 (CC-BY-4.0)

Status: code verified, 782 files readable

Sunday, 29 September 2024 (8 papers)

[24142] doi:10.1002/jcsm.13608 [paper, repository]

Muscle Fat and Volume Differences in People With Hip-Related Pain Compared With Controls: A Machine Learning Approach.

Journal: Journal of cachexia, sarcopenia and muscle

Authors' code: MuscleMap (no license)

Status: code verified

[24143] doi:10.1007/s00335-024-10072-1 [paper, data]

Digital tools of analysis and data integration facilitate synergy between mouse and human brain research and enable translation.

Journal: Mammalian genome : official journal of the International Mammalian Genome Society

Status: data only, 1 dataset cited

[24144] doi:10.1016/j.ibneur.2024.09.004 [paper, data]

Immune signature of gene expression pattern shared by autism spectrum disorder and Huntington's disease.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[24145] doi:10.1038/s41467-024-52723-6 [paper, repository]

RAB12-LRRK2 complex suppresses primary ciliogenesis and regulates centrosome homeostasis in astrocytes.

Journal: Nature communications

Authors' code: JUMPSuite/JUMP (no license)

Status: code verified, 120 files readable, 2 matches

[24146] doi:10.1038/s41467-024-52743-2 [paper, data]

Regulation of leptin signaling and diet-induced obesity by SEL1L-HRD1 ER-associated degradation in POMC expressing neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[24147] doi:10.1038/s41598-024-73579-2 [paper, repository]

MiRNA expression profiling reveals a potential role of microRNA-148b-3p in cerebral vasospasm in subarachnoid hemorrhage.

Journal: Scientific reports

Authors' code: dataview.ncbi.nlm.nih.gov/object/prjna1095482 (no license)

Status: code verified

[24148] doi:10.3390/biom14101230 [paper, data]

Boosting Serotonin Synthesis Is Not Sufficient to Improve Motor Coordination of &lt;i&gt;Mecp2&lt;/i&gt; Heterozygous Mouse Model of Rett Syndrome.

Journal: Biomolecules

Status: data only, 1 dataset cited

[24149] doi:10.3390/brainsci14100992 [paper, repository]

Estimated Disease Progression Trajectory of White Matter Disruption in Unilateral Temporal Lobe Epilepsy: A Data-Driven Machine Learning Approach.

Journal: Brain sciences

Authors' code: ucl-pond/SuStaInMatlab (no license)

Status: code verified, 20 files readable

Saturday, 28 September 2024 (22 papers)

[24150] doi:10.1002/acn3.52204 [paper, repository]

Temporopolar blurring signifies abnormalities of white matter in mesial temporal lobe epilepsy.

Journal: Annals of clinical and translational neurology

Authors' code: johncolby/along-tract-stats (GPL-3.0)

Status: code verified, 23 files readable

[24151] doi:10.1002/advs.202402967 [paper, repository]

Graphene Microelectrode Arrays, 4D Structured Illumination Microscopy, and a Machine Learning Spike Sorting Algorithm Permit the Analysis of Ultrastructural Neuronal Changes During Neuronal Signaling in a Model of Niemann-Pick Disease Type C.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: MariusBrockhoff/GrapheneMEASpikeSortImaging (MIT)

Status: code verified, 23 files readable, 6 matches

[24152] doi:10.1016/j.csbj.2024.09.022 [paper, repository]

Analysis of transcription profiles for the identification of master regulators as the key players in glioblastoma.

Journal: Computational and structural biotechnology journal

Authors' code: serivanov86/glioblastoma_MR (no license)

Status: code verified, 2 files readable

[24153] doi:10.1016/j.dcn.2024.101458 [paper, repository]

Advancing the reporting of pediatric EEG data: Tools for estimating reliability, effect size, and data quality metrics.

Journal: Developmental cognitive neuroscience

Authors' code: PINE-Lab/HAPPE (GPL-3.0)

Status: code verified, 2,000 files readable, 8 matches

[24154] doi:10.1016/j.ensci.2024.100530 [paper]

Levodopa / opicapone as a complement to STN-DBS in clinical practice. A retrospective single-centre analysis.

Journal: eNeurologicalSci

Status: code on request

[24155] doi:10.1016/j.isci.2024.111065 [paper, data]

Single-nucleus RNA sequencing-based construction of a hippocampal neuron atlas in mice with epileptic cognitive impairment.

Journal: iScience

Status: code on request, 1 dataset cited

[24156] doi:10.1016/j.xpro.2024.103352 [paper]

Protocol for the efficient and inducible generation of CRISPR-Cas9-edited human cortical neurons from the iCas9-iNgn2 hPSCs.

Journal: STAR protocols

Status: code on request

[24157] doi:10.1038/s41380-024-02759-3 [paper]

Generalizable and transportable resting-state neural signatures characterized by functional networks, neurotransmitters, and clinical symptoms in autism.

Journal: Molecular psychiatry

Status: code on request

[24158] doi:10.1038/s41467-024-52539-4 [paper, data]

Structural basis for the rescue of hyperexcitable cells by the amyotrophic lateral sclerosis drug Riluzole.

Journal: Nature communications

Status: data only, 1 dataset cited

[24159] doi:10.1038/s41467-024-52758-9 [paper, repository]

Experience of Euclidean geometry sculpts the development and dynamics of rodent hippocampal sequential cell assemblies.

Journal: Nature communications

Authors' code: GDYlab/GDYlabcode (no license), Zenodo 13539650 (CC-BY-4.0)

Status: code verified, 204 files readable, 9 matches

[24160] doi:10.1038/s41525-024-00426-8 [paper, repository]

Polygenic scores stratify neurodevelopmental copy number variant carrier cognitive outcomes in the UK Biobank.

Journal: NPJ genomic medicine

Authors' code: TomODuinnin/UKBscripts (no license)

Status: empty repository, 1 file readable

[24161] doi:10.1038/s41598-024-72945-4 [paper, repository]

Characterization of the temporal stability of ToM and pain functional brain networks carry distinct developmental signatures during naturalistic viewing.

Journal: Scientific reports

Authors' code: cbdl/workspace (no license)

Status: dead link

[24162] doi:10.1038/s41598-024-73033-3 [paper, data]

Brain gene expression reveals pathways underlying nocturnal migratory restlessness.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24163] doi:10.1038/s42003-024-06859-2 [paper, repository]

Predictive modeling of evoked intracranial EEG response to medial temporal lobe stimulation in patients with epilepsy.

Journal: Communications biology

Authors' code: Zenodo 13381963 (CC-BY-4.0)

Status: code verified, 8 files readable, 1 match

[24164] doi:10.1038/s42003-024-06877-0 [paper, repository]

Abnormal structural‒functional coupling patterning in progressive supranuclear palsy is associated with diverse gradients and histological features.

Journal: Communications biology

Authors' code: FZJ-INM1-BDA/celldetection (Apache-2.0), Chaogan-Yan/DPABI (LGPL-2.1), PennBBL/baumNetCoupling (GPL-3.0), amnsbr/laminar_organization (no license)

Status: code verified, 1,050 files readable, 4 matches

[24165] doi:10.1038/s42003-024-06890-3 [paper, repository]

Imaging genetics of language network functional connectivity reveals links with language-related abilities, dyslexia and handedness.

Journal: Communications biology

Authors' code: hub.docker.com/r/dnanexus (no license), cnsgenomics.com/software/gcta (no license), precimed/mostest (GPL-3.0), fuma.ctglab.nl (no license), getian107/PRScs (MIT), rgcgithub.github.io/regenie (no license), jsamelink/langnet_paper (no license)

Status: code verified, 30 files readable, 5 matches

[24166] doi:10.1038/s42003-024-06898-9 [paper, data]

Novel microglial transcriptional signatures promote social and cognitive deficits following repeated social defeat.

Journal: Communications biology

Status: data only, 1 dataset cited

[24167] doi:10.1186/s12014-024-09507-3 [paper, data]

Biomarker discovery in progressive supranuclear palsy from human cerebrospinal fluid.

Journal: Clinical proteomics

Status: data only, 3 datasets cited

[24168] doi:10.1186/s12974-024-03230-4 [paper, data]

Neuroinflammatory responses and blood-brain barrier injury in chronic alcohol exposure: role of purinergic P2 × 7 Receptor signaling.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[24169] doi:10.1186/s12993-024-00252-z [paper]

Paternal preconception donepezil exposure enhances learning in offspring.

Journal: Behavioral and brain functions : BBF

Status: data only

[24170] doi:10.3390/brainsci14100987 [paper, repository]

A Lightweight Multi-Mental Disorders Detection Method Using Entropy-Based Matrix from Single-Channel EEG Signals.

Journal: Brain sciences

Authors' code: 75Fleven/CODE (no license)

Status: code verified, 24 files readable

[24171] doi:10.3390/ph17101292 [paper, repository]

Prominent Neuroprotective Potential of Indole-2-<i>N</i>-methylpropargylamine: High Affinity and Irreversible Inhibition Efficiency towards Monoamine Oxidase B Revealed by Computational Scaffold Analysis.

Journal: Pharmaceuticals (Basel, Switzerland)

Authors' code: lvrban2/monoamine-oxidase-b-and-indole-2-n-methylpropargylamine (no license)

Status: empty repository, 1 file readable

Friday, 27 September 2024 (40 papers, 21 on this page)

[24172] doi:10.1007/s12672-024-01388-0 [paper, data]

Actin like 6A is a prognostic biomarker and associated with immune cell infiltration in cancers.

Journal: Discover oncology

Status: data only, 1 dataset cited

[24173] doi:10.1016/j.jaacop.2024.09.008 [paper, data]

COVID-19 Pandemic-Related Prenatal Distress and Infant Functional Brain Development.

Journal: JAACAP open

Status: data only, 1 dataset cited

[24174] doi:10.1016/j.nicl.2024.103678 [paper, repository]

Network connectivity underlying information processing speed in children: Application of a pediatric brain tumor survivor injury model.

Journal: NeuroImage. Clinical

Authors' code: MabbottLab/MEGneto (GPL-3.0)

Status: code verified, 396 files readable, 10 matches

[24175] doi:10.1038/s41398-024-03097-2 [paper, repository]

Magnitude and kinetics of a set of neuroanatomic volume and thickness together with white matter hyperintensity is definitive of cognitive status and brain age.

Journal: Translational psychiatry

Authors' code: nibr-lab/TP-2024_manuscript-code (no license)

Status: code verified, 9 files readable, 1 match

[24176] doi:10.1038/s41419-024-07096-5 [paper, data]

Altered molecular and cellular mechanisms in KIF5A-associated neurodegenerative or neurodevelopmental disorders.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[24177] doi:10.1038/s41467-024-52289-3 [paper, repository]

Rapid context inference in a thalamocortical model using recurrent neural networks.

Journal: Nature communications

Authors' code: weilongzheng/PFC_MD_Modeling (no license)

Status: code verified, 248 files readable, 6 matches

[24178] doi:10.1038/s41467-024-52371-w [paper, repository]

A hierarchical atlas of the human cerebellum for functional precision mapping.

Journal: Nature communications

Authors' code: DiedrichsenLab/HierarchBayesParcel (MIT), Zenodo 12976154 (CC-BY-4.0), DiedrichsenLab/Functional_Fusion (no license), DiedrichsenLab/ProbabilisticParcellation (no license), hierarchbayesparcel.readthedocs.io (no license), DiedrichsenLab/cortico_cereb_connectivity (MIT)

Status: code verified, 188 files readable, 7 matches

[24179] doi:10.1038/s41467-024-52463-7 [paper, repository]

A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders.

Journal: Nature communications

Authors' code: lmcinnes/umap (BSD-3-Clause), ENCODE-DCC/atac-seq-pipeline (MIT), broadinstitute/gatk-sv (BSD-3-Clause), hail-is/hail (MIT), arthurlee617/noncoding-mendel (MIT), Zenodo 12983810 (CC-BY-4.0)

Status: code verified, 2,254 files readable, 24 matches

[24180] doi:10.1038/s41467-024-52496-y [paper, data]

Molecular switching by proton-coupled electron transport drives giant negative differential resistance.

Journal: Nature communications

Status: data only, 1 dataset cited

[24181] doi:10.1038/s41467-024-52559-0 [paper, repository]

Causal involvement of dorsomedial prefrontal cortex in learning the predictability of observable actions.

Journal: Nature communications

Authors' code: OSF frua8 (no license)

Status: code verified, 1 file readable

[24182] doi:10.1038/s41467-024-52575-0 [paper, repository]

Spatial organization of adenylyl cyclase and its impact on dopamine signaling in neurons.

Journal: Nature communications

Authors' code: learipoll/Ripoll-et-al-2024 (no license), Zenodo 13327675 (CC-BY-4.0), Zenodo 13327676 (CC-BY-4.0)

Status: code verified, 6 files readable, 2 matches

[24183] doi:10.1038/s41467-024-52664-0 [paper, repository]

Beta-frequency sensory stimulation enhances gait rhythmicity through strengthened coupling between striatal networks and stepping movement.

Journal: Nature communications

Authors' code: HanLabBU/Sridhar-Sensory-Modulation-Striatum (MIT), Zenodo 13567696 (CC-BY-4.0)

Status: code verified, 6 files readable

[24184] doi:10.1038/s41467-024-52756-x [paper, repository]

Massive multiplexing of spatially resolved single neuron projections with axonal BARseq.

Journal: Nature communications

Authors' code: ZadorLaboratory/axonalBARseq (no license)

Status: code verified, 13 files readable, 32 matches

[24185] doi:10.1038/s41592-024-02440-1 [paper, repository]

Tracking neurons across days with high-density probes.

Journal: Nature methods

Authors' code: Julie-Fabre/bombcell (GPL-3.0), figshare 24305758 (CC-BY-4.0), EnnyvanBeest/UnitMatch (CC-BY-NC-SA-4.0), Zenodo 12734237 (CC-BY-4.0), Zenodo 8172822 (no license)

Status: code verified, 643 files readable, 6 matches

[24186] doi:10.1038/s41593-024-01770-9 [paper, repository]

Dopamine-mediated formation of a memory module in the nucleus accumbens for goal-directed navigation.

Journal: Nature neuroscience

Authors' code: fitzlab/CellMagicWand (MIT), KanghoonJ/Jung_NatNeuro_2024 (no license)

Status: code verified, 52 files readable, 4 matches

[24187] doi:10.1038/s41597-024-03863-3 [paper, repository]

Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space.

Journal: Scientific data

Authors' code: ingvildeb/basal_ganglia_project (GPL-3.0)

Status: code verified, 4 files readable

[24188] doi:10.1038/s41598-024-72901-2 [paper]

Elevated α-1,2-mannosidase MAN1C1 in glioma stem cells and its implications for immunological changes and prognosis in glioma patients.

Journal: Scientific reports

Status: data only

[24189] doi:10.1038/s41598-024-73428-2 [paper, repository]

Length-scale study in deep learning prediction for non-small cell lung cancer brain metastasis.

Journal: Scientific reports

Authors' code: hwzhou2020/NSCLC_ResNet (CC0-1.0), hwzhou2020/NSCLC_length_scale (no license)

Status: code verified, 8 files readable, 2 matches

[24190] doi:10.1038/s41598-024-73438-0 [paper, data]

Movement synchrony among dance performers predicts brain synchrony among dance spectators.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24191] doi:10.1038/s41598-024-73483-9 [paper, data]

Activation of NPY2R-expressing amygdala neurons inhibits itch behavior in mice without lateralization.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24192] doi:10.1038/s41598-024-73577-4 [paper]

Infrared neuroglial modulation of spinal locomotor networks.

Journal: Scientific reports

Status: code on request

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