Every paper, by date: page 111

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 111 of 200: 10 September 2024 to 1 September 2024.

Tuesday, 10 September 2024 (49 papers, 15 on this page)

[24641] doi:10.1371/journal.pone.0309416 [paper, data]

Multivalency drives interactions of alpha-synuclein fibrils with tau.

Journal: PloS one

Status: data only, 1 dataset cited

[24642] doi:10.1523/eneuro.0259-24.2024 [paper, repository]

Homeostatic Regulation of Spike Rate within Bursts in Two Distinct Preparations.

Journal: eNeuro

Authors' code: pwenner/eNeuro-2024 (MIT)

Status: empty repository, 2 files readable

[24643] doi:10.1556/2006.2024.00044 [paper, data]

Comparative analysis of cortical anatomy in male participants with internet gaming disorder or tobacco use disorder: Insights from normative modeling.

Journal: Journal of behavioral addictions

Status: data only, 1 dataset cited

[24644] doi:10.21203/rs.3.rs-4803512/v1 [paper, repository]

GINNA, a 33 resting-state networks atlas with meta-analytic decoding-based cognitive characterization

Journal: Research Square (preprint)

Authors' code: Zenodo 14732372 (GPL-3.0), achillegillig/ginna (GPL-3.0), Zenodo 14732371 (GPL-3.0)

Status: code verified, 21 files readable

[24645] doi:10.3389/fmicb.2024.1413976 [paper, repository]

The gut microbiota-immune-brain axis in a wild vertebrate: dynamic interactions and health impacts.

Journal: Frontiers in microbiology

Authors' code: hugoeira/Gut-immune-brain-axis-common-buzzard-nestlings (GPL-3.0)

Status: empty repository, 2 files readable

[24646] doi:10.3389/fncir.2024.1456558 [paper, repository]

Criticality and universality in neuronal cultures during "up" and "down" states.

Journal: Frontiers in neural circuits

Authors' code: Zenodo 1119025 (MIT)

Status: code verified, 949 files readable, 4 matches

[24647] doi:10.3389/fnhum.2024.1455776 [paper, repository]

The degenerate coding of psychometric profiles through functional connectivity archetypes.

Journal: Frontiers in human neuroscience

Authors' code: smndpln/DegeneracyBrainArchetypes (CC0-1.0)

Status: code verified, 12 files readable, 8 matches

[24648] doi:10.3389/fpsyt.2024.1431837 [paper]

Restoration of abnormal sleep EEG power in patients with insomnia disorder after 1Hz rTMS over left DLPFC.

Journal: Frontiers in psychiatry

Status: code on request

[24649] doi:10.3390/biomedicines12092054 [paper, data]

Resting-State EEG Alterations of Practice-Related Spectral Activity and Connectivity Patterns in Depression.

Journal: Biomedicines

Status: code on request, 2 datasets cited

[24650] doi:10.3390/jcm13185358 [paper, repository]

Metaanalysis of Repetitive Transcranial Magnetic Stimulation (rTMS) Efficacy for OCD Treatment: The Impact of Stimulation Parameters, Symptom Subtype and rTMS-Induced Electrical Field.

Journal: Journal of clinical medicine

Authors' code: OSF 6vq7d (no license)

Status: code verified, 5 files readable, 2 matches

[24651] doi:10.3390/life14091143 [paper]

A Unified Pipeline for Simultaneous Brain Tumor Classification and Segmentation Using Fine-Tuned CNN and Residual UNet Architecture.

Journal: Life (Basel, Switzerland)

Status: code on request

[24652] doi:10.3390/molecules29184293 [paper, repository]

The Importance of Biotinylation for the Suitability of Cationic and Neutral Fourth-Generation Polyamidoamine Dendrimers as Targeted Drug Carriers in the Therapy of Glioma and Liver Cancer.

Journal: Molecules (Basel, Switzerland)

Authors' code: pubchem.ncbi.nlm.nih.gov (no license)

Status: code verified

[24653] doi:10.3390/nu16183049 [paper, data]

Nutraceutical Capsules LL1 and Silymarin Supplementation Act on Mood and Sleep Quality Perception by Microbiota-Gut-Brain Axis: A Pilot Clinical Study.

Journal: Nutrients

Status: data only, 1 dataset cited

[24654] doi:10.7554/elife.93604 [paper, data]

Glial ferritin maintains neural stem cells via transporting iron required for self-renewal in <i>Drosophila</i>.

Journal: eLife

Status: data only, 2 datasets cited

[24655] doi:10.7554/elife.94198 [paper, repository]

Speech-induced suppression and vocal feedback sensitivity in human cortex.

Journal: eLife

Authors' code: flinkerlab/Sensitivity-Suppression (GPL-3.0)

Status: code verified, 4 files readable

Monday, 9 September 2024 (25 papers)

[24656] doi:10.1007/s00422-024-00996-x [paper, repository]

Variational analysis of sensory feedback mechanisms in powerstroke-recovery systems.

Journal: Biological cybernetics

Authors' code: zhuojunyu-appliedmath/Powerstroke-recovery (no license)

Status: code verified, 29 files readable, 4 matches

[24657] doi:10.1016/j.crmeth.2024.100858 [paper]

Fully defined NGN2 neuron protocol reveals diverse signatures of neuronal maturation.

Journal: Cell reports methods

Status: code on request

[24658] doi:10.1016/j.crmeth.2024.100861 [paper, repository]

SynBot is an open-source image analysis software for automated quantification of synapses.

Journal: Cell reports methods

Authors' code: Eroglu-Lab/Syn_Bot (MIT), Zenodo 12191805 (CC-BY-4.0), Zenodo 12571789 (CC-BY-4.0)

Status: code verified, 19 files readable, 1 match

[24659] doi:10.1016/j.ebiom.2024.105313 [paper, repository]

Prediction of depressive symptoms severity based on sleep quality, anxiety, and gray matter volume: a generalizable machine learning approach across three datasets.

Journal: EBioMedicine

Authors' code: Mahnaz-Olfati/Depression-Prediction (no license)

Status: code verified, 9 files readable, 5 matches

[24660] doi:10.1038/s41398-024-03067-8 [paper, repository]

Neuroimaging markers of aberrant brain activity and treatment response in schizophrenia patients based on brain complexity.

Journal: Translational psychiatry

Authors' code: OSF mr8f7 (no license)

Status: code verified, 4 files readable, 3 matches

[24661] doi:10.1038/s41419-024-07042-5 [paper, data]

Cilia defects upon loss of WDR4 are linked to proteasomal hyperactivity and ubiquitin shortage.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[24662] doi:10.1038/s41467-024-51837-1 [paper, repository]

Propofol disrupts the functional core-matrix architecture of the thalamus in humans.

Journal: Nature communications

Authors' code: figshare 25927939 (CC-BY-4.0), dominance-analysis/dominance-analysis (MIT)

Status: code verified, 12 files readable, 2 matches

[24663] doi:10.1038/s41467-024-52025-x [paper, repository]

Genetic, transcriptomic, histological, and biochemical analysis of progressive supranuclear palsy implicates glial activation and novel risk genes.

Journal: Nature communications

Authors' code: broadinstitute/picard (MIT), jackhump/PSP_GWAS (no license), Zenodo 12668541 (CC-BY-4.0)

Status: code verified, 773 files readable, 6 matches

[24664] doi:10.1038/s41467-024-52167-y [paper, repository]

Glioblastoma cells increase expression of notch signaling and synaptic genes within infiltrated brain tissue.

Journal: Nature communications

Authors' code: Zenodo 22040374 (MIT)

Status: code verified, 12 files readable, 1 match

[24665] doi:10.1038/s41514-024-00164-2 [paper]

Glucose metabolism and smaller hippocampal volume in elderly people with normal cognitive function.

Journal: npj aging

Status: code on request

[24666] doi:10.1038/s41562-024-01980-y [paper, repository]

Distributed representations of behaviour-derived object dimensions in the human visual system.

Journal: Nature human behaviour

Authors' code: ViCCo-Group/dimension_encoding (MIT)

Status: code verified, 21 files readable, 7 matches

[24667] doi:10.1038/s41593-024-01749-6 [paper, repository]

Oligodendroglial fatty acid metabolism as a central nervous system energy reserve.

Journal: Nature neuroscience

Authors' code: Andrea3v/CAP-waveform-analysis (no license)

Status: code verified, 2 files readable

[24668] doi:10.1038/s41597-024-03819-7 [paper, repository]

The Aphasia Recovery Cohort, an open-source chronic stroke repository.

Journal: Scientific data

Authors' code: neurolabusc/AphasiaRecoveryCohortDemo (BSD-2-Clause)

Status: code verified, 12 files readable, 2 matches

[24669] doi:10.1038/s41598-024-71309-2 [paper, repository]

Neurodevelopmental imprints of sociomarkers in adolescent brain connectomes.

Journal: Scientific reports

Authors' code: optuna/optuna-examples (MIT)

Status: code verified, 79 files readable

[24670] doi:10.1038/s41598-024-71517-w [paper, repository]

Validation of neuron activation patterns for artificial intelligence models in oculomics.

Journal: Scientific reports

Authors' code: huggingface.co/san727-uoa/nap-for-sbp-oculomics (no license)

Status: dead link

[24671] doi:10.1038/s41598-024-71690-y [paper, repository]

Commonalities and variations in emotion representation across modalities and brain regions.

Journal: Scientific reports

Authors' code: KamitaniLab/EmotionVideoNeuralRepresentation (MIT)

Status: code verified, 87 files readable, 4 matches

[24672] doi:10.1038/s41598-024-71691-x [paper, repository]

The neural basis of attentional selection in goal-directed memory retrieval.

Journal: Scientific reports

Authors' code: OSF p93gm (no license)

Status: code verified, 78 files readable, 21 matches

[24673] doi:10.1038/s41598-024-71888-0 [paper, data]

Microvascular and cellular dysfunctions in Alzheimer's disease: an integrative analysis perspective.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24674] doi:10.1038/s42003-024-06732-2 [paper, repository]

Antagonistic behavior of brain networks mediated by low-frequency oscillations: electrophysiological dynamics during internal-external attention switching.

Journal: Communications biology

Authors' code: JiriHammer/SEEG_dataAnalysis (GPL-3.0)

Status: code verified, 247 files readable, 20 matches

[24675] doi:10.1038/s42255-024-01118-4 [paper, repository]

Spatial single-cell isotope tracing reveals heterogeneity of de novo fatty acid synthesis in cancer.

Journal: Nature metabolism

Authors' code: Buglakova/13C-SpaceM (no license)

Status: code verified, 25 files readable, 4 matches

[24676] doi:10.1038/s44319-024-00244-0 [paper]

Gene therapy for epilepsy targeting neuropeptide Y and its Y2 receptor to dentate gyrus granule cells.

Journal: EMBO reports

Status: data only

[24677] doi:10.1073/pnas.2403200121 [paper, repository]

COVID-19 lockdown effects on adolescent brain structure suggest accelerated maturation that is more pronounced in females than in males.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 13227189 (CC-BY-4.0), nevacorr/Adolescent_Normative_Modeling_CT_2024 (no license)

Status: code verified, 39 files readable, 5 matches

[24678] doi:10.1186/s12879-024-09844-6 [paper, data]

Acute necrotizing encephalopathy in adult patients with influenza: a case report and review of the literature.

Journal: BMC infectious diseases

Status: data only, 1 dataset cited

[24679] doi:10.1371/journal.pcbi.1012433 [paper, repository]

A comparison of EEG encoding models using audiovisual stimuli and their unimodal counterparts.

Journal: PLoS computational biology

Authors' code: HamiltonLabUT/EEG-encoding-audiovisual (no license)

Status: code verified, 32 files readable, 8 matches

[24680] doi:10.1371/journal.pone.0309885 [paper, data]

Utility of neuromelanin-sensitive MRI in the diagnosis of dementia with Lewy bodies.

Journal: PloS one

Status: data only, 1 dataset cited

Sunday, 8 September 2024 (2 papers)

[24681] doi:10.1038/s41467-024-52149-0 [paper, repository]

Human cell surface-AAV interactomes identify LRP6 as blood-brain barrier transcytosis receptor and immune cytokine IL3 as AAV9 binder.

Journal: Nature communications

Authors' code: GradinaruLab/in-vitro-transduction-assay (GPL-3.0)

Status: code verified, 9 files readable

[24682] doi:10.3390/biomedicines12092043 [paper, data]

Iron Trace Elements Concentration in PM₁₀ and Alzheimer's Disease in Lima, Peru: Ecological Study.

Journal: Biomedicines

Status: data only, 1 dataset cited

Saturday, 7 September 2024 (12 papers)

[24683] doi:10.1007/s11682-024-00913-7 [paper]

Multimodal nonlinear correlates of behavioural symptoms in frontotemporal dementia.

Journal: Brain imaging and behavior

Status: code on request

[24684] doi:10.1007/s11682-024-00918-2 [paper, repository]

Can an online battery match in-person cognitive testing in providing information about age-related cortical morphology?

Journal: Brain imaging and behavior

Authors' code: LeonieBorne/brain-cognition-pisa (no license)

Status: code verified, 12 files readable

[24685] doi:10.1016/j.jbc.2024.107749 [paper, repository]

Profiling metabolome of mouse embryonic cerebrospinal fluid following maternal immune activation.

Journal: The Journal of biological chemistry

Authors' code: frozengas/kanareklabtracefinderrscripts (GPL-3.0)

Status: code verified, 5 files readable, 2 matches

[24686] doi:10.1016/j.neurot.2024.e00447 [paper, data]

Mitochondria-related HSDL2 is a potential biomarker in temporal lobe epilepsy by modulating astrocytic lipid metabolism.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[24687] doi:10.1016/j.redox.2024.103346 [paper, data]

LOX-mediated ECM mechanical stress induces Piezo1 activation in hypoxic-ischemic brain damage and identification of novel inhibitor of LOX.

Journal: Redox biology

Status: data only, 1 dataset cited

[24688] doi:10.1016/j.scog.2024.100329 [paper]

Training individuals with schizophrenia to gain volitional control of the theory of mind network with real-time fMRI: A pilot study.

Journal: Schizophrenia research. Cognition

Status: code on request

[24689] doi:10.1016/j.xpro.2024.103289 [paper]

Protocol for preparation of a textile magnetoelastic generator patch.

Journal: STAR protocols

Status: code on request

[24690] doi:10.1038/s41398-024-03081-w [paper]

Orphan receptor-GPR52 inverse agonist efficacy in ameliorating chronic stress-related deficits in reward motivation and phasic accumbal dopamine activity in mice.

Journal: Translational psychiatry

Status: code on request

[24691] doi:10.1038/s41467-024-51868-8 [paper, repository]

Network state changes in sensory thalamus represent learned outcomes.

Journal: Nature communications

Authors' code: brian-lau/multdist (GPL-3.0), doi:10.12751/g-node.1rfzbn (no license)

Status: code verified, 11 files readable

[24692] doi:10.1038/s41467-024-52290-w [paper, data]

Optimal level of human intracranial theta activity for behavioral switching in the subthalamo-medio-prefrontal circuit.

Journal: Nature communications

Status: code on request, 1 dataset cited

[24693] doi:10.1093/braincomms/fcae306 [paper, repository]

Changes in electrophysiological aperiodic activity during cognitive control in Parkinson's disease.

Journal: Brain communications

Authors' code: noemiemonchy/PD-SIMON (no license)

Status: code verified, 10 files readable

[24694] doi:10.22088/cjim.15.4.673 [paper]

Gastrointestinal bleeding following traumatic brain injury: A clinical study on predisposing factors and outcomes.

Journal: Caspian journal of internal medicine

Status: code on request

Friday, 6 September 2024 (36 papers)

[24695] doi:10.1002/alz.14163 [paper, repository]

Cognitive modeling of the Mnemonic Similarity Task as a digital biomarker for Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: mdlee/mpt4mst (no license)

Status: code verified, 13 files readable

[24696] doi:10.1007/s40263-024-01115-x [paper, repository]

Effectiveness of Disease-Modifying Treatment on Spinal Cord Lesion Formation in Relapse-Onset Multiple Sclerosis: An MSBase Registry Study.

Journal: CNS drugs

Authors' code: danielkreiter/spinalcord-msbase (GPL-3.0)

Status: code verified, 8 files readable, 8 matches

[24697] doi:10.1016/j.cell.2024.08.009 [paper]

Divergent sensory pathways of sneezing and coughing.

Journal: Cell

Status: code on request

[24698] doi:10.1016/j.isci.2024.110895 [paper, repository]

Microbiota-dependent early-life programming of gastrointestinal motility.

Journal: iScience

Authors' code: doi:10.17632/snpf8f2tcx.1 (no license), alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[24699] doi:10.1016/j.neuroimage.2024.120827 [paper, repository]

Neurodevelopmental subtypes of functional brain organization in the ABCD study using a rigorous analytic framework.

Journal: NeuroImage

Authors' code: nda.nih.gov (no license), jakederosa123/neuro_dev_rsfc_subtypes_abcd- (no license)

Status: code verified, 35 files readable, 16 matches

[24700] doi:10.1038/s41386-024-01946-8 [paper, repository]

Revisiting the role of computational neuroimaging in the era of integrative neuroscience.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: figshare 24321751 (CC-BY-4.0)

Status: empty repository

[24701] doi:10.1038/s41467-024-49457-w [paper, repository]

Intracellular spatial transcriptomic analysis toolkit (InSTAnT).

Journal: Nature communications

Authors' code: Zenodo 3758540 (other-open), bhavaygg/InSTAnT (MIT), Zenodo 10994621 (CC-BY-4.0), zhuanglab/merlin (MIT)

Status: code verified, 172 files readable, 10 matches

[24702] doi:10.1038/s41467-024-51767-y [paper, repository]

Unraveling the spatial organization and development of human thymocytes through integration of spatial transcriptomics and single-cell multi-omics profiling.

Journal: Nature communications

Authors' code: Zenodo 13207776 (CC-BY-4.0), lihuamei/Thymus (GPL-3.0), Zenodo 12803343 (CC-BY-4.0)

Status: code verified, 37 files readable, 31 matches

[24703] doi:10.1038/s41467-024-51816-6 [paper, repository]

Wide-field calcium imaging of cortical activation and functional connectivity in externally- and internally-driven locomotion.

Journal: Nature communications

Authors' code: west0883/calcium_imaging_of_externally_and_internally_driven_locomotion (no license), Zenodo 12688490 (CC-BY-4.0)

Status: code verified, 1,086 files readable, 19 matches

[24704] doi:10.1038/s41467-024-51857-x [paper, data]

Destabilized near-infrared fluorescent nanobodies enable background-free targeting of GFP-based biosensors for imaging and manipulation.

Journal: Nature communications

Status: data only, 6 datasets cited

[24705] doi:10.1038/s41467-024-51904-7 [paper, data]

Divergent mechanisms of steroid inhibition in the human ρ1 GABA&lt;sub&gt;A&lt;/sub&gt; receptor.

Journal: Nature communications

Status: data only, 2 datasets cited

[24706] doi:10.1038/s41467-024-52222-8 [paper, repository]

Cognitive processing speed and accuracy are intrinsically different in genetic architecture and brain phenotypes.

Journal: Nature communications

Authors' code: GenomicSEM/GenomicSEM (GPL-3.0), zjuwulab/GenomicSEM-CognitiveProcessing (no license)

Status: code verified, 36 files readable, 3 matches

[24707] doi:10.1038/s41562-024-01971-z [paper, repository]

Common neural choice signals can emerge artefactually amid multiple distinct value signals.

Journal: Nature human behaviour

Authors' code: froemero/Common_Neural_Choice_Signals_emerge_artifactually (no license), Zenodo 7767956 (other-open), unfoldtoolbox/unfold.jl (MIT)

Status: code verified, 148 files readable, 5 matches

[24708] doi:10.1038/s41593-024-01731-2 [paper, repository]

Dissociative and prioritized modeling of behaviorally relevant neural dynamics using recurrent neural networks.

Journal: Nature neuroscience

Authors' code: ShanechiLab/DPAD (other)

Status: code verified, 33 files readable, 15 matches

[24709] doi:10.1038/s42003-024-06724-2 [paper, repository]

AutoFocus: a hierarchical framework to explore multi-omic disease associations spanning multiple scales of biomolecular interaction.

Journal: Communications biology

Authors' code: krumsieklab/autofocus (no license), krumsieklab/MoDentify (no license), Zenodo 13138435 (CC-BY-4.0)

Status: code verified, 76 files readable, 10 matches

[24710] doi:10.1038/s44319-024-00238-y [paper]

HIV-1 Vpu induces neurotoxicity by promoting Caspase 3-dependent cleavage of TDP-43.

Journal: EMBO reports

Status: data only

[24711] doi:10.1097/aud.0000000000001565 [paper, repository]

Comparison of Performance for Cochlear-Implant Listeners Using Audio Processing Strategies Based on Short-Time Fast Fourier Transform or Spectral Feature Extraction.

Journal: Ear and hearing

Authors' code: OSF 594jq (no license)

Status: code verified, 2 files readable, 2 matches

[24712] doi:10.1101/2024.09.06.611625 [paper, data]

ABBA, a novel tool for whole-brain mapping, reveals brain-wide differences in immediate early genes induction following learning

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[24713] doi:10.1113/jp286754 [paper, repository]

GluN2C/D-containing NMDA receptors enhance temporal summation and increase sound-evoked and spontaneous firing in the inferior colliculus.

Journal: The Journal of physiology

Authors' code: audreydrotos/nmda-paper-2024 (no license)

Status: code verified, 44 files readable, 6 matches

[24714] doi:10.1117/1.jbo.30.s1.s13704 [paper, data]

Comparing spatial distributions of ALA-PpIX and indocyanine green in a whole pig brain glioma model using 3D fluorescence cryotomography.

Journal: Journal of biomedical optics

Status: data only, 1 dataset cited

[24715] doi:10.1126/sciadv.adi7137 [paper, repository]

Learning depends on the information conveyed by temporal relationships between events and is reflected in the dopamine response to cues.

Journal: Science advances

Authors' code: doi:10.5061/dryad.3xsj3txq8 (no license), Zenodo 11622543 (MIT)

Status: code verified, 95 files readable

[24716] doi:10.1159/000540673 [paper, data]

Lower Plasma Levels of Selective VGF (Non-Acronymic) Peptides in Bipolar Disorder: Comparative Analysis Reveals Distinct Patterns across Mood Disorders and Healthy Controls.

Journal: Neuropsychobiology

Status: data only, 1 dataset cited

[24717] doi:10.1371/journal.pbio.3002774 [paper, repository]

Syllable processing is organized in discrete subregions of the human superior temporal gyrus.

Journal: PLoS biology

Authors' code: Zenodo 12792343 (CC-BY-4.0)

Status: code verified, 24 files readable

[24718] doi:10.1371/journal.pcbi.1012430 [paper, repository]

Cracking the neural code for word recognition in convolutional neural networks.

Journal: PLoS computational biology

Authors' code: OSF j5nvs (no license)

Status: code verified, 22 files readable, 4 matches

[24719] doi:10.1371/journal.pone.0289435 [paper, data]

A familial Alzheimer's disease associated mutation in presenilin-1 mediates amyloid-beta independent cell specific neurodegeneration.

Journal: PloS one

Status: data only, 1 dataset cited

[24720] doi:10.1371/journal.pone.0304995 [paper, data]

Classification of Alzheimer disease using DenseNet-201 based on deep transfer learning technique.

Journal: PloS one

Status: data only, 1 dataset cited

[24721] doi:10.1371/journal.pone.0309709 [paper, repository]

Diffusion model-based image generation from rat brain activity.

Journal: PloS one

Authors' code: ut-yakusaku/braindiffusion (MIT)

Status: code verified, 4 files readable

[24722] doi:10.3389/fnbeh.2024.1458502 [paper, data]

Behavioral, neurotransmitter and transcriptomic analyses in male and female <i>Fmr1</i> KO mice.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[24723] doi:10.3389/fncel.2024.1404605 [paper, data]

Dendrites contribute to the gradient of intrinsic timescales encompassing cortical and subcortical brain networks.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[24724] doi:10.3389/fnins.2024.1428666 [paper, repository]

Sex differences in functional and structural alterations of hippocampus region in chronic pain: a DTI and resting-state fMRI study.

Journal: Frontiers in neuroscience

Authors' code: trendscenter/gift (no license)

Status: code verified, 1,047 files readable, 3 matches

[24725] doi:10.3390/brainsci14090901 [paper, repository]

Tai Chi Practice Buffers Aging Effects in Functional Brain Connectivity.

Journal: Brain sciences

Authors' code: cernajonathan15/tai-chi-practice-buffers-aging-effects-in-functional-brain-connectivity- (no license)

Status: code verified, 34 files readable, 21 matches

[24726] doi:10.3390/ijms25179640 [paper, data]

Metabolic Adaptation in Epilepsy: From Acute Response to Chronic Impairment.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[24727] doi:10.3390/ijms25179678 [paper, data]

A Novel Rare PSEN2 Val226Ala in PSEN2 in a Korean Patient with Atypical Alzheimer's Disease, and the Importance of PSEN2 5th Transmembrane Domain (TM5) in AD Pathogenesis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[24728] doi:10.4103/nrr.nrr-d-23-01881 [paper, data]

Telencephalic stab wound injury induces regenerative angiogenesis and neurogenesis in zebrafish: unveiling the role of vascular endothelial growth factor signaling and microglia.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[24729] doi:10.4103/nrr.nrr-d-23-01993 [paper]

Regulator of G protein signaling 6 mediates exercise-induced recovery of hippocampal neurogenesis, learning, and memory in a mouse model of Alzheimer's disease.

Journal: Neural regeneration research

Status: code on request

[24730] doi:10.7554/elife.91605 [paper, repository]

Novel cyclic homogeneous oscillation detection method for high accuracy and specific characterization of neural dynamics.

Journal: eLife

Authors' code: neurotechcenter/CHO (MIT), Zenodo 7486842 (MIT), neurotechcenter/vera (MIT)

Status: code verified, 1,064 files readable, 4 matches

Thursday, 5 September 2024 (35 papers)

[24731] doi:10.1002/alz.14174 [paper, data]

Personalizing progressive changes to brain structure in Alzheimer's disease using normative modeling.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[24732] doi:10.1016/j.isci.2024.110884 [paper, repository]

Spike transmission failures in axons from cortical neurons &lt;i&gt;in vivo&lt;/i&gt;.

Journal: iScience

Authors' code: NTCColumbia/Spike_transmission_failures_in_axons (no license)

Status: code verified, 4 files readable, 1 match

[24733] doi:10.1016/j.xcrm.2024.101715 [paper]

Acutely blocking excessive mitochondrial fission prevents chronic neurodegeneration after traumatic brain injury.

Journal: Cell reports. Medicine

Status: code on request

[24734] doi:10.1038/s41380-024-02740-0 [paper]

Uncovering convergence and divergence between autism and schizophrenia using genomic tools and patients' neurons.

Journal: Molecular psychiatry

Status: code on request

[24735] doi:10.1038/s41398-024-03061-0 [paper, data]

Medial prefrontal neuroplasticity during extended-release naltrexone treatment of opioid use disorder - a longitudinal structural magnetic resonance imaging study.

Journal: Translational psychiatry

Status: data only, 3 datasets cited

[24736] doi:10.1038/s41467-024-51382-x [paper, repository]

scConfluence: single-cell diagonal integration with regularized Inverse Optimal Transport on weakly connected features.

Journal: Nature communications

Authors' code: cantinilab/scconfluence (GPL-3.0), greenleaflab/10x-scatac-2019 (no license), cantinilab/scc_reproducibility (no license), Zenodo 12736947 (CC-BY-4.0)

Status: code verified, 55 files readable, 12 matches

[24737] doi:10.1038/s41467-024-51931-4 [paper, data]

Prion protein alters viral control and enhances pathology after perinatal cytomegalovirus infection.

Journal: Nature communications

Status: code on request, 2 datasets cited

[24738] doi:10.1038/s41467-024-51990-7 [paper, repository]

Hyperscanning shows friends explore and strangers converge in conversation.

Journal: Nature communications

Authors' code: OSF qsnyj (no license)

Status: code verified, 28 files readable, 4 matches

[24739] doi:10.1038/s41467-024-52096-w [paper, repository]

Immune landscape of oncohistone-mutant gliomas reveals diverse myeloid populations and tumor-promoting function.

Journal: Nature communications

Authors' code: fungenomics/scCoAnnotate (Apache-2.0)

Status: code verified, 89 files readable, 1 match

[24740] doi:10.1038/s41598-024-71843-z [paper]

The association of acute and chronic phase cerebrovascular reactivity with patient reported quality of life following moderate-to-severe traumatic brain injury.

Journal: Scientific reports

Status: code on request

[24741] doi:10.1038/s41598-024-72024-8 [paper]

Glioblastoma mesenchymal subtype enhances antioxidant defence to reduce susceptibility to ferroptosis.

Journal: Scientific reports

Status: data only

[24742] doi:10.1038/s41746-024-01227-0 [paper]

Derivation, external and clinical validation of a deep learning approach for detecting intracranial hypertension.

Journal: NPJ digital medicine

Status: code on request

[24743] doi:10.1073/pnas.2321021121 [paper, data]

Capillary regression leads to sustained local hypoperfusion by inducing constriction of upstream transitional vessels.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24744] doi:10.1093/braincomms/fcae298 [paper, repository]

Neurophysiological patterns reflecting vulnerability to delirium subtypes: a resting-state EEG and event-related potential study.

Journal: Brain communications

Authors' code: OSF nxsd7 (no license)

Status: code found, still to be checked

[24745] doi:10.1093/lifemedi/lnae033 [paper]

Deciphering the dynamic single-cell transcriptional landscape in the ocular surface ectoderm differentiation system.

Journal: Life medicine

Status: code on request

[24746] doi:10.1101/2024.09.03.611068 [paper, data]

A flexible photoacoustic retinal prosthesis

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[24747] doi:10.1111/bpa.13297 [paper, data]

Lack of classical astroblastoma features in pediatric MN1::BEND2-fused brain tumors.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 1 dataset cited

[24748] doi:10.1126/science.adk9611 [paper, repository]

Organizing the coactivity structure of the hippocampus from robust to flexible memory.

Journal: Science (New York, N.Y.)

Authors' code: data.mrc.ox.ac.uk/mrcbndu/data-sets (no license)

Status: code verified

[24749] doi:10.1162/imag_a_00284 [paper, repository]

Cerebro-spinal somatotopic organization uncovered through functional connectivity mapping.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: CarolineLndl/BrainSpineSomatotopy2024 (no license)

Status: code verified, 55 files readable, 9 matches

[24750] doi:10.1162/imag_a_00286 [paper, repository]

Lumbosacral spinal cord functional connectivity at rest: From feasibility to reliability.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: iricchi/Lumbar (no license)

Status: code verified, 9 files readable, 7 matches

[24751] doi:10.1186/s12859-024-05919-y [paper, data]

Cortexa: a comprehensive resource for studying gene expression and alternative splicing in the murine brain.

Journal: BMC bioinformatics

Status: data only, 2 datasets cited

[24752] doi:10.1186/s12929-024-01072-z [paper, data]

Neuroprotective effects of intranasal extracellular vesicles from human platelet concentrates supernatants in traumatic brain injury and Parkinson's disease models.

Journal: Journal of biomedical science

Status: data only, 1 dataset cited

[24753] doi:10.12688/f1000research.146327.2 [paper, repository]

Spot Spine, a freely available ImageJ plugin for 3D detection and morphological analysis of dendritic spines.

Journal: F1000Research

Authors' code: JeffGilles/Spot-Spine (GPL-3.0), Zenodo 10622975 (CC-BY-4.0)

Status: code verified, 50 files readable, 1 match

[24754] doi:10.1371/journal.pcbi.1012369 [paper, repository]

Information dynamics of in silico EEG Brain Waves: Insights into oscillations and functions.

Journal: PLoS computational biology

Authors' code: Zenodo 11658278 (CC-BY-4.0), GuEMM/EEG_model (no license), GuEMM/PhiID_Tools (no license)

Status: code verified, 11 files readable, 2 matches

[24755] doi:10.1523/eneuro.0127-24.2024 [paper, repository]

No Evidence of Musical Training Influencing the Cortical Contribution to the Speech-Frequency-Following Response and Its Modulation through Selective Attention.

Journal: eNeuro

Authors' code: Al2606/MEG-Analysis-Pipeline (no license)

Status: code verified, 4 files readable, 3 matches

[24756] doi:10.3233/adr-240062 [paper, data]

Genome-Wide Mendelian Randomization Identifies Ferroptosis-Related Drug Targets for Alzheimer's Disease.

Journal: Journal of Alzheimer's disease reports

Status: data only, 2 datasets cited

[24757] doi:10.3389/fncel.2024.1378579 [paper]

Biphasic response of human iPSC-derived neural network activity following exposure to a sarin-surrogate nerve agent.

Journal: Frontiers in cellular neuroscience

Status: data only

[24758] doi:10.3389/fncel.2024.1458475 [paper, data]

CoA synthase plays a critical role in neurodevelopment and neurodegeneration.

Journal: Frontiers in cellular neuroscience

Status: data only, 2 datasets cited

[24759] doi:10.3389/fninf.2024.1435971 [paper, repository]

Optimizing neuroscience data management by combining REDCap, BIDS and SQLite: a case study in Deep Brain Stimulation.

Journal: Frontiers in neuroinformatics

Authors' code: IM2Neuroing/Image2BIDS2SQLite (MIT)

Status: code verified, 27 files readable, 7 matches

[24760] doi:10.3390/ijms25179621 [paper, data]

Inflammatory Intracellular Signaling in Neurons Is Influenced by Glial Soluble Factors in iPSC-Based Cell Model of <i>PARK2</i>-Associated Parkinson's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[24761] doi:10.3390/molecules29174213 [paper, data]

Amphetamine-like Deferiprone and Clioquinol Derivatives as Iron Chelating Agents.

Journal: Molecules (Basel, Switzerland)

Status: data only, 2 datasets cited

[24762] doi:10.3758/s13415-024-01215-7 [paper]

The subcortical role in executive functions: Neural mechanisms of executive inhibition in the flanker task.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[24763] doi:10.7554/elife.89996 [paper, repository]

Asymmetric distribution of color-opponent response types across mouse visual cortex supports superior color vision in the sky.

Journal: eLife

Authors' code: doi:10.5061/dryad.rv15dv4hb (no license), Zenodo 12797262 (MIT)

Status: code verified, 1 file readable, 3 matches

[24764] doi:10.7554/elife.93789 [paper, repository]

Analysis of fast calcium dynamics of honey bee olfactory coding.

Journal: eLife

Authors' code: mp599/2024_elife (MIT)

Status: code verified, 7 files readable, 7 matches

[24765] doi:10.7554/elife.97150 [paper, repository]

A robust brain network for sustained attention from adolescence to adulthood that predicts later substance use.

Journal: eLife

Authors' code: OSF 6ejpd (no license), YiheWeng/Weng_eLife_2024_scripts (MIT)

Status: code verified, 16 files readable, 7 matches

Wednesday, 4 September 2024 (37 papers)

[24766] doi:10.1007/s12035-024-04433-9 [paper, repository]

The Use of Identified Hypoxia-related Genes to Generate Models for Predicting the Prognosis of Cerebral Ischemia‒reperfusion Injury and Developing Treatment Strategies.

Journal: Molecular neurobiology

Authors' code: pan.baidu.com/s/1g-xuc9bydoo8nzddirrtxw (no license)

Status: code verified

[24767] doi:10.1016/j.bpsgos.2024.100391 [paper, repository]

Deep Screening for X Chromosome Parent-of-Origin Effects on Neurobehavioral and Neuroanatomical Phenotypes in 47,XXY Klinefelter Syndrome.

Journal: Biological psychiatry global open science

Authors' code: LCBC-UiO/ggsegGlasser (other)

Status: code verified, 18 files readable, 2 matches

[24768] doi:10.1016/j.crmeth.2024.100845 [paper, data]

3D model for human glia conversion into subtype-specific neurons, including dopamine neurons.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[24769] doi:10.1016/j.cub.2024.08.008 [paper, repository]

Kinematically distinct saccades are used in a context-dependent manner by larval zebrafish.

Journal: Current biology : CB

Authors' code: doi:10.17632/vd5zdfwc37.1 (no license)

Status: code verified

[24770] doi:10.1016/j.isci.2024.110885 [paper]

Arched microfluidic channel for the promotion of axonal growth performance.

Journal: iScience

Status: code on request

[24771] doi:10.1016/j.isci.2024.110886 [paper]

Divergent input patterns to the central lateral amygdala play a duet in fear memory formation.

Journal: iScience

Status: code on request

[24772] doi:10.1016/j.xcrm.2024.101706 [paper]

Combinatorial targeting of glutamine metabolism and lysosomal-based lipid metabolism effectively suppresses glioblastoma.

Journal: Cell reports. Medicine

Status: code on request

[24773] doi:10.1038/s41398-024-03058-9 [paper, data]

Chromosome X-wide association study in case control studies of pathologically confirmed Alzheimer's disease in a European population.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[24774] doi:10.1038/s41467-024-51884-8 [paper]

Cannabidiol ameliorates mitochondrial disease via PPARγ activation in preclinical models.

Journal: Nature communications

Status: data only

[24775] doi:10.1038/s41467-024-51942-1 [paper, repository]

Sex differences in functional cortical organization reflect differences in network topology rather than cortical morphometry.

Journal: Nature communications

Authors' code: biancaserio/sex_diff_gradients (no license), Zenodo 12785462 (CC-BY-4.0), brainspace.readthedocs.io (no license), micapipe.readthedocs.io (no license)

Status: code verified, 21 files readable, 13 matches

[24776] doi:10.1038/s41467-024-51983-6 [paper, data]

Hypothalamic-hindbrain circuit for consumption-induced fear regulation.

Journal: Nature communications

Status: data only, 1 dataset cited

[24777] doi:10.1038/s41586-024-07805-2 [paper, repository]

Frontostriatal salience network expansion in individuals in depression.

Journal: Nature

Authors' code: NDAR/nda-tools (MIT), cjl2007/Liston-Laboratory-MultiEchofMRI-Pipeline (no license), cjl2007/PFM-Depression (no license)

Status: code verified, 90 files readable, 18 matches

[24778] doi:10.1038/s41586-024-07898-9 [paper, repository]

DNA methylation controls stemness of astrocytes in health and ischaemia.

Journal: Nature

Authors' code: anders-biostat.github.io/methscan (no license), lkremer/scbs (GPL-3.0)

Status: code verified, 18 files readable, 4 matches

[24779] doi:10.1038/s41592-024-02401-8 [paper, repository]

Collaborative augmented reconstruction of 3D neuron morphology in mouse and human brains.

Journal: Nature methods

Authors' code: replicate/cog (Apache-2.0), neurogeom/CAR (MPL-2.0), Zenodo 13103222 (MPL-2.0)

Status: code verified, 480 files readable, 2 matches

[24780] doi:10.1038/s41598-024-71040-y [paper, data]

Mitochondrial dysfunction and increased reactive oxygen species production in MECP2 mutant astrocytes and their impact on neurons.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24781] doi:10.1038/s41598-024-71072-4 [paper]

Multi-modality multi-task model for mRS prediction using diffusion-weighted resonance imaging.

Journal: Scientific reports

Status: code on request

[24782] doi:10.1038/s41598-024-71295-5 [paper, repository]

The dynamic reconfiguration of the functional network during episodic memory task predicts the memory performance.

Journal: Scientific reports

Authors' code: WANG-BIN-LAB/EM_code (no license)

Status: code verified, 54 files readable, 8 matches

[24783] doi:10.1038/s41598-024-71299-1 [paper, data]

ERABiLNet: enhanced residual attention with bidirectional long short-term memory.

Journal: Scientific reports

Status: data only, 2 datasets cited

[24784] doi:10.1073/pnas.2406854121 [paper, data]

ERRα and ERRγ coordinate expression of genes associated with Alzheimer's disease, inhibiting &lt;i&gt;DKK1&lt;/i&gt; to suppress tau phosphorylation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24785] doi:10.1073/pnas.2413104121 [paper]

Cellular and circuit remodeling of the primate foveal midget pathway after acute photoreceptor loss.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[24786] doi:10.1093/braincomms/fcae250 [paper, repository]

Neural response to monetary incentives in acquired adolescent depression after mild traumatic brain injury: Stage 2 Registered Report.

Journal: Brain communications

Authors' code: OSF h5uba (no license)

Status: empty repository

[24787] doi:10.1093/braincomms/fcae300 [paper, repository]

Can integration of Alzheimer's plasma biomarkers with MRI, cardiovascular, genetics, and lifestyle measures improve cognition prediction?

Journal: Brain communications

Authors' code: RobelGebre/CognitionPredictionWithPlasma (no license)

Status: code verified, 7 files readable, 2 matches

[24788] doi:10.1098/rsbl.2024.0202 [paper, data]

The effects of artificial light at night on spider brains.

Journal: Biology letters

Status: data only, 2 datasets cited

[24789] doi:10.1111/jnc.16217 [paper, repository]

Relaxin family peptide receptor 3 (RXFP3) expressing cells in the zona incerta/lateral hypothalamus augment behavioural arousal.

Journal: Journal of neurochemistry

Authors' code: BrandonKR1 (no license)

Status: code verified

[24790] doi:10.1111/jnc.16218 [paper, data]

Visualization of myelin-forming oligodendrocytes in the adult mouse brain.

Journal: Journal of neurochemistry

Status: data only, 1 dataset cited

[24791] doi:10.1152/jn.00156.2024 [paper, data]

Explicit and implicit locomotor learning in individuals with chronic hemiparetic stroke.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[24792] doi:10.1177/11769351241271560 [paper, repository]

Characterization of Expression-Based Gene Clusters Gives Insights into Variation in Patient Response to Cancer Therapies.

Journal: Cancer informatics

Authors' code: gdc.cancer.gov/resources-tcga-users/tcga-code-tables (no license)

Status: code verified

[24793] doi:10.1177/11795972241277322 [paper, data]

A Deep Learning Based Intelligent Decision Support System for Automatic Detection of Brain Tumor.

Journal: Biomedical engineering and computational biology

Status: data only, 1 dataset cited

[24794] doi:10.1186/s13229-024-00615-3 [paper, repository]

Task-based functional neural correlates of social cognition across autism and schizophrenia spectrum disorders.

Journal: Molecular autism

Authors' code: loliver4/EA_ImObs_SPINS_SPASD (no license)

Status: code verified, 41 files readable, 7 matches

[24795] doi:10.1212/nxg.0000000000200180 [paper, data]

Genetic Insights Into Hypothalamic Hamartoma: Unraveling Somatic Variants.

Journal: Neurology. Genetics

Status: data only, 1 dataset cited

[24796] doi:10.1371/journal.pone.0308809 [paper, repository]

A biophysical minimal model to investigate age-related changes in CA1 pyramidal cell electrical activity.

Journal: PloS one

Authors' code: Zenodo 6788229 (CC-BY-4.0), emckiernan/agingCA1 (CC-BY-4.0)

Status: code verified, 4 files readable, 7 matches

[24797] doi:10.3389/fbioe.2024.1390108 [paper, repository]

DENOISING: Dynamic enhancement and noise overcoming in multimodal neural observations via high-density CMOS-based biosensors.

Journal: Frontiers in bioengineering and biotechnology

Authors' code: HayderAminLab/DENOISING (BSD-3-Clause), mhhennig/HS2 (GPL-3.0)

Status: code verified, 61 files readable, 2 matches

[24798] doi:10.3389/fmed.2024.1453743 [paper, data]

Utilizing deep learning models in an intelligent spiral drawing classification system for Parkinson's disease classification.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[24799] doi:10.3389/fpsyg.2024.1441584 [paper, data]

Brain topology underlying executive functions across the lifespan: focus on the default mode network.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[24800] doi:10.3390/s24175749 [paper, data]

Variational Mode Decomposition Analysis of Electroencephalograms during General Anesthesia: Using the Grey Wolf Optimizer to Determine Hyperparameters.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[24801] doi:10.3758/s13423-024-02567-4 [paper, data]

Human retrograde amnesia and memory consolidation.

Journal: Psychonomic bulletin & review

Status: data only, 1 dataset cited

[24802] doi:10.7554/elife.83838 [paper, data]

White matter structural bases for phase accuracy during tapping synchronization.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 3 September 2024 (28 papers)

[24803] doi:10.1002/advs.202400684 [paper, repository]

Integrated Microbiome and Metabolome Analysis Reveals Hypothalamic-Comorbidities Related Signatures in Craniopharyngioma.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: qiime.org/scripts/beta_diversity.html (no license)

Status: code verified

[24804] doi:10.1002/mdc3.14199 [paper, repository]

Quality of Life after Deep Brain Stimulation in Parkinson's Disease: Does the Target Matter?

Journal: Movement disorders clinical practice

Authors' code: kilyth/qol_dbs (GPL-3.0)

Status: code verified, 8 files readable, 8 matches

[24805] doi:10.1007/s00401-024-02789-9 [paper, repository]

Association of quantitative histopathology measurements with antemortem medial temporal lobe cortical thickness in the Alzheimer's disease continuum.

Journal: Acta neuropathologica

Authors' code: pyushkevich/cmrep (GPL-3.0)

Status: code verified, 104 files readable

[24806] doi:10.1007/s00401-024-02793-z [paper, repository]

Rapid brain lymphoma diagnostics through nanopore sequencing of cytology-negative cerebrospinal fluid.

Journal: Acta neuropathologica

Authors' code: neuropathbasel/nanodip_dev (GPL-3.0)

Status: code verified, 13 files readable

[24807] doi:10.1016/j.cdnut.2024.104454 [paper]

Nutritional Optimization for Brain Health in Contact Sports: A Systematic Review and Meta-Analysis on Long-Chain ω-3 Fatty Acids and Neurofilament Light.

Journal: Current developments in nutrition

Status: code on request

[24808] doi:10.1016/j.isci.2024.110875 [paper, repository]

Few-shot meta-learning applied to whole brain activity maps improves systems neuropharmacology and drug discovery.

Journal: iScience

Authors' code: supp:PMC11419810/mmc2.zip (no license)

Status: code verified, 1 file readable, 1 match

[24809] doi:10.1038/s41380-024-02701-7 [paper, repository]

The schizophrenia risk gene C4 induces pathological synaptic loss by impairing AMPAR trafficking.

Journal: Molecular psychiatry

Authors' code: CruzMartinLab/IMARIS_compiler (no license), CruzMartinLab/Ephys_analysis_code (no license)

Status: code verified, 17 files readable, 4 matches

[24810] doi:10.1038/s41593-024-01742-z [paper, repository]

Single-nucleus transcriptomic profiling of human orbitofrontal cortex reveals convergent effects of aging and psychiatric disease.

Journal: Nature neuroscience

Authors' code: gemmashireby/CorticalClock (no license), thewonlab/H-MAGMA (no license), AnnaSophieFroehlich/single_cell_aging (no license)

Status: code verified, 25 files readable, 3 matches

[24811] doi:10.1038/s42003-024-06786-2 [paper, repository]

Unsupervised decomposition of natural monkey behavior into a sequence of motion motifs.

Journal: Communications biology

Authors' code: Zenodo 13337942 (CC-BY-4.0), minamimoto-lab/2024-mimura-smp (no license)

Status: code verified, 42 files readable

[24812] doi:10.1073/pnas.2311953121 [paper, repository]

Interoceptive signals shape the earliest markers and neural pathway to awareness at the visual threshold.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 13342126 (CC-BY-4.0), vivile42/leupin_britz_pnas24 (MIT)

Status: code verified, 76 files readable, 4 matches

[24813] doi:10.1073/pnas.2316256121 [paper, repository]

Joint trajectory inference for single-cell genomics using deep learning with a mixture prior.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: GreenleafLab/MPAL-Single-Cell-2019 (no license)

Status: code verified, 12 files readable, 1 match

[24814] doi:10.1073/pnas.2319804121 [paper, repository]

Unsupervised pattern identification in spatial gene expression atlas reveals mouse brain regions beyond established ontology.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: abbasilab/osNMF (MIT)

Status: code verified, 8 files readable, 4 matches

[24815] doi:10.1073/pnas.2321032121 [paper, repository]

A neural algorithm for computing bipartite matchings.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: metalloids/nmj_matching (GPL-3.0)

Status: code verified, 6 files readable, 4 matches

[24816] doi:10.1073/pnas.2321965121 [paper, repository]

Depressive symptoms during the transition to adolescence: Left hippocampal volume as a marker of social context sensitivity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: matmarti-nu/SEE-LHV-MDD (no license)

Status: code verified, 3 files readable, 6 matches

[24817] doi:10.1073/pnas.2401531121 [paper, data]

Qki5 safeguards spinal motor neuron function by defining the motor neuron-specific transcriptome via pre-mRNA processing.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24818] doi:10.1093/braincomms/fcae291 [paper, repository]

Visual mismatch negativity in Parkinson's psychosis and potential for testing treatment mechanisms.

Journal: Brain communications

Authors' code: VMiri/PDP_MMN (no license)

Status: empty repository, 1 file readable

[24819] doi:10.1093/braincomms/fcae296 [paper, repository]

Neuron collinearity differentiates human hippocampal subregions: a validated deep learning approach.

Journal: Brain communications

Authors' code: AugustinackLab/NeuronParameterEstimates (no license)

Status: code verified, 2 files readable

[24820] doi:10.1186/s13287-024-03805-1 [paper, data]

Nucleoporin 153 deficiency in adult neural stem cells defines a pathological protein-network signature and defective neurogenesis in a mouse model of AD.

Journal: Stem cell research & therapy

Status: data only, 2 datasets cited

[24821] doi:10.1371/journal.pbio.3002760 [paper, repository]

Phosphorylation of the DNA damage repair factor 53BP1 by ATM kinase controls neurodevelopmental programs in cortical brain organoids.

Journal: PLoS biology

Authors' code: figshare 7411835 (MIT)

Status: code verified, 4 files readable

[24822] doi:10.1371/journal.pcbi.1012340 [paper, repository]

Overcoming CRISPR-Cas9 off-target prediction hurdles: A novel approach with ESB rebalancing strategy and CRISPR-MCA model.

Journal: PLoS computational biology

Authors' code: Yang-k955/CRISPR-MCA (no license)

Status: code verified, 12 files readable, 8 matches

[24823] doi:10.1371/journal.pcbi.1012378 [paper, repository]

Selective consistency of recurrent neural networks induced by plasticity as a mechanism of unsupervised perceptual learning.

Journal: PLoS computational biology

Authors' code: Yujingoto/Goto_etal_PLoSCB2024 (no license)

Status: code verified, 4 files readable, 3 matches

[24824] doi:10.1371/journal.pcbi.1012401 [paper, repository]

Learning to integrate parts for whole through correlated neural variability.

Journal: PLoS computational biology

Authors' code: BrainsoupFactory/moment-neural-network (Apache-2.0)

Status: code verified, 90 files readable, 8 matches

[24825] doi:10.1371/journal.pcbi.1012415 [paper, repository]

Maintenance of delay-period activity in working memory task is modulated by local network structure.

Journal: PLoS computational biology

Authors' code: YuDong101/Structure_affects_delayed-period_activities (no license)

Status: code verified, 248 files readable

[24826] doi:10.2967/jnumed.123.267277 [paper, repository]

StepBrain: A 3-Dimensionally Printed Multicompartmental Anthropomorphic Brain Phantom to Simulate PET Activity Distributions.

Journal: Journal of nuclear medicine : official publication, Society of Nuclear Medicine

Authors' code: swederik/pvelab (other)

Status: code verified, 252 files readable

[24827] doi:10.3389/fninf.2024.1465231 [paper, repository]

SEEG4D: a tool for 4D visualization of stereoelectroencephalography data.

Journal: Frontiers in neuroinformatics

Authors' code: mrfil/SEEG4D (no license), Zenodo 12741316 (CC-BY-4.0)

Status: code verified, 26 files readable, 3 matches

[24828] doi:10.3389/fnins.2024.1449673 [paper, repository]

Brain morphological analysis in mice with hyperactivation of the hedgehog signaling pathway.

Journal: Frontiers in neuroscience

Authors' code: ChariteExpMri/antx2 (LGPL-2.1)

Status: code verified, 2,000 files readable, 2 matches

[24829] doi:10.7150/thno.96110 [paper, data]

Maternal immune activation upregulates the AU020206-IRFs-STAT1 axis in modulating cytokine production in the brain.

Journal: Theranostics

Status: data only, 1 dataset cited

[24830] doi:10.7717/peerj-cs.2256 [paper, data]

Ten quick tips for clinical electroencephalographic (EEG) data acquisition and signal processing.

Journal: PeerJ. Computer science

Status: data only, 2 datasets cited

Monday, 2 September 2024 (25 papers)

[24831] doi:10.1002/iub.2903 [paper, repository]

Microglia synchronizes with the circadian rhythm of the glymphatic system and modulates glymphatic system function.

Journal: IUBMB life

Authors' code: RWParsons/circacompare (other)

Status: code verified, 15 files readable

[24832] doi:10.1016/j.heliyon.2024.e37319 [paper, data]

Genetic patterning in hippocampus of rat undergoing impaired spatial memory induced by long-term heat stress.

Journal: Heliyon

Status: data only, 1 dataset cited

[24833] doi:10.1016/j.isci.2024.110872 [paper, data]

Noradrenaline modulates sensory information in mouse vomeronasal sensory neurons.

Journal: iScience

Status: code on request, 1 dataset cited

[24834] doi:10.1016/j.ohx.2024.e00571 [paper, repository]

A modular and flexible open source cell incubator system for mobile and stationary use.

Journal: HardwareX

Authors' code: lbb-neuron/Inkubox (GPL-3.0)

Status: code verified, 9 files readable

[24835] doi:10.1038/s41467-024-49698-9 [paper, repository]

Neurovascular coupling and CO&lt;sub&gt;2&lt;/sub&gt; interrogate distinct vascular regulations.

Journal: Nature communications

Authors' code: laboratory-charpak/nvc_and_co2 (no license)

Status: code verified, 7 files readable

[24836] doi:10.1038/s41467-024-51172-5 [paper, repository]

An international study presenting a federated learning AI platform for pediatric brain tumors.

Journal: Nature communications

Authors' code: edhlee/FLPedBrain (no license), edhlee/FL-PedBrain (no license)

Status: code verified, 22 files readable, 2 matches

[24837] doi:10.1038/s41467-024-51674-2 [paper]

A bioinspired tactile scanner for computer haptics.

Journal: Nature communications

Status: code on request

[24838] doi:10.1038/s41467-024-52121-y [paper, repository]

Investigating the shared genetic architecture between depression and subcortical volumes.

Journal: Nature communications

Authors' code: precimed/pleiofdr (GPL-3.0), precimed/python_convert (GPL-3.0), hakyimlab/MetaXcan (MIT), bulik/ldsc (GPL-3.0), Zenodo 12912958 (CC-BY-4.0), shenlan17/genetic (no license)

Status: code verified, 249 files readable, 3 matches

[24839] doi:10.1038/s41598-024-71316-3 [paper, repository]

Cognitive subgroups of affective and non-affective psychosis show differences in medication and cortico-subcortical brain networks.

Journal: Scientific reports

Authors' code: KatharinaBracher/earlypsychosis_clustering (no license)

Status: code verified, 10 files readable, 9 matches

[24840] doi:10.1038/s42003-024-06728-y [paper, repository]

Cell-specific effects of temporal interference stimulation on cortical function.

Journal: Communications biology

Authors' code: chaitanyagoswami/cell-specific-effects-of-temporal-interference-stimulation-on-cortical-function-code (Apache-2.0), Zenodo 12797409 (Apache-2.0)

Status: code verified, 664 files readable, 3 matches

[24841] doi:10.1038/s44303-024-00031-5 [paper, data]

Focal cortical dysplasia (type II) detection with multi-modal MRI and a deep-learning framework.

Journal: Npj imaging

Status: data only, 1 dataset cited

[24842] doi:10.1186/s12915-024-01989-9 [paper, data]

Genome binding properties of Zic transcription factors underlie their changing functions during neuronal maturation.

Journal: BMC biology

Status: data only, 1 dataset cited

[24843] doi:10.1186/s12967-024-05551-7 [paper, data]

Tilorone mitigates the propagation of α-synucleinopathy in a midbrain-like organoid model.

Journal: Journal of translational medicine

Status: data only, 2 datasets cited

[24844] doi:10.1186/s13041-024-01135-0 [paper, data]

Electroacupuncture reduces inflammatory damage following cerebral ischemia-reperfusion by enhancing ABCA1-mediated efferocytosis in M2 microglia.

Journal: Molecular brain

Status: data only, 7 datasets cited

[24845] doi:10.1186/s13041-024-01138-x [paper, data]

Running-induced neurogenesis reduces CA1 perineuronal net density without substantial temporal delay.

Journal: Molecular brain

Status: data only, 1 dataset cited

[24846] doi:10.1186/s13059-024-03374-9 [paper, repository]

Enhlink infers distal and context-specific enhancer-promoter linkages.

Journal: Genome biology

Authors' code: grouumf/enhlinktools (GPL-3.0), rdrr.io/github/greenleaflab (no license), greenleaflab/archr (MIT), figshare 22807103 (GPL 3.0+), Grouumf/rna_atac_jax_int (no license)

Status: code verified, 91 files readable, 17 matches

[24847] doi:10.1186/s40359-024-01969-2 [paper, data]

Influence of presentation duration on filtering of irrelevant stimuli in visual working memory.

Journal: BMC psychology

Status: data only, 1 dataset cited

[24848] doi:10.2147/jir.s471626 [paper, data]

Interpretable Machine Learning Model for Predicting the Prognosis of Guillain-Barré Syndrome Patients.

Journal: Journal of inflammation research

Status: data only, 1 dataset cited

[24849] doi:10.3389/fmolb.2024.1414119 [paper, data]

Molecular dynamics simulation of the brain-isolated single-domain antibody/nanobody from camels through <i>in vivo</i> phage display screening.

Journal: Frontiers in molecular biosciences

Status: data only, 3 datasets cited

[24850] doi:10.3389/fnins.2024.1441285 [paper, repository]

Accuracy optimized neural networks do not effectively model optic flow tuning in brain area MSTd.

Journal: Frontiers in neuroscience

Authors' code: owlayton/DL-MSTd-Acc-SelfMotion-Release (no license)

Status: code verified, 4 files readable

[24851] doi:10.3390/brainsci14090895 [paper, repository]

Transcranial Magnetic Stimulation Facilitates Neural Speech Decoding.

Journal: Brain sciences

Authors' code: mcjpedro/speech_decoding (no license)

Status: code verified, 8 files readable

[24852] doi:10.3390/e26090751 [paper, repository]

A Randomization-Based, Model-Free Approach to Functional Neuroimaging: A Proof of Concept.

Journal: Entropy (Basel, Switzerland)

Authors' code: matanmazor/TWISTER (MIT)

Status: code verified, 14 files readable

[24853] doi:10.3390/ijms25179545 [paper, data]

Transient Increases in Neural Oscillations and Motor Deficits in a Mouse Model of Parkinson's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[24854] doi:10.3390/life14091103 [paper, data]

Murine Retina Outer Plexiform Layer Development and Transcriptome Analysis of Pre-Synapses in Photoreceptors.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[24855] doi:10.7554/elife.94485 [paper, data]

Future movement plans interact in sequential arm movements.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 1 September 2024 (53 papers, 9 on this page)

[24856] doi:10.1002/brb3.70020 [paper, data]

Color and brightness at work: Shedding some light on mind wandering.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[24857] doi:10.1002/hbm.26815 [paper, repository]

Dataset factors associated with age-related changes in brain structure and function in neurodevelopmental conditions.

Journal: Human brain mapping

Authors' code: braincode.ca (no license)

Status: code found, still to be checked

[24858] doi:10.1002/hbm.70005 [paper]

Common and unique brain aging patterns between females and males quantified by large-scale deep learning.

Journal: Human brain mapping

Status: code on request

[24859] doi:10.1002/hbm.70012 [paper, repository]

Generalized models for estimating cerebral lateralisation of young children using functional transcranial Doppler ultrasound.

Journal: Human brain mapping

Authors' code: OSF gw4en (no license), OSF 62m3u (no license), OSF 2n5gj (no license)

Status: code verified, 12 files readable, 16 matches

[24860] doi:10.1002/hbm.70014 [paper, repository]

Atlas-based assessment of hypomyelination: Quantitative MRI in Pelizaeus-Merzbacher disease.

Journal: Human brain mapping

Authors' code: gitlab.ukdd.de/nra/wmi/atlas-based-assessment-of-hypomyelination/code (no license)

Status: dead link

[24861] doi:10.1002/hbm.70015 [paper, repository]

Body mass index associated with respiration predicts motion in resting-state functional magnetic resonance imaging scans.

Journal: Human brain mapping

Authors' code: openpain.org (no license), lejianhuang/Motion-Respiration-BMI (no license)

Status: code verified, 1 file readable, 4 matches

[24862] doi:10.1002/hbm.70016 [paper, data]

Neuropsychiatric symptoms: Risk factor or disease marker? A study of structural imaging biomarkers of Alzheimer's disease and incident cognitive decline.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[24863] doi:10.1002/hbm.70018 [paper, repository]

Comparison between EEG and MEG of static and dynamic resting-state networks.

Journal: Human brain mapping

Authors' code: OHBA-analysis/Cho2024_MEEG_RSN (MIT), Zenodo 6875059 (BSD-3-Clause)

Status: code verified, 153 files readable, 33 matches

[24864] doi:10.1002/hbm.70019 [paper, repository]

The macroscale routing mechanism of structural brain connectivity related to body mass index.

Journal: Human brain mapping

Authors' code: sites.google.com/site/bctnet (no license)

Status: code verified

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