Every paper, by date: page 110

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 110 of 200: 18 September 2024 to 10 September 2024.

Wednesday, 18 September 2024 (38 papers, 3 on this page)

[24417] doi:10.3390/brainsci14090931 [paper, data]

Real-Time fMRI Neurofeedback Training of Selective Attention in Older Adults.

Journal: Brain sciences

Status: data only, 1 dataset cited

[24418] doi:10.3390/jimaging10090232 [paper, data]

Enhancing Deep Learning Model Explainability in Brain Tumor Datasets Using Post-Heuristic Approaches.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[24419] doi:10.7554/elife.88412 [paper, data]

Ca²⁺ channel and active zone protein abundance intersects with input-specific synapse organization to shape functional synaptic diversity.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 17 September 2024 (33 papers)

[24420] doi:10.1007/s10802-024-01227-4 [paper]

Here Comes Revenge: Peer Victimization Relates to Neural and Behavioral Responses to Social Exclusion.

Journal: Research on child and adolescent psychopathology

Status: code on request

[24421] doi:10.1007/s10827-024-00881-3 [paper, repository]

Formation and retrieval of cell assemblies in a biologically realistic spiking neural network model of area CA3 in the mouse hippocampus.

Journal: Journal of computational neuroscience

Authors' code: jkopsick/cell_assembly_formation_retrieval (no license)

Status: code verified, 29 files readable, 10 matches

[24422] doi:10.1016/j.cell.2024.08.033 [paper, repository]

Fine-grained descending control of steering in walking Drosophila.

Journal: Cell

Authors' code: kristinbranson/APT (GPL-3.0), Zenodo 12775493 (GPL-3.0)

Status: code verified, 2,581 files readable, 20 matches

[24423] doi:10.1016/j.jcmgh.2024.101405 [paper, data]

Interindividual Variation in Gut Nitrergic Neuron Density Is Regulated By GDNF Levels and ETV1.

Journal: Cellular and molecular gastroenterology and hepatology

Status: data only, 1 dataset cited

[24424] doi:10.1016/j.jneumeth.2024.110279 [paper, repository]

Optimizing magnetometers arrays and analysis pipelines for multivariate pattern analysis.

Journal: Journal of neuroscience methods

Authors' code: Y-Bezs/cross-modal-project (no license)

Status: code verified, 81 files readable, 5 matches

[24425] doi:10.1021/acs.est.4c04207 [paper, data]

Impacts on Atlantic Killifish from Neurotoxicants: Genes, Behavior, and Population-Relevant Outcomes.

Journal: Environmental science & technology

Status: data only, 1 dataset cited

[24426] doi:10.1038/s41380-024-02754-8 [paper, repository]

Impaired emotion recognition in Cntnap2-deficient mice is associated with hyper-synchronous prefrontal cortex neuronal activity.

Journal: Molecular psychiatry

Authors' code: Zenodo 12954413 (CC-BY-4.0)

Status: empty repository

[24427] doi:10.1038/s41398-024-03088-3 [paper, repository]

Endogenous mu-opioid modulation of social connection in humans: a systematic review and meta-analysis.

Journal: Translational psychiatry

Authors' code: OSF x5wmq (no license), OSF 5f6ej (no license)

Status: code verified, 4 files readable, 6 matches

[24428] doi:10.1038/s41467-024-52311-8 [paper, repository]

Dopamine neurons encode trial-by-trial subjective reward value in an auction-like task.

Journal: Nature communications

Authors' code: figshare 25734288 (CC-BY-4.0)

Status: code verified

[24429] doi:10.1038/s41467-024-52365-8 [paper, data]

Endolysosomal dysfunction in radial glia progenitor cells leads to defective cerebral angiogenesis and compromised blood-brain barrier integrity.

Journal: Nature communications

Status: data only, 1 dataset cited

[24430] doi:10.1038/s41467-024-52383-6 [paper, repository]

Auditory areas are recruited for naturalistic visual meaning in early deaf people.

Journal: Nature communications

Authors' code: naturalistic-data-analysis (no license)

Status: code verified

[24431] doi:10.1038/s41467-024-52414-2 [paper, repository]

Longitudinal deep neural networks for assessing metastatic brain cancer on a large open benchmark.

Journal: Nature communications

Authors' code: nyumets/nyumets (AGPL-3.0)

Status: code verified, 51 files readable, 8 matches

[24432] doi:10.1038/s41467-024-52479-z [paper, repository]

Frontoparietal network topology as a neural marker of musical perceptual abilities.

Journal: Nature communications

Authors' code: MassimoLumaca/neuroMET (no license), MassimoLumaca/neuroARC (no license)

Status: code verified, 33 files readable, 15 matches

[24433] doi:10.1038/s41598-024-68024-3 [paper, repository]

A spiking neuron model of moral judgment in trolley dilemmas.

Journal: Scientific reports

Authors' code: Roothalla/Nengo-Trolley (no license)

Status: code verified, 1 file readable, 3 matches

[24434] doi:10.1038/s41598-024-72342-x [paper, data]

Evaluating segment anything model (SAM) on MRI scans of brain tumors.

Journal: Scientific reports

Status: data only, 2 datasets cited

[24435] doi:10.1038/s41598-024-72376-1 [paper]

Machine learning based classification of presence utilizing psychophysiological signals in immersive virtual environments.

Journal: Scientific reports

Status: code on request

[24436] doi:10.1038/s42003-024-06835-w [paper, data]

Multimodal Hox5 activity generates motor neuron diversity.

Journal: Communications biology

Status: code on request, 1 dataset cited

[24437] doi:10.1038/s42003-024-06876-1 [paper, repository]

Identifying individual brain development using multimodality brain network.

Journal: Communications biology

Authors' code: thomaskoenig.ch/index.php/software (no license), fil.ion.ucl.ac.uk/spm (no license), nitrc.org/projects/conn (no license)

Status: code verified

[24438] doi:10.1073/pnas.2320611121 [paper, data]

Glial <i>swip-10</i> controls systemic mitochondrial function, oxidative stress, and neuronal viability via copper ion homeostasis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24439] doi:10.1088/1741-2552/ad731f [paper, repository]

Nonlinear model predictive control of a conductance-based neuron model via data-driven forecasting.

Journal: Journal of neural engineering

Authors' code: melizalab/mpc-hh (no license)

Status: code verified, 28 files readable, 6 matches

[24440] doi:10.1093/braincomms/fcae318 [paper, repository]

Children born very preterm experience altered cortical expansion over the first decade of life.

Journal: Brain communications

Authors' code: BioMedIA/MIRTK (Apache-2.0)

Status: code verified, 708 files readable, 3 matches

[24441] doi:10.1117/1.jbo.29.9.096002 [paper, data]

PoLambRimetry: a multispectral polarimetric atlas of lamb brain.

Journal: Journal of biomedical optics

Status: data only, 1 dataset cited

[24442] doi:10.1117/1.nph.11.s1.s11515 [paper]

Multifocal microscopy for functional imaging of neural systems.

Journal: Neurophotonics

Status: code on request

[24443] doi:10.1186/s12929-024-01083-w [paper, data]

CCL5 is essential for axonogenesis and neuronal restoration after brain injury.

Journal: Journal of biomedical science

Status: data only, 7 datasets cited

[24444] doi:10.1371/journal.pone.0308506 [paper, data]

Optimization of stimulus properties for SSVEP-based BMI system with a heads-up display to control in-vehicle features.

Journal: PloS one

Status: data only, 1 dataset cited

[24445] doi:10.1371/journal.pone.0308573 [paper, data]

Region of interest determination algorithm of lensless calcium imaging datasets.

Journal: PloS one

Status: data only, 1 dataset cited

[24446] doi:10.3389/fcell.2024.1379984 [paper, data]

An interpretable deep learning framework identifies proteomic drivers of Alzheimer's disease.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[24447] doi:10.3389/fimmu.2024.1475235 [paper, repository]

From single-cell to spatial transcriptomics: decoding the glioma stem cell niche and its clinical implications.

Journal: Frontiers in immunology

Authors' code: broadinstitute/inferCNV (other), caolab2024/cancer_stem_cells (no license)

Status: code verified, 82 files readable, 4 matches

[24448] doi:10.3389/fnbeh.2024.1418577 [paper, data]

Adult auditory brain responses to nestling begging calls in seasonal songbirds: an fMRI study in non-parenting male and female starlings (<i>Sturnus vulgaris</i>).

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[24449] doi:10.3389/fpsyt.2024.1429437 [paper, data]

Analyses of single-cell and bulk RNA sequencing combined with machine learning reveal the expression patterns of disrupted mitophagy in schizophrenia.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[24450] doi:10.7554/elife.88673 [paper, repository]

Vglut2-based glutamatergic signaling in central noradrenergic neurons is dispensable for normal breathing and chemosensory reflexes.

Journal: eLife

Authors' code: MolecularNeurobiology/Breathe_Easy (GPL-3.0)

Status: code verified, 73 files readable, 5 matches

[24451] doi:10.7554/elife.94349 [paper, data]

Cell-type-specific origins of locomotor rhythmicity at different speeds in larval zebrafish.

Journal: eLife

Status: data only, 1 dataset cited

[24452] doi:10.7554/elife.98834 [paper, data]

Bidirectional dysregulation of synaptic glutamate signaling after transient metabolic failure.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 16 September 2024 (26 papers)

[24453] doi:10.1002/advs.202403105 [paper]

Epigenetic Dynamics in Reprogramming to Dopaminergic Neurons for Parkinson's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[24454] doi:10.1007/s00401-024-02794-y [paper, repository]

Dysregulated FOXO1 activity drives skeletal muscle intrinsic dysfunction in amyotrophic lateral sclerosis.

Journal: Acta neuropathologica

Authors' code: biobancovasco.org (no license)

Status: code verified

[24455] doi:10.1016/j.bpsgos.2024.100393 [paper, data]

The Balance N1 Is Larger in Children With Anxiety and Associated With the Error-Related Negativity.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[24456] doi:10.1016/j.celrep.2024.114763 [paper, repository]

Coordinated changes in a cortical circuit sculpt effects of novelty on neural dynamics.

Journal: Cell reports

Authors' code: AllenInstitute/visual_behavior_ssn_modeling (BSD-3-Clause), Zenodo 13324231 (CC-BY-4.0)

Status: code verified, 18 files readable, 2 matches

[24457] doi:10.1016/j.isci.2024.110976 [paper, repository]

Identification and validation of a novel gene <i>ARVCF</i> associated with alcohol dependence among Chinese population.

Journal: iScience

Authors' code: BGI-shenzhen/LDBlockShow (MIT)

Status: code verified, 38 files readable, 1 match

[24458] doi:10.1016/j.isci.2024.110980 [paper]

Rebalance of mitophagy by inhibiting LRRK2 improves colon alterations in an MPTP <i>in vivo</i> model.

Journal: iScience

Status: code on request

[24459] doi:10.1016/j.omtn.2024.102340 [paper]

l-Type amino acid transporter 1-targeting nanoparticles for antisense oligonucleotide delivery to the CNS.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[24460] doi:10.1038/s41398-024-03095-4 [paper, repository]

Blood metabolites, neurocognition and psychiatric disorders: a Mendelian randomization analysis to investigate causal pathways.

Journal: Translational psychiatry

Authors' code: bulik/ldsc (GPL-3.0), WSpiller/RadialMR (GPL-3.0), lukejoconnor/LCV (no license)

Status: code verified, 50 files readable, 8 matches

[24461] doi:10.1038/s41467-024-51960-z [paper, data]

Neurotransmitter recognition by human vesicular monoamine transporter 2.

Journal: Nature communications

Status: data only, 3 datasets cited

[24462] doi:10.1038/s41467-024-52233-5 [paper]

Serotonin deficiency from constitutive SKN-1 activation drives pathogen apathy.

Journal: Nature communications

Status: data only

[24463] doi:10.1038/s41467-024-52397-0 [paper, repository]

In vivo imaging of vagal-induced myenteric plexus responses in gastrointestinal tract with an optical window.

Journal: Nature communications

Authors' code: scidb.cn/s/7jjni2 (no license)

Status: code verified

[24464] doi:10.1038/s41593-024-01741-0 [paper, data]

Neuroanatomical changes observed over the course of a human pregnancy.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[24465] doi:10.1038/s41593-024-01755-8 [paper, repository]

Tonic and burst-like locus coeruleus stimulation distinctly shift network activity across the cortical hierarchy.

Journal: Nature neuroscience

Authors' code: bmunn/IntegrationLCStim (no license)

Status: code verified, 4 files readable, 3 matches

[24466] doi:10.1038/s41598-024-67951-5 [paper, repository]

In silico evaluation of cell therapy in acute versus chronic infarction: role of automaticity, heterogeneity and Purkinje in human.

Journal: Scientific reports

Authors' code: LLRiebel/MonoAlg3D_C-2023 (MIT)

Status: code verified, 558 files readable, 2 matches

[24467] doi:10.1038/s41598-024-70524-1 [paper, repository]

Sensory adaptation in the barrel cortex during active sensation in the behaving mouse.

Journal: Scientific reports

Authors' code: AndreaColinsR/Sensory_Adaptation (MIT)

Status: code verified, 26 files readable, 3 matches

[24468] doi:10.1038/s41598-024-72358-3 [paper, data]

Neural signatures of motor imagery for a supernumerary thumb in VR: an EEG analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24469] doi:10.1038/s44319-024-00258-8 [paper]

SOX10 mediates glioblastoma cell-state plasticity.

Journal: EMBO reports

Status: data only

[24470] doi:10.1073/pnas.2404781121 [paper, data]

The telencephalon is a neuronal substrate for systemic inflammatory responses in teleosts via polyamine metabolism.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24471] doi:10.1098/rstb.2023.0414 [paper, repository]

Travelling beyond time: shared brain system for self-projection in the temporal, political and moral domains.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: adelavega/fpcn_fractionation (no license)

Status: code verified, 7 files readable

[24472] doi:10.1111/acer.15440 [paper]

Alcohol and fear conditioning produce strain-specific changes in the dorsal hippocampal transcriptome of adolescent C57BL/6J and DBA/2J mice.

Journal: Alcohol, clinical & experimental research

Status: data only

[24473] doi:10.1128/mra.00493-24 [paper, data]

Whole-genome sequencing and analysis of <i>Streptococcus iniae</i> strain isolated from the brain of tilapia (<i>Oreochromis</i> sp.).

Journal: Microbiology resource announcements

Status: data only, 1 dataset cited

[24474] doi:10.1371/journal.pone.0310165 [paper, repository]

Persistent homology reveals robustness loss in inhaled substance abuse rs-fMRI networks.

Journal: PloS one

Authors' code: MartinMij/TDA-of-networks (no license)

Status: code verified, 5 files readable

[24475] doi:10.1371/journal.ppat.1012168 [paper, data]

Microglia and macrophages alterations in the CNS during acute SIV infection: A single-cell analysis in rhesus macaques.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[24476] doi:10.3389/fgene.2024.1452339 [paper, repository]

Graph neural pre-training based drug-target affinity prediction.

Journal: Frontiers in genetics

Authors' code: yeqing0713/GNPDTA (no license)

Status: code verified, 14 files readable

[24477] doi:10.3389/fnagi.2024.1430408 [paper, repository]

Subthreshold amyloid deposition, cerebral small vessel disease, and functional brain network disruption in delayed cognitive decline after stroke.

Journal: Frontiers in aging neuroscience

Authors' code: cocoanlab/cocoancore (GPL-3.0)

Status: code verified, 127 files readable, 2 matches

[24478] doi:10.3758/s13428-024-02508-y [paper, repository]

A standardized framework to test event-based experiments.

Journal: Behavior research methods

Authors' code: Cogitate-consortium/ExperimentTestingFramework (GPL-3.0)

Status: code verified, 24 files readable, 1 match

Sunday, 15 September 2024 (2 papers)

[24479] doi:10.1016/j.crneur.2024.100139 [paper]

Modeling for neurosurgical laser interstitial thermal therapy with and without intracranial recording electrodes.

Journal: Current research in neurobiology

Status: code on request

[24480] doi:10.3390/bioengineering11090926 [paper, data]

Efficient Multi-View Graph Convolutional Network with Self-Attention for Multi-Class Motor Imagery Decoding.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 14 September 2024 (13 papers)

[24481] doi:10.1007/s00018-024-05436-4 [paper]

Protein tyrosine phosphatase receptor type O serves as a key regulator of insulin resistance-induced α-synuclein aggregation in Parkinson's disease.

Journal: Cellular and molecular life sciences : CMLS

Status: code on request

[24482] doi:10.1007/s11357-024-01342-6 [paper]

Multiscale neural dynamics in sleep transition volatility across age scales: a multimodal EEG-EMG-EOG analysis of temazepam effects.

Journal: GeroScience

Status: code on request

[24483] doi:10.1007/s12311-024-01741-7 [paper]

Investigating Cerebello-Frontal Circuits Associated with Emotional Prosody: A Double-Blind tDCS and fNIRS study.

Journal: Cerebellum (London, England)

Status: code on request

[24484] doi:10.1016/j.celrep.2024.114718 [paper, repository]

Areal specializations in the morpho-electric and transcriptomic properties of primate layer 5 extratelencephalic projection neurons.

Journal: Cell reports

Authors' code: AllenInstitute/neuron_morphology (BSD-2-Clause)

Status: code verified, 166 files readable, 1 match

[24485] doi:10.1016/j.isci.2024.110937 [paper]

C9orf72 poly-PR forms anisotropic condensates causative of nuclear TDP-43 pathology.

Journal: iScience

Status: code on request

[24486] doi:10.1016/j.xpro.2024.103318 [paper, data]

Protocol for whole-mount immunostaining of brains of the eastern subterranean termite, Reticulitermes flavipes.

Journal: STAR protocols

Status: data only, 1 dataset cited

[24487] doi:10.1038/s41398-024-02972-2 [paper, repository]

DeepASD: a deep adversarial-regularized graph learning method for ASD diagnosis with multimodal data.

Journal: Translational psychiatry

Authors' code: codeocean:6043886 (no license)

Status: code found, still to be checked

[24488] doi:10.1038/s41467-024-51861-1 [paper, repository]

Gain control of sensory input across polysynaptic circuitries in mouse visual cortex by a single G protein-coupled receptor type (5-HT&lt;sub&gt;2A&lt;/sub&gt;).

Journal: Nature communications

Authors' code: sencheng/Serotonergic-Modulation (GPL-3.0), Zenodo 12691563 (CC-BY-4.0)

Status: code verified, 98 files readable, 2 matches

[24489] doi:10.1038/s41467-024-52443-x [paper, repository]

Conserved transcriptional regulation by BRN1 and BRN2 in neocortical progenitors drives mammalian neural specification and neocortical expansion.

Journal: Nature communications

Authors' code: Zenodo 12582808 (CC-BY-4.0), Zenodo 12582809 (CC-BY-4.0), sbarao13/neocortical-size-and-microcephaly (no license)

Status: code verified, 39 files readable, 7 matches

[24490] doi:10.1038/s41598-024-69973-5 [paper, data]

The neuroscience of itch in relation to transdiagnostic psychological approaches.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24491] doi:10.1038/s42003-024-06780-8 [paper, repository]

Dynamic layer-specific processing in the prefrontal cortex during working memory.

Journal: Communications biology

Authors' code: OSF dtkne (no license)

Status: code verified, 41 files readable

[24492] doi:10.1186/s12951-024-02773-1 [paper, data]

Umbilical cord blood-derived exosomes attenuate dopaminergic neuron damage of Parkinson's disease mouse model.

Journal: Journal of nanobiotechnology

Status: data only, 1 dataset cited

[24493] doi:10.3390/brainsci14090921 [paper, repository]

Increased Risk for Clinically Significant Sleep Disturbances in Mild Traumatic Brain Injury: An Approach to Leveraging the Federal Interagency Traumatic Brain Injury Research Database.

Journal: Brain sciences

Authors' code: fitbir.nih.gov (no license)

Status: code verified

Friday, 13 September 2024 (37 papers)

[24494] doi:10.1016/j.cell.2024.08.024 [paper]

Co-opting templated aggregation to degrade pathogenic tau assemblies and improve motor function.

Journal: Cell

Status: code on request

[24495] doi:10.1016/j.celrep.2024.114723 [paper]

Spatiotemporal relationships between neuronal, metabolic, and hemodynamic signals in the awake and anesthetized mouse brain.

Journal: Cell reports

Status: code on request

[24496] doi:10.1016/j.dcn.2024.101448 [paper, data]

A longitudinal study of the relationship between alcohol-related blackouts and attenuated structural brain development.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[24497] doi:10.1016/j.isci.2024.110941 [paper, repository]

Exploring temporal and sex-linked dysregulation in Alzheimer disease phosphoproteome.

Journal: iScience

Authors' code: figshare 23903715 (MIT)

Status: code verified

[24498] doi:10.1016/j.isci.2024.110945 [paper]

Development and validation of a multimodal deep learning framework for vascular cognitive impairment diagnosis.

Journal: iScience

Status: code on request

[24499] doi:10.1016/j.isci.2024.110949 [paper]

A nanowell-based MoS₂ neuroelectrode for high-sensitivity neural recording.

Journal: iScience

Status: code on request

[24500] doi:10.1016/j.isci.2024.110954 [paper, repository]

The prion protein is required for normal responses to light stimuli by photoreceptors and bipolar cells.

Journal: iScience

Authors' code: kb.10xgenomics.com/hc/en-us (no license)

Status: code verified

[24501] doi:10.1016/j.isci.2024.110955 [paper]

T cell death-associated gene 8-mediated distinct signaling pathways modulate the early and late phases of neuropathic pain.

Journal: iScience

Status: code on request

[24502] doi:10.1016/j.omtm.2024.101337 [paper]

Optimal different adeno-associated virus capsid/promoter combinations to target specific cell types in the common marmoset cerebral cortex.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[24503] doi:10.1038/s41380-024-02738-8 [paper, repository]

Spatio-temporal mechanisms of consolidation, recall and reconsolidation in reward-related memory trace.

Journal: Molecular psychiatry

Authors' code: neuro-reward/reward-memory (no license)

Status: code verified, 9 files readable, 2 matches

[24504] doi:10.1038/s41380-024-02749-5 [paper, repository]

Schizophrenia is associated with altered DNA methylation variance.

Journal: Molecular psychiatry

Authors' code: dkiltschewskij/Schizophrenia_DNAm_Variance (no license)

Status: code verified, 7 files readable, 3 matches

[24505] doi:10.1038/s41467-024-52244-2 [paper, data]

A sex-stratified analysis of the genetic architecture of human brain anatomy.

Journal: Nature communications

Status: data only, 2 datasets cited

[24506] doi:10.1038/s41467-024-52294-6 [paper, repository]

Sex differences in neural representations of social and nonsocial reward in the medial prefrontal cortex.

Journal: Nature communications

Authors' code: muruganlab/Isaac_et_al_2024_mPFC_sex_diff (no license)

Status: code verified, 8 files readable, 3 matches

[24507] doi:10.1038/s41467-024-52315-4 [paper, repository]

Distinct codes for environment structure and symmetry in postrhinal and retrosplenial cortices.

Journal: Nature communications

Authors' code: hasselmonians/LaChance_Hasselmo_POR_RSC (no license), Zenodo 13502206 (CC-BY-4.0), taube-lab/POR_GLM (no license), taube-lab/LaChance_Taube_Curr_Biol_2023 (no license), Zenodo 3173242 (other-open)

Status: code verified, 22 files readable, 7 matches

[24508] doi:10.1038/s41467-024-52329-y [paper, data]

Ultrasound frequency-controlled microbubble dynamics in brain vessels regulate the enrichment of inflammatory pathways in the blood-brain barrier.

Journal: Nature communications

Status: data only, 1 dataset cited

[24509] doi:10.1038/s41538-024-00308-4 [paper, repository]

A randomised crossover trial of nitrate and breakfast on prefrontal cognitive and haemodynamic response functions.

Journal: NPJ science of food

Authors' code: huppertt/nirs-toolbox (no license)

Status: code verified, 2,000 files readable, 5 matches

[24510] doi:10.1038/s41592-024-02384-6 [paper, repository]

Serialized on-grid lift-in sectioning for tomography (SOLIST) enables a biopsy at the nanoscale.

Journal: Nature methods

Authors' code: 3P1L/SOLIST_paper (no license)

Status: code verified, 4 files readable

[24511] doi:10.1038/s41597-024-03738-7 [paper, repository]

Unobtrusive measurement of cognitive load and physiological signals in uncontrolled environments.

Journal: Scientific data

Authors' code: HPI-CH/UNIVERSE (no license), Zenodo 5833858 (other-open), hpi-dhc/jointly (MIT)

Status: code verified, 61 files readable, 15 matches

[24512] doi:10.1038/s41598-024-72926-7 [paper, data]

Detection of Alcoholic EEG signal using LASSO regression with metaheuristics algorithms based LSTM and enhanced artificial neural network classification algorithms.

Journal: Scientific reports

Status: data only, 2 datasets cited

[24513] doi:10.1073/pnas.2320177121 [paper, repository]

Hierarchical communities in the larval &lt;i&gt;Drosophila&lt;/i&gt; connectome: Links to cellular annotations and network topology.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 1164194 (CC-BY-4.0), brain-networks/wsbm_sampler (no license), murraylab/brainsmash (GPL-3.0)

Status: code verified, 62 files readable, 2 matches

[24514] doi:10.1080/07853890.2024.2402949 [paper, data]

Transcriptional profile changes caused by noise-induced tinnitus in the cochlear nucleus and inferior colliculus of the rat.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[24515] doi:10.1126/sciadv.adp2840 [paper, repository]

Positronium image of the human brain in vivo.

Journal: Science advances

Authors' code: JPETTomography/Gate (LGPL-3.0)

Status: code verified, 844 files readable, 1 match

[24516] doi:10.1162/imag_a_00287 [paper, repository]

Functional MRI signals exhibit stronger covariation with peripheral autonomic measures as vigilance decreases.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 3a2ut (no license)

Status: code verified, 5 files readable, 6 matches

[24517] doi:10.1162/imag_a_00288 [paper, repository]

ACID: A comprehensive toolbox for image processing and modeling of brain, spinal cord, and ex vivo diffusion MRI data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: quantitative-mri-and-in-vivo-histology/axisymmetric_dki_with_rician_bias_correction_simulation_study (MIT), siawoosh/acid-artefact-correction-in-diffusion-mri (no license), quantitative-mri-and-in-vivo-histology/esmrmb2024 (no license)

Status: code verified, 1,080 files readable, 40 matches

[24518] doi:10.1186/s12883-024-03787-w [paper, repository]

Energy metabolism-related GLUD1 contributes to favorable clinical outcomes of IDH-mutant glioma.

Journal: BMC neurology

Authors' code: cran.r-project.org/package=survival (no license)

Status: code verified

[24519] doi:10.1186/s12967-024-05638-1 [paper, data]

Repeated prefrontal tDCS for improving mental health and cognitive deficits in multiple sclerosis: a randomized, double-blind, parallel-group study.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[24520] doi:10.1186/s40364-024-00636-3 [paper, data]

Single-cell, single-nucleus and xenium-based spatial transcriptomics analyses reveal inflammatory activation and altered cell interactions in the hippocampus in mice with temporal lobe epilepsy.

Journal: Biomarker research

Status: data only, 8 datasets cited

[24521] doi:10.1364/boe.530534 [paper, repository]

TDT-MIL: a framework with a dual-channel spatial positional encoder for weakly-supervised whole slide image classification.

Journal: Biomedical optics express

Authors' code: fy0000/TDT-MIL (no license)

Status: code verified, 7 files readable

[24522] doi:10.1371/journal.pbio.3002782 [paper, repository]

Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank scale.

Journal: PLoS biology

Authors' code: nhunghoang/twas-webapp (MIT)

Status: code verified, 5 files readable

[24523] doi:10.1523/eneuro.0148-24.2024 [paper, repository]

Human Pluripotent Stem Cell-Derived Astrocyte Functionality Compares Favorably with Primary Rat Astrocytes.

Journal: eNeuro

Authors' code: kushnerlab/scRNAseqR (GPL-3.0)

Status: code verified, 26 files readable, 5 matches

[24524] doi:10.3389/fgene.2024.1373447 [paper]

Impact of dietary changes on retinal neuronal plasticity in rodent models of physical and psychological trauma.

Journal: Frontiers in genetics

Status: data only

[24525] doi:10.3389/fnagi.2024.1397696 [paper, data]

EBF1 is a potential biomarker for predicting progression from mild cognitive impairment to Alzheimer's disease: an <i>in silico</i> study.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[24526] doi:10.3389/fninf.2024.1427642 [paper, repository]

Reproducible supervised learning-assisted classification of spontaneous synaptic waveforms with Eventer.

Journal: Frontiers in neuroinformatics

Authors' code: sourceforge.net/eventer (no license), acp29/eventer (GPL-3.0), acp29/Winchester_EVENTER (BSD-3-Clause), gnu-octave/statistics-resampling (GPL-3.0), Zenodo 3992392 (GPL-3.0), Zenodo 3991676 (GPL-2.0)

Status: code verified, 780 files readable, 15 matches

[24527] doi:10.3389/fpsyt.2024.1448145 [paper, repository]

Individualized multi-modal MRI biomarkers predict 1-year clinical outcome in first-episode drug-naïve schizophrenia patients.

Journal: Frontiers in psychiatry

Authors' code: ThomasYeoLab/CBIG (MIT), salan668/FAE (Apache-2.0)

Status: code verified, 2,095 files readable, 9 matches

[24528] doi:10.3390/bioengineering11090918 [paper, repository]

An Objective Injury Threshold for the Maximum Principal Strain Criterion for Brain Tissue in the Finite Element Head Model and Its Application.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: Zhang-Yu-Ting/Data-Driven-Brain-Injury-Threshold (MIT)

Status: code verified, 13 files readable

[24529] doi:10.3390/ijms25189883 [paper, repository]

RNA Sequencing Reveals a Strong Predominance of <i>THRA</i> Splicing Isoform 2 in the Developing and Adult Human Brain.

Journal: International journal of molecular sciences

Authors' code: eugeniograceffo/Graceffo_et_al_2024_IJMS (CC0-1.0)

Status: code verified, 8 files readable, 14 matches

[24530] doi:10.7554/elife.91636 [paper, repository]

Language experience shapes predictive coding of rhythmic sound sequences.

Journal: eLife

Authors' code: OSF 6jep8 (no license)

Status: code verified, 6 files readable, 4 matches

Thursday, 12 September 2024 (29 papers)

[24531] doi:10.1002/adhm.202402132 [paper, repository]

Dye-Based Fluorescent Organic Nanoparticles, New Promising Tools for Optogenetics.

Journal: Advanced healthcare materials

Authors' code: LAGONteam/PyTwoPhotonExcitedFluorescence (no license)

Status: code verified, 26 files readable, 1 match

[24532] doi:10.1002/advs.202406364 [paper, repository]

ImputeHiFI: An Imputation Method for Multiplexed DNA FISH Data by Utilizing Single-Cell Hi-C and RNA FISH Data.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 5507507 (other-open), Zenodo 4299227 (other-open), zhanglabtools/ImputeHiFI (MIT), zchiang/in_situ_genome_sequencing_processing (MIT), caigroup/dna-seqfish-plus-tissue (no license)

Status: code verified, 901 files readable, 4 matches

[24533] doi:10.1007/s10877-024-01214-6 [paper]

Relationships between the qNOX, qCON, burst suppression ratio, and muscle activity index of the CONOX monitor during total intravenous anesthesia: a pilot study.

Journal: Journal of clinical monitoring and computing

Status: code on request

[24534] doi:10.1007/s11065-024-09647-1 [paper, repository]

Not All Stroop-Type Tasks Are Alike: Assessing the Impact of Stimulus Material, Task Design, and Cognitive Demand via Meta-analyses Across Neuroimaging Studies.

Journal: Neuropsychology review

Authors' code: OSF dt3kj (no license), anima.fz-juelich.de (no license)

Status: code verified, 10 files readable, 1 match

[24535] doi:10.1016/j.cub.2024.08.025 [paper, repository]

Serotonergic modulation of swallowing in a complete fly vagus nerve connectome.

Journal: Current biology : CB

Authors' code: Pankratz-Lab/Spike2-Scripts (GPL-3.0)

Status: empty repository, 2 files readable

[24536] doi:10.1016/j.heliyon.2024.e37760 [paper, repository]

Dissecting the infodemic: An in-depth analysis of COVID-19 misinformation detection on X (formerly Twitter) utilizing machine learning and deep learning techniques.

Journal: Heliyon

Authors' code: asmaulhussna/covid-19_dataset (no license)

Status: empty repository, 1 file readable

[24537] doi:10.1016/j.omtn.2024.102332 [paper]

Engineered AAV capsid transport mutants overcome transduction deficiencies in the aged CNS.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[24538] doi:10.1016/j.xpro.2024.103305 [paper, repository]

STARDUST: A pipeline for the unbiased analysis of astrocyte regional calcium dynamics.

Journal: STAR protocols

Authors' code: papouinlab/STARDUST (GPL-3.0)

Status: code verified, 8 files readable, 40 matches

[24539] doi:10.1038/s41380-024-02724-0 [paper, repository]

Molecular and micro-architectural mapping of gray matter alterations in psychosis.

Journal: Molecular psychiatry

Authors' code: brainchart/Lifespan (no license), netneurolab/neuromaps (CC-BY-NC-SA-4.0), netneurolab/netneurotools (BSD-3-Clause), RafaelRomeroGarcia/NeurobiologyCentilesPsychosis (GPL-3.0), RafaelRomeroGarcia/cca_pls_toolkit (GPL-3.0)

Status: code verified, 290 files readable, 14 matches

[24540] doi:10.1038/s41467-024-52075-1 [paper, data]

Phosphorylation of tau at a single residue inhibits binding to the E3 ubiquitin ligase, CHIP.

Journal: Nature communications

Status: data only, 1 dataset cited

[24541] doi:10.1038/s41467-024-52132-9 [paper, repository]

An emergent attractor network in a passive resistive switching circuit.

Journal: Nature communications

Authors' code: Zenodo 13335508 (CC-BY-4.0)

Status: code verified

[24542] doi:10.1038/s41467-024-52366-7 [paper, repository]

Regional patterns of human cortex development correlate with underlying neurobiology.

Journal: Nature communications

Authors' code: LeonDLotter/CTdev (CC-BY-NC-SA-4.0), Zenodo 7902901 (other-open), Zenodo 7901282 (other-open), Zenodo 6884932 (other-nc)

Status: code verified, 51 files readable, 14 matches

[24543] doi:10.1038/s41531-024-00773-4 [paper, repository]

Clinico-physiological correlates of Parkinson's disease from multi-resolution basal ganglia recordings.

Journal: NPJ Parkinson's disease

Authors' code: Toronto-TNBS/spooky-spikes (no license)

Status: code verified, 8 files readable, 3 matches

[24544] doi:10.1038/s41598-024-72367-2 [paper, repository]

DAMM for the detection and tracking of multiple animals within complex social and environmental settings.

Journal: Scientific reports

Authors' code: backprop64/DAMM (no license), web.eecs.umich.edu/gkaul/damm (no license)

Status: code verified, 11 files readable, 1 match

[24545] doi:10.1038/s41598-024-72649-9 [paper, repository]

Consensus of algorithms for lesion segmentation in brain MRI studies of multiple sclerosis.

Journal: Scientific reports

Authors' code: sergivalverde/nicMSlesions (GPL-3.0), Zenodo 7626121 (CC-BY-4.0), muschellij2/open_ms_data (no license)

Status: code verified, 61 files readable, 1 match

[24546] doi:10.1038/s42003-024-06834-x [paper, repository]

Opposing neural processing modes alternate rhythmically during sustained auditory attention.

Journal: Communications biology

Authors' code: OSF 64ycj (no license)

Status: code verified, 9 files readable, 3 matches

[24547] doi:10.1038/s44172-024-00270-9 [paper, repository]

Multi-view neural 3D reconstruction of micro- and nanostructures with atomic force microscopy.

Journal: Communications engineering

Authors' code: zju3dv/MVN-AFM (other)

Status: code verified, 35 files readable, 2 matches

[24548] doi:10.1093/braincomms/fcae310 [paper, data]

Investigating recovery after a spontaneous intracerebral haemorrhage in zebrafish larvae.

Journal: Brain communications

Status: data only, 1 dataset cited

[24549] doi:10.1093/braincomms/fcae313 [paper, repository]

Metric comparison of connectome-based lesion-symptom mapping in post-stroke aphasia.

Journal: Brain communications

Authors' code: OSF t2r9s (no license)

Status: code verified, 7 files readable

[24550] doi:10.1186/s13244-024-01803-8 [paper, data]

Focal cortical dysplasia lesion segmentation using multiscale transformer.

Journal: Insights into imaging

Status: data only, 1 dataset cited

[24551] doi:10.1371/journal.pone.0310312 [paper, repository]

White matter disconnection impacts proprioception post-stroke.

Journal: PloS one

Authors' code: Zenodo 13137294 (CC-BY-4.0), mattchilvers/whitematterdisconnection_plos (no license)

Status: code verified, 28 files readable, 8 matches

[24552] doi:10.1523/eneuro.0243-24.2024 [paper, data]

Presaccadic Attention Enhances and Reshapes the Contrast Sensitivity Function Differentially around the Visual Field.

Journal: eNeuro

Status: data only, 1 dataset cited

[24553] doi:10.1523/eneuro.0471-23.2024 [paper, repository]

Prestimulus Alpha Phase Modulates Visual Temporal Integration.

Journal: eNeuro

Authors' code: OSF ah3gf (no license)

Status: code verified, 14 files readable, 15 matches

[24554] doi:10.26508/lsa.202302041 [paper, data]

Crosstalk between bone metastatic cancer cells and sensory nerves in bone metastatic progression.

Journal: Life science alliance

Status: data only, 1 dataset cited

[24555] doi:10.3389/fncel.2024.1429329 [paper, repository]

Investigating the interplay between segregation and integration in developing cortical assemblies.

Journal: Frontiers in cellular neuroscience

Authors' code: Zenodo 10998780 (CC-BY-4.0), screenneuropharm/integrationsegregation (MIT)

Status: code verified, 31 files readable, 4 matches

[24556] doi:10.3390/cimb46090600 [paper, data]

Disulfidptosis: A New Target for Parkinson's Disease and Cancer.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[24557] doi:10.3390/ijms25189854 [paper, data]

Cell-Type-Specific Expression of Leptin Receptors in the Mouse Forebrain.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[24558] doi:10.34133/cbsystems.0140 [paper, repository]

Modeling Grid Cell Distortions with a Grid Cell Calibration Mechanism.

Journal: Cyborg and bionic systems (Washington, D.C.)

Authors' code: strammermax27/modeling_grid_distortions (no license)

Status: empty repository, 1 file readable

[24559] doi:10.3758/s13415-024-01211-x [paper, data]

Deepening the decisional processes under value-based conditions in patients affected by Parkinson's disease: A comparative study.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

Wednesday, 11 September 2024 (47 papers)

[24560] doi:10.1002/alz.14187 [paper, repository]

Cognitive resilience to Alzheimer's disease characterized by cell-type abundance.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: broadinstitute/gtex-pipeline (BSD-3-Clause)

Status: code verified, 39 files readable

[24561] doi:10.1007/s00429-024-02854-9 [paper, data]

Quantitative metrics commonly derived from diffusion tractography covary with streamline length: a characterization and method of adjustment.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[24562] doi:10.1007/s13246-024-01484-z [paper]

Functional conductivity imaging: quantitative mapping of brain activity.

Journal: Physical and engineering sciences in medicine

Status: code on request

[24563] doi:10.1016/j.heliyon.2024.e37743 [paper, repository]

Computational imaging for rapid detection of grade-I cerebral small vessel disease (cSVD).

Journal: Heliyon

Authors' code: shahidzikria/Computational-imaging-for-rapid-detection-of-grade-I-cerebral-small-vessel-disease-cSVD (MIT)

Status: empty repository, 2 files readable

[24564] doi:10.1016/j.heliyon.2024.e37807 [paper]

Developing diagnostic biomarkers for Alzheimer's disease based on histone lactylation-related gene.

Journal: Heliyon

Status: data only

[24565] doi:10.1016/j.heliyon.2024.e37831 [paper, repository]

Dopamine dynamics in nucleus accumbens across reward-based learning of goal-directed whisker-to-lick sensorimotor transformations in mice.

Journal: Heliyon

Authors' code: Zenodo 13306827 (CC-BY-4.0)

Status: code verified

[24566] doi:10.1016/j.isci.2024.110917 [paper, repository]

Olanzapine enhances early brain maturation through activation of the NODAL/FOXH1 axis.

Journal: iScience

Authors' code: db.cngb.org (no license)

Status: code verified

[24567] doi:10.1016/j.isci.2024.110932 [paper]

Re-programming by a six-factor-secretome in the patient tumor ecosystem during nutrient stress and drug response.

Journal: iScience

Status: code on request

[24568] doi:10.1021/acsphotonics.4c00111 [paper, data]

Deep Mouse Brain Two-Photon Near-Infrared Fluorescence Imaging Using a Superconducting Nanowire Single-Photon Detector Array.

Journal: ACS photonics

Status: data only, 1 dataset cited

[24569] doi:10.1038/s41467-024-51390-x [paper, repository]

Sub-threshold neuronal activity and the dynamical regime of cerebral cortex.

Journal: Nature communications

Authors' code: orena1/sub-threshold-statistics (no license)

Status: code verified, 61 files readable, 5 matches

[24570] doi:10.1038/s41467-024-51477-5 [paper, repository]

Scalable spatiotemporal prediction with Bayesian neural fields.

Journal: Nature communications

Authors' code: google/bayesnf (Apache-2.0), andrewzm/STRbook (no license), Zenodo 4531304 (CC-BY-4.0)

Status: code verified, 56 files readable, 8 matches

[24571] doi:10.1038/s41467-024-52059-1 [paper, data]

Hypothalamic SLC7A14 accounts for aging-reduced lipolysis in white adipose tissue of male mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[24572] doi:10.1038/s41467-024-52242-4 [paper, repository]

Prenatal environment is associated with the pace of cortical network development over the first three years of life.

Journal: Nature communications

Authors' code: Zenodo 12785442 (CC-BY-4.0), mychan24/system_matrix_tools (MIT), utooley/Tooley2023_prenatal_env_cortical_network_dev (BSD-3-Clause)

Status: code verified, 35 files readable, 17 matches

[24573] doi:10.1038/s41467-024-52304-7 [paper, repository]

Fixational eye movements enhance the precision of visual information transmitted by the primate retina.

Journal: Nature communications

Authors' code: wueric/wu-nature-comms-2024 (GPL-3.0), figshare 23929941 (GPL 3.0+)

Status: code verified, 180 files readable, 11 matches

[24574] doi:10.1038/s41586-024-07908-w [paper, repository]

Brain-wide dynamics linking sensation to action during decision-making.

Journal: Nature

Authors' code: SainsburyWellcomeCentre/BakingTray (LGPL-3.0), SainsburyWellcomeCentre/StitchIt (LGPL-3.0), stevenjwest/brainregister (GPL-3.0), SainsburyWellcomeCentre/lasagna (GPL-3.0), BaselLaserMouse/Khilkevich_Lohse_2024 (no license)

Status: code verified, 2,018 files readable, 23 matches

[24575] doi:10.1038/s41586-024-07939-3 [paper, repository]

Connectome-constrained networks predict neural activity across the fly visual system.

Journal: Nature

Authors' code: TuragaLab/flyvis (MIT)

Status: code verified, 140 files readable, 10 matches

[24576] doi:10.1038/s41586-024-08024-5 [paper, data]

Heteromeric amyloid filaments of ANXA11 and TDP-43 in FTLD-TDP type C.

Journal: Nature

Status: data only, 2 datasets cited

[24577] doi:10.1038/s41597-024-03745-8 [paper, repository]

Le Petit Prince Hong Kong (LPPHK): Naturalistic fMRI and EEG data from older Cantonese speakers.

Journal: Scientific data

Authors' code: jixing-li/lpp_data (no license)

Status: code verified, 7 files readable

[24578] doi:10.1038/s41598-024-71640-8 [paper]

Deep learning revealed statistics of the MgO particles dissolution rate in a CaO-Al₂O₃-SiO₂-MgO slag.

Journal: Scientific reports

Status: code on request

[24579] doi:10.1038/s42003-024-06808-z [paper, repository]

Double dissociation of visuomotor interaction mediated by visual feedback during continuous de novo motor learning.

Journal: Communications biology

Authors' code: AndyJHKim/GL_sensorimotor (no license)

Status: code verified, 7 files readable, 2 matches

[24580] doi:10.1038/s42003-024-06842-x [paper, repository]

Real-time fMRI neurofeedback modulates induced hallucinations and underlying brain mechanisms.

Journal: Communications biology

Authors' code: gitlab.epfl.ch/dhanis/ph-neurofeedback (no license)

Status: dead link

[24581] doi:10.1093/braincomms/fcae308 [paper, data]

Causal relationships of grey matter structures in multiple sclerosis and neuromyelitis optica spectrum disorder: insights from Mendelian randomization.

Journal: Brain communications

Status: data only, 1 dataset cited

[24582] doi:10.1098/rsob.240036 [paper, data]

Fly Fam161 is an essential centriole and cilium transition zone protein with unique and diverse cell type-specific localizations.

Journal: Open biology

Status: data only, 1 dataset cited

[24583] doi:10.1098/rsos.240765 [paper, data]

Brain shapes of large-bodied, flightless ratites (Aves: Palaeognathae) emerge through distinct developmental allometries.

Journal: Royal Society open science

Status: data only, 3 datasets cited

[24584] doi:10.1126/sciadv.adk3700 [paper, repository]

Modeling Lewy body disease with &lt;i&gt;SNCA&lt;/i&gt; triplication iPSC-derived cortical organoids and identifying therapeutic drugs.

Journal: Science advances

Authors' code: ZhaoNaLab/Modeling-Lewy-Body-Disease- (no license), Zenodo 13144704 (CC-BY-4.0)

Status: code verified, 125 files readable, 12 matches

[24585] doi:10.1126/sciadv.ado8230 [paper, repository]

A computational mechanism of cue-stimulus integration for pain in the brain.

Journal: Science advances

Authors' code: cocoanlab/PEPSI (no license), doi:10.5061/dryad.41ns1rnpj (no license)

Status: code verified, 4 files readable, 1 match

[24586] doi:10.1126/sciadv.adp6665 [paper, data]

Voltage-dependent G-protein regulation of Ca&lt;sub&gt;V&lt;/sub&gt;2.2 (N-type) channels.

Journal: Science advances

Status: data only, 2 datasets cited

[24587] doi:10.1162/imag_a_00244 [paper, repository]

Whole-head high-density diffuse optical tomography to map infant audio-visual responses to social and non-social stimuli.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DOT-HUB (no license)

Status: code verified

[24588] doi:10.1162/nol_a_00147 [paper, repository]

Can the Mismatch Negativity Really Be Elicited by Abstract Linguistic Contrasts?

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF yx9zm (no license)

Status: code verified, 11 files readable, 4 matches

[24589] doi:10.1162/nol_a_00149 [paper, repository]

Subword Representations Successfully Decode Brain Responses to Morphologically Complex Written Words.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: aaltoimaginglanguage/hakala2024 (no license)

Status: code verified, 14 files readable, 3 matches

[24590] doi:10.1162/nol_a_00150 [paper, repository]

Neural Mechanisms of Learning and Consolidation of Morphologically Derived Words in a Novel Language: Evidence From Hebrew Speakers.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF ju7vh (no license)

Status: code verified, 2 files readable, 1 match

[24591] doi:10.1162/nol_a_00151 [paper, repository]

A Comparison of Denoising Approaches for Spoken Word Production Related Artefacts in Continuous Multiband fMRI Data.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: paulmmacey/lmgs (MIT), OSF fh5xb (no license)

Status: code verified, 5 files readable, 2 matches

[24592] doi:10.1177/13524585241275491 [paper, data]

Is there a prodrome to NMOSD? An investigation of neurologic symptoms preceding the first NMOSD attack.

Journal: Multiple sclerosis (Houndmills, Basingstoke, England)

Status: data only, 1 dataset cited

[24593] doi:10.1186/s12916-024-03610-w [paper, repository]

Between faces: childhood adversity is associated with reduced threat-safety discrimination during facial expression processing in adolescence.

Journal: BMC medicine

Authors' code: TimVanWesemael/Fuzzy-AOI-EyeTracking (MIT)

Status: code verified, 24 files readable, 3 matches

[24594] doi:10.1186/s12987-024-00572-2 [paper]

Coupled pulsatile vascular and paravascular fluid dynamics in the human brain.

Journal: Fluids and barriers of the CNS

Status: code on request

[24595] doi:10.1186/s41235-024-00580-8 [paper, data]

Audiovisual messages may improve the processing of traffic information and driver attention during partially automated driving: An EEG study.

Journal: Cognitive research: principles and implications

Status: data only, 1 dataset cited

[24596] doi:10.1371/journal.pbio.3002784 [paper, data]

Beta-band neural variability reveals age-related dissociations in human working memory maintenance and deletion.

Journal: PLoS biology

Status: data only, 1 dataset cited

[24597] doi:10.1371/journal.pcbi.1011806 [paper, repository]

Creating cell-specific computational models of stem cell-derived cardiomyocytes using optical experiments.

Journal: PLoS computational biology

Authors' code: janice-yang/CM-model-calibration (no license)

Status: code verified, 82 files readable, 2 matches

[24598] doi:10.1371/journal.pcbi.1012429 [paper, repository]

Oscillations in an artificial neural network convert competing inputs into a temporal code.

Journal: PLoS computational biology

Authors' code: katduecker/dnn_osci (no license)

Status: code verified, 19 files readable, 3 matches

[24599] doi:10.1371/journal.pgen.1011093 [paper, repository]

Direct targets of MEF2C are enriched for genes associated with schizophrenia and cognitive function and are involved in neuron development and mitochondrial function.

Journal: PLoS genetics

Authors' code: bulik/ldsc (GPL-3.0), NathanSkene/EWCE (no license)

Status: code verified, 158 files readable, 1 match

[24600] doi:10.1371/journal.ppat.1012552 [paper, repository]

Prion diseases disrupt glutamate/glutamine metabolism in skeletal muscle.

Journal: PLoS pathogens

Authors' code: marusakod/RML_extraneural_organs (no license)

Status: code verified, 9 files readable, 3 matches

[24601] doi:10.1523/jneurosci.0018-24.2024 [paper, repository]

Encoding of 2D Self-Centered Plans and World-Centered Positions in the Rat Frontal Orienting Field.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: erlichlab/fof-visually-guided (MIT)

Status: empty repository, 2 files readable

[24602] doi:10.1523/jneurosci.2236-23.2024 [paper, repository]

Decision-Making with Predictions of Others' Likely and Unlikely Choices in the Human Brain.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF ge69r (no license)

Status: code verified, 75 files readable

[24603] doi:10.3389/fgene.2024.1455616 [paper, data]

Ninein, a candidate gene for ethanol anxiolysis, shows complex exon-specific expression and alternative splicing differences between C57BL/6J and DBA/2J mice.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[24604] doi:10.3389/frmbi.2024.1430340 [paper, repository]

The effect of dietary omega-6 fatty acid enrichment in rodent models of military-relevant acute traumatic psychological stress and traumatic brain injury.

Journal: Frontiers in microbiomes

Authors' code: cran.r-project.org/package=leaps (no license)

Status: code verified

[24605] doi:10.3390/brainsci14090915 [paper, repository]

Fronto-Central Changes in Multiple Frequency Bands in Active Tactile Width Discrimination Task.

Journal: Brain sciences

Authors' code: OSF qwbxg (no license)

Status: code found, still to be checked

[24606] doi:10.3390/ijms25189840 [paper, repository]

Network Analysis of Enhancer-Promoter Interactions Highlights Cell-Type-Specific Mechanisms of Transcriptional Regulation Variation.

Journal: International journal of molecular sciences

Authors' code: JKoesterich/Cell_Spec_EPI (no license)

Status: code verified, 5 files readable, 3 matches

Tuesday, 10 September 2024 (49 papers, 34 on this page)

[24607] doi:10.1002/mco2.712 [paper, data]

Loss-of-function variants in RNA binding motif protein X-linked induce neuronal defects contributing to amyotrophic lateral sclerosis pathogenesis.

Journal: MedComm

Status: data only, 1 dataset cited

[24608] doi:10.1007/s12021-024-09690-6 [paper, repository]

Understanding Learning from EEG Data: Combining Machine Learning and Feature Engineering Based on Hidden Markov Models and Mixed Models.

Journal: Neuroinformatics

Authors' code: GabrielRPalma/UnderstandingLearningWithML (MIT)

Status: code verified, 49 files readable, 5 matches

[24609] doi:10.1016/j.dcn.2024.101444 [paper, repository]

Neural processing of speech sounds at premature and term birth: ERPs and MMR between 32 and 42 weeks of gestation.

Journal: Developmental cognitive neuroscience

Authors' code: OSF bx952 (no license)

Status: code verified

[24610] doi:10.1016/j.isci.2024.110919 [paper]

Aging is associated with a modality-specific decline in taste.

Journal: iScience

Status: code on request

[24611] doi:10.1016/j.nicl.2024.103671 [paper, repository]

Frontotemporal lobar degeneration changes neuronal beta-frequency dynamics during the mismatch negativity response.

Journal: NeuroImage. Clinical

Authors' code: AlistairPerry/FTLDMEGTF (no license), mrc-cbu/riksneurotools (GPL-3.0)

Status: code verified, 23 files readable, 3 matches

[24612] doi:10.1038/s41380-024-02690-7 [paper, repository]

Whole-brain turbulent dynamics predict responsiveness to pharmacological treatment in major depressive disorder.

Journal: Molecular psychiatry

Authors' code: yonisanzperl/The-Turbulent-Brain-v2 (no license)

Status: code verified, 36 files readable, 2 matches

[24613] doi:10.1038/s41431-024-01680-1 [paper, data]

Genomic Balancing Act: deciphering DNA rearrangements in the complex chromosomal aberration involving 5p15.2, 2q31.1, and 18q21.32.

Journal: European journal of human genetics : EJHG

Status: data only, 1 dataset cited

[24614] doi:10.1038/s41467-024-51432-4 [paper, repository]

Deep intravital brain tumor imaging enabled by tailored three-photon microscopy and analysis.

Journal: Nature communications

Authors' code: prevedel-lab/AO (no license), prevedel-lab/Deep3P-Denoising (GPL-3.0), Zenodo 11175040 (CC-BY-4.0)

Status: code verified, 30 files readable, 8 matches

[24615] doi:10.1038/s41467-024-51910-9 [paper, repository]

Interindividual differences in pain can be explained by fMRI, sociodemographic, and psychological factors.

Journal: Nature communications

Authors' code: canlab/CanlabCore (GPL-2.0), cocoanlab/CocoanCore (GPL-3.0), figshare 23691669 (CC-BY-4.0)

Status: code verified, 2,127 files readable, 12 matches

[24616] doi:10.1038/s41467-024-51986-3 [paper, repository]

ARViS: a bleed-free multi-site automated injection robot for accurate, fast, and dense delivery of virus to mouse and marmoset cerebral cortex.

Journal: Nature communications

Authors' code: nomurshin/ARViS_Automated_Robotic_Virus_injection_System (MIT)

Status: code verified, 32 files readable, 10 matches

[24617] doi:10.1038/s41467-024-52095-x [paper, data]

Variants in LRRC7 lead to intellectual disability, autism, aggression and abnormal eating behaviors.

Journal: Nature communications

Status: data only, 1 dataset cited

[24618] doi:10.1038/s41467-024-52243-3 [paper, repository]

A distinct neuronal ensemble of prelimbic cortex mediates spontaneous pain in rats with peripheral inflammation.

Journal: Nature communications

Authors' code: Zenodo 13232143 (CC-BY-4.0), lymylu/spontaneouspain_code (no license)

Status: code verified, 8 files readable, 8 matches

[24619] doi:10.1038/s41467-024-52292-8 [paper, data]

RING1 missense variants reveal sensitivity of DNA damage repair to H2A monoubiquitination dosage during neurogenesis.

Journal: Nature communications

Status: data only, 1 dataset cited

[24620] doi:10.1038/s41467-024-52295-5 [paper, repository]

Concept and location neurons in the human brain provide the 'what' and 'where' in memory formation.

Journal: Nature communications

Authors' code: s-mackay/grid_memory (MIT)

Status: code verified, 33 files readable, 9 matches

[24621] doi:10.1038/s41467-024-52297-3 [paper, repository]

Entorhinal cortex vulnerability to human APP expression promotes hyperexcitability and tau pathology.

Journal: Nature communications

Authors' code: steven-shuken/permFDP (MIT)

Status: code verified, 9 files readable, 1 match

[24622] doi:10.1038/s41531-024-00788-x [paper, data]

GPR37 processing in neurodegeneration: a potential marker for Parkinson's Disease progression rate.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[24623] doi:10.1038/s41588-024-01906-4 [paper, repository]

Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view.

Journal: Nature genetics

Authors' code: bioinfo-biols/MAGIC-seq (no license), Zenodo 13235505 (CC-BY-4.0)

Status: code verified, 3 files readable, 5 matches

[24624] doi:10.1038/s41597-024-03797-w [paper, data]

Resting-state EEG data before and after cognitive activity across the adult lifespan and a 5-year follow-up.

Journal: Scientific data

Status: data only, 1 dataset cited

[24625] doi:10.1038/s41597-024-03823-x [paper, repository]

A single-cell transcriptomic dataset of pluripotent stem cell-derived astrocytes via NFIB/SOX9 overexpression.

Journal: Scientific data

Authors' code: ShuaiC-CYLab/iPSC-derived-astrocytes_scRNASeq (no license)

Status: code verified, 8 files readable, 4 matches

[24626] doi:10.1038/s41598-024-71692-w [paper, repository]

On the effects of impulsivity and compulsivity on neural correlates of model-based performance.

Journal: Scientific reports

Authors' code: OSF vytdr (no license)

Status: code verified, 3 files readable

[24627] doi:10.1038/s41598-024-72096-6 [paper, data]

NACC2, a molecular effector of miR-132 regulation at the interface between adult neurogenesis and Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24628] doi:10.1038/s42003-024-06757-7 [paper, repository]

Embodiment in episodic memory through premotor-hippocampal coupling.

Journal: Communications biology

Authors' code: BlankeLab/ExVR (MIT), OSF bc3f2 (no license)

Status: code verified, 197 files readable, 11 matches

[24629] doi:10.1038/s42003-024-06813-2 [paper, repository]

Integrating large-scale single-cell RNA sequencing in central nervous system disease using self-supervised contrastive learning.

Journal: Communications biology

Authors' code: farry92/ScCM (no license), Zenodo 13119941 (CC-BY-4.0)

Status: code verified, 22 files readable, 5 matches

[24630] doi:10.1073/pnas.2321008121 [paper, data]

Leader-follower dynamics during early social interactions matter for infant word learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24631] doi:10.1073/pnas.2402518121 [paper, repository]

Three-dimensional chromatin mapping of sensory neurons reveals that promoter-enhancer looping is required for axonal regeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: zwang-bioinformatics/RAD21-2024 (no license)

Status: code verified, 6 files readable, 2 matches

[24632] doi:10.1093/ehjdh/ztae068 [paper, repository]

Prediction of cardiovascular markers and diseases using retinal fundus images and deep learning: a systematic scoping review.

Journal: European heart journal. Digital health

Authors' code: figshare 24793203 (CC-BY-4.0), figshare 25610088 (CC-BY-4.0)

Status: empty repository

[24633] doi:10.1093/iob/obae035 [paper, repository]

The Role of <i>Polycystic Kidney Disease-Like</i> Homologs in Planarian Nervous System Regeneration and Function.

Journal: Integrative organismal biology (Oxford, England)

Authors' code: amazon.com (no license)

Status: code verified

[24634] doi:10.1093/nsr/nwae321 [paper, repository]

DNA palette code for time-series archival data storage.

Journal: National science review

Authors' code: ZihuiYan/DNA-Palette-code (no license)

Status: code verified, 9 files readable

[24635] doi:10.1162/imag_a_00262 [paper, repository]

Impact of analytic decisions on test-retest reliability of individual and group estimates in functional magnetic resonance imaging: A multiverse analysis using the monetary incentive delay task.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: demidenm/Multiverse_Reliability (MIT), Zenodo 12522260 (CC-BY-4.0), Zenodo 12701229 (CC-BY-4.0), Zenodo 7117719 (Apache-2.0), demidenm/pyrelimri (MIT)

Status: code verified, 143 files readable, 23 matches

[24636] doi:10.1177/26331055241268079 [paper, repository]

In Humans, Insulo-striate Structural Connectivity is Largely Biased Toward Either Striosome-like or Matrix-like Striatal Compartments.

Journal: Neuroscience insights

Authors' code: jeff-waugh/Striatal-Connectivity-based-Parcellation (no license)

Status: code verified, 17 files readable, 1 match

[24637] doi:10.1186/s13148-024-01734-7 [paper, repository]

DNAm scores for serum GDF15 and NT-proBNP levels associate with a range of traits affecting the body and brain.

Journal: Clinical epigenetics

Authors' code: DanniGadd/EpiScores-GDF15-NT-proBNP (no license), ed.ac.uk/lothian-birth-cohorts/summary-data-resources (no license), Zenodo 6801458 (CC-BY-4.0)

Status: code verified, 28 files readable, 17 matches

[24638] doi:10.1242/dmm.050934 [paper, data]

Deficient GATA6-CXCR7 signaling leads to bicuspid aortic valve.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[24639] doi:10.1371/journal.pbio.3002790 [paper, repository]

Multisensory perceptual and causal inference is largely preserved in medicated post-acute individuals with schizophrenia.

Journal: PLoS biology

Authors' code: supp:PMC11466413/pbio.3002790.s024.zip (no license), supp:PMC11466413/pbio.3002790.s025.zip (no license), supp:PMC11466413/pbio.3002790.s026.zip (no license), supp:PMC11466413/pbio.3002790.s027.zip (no license), supp:PMC11466413/pbio.3002790.s028.zip (no license), supp:PMC11466413/pbio.3002790.s029.zip (no license), supp:PMC11466413/pbio.3002790.s030.zip (no license), supp:PMC11466413/pbio.3002790.s031.zip (no license), supp:PMC11466413/pbio.3002790.s032.zip (no license), supp:PMC11466413/pbio.3002790.s033.zip (no license), supp:PMC11466413/pbio.3002790.s034.zip (no license), Zenodo 13151431 (CC-BY-4.0), Zenodo 13151432 (CC-BY-4.0)

Status: code verified, 24 files readable, 11 matches

[24640] doi:10.1371/journal.pcbi.1012379 [paper, repository]

The primacy model and the structure of olfactory space.

Journal: PLoS computational biology

Authors' code: KoulakovLab/PrimacyModel (no license)

Status: code verified, 10 files readable

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