Every paper, by date: page 112

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 112 of 200: 1 September 2024 to 25 August 2024.

Sunday, 1 September 2024 (53 papers, 44 on this page)

[24865] doi:10.1007/s10484-024-09643-4 [paper, repository]

Mu-Suppression Neurofeedback Training Targeting the Mirror Neuron System: A Pilot Study.

Journal: Applied psychophysiology and biofeedback

Authors' code: OSF n5wrk (no license)

Status: code verified

[24866] doi:10.1016/j.xpro.2024.103290 [paper]

Protocol to investigate the gradual selection and deployment of goal-oriented search strategies during unsupervised navigation in mice.

Journal: STAR protocols

Status: code on request

[24867] doi:10.1017/s0033291724001909 [paper, repository]

Genetic and molecular correlates of cortical thickness alterations in adults with obsessive-compulsive disorder: a transcription-neuroimaging association analysis.

Journal: Psychological medicine

Authors' code: frantisekvasa/rotate_parcellation (MIT), BMHLab/AHBAprocessing (no license), SarahMorgan/Morphometric_Similarity_SZ (MIT)

Status: code verified, 395 files readable

[24868] doi:10.1038/s41467-024-51886-6 [paper, repository]

E(n)-Equivariant cartesian tensor message passing interatomic potential.

Journal: Nature communications

Authors' code: bigd4/hotpp (MIT), Zenodo 12952612 (CC-BY-4.0), yongwongxx/hotpp (MIT)

Status: code verified, 164 files readable, 1 match

[24869] doi:10.1038/s41467-024-51956-9 [paper]

Feedforward inhibition of stress by brainstem neuropeptide Y neurons.

Journal: Nature communications

Status: code on request

[24870] doi:10.1038/s41467-024-51996-1 [paper, repository]

Suppression of ferroptosis by vitamin A or radical-trapping antioxidants is essential for neuronal development.

Journal: Nature communications

Authors' code: MendenLab/DEx_StemCells_new (no license)

Status: code verified, 2 files readable, 1 match

[24871] doi:10.1080/19336950.2024.2396346 [paper, data]

Evaluation of four <i>KCNMA1</i> channelopathy variants on BK channel current under Ca<sub>V</sub>1.2 activation.

Journal: Channels (Austin, Tex.)

Status: data only, 1 dataset cited

[24872] doi:10.1093/bib/bbae502 [paper, repository]

A multi-omics study of brain tissue transcription and DNA methylation revealing the genetic pathogenesis of ADHD.

Journal: Briefings in bioinformatics

Authors' code: SMUJK/BIB-24-0876 (no license)

Status: code verified, 6 files readable, 2 matches

[24873] doi:10.1093/bib/bbae587 [paper, repository]

TIPS: a novel pathway-guided joint model for transcriptome-wide association studies.

Journal: Briefings in bioinformatics

Authors' code: nwang123/TIPS (no license)

Status: code verified, 9 files readable, 3 matches

[24874] doi:10.1093/bioinformatics/btae395 [paper, repository]

Learning meaningful representation of single-neuron morphology via large-scale pre-training.

Journal: Bioinformatics (Oxford, England)

Authors' code: yaxuanli-cn/morphrep (no license)

Status: code verified, 160 files readable, 3 matches

[24875] doi:10.1093/bioinformatics/btae400 [paper, repository]

A physics-informed neural SDE network for learning cellular dynamics from time-series scRNA-seq data.

Journal: Bioinformatics (Oxford, England)

Authors' code: allonkleinlab/paper-data (no license)

Status: code verified, 33 files readable

[24876] doi:10.1093/bioinformatics/btae546 [paper, repository]

Bin2cell reconstructs cells from high resolution Visium HD data.

Journal: Bioinformatics (Oxford, England)

Authors' code: Teichlab/gene2probe (MIT)

Status: code verified, 8 files readable

[24877] doi:10.1093/bioinformatics/btae549 [paper, repository]

Scywalker: scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing.

Journal: Bioinformatics (Oxford, England)

Authors' code: derijkp/genomecomb (GPL-3.0)

Status: code verified, 179 files readable, 3 matches

[24878] doi:10.1093/brain/awae205 [paper, repository]

Frontotemporal lobar degeneration targets brain regions linked to expression of recently evolved genes.

Journal: Brain : a journal of neurology

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 2 matches

[24879] doi:10.1093/cercor/bhae353 [paper]

The paradoxical brain: paradoxes impact conflict perspectives through increased neural alignment.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[24880] doi:10.1093/cercor/bhae357 [paper, repository]

Age differences in BOLD modulation to task difficulty as a function of amyloid burden.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 7rsm3 (no license), neurovault.org/collections/zwmwdjjv (no license)

Status: code verified, 1 file readable, 2 matches

[24881] doi:10.1093/cercor/bhae366 [paper]

Provincial and connector qualities of somatosensory brain network hubs in bipolar disorder.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[24882] doi:10.1093/cercor/bhae378 [paper, repository]

A layered microcircuit model of somatosensory cortex with three interneuron types and cell-type-specific short-term plasticity.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 10069507 (GPL-3.0)

Status: code verified

[24883] doi:10.1093/cercor/bhae380 [paper]

The phase coherence of cortical oscillations predicts dynamic changes in perceived visibility.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[24884] doi:10.1093/gbe/evae195 [paper, repository]

Genomic Diversity Illuminates the Environmental Adaptation of Drosophila suzukii.

Journal: Genome biology and evolution

Authors' code: Sfeng666/poolWGS2SNP (MIT), Sfeng666/Dsuz_popgen_GEA (MIT)

Status: code verified, 92 files readable, 24 matches

[24885] doi:10.1093/hmg/ddae111 [paper, repository]

Integration of CTCF loops, methylome, and transcriptome in differentiating LUHMES as a model for imprinting dynamics of the 15q11-q13 locus in human neurons.

Journal: Human molecular genetics

Authors' code: oran-gutierrez-fugon (no license)

Status: code verified

[24886] doi:10.1093/nar/gkae590 [paper, data]

CyCoNP lncRNA establishes cis and trans RNA-RNA interactions to supervise neuron physiology.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[24887] doi:10.1093/neuonc/noae104 [paper, data]

High-throughput neural stem cell-based drug screening identifies S6K1 inhibition as a selective vulnerability in sonic hedgehog-medulloblastoma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[24888] doi:10.1093/scan/nsae059 [paper, data]

How a speaker herds the audience: multibrain neural convergence over time during naturalistic storytelling.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[24889] doi:10.1093/sleep/zsae087 [paper, data]

Daily associations between salivary cortisol and electroencephalographic-assessed sleep: a 15-day intensive longitudinal study.

Journal: Sleep

Status: data only, 1 dataset cited

[24890] doi:10.1097/md.0000000000039726 [paper, data]

Integrating network pharmacology and bioinformatics to explore the mechanism of Xiaojian Zhongtang in treating major depressive disorder: An observational study.

Journal: Medicine

Status: data only, 1 dataset cited

[24891] doi:10.1103/physrevx.14.031050 [paper, data]

Spontaneous Brain Activity Emerges from Pairwise Interactions in the Larval Zebrafish Brain.

Journal: Physical review. X

Status: data only, 1 dataset cited

[24892] doi:10.1111/adb.13434 [paper, repository]

Sex differences in neural networks recruited by frontloaded binge alcohol drinking.

Journal: Addiction biology

Authors' code: cardinger/Detect_Frontloading (GPL-3.0)

Status: code verified, 7 files readable

[24893] doi:10.1111/cns.14905 [paper, data]

Delineating structural and metabolic abnormalities in amygdala and hippocampal subfields for different seizure-onset patterns via stereotactic electroencephalography.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[24894] doi:10.1111/cns.70019 [paper, data]

Betulin ameliorates neuronal apoptosis and oxidative injury via DJ-1/Akt/Nrf2 signaling pathway after subarachnoid hemorrhage.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[24895] doi:10.1111/cns.70030 [paper, data]

β-1,4-Galactosyltransferase 1 protects against cerebral ischemia injury in mice by suppressing ferroptosis via the TAZ/Nrf2/HO-1 signaling pathway.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[24896] doi:10.1111/jcmm.70098 [paper, data]

Inhibition of circular JUN prevents the proliferation and invasion of glioblastoma via miR-3064-IGFBP5 axis.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[24897] doi:10.1121/10.0029023 [paper]

Effects of selective stimulation of apical electrodes on temporal pitch perception by cochlear implant recipients.

Journal: The Journal of the Acoustical Society of America

Status: code on request

[24898] doi:10.1167/jov.24.9.18 [paper, data]

Facial ambiguity and perception: How face-likeness affects breaking time in continuous flash suppression.

Journal: Journal of vision

Status: data only, 1 dataset cited

[24899] doi:10.1167/jov.24.9.4 [paper, repository]

Effects of spatial location on distractor interference.

Journal: Journal of vision

Authors' code: OSF 9jae4 (no license)

Status: code verified, 2 files readable

[24900] doi:10.1167/tvst.13.9.25 [paper, repository]

Glaucoma Rehabilitation Using ElectricAI Transcranial Stimulation (GREAT)-Optimizing Stimulation Protocol for Vision Enhancement Using an RCT.

Journal: Translational vision science & technology

Authors' code: OSF 7m5yf (no license)

Status: code verified, 6 files readable, 2 matches

[24901] doi:10.1182/blood.2023023718 [paper, data]

Low-intensity transcranial focused ultrasound suppresses pain by modulating pain-processing brain circuits.

Journal: Blood

Status: data only, 3 datasets cited

[24902] doi:10.1186/s12974-024-03210-8 [paper, data]

Suppression of the JAK/STAT pathway inhibits neuroinflammation in the line 61-PFF mouse model of Parkinson's disease.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[24903] doi:10.21873/cgp.20465 [paper, data]

Desert Hedgehog Down-regulation Mediates Inhibition of Proliferation by γ-Glutamylcyclotransferase Knockdown in Murine Glioblastoma Stem Cells.

Journal: Cancer genomics & proteomics

Status: data only, 1 dataset cited

[24904] doi:10.31557/apjcp.2024.25.9.3327 [paper, data]

Image Enhancement Using Bidimensional Empirical Mode Decomposition and Morphological Operations for Brain Tumor Detection and Classification.

Journal: Asian Pacific journal of cancer prevention : APJCP

Status: data only, 1 dataset cited

[24905] doi:10.3390/ijms25179514 [paper, repository]

Prediction of Multiple Degenerative Diseases Based on DNA Methylation in a Co-Physiology Mechanisms Perspective.

Journal: International journal of molecular sciences

Authors' code: NENUBioCompute/Mlp-DDR (MIT)

Status: code verified, 4 files readable, 2 matches

[24906] doi:10.3390/ph17091161 [paper, data]

Beta-Myrcene as a Sedative-Hypnotic Component from Lavender Essential Oil in DL-4-Chlorophenylalanine-Induced-Insomnia Mice.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 2 datasets cited

[24907] doi:10.3390/tomography10090105 [paper, repository]

Repurposing the Public BraTS Dataset for Postoperative Brain Tumour Treatment Response Monitoring.

Journal: Tomography (Ann Arbor, Mich.)

Authors' code: DEPICT-RH/postoperative_brain_tumor_segmentation_with_brats (Apache-2.0)

Status: code verified, 3 files readable

[24908] doi:10.4329/wjr.v16.i9.429 [paper]

Cerebral perfusion in patients with unilateral internal carotid artery occlusion by dual post-labeling delays arterial spin labeling imaging.

Journal: World journal of radiology

Status: code on request

Saturday, 31 August 2024 (11 papers)

[24909] doi:10.1002/jcv2.12282 [paper, repository]

Longitudinal associations between youth prosocial behavior and dimensions of psychopathology.

Journal: JCPP advances

Authors' code: VU-BRAINS-lab/Reimann_Prosocial_RICLPM (no license)

Status: code verified, 3 files readable

[24910] doi:10.1016/j.heliyon.2024.e37101 [paper, data]

Identification and analysis correlation between hub genes and immune cell infiltration related to LPS-induced cognitive impairment.

Journal: Heliyon

Status: data only, 1 dataset cited

[24911] doi:10.1016/j.omtm.2024.101331 [paper, repository]

Characterization of drusen formation in a primary porcine tissue culture model of dry AMD.

Journal: Molecular therapy. Methods & clinical development

Authors' code: daniellipinski/RPE_blob_analysis_pipeline (MIT)

Status: code verified, 5 files readable, 1 match

[24912] doi:10.1038/s41467-024-51709-8 [paper, repository]

Highly efficient modeling and optimization of neural fiber responses to electrical stimulation.

Journal: Nature communications

Authors' code: Zenodo 7627427 (MIT), minhajh/cajal (other), minhajh/axonml (other), Zenodo 12752387 (no license), Zenodo 12753671 (no license), wmglab-duke/ascent (GPL-2.0)

Status: code verified, 432 files readable, 11 matches

[24913] doi:10.1038/s41467-024-51818-4 [paper, repository]

Disinhibition enables vocal repertoire expansion after a critical period.

Journal: Nature communications

Authors' code: vallentinlab/HVC_disinhibtion (no license)

Status: code verified, 14 files readable, 1 match

[24914] doi:10.1038/s41467-024-51887-5 [paper, repository]

A framework for the emergence and analysis of language in social learning agents.

Journal: Nature communications

Authors' code: meggl23/multi_agent_language (no license), Zenodo 7885526 (CC-BY-4.0)

Status: code verified, 4 files readable, 13 matches

[24915] doi:10.1038/s41467-024-51919-0 [paper, repository]

Competitive processes shape multi-synapse plasticity along dendritic segments.

Journal: Nature communications

Authors' code: meggl23/MultiSpinemodel (no license), Zenodo 13268453 (CC-BY-4.0), Zenodo 10057156 (CC-BY-4.0), meggl23/SpyDen (no license), Zenodo 12621791 (CC-BY-4.0)

Status: code verified, 30 files readable, 2 matches

[24916] doi:10.1080/07853890.2024.2397568 [paper, data]

Exploring the roles and therapeutic implications of melatonin-mediated KLF6 in the development of intracranial aneurysm.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[24917] doi:10.1186/s12943-024-02091-y [paper, data]

Joint single-cell genetic and transcriptomic analysis reveal pre-malignant SCP-like subclones in human neuroblastoma.

Journal: Molecular cancer

Status: data only, 1 dataset cited

[24918] doi:10.1186/s12974-024-03206-4 [paper, data]

Microglia LILRB4 upregulation reduces brain damage after acute ischemic stroke by limiting CD8⁺ T cell recruitment.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[24919] doi:10.3390/brainsci14090892 [paper, data]

A Two-Hit Approach Inducing Flurothyl Seizures in Fmr1 Knockout Mice Impacts Anxiety and Repetitive Behaviors.

Journal: Brain sciences

Status: data only, 1 dataset cited

Friday, 30 August 2024 (32 papers)

[24920] doi:10.1002/alz.14208 [paper, data]

Bridging the gap: Multi-omics profiling of brain tissue in Alzheimer's disease and older controls in multi-ethnic populations.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 6 datasets cited

[24921] doi:10.1007/s00018-024-05383-0 [paper, data]

Novel C. elegans models of Lewy body disease reveal pathological protein interactions and widespread miRNA dysregulation.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[24922] doi:10.1016/j.heliyon.2024.e37193 [paper]

Causal effect of COVID-19 on longitudinal volumetric changes in subcortical structures: A mendelian randomization study.

Journal: Heliyon

Status: code on request

[24923] doi:10.1016/j.heliyon.2024.e37259 [paper, data]

Single-cell transcriptomics reveals the cellular identity of a novel progenitor population crucial for murine neural tube closure.

Journal: Heliyon

Status: data only, 1 dataset cited

[24924] doi:10.1016/j.isci.2024.110800 [paper, repository]

Overexpression of the schizophrenia risk gene C4 in PV cells drives sex-dependent behavioral deficits and circuit dysfunction.

Journal: iScience

Authors' code: OSF je38k (no license), CruzMartinLab (no license), CruzMartinLab/REVEALS (no license), cruzmartinlab/pv-mc4_project (no license)

Status: code verified, 69 files readable, 15 matches

[24925] doi:10.1016/j.isci.2024.110851 [paper, data]

eIF2B localization and its regulation during the integrated stress response is cell-type specific.

Journal: iScience

Status: code on request, 1 dataset cited

[24926] doi:10.1016/j.neo.2024.101042 [paper, repository]

PDGF-BB overexpression in p53 null oligodendrocyte progenitors increases H3K27me3 and induces transcriptional changes which favor proliferation.

Journal: Neoplasia (New York, N.Y.)

Authors' code: dhuang-ASRC/BBp53n_Submission (no license)

Status: code verified, 1 file readable, 2 matches

[24927] doi:10.1016/j.xgen.2024.100642 [paper, repository]

ABCA7-dependent induction of neuropeptide Y is required for synaptic resilience in Alzheimer's disease through BDNF/NGFR signaling.

Journal: Cell genomics

Authors' code: mathyslab7/ROSMAP_snRNAseq_PFC (no license)

Status: code verified, 186 files readable, 1 match

[24928] doi:10.1038/s41380-024-02726-y [paper, repository]

A neurometabolic mechanism involving dmPFC/dACC lactate in physical effort-based decision-making.

Journal: Molecular psychiatry

Authors' code: NicolasClairis/physical_and_mental_E_task (GPL-3.0)

Status: code verified, 50 files readable, 6 matches

[24929] doi:10.1038/s41398-024-03016-5 [paper]

The interaction of oxytocin and nicotine addiction on psychosocial stress: an fMRI study.

Journal: Translational psychiatry

Status: code on request

[24930] doi:10.1038/s41398-024-03070-z [paper, repository]

Shared and distinct cortical morphometric alterations in five neuropsychiatric symptoms of Parkinson's disease.

Journal: Translational psychiatry

Authors' code: enigma-toolbox.readthedocs.io (no license)

Status: code verified

[24931] doi:10.1038/s41467-024-50765-4 [paper, repository]

DNA methylation governs the sensitivity of repeats to restriction by the HUSH-MORC2 corepressor.

Journal: Nature communications

Authors' code: NinoPandiloski/DNA-methylation-governs-the-sensitivity-of-repeats-to-restriction-by-the-HUSH-MORC2-corepressor (no license)

Status: empty repository, 1 file readable

[24932] doi:10.1038/s41598-024-69402-7 [paper, repository]

Enhancing source code classification effectiveness via prompt learning incorporating knowledge features.

Journal: Scientific reports

Authors' code: BIT-ENGD/codepromptclass (no license), dmlc/xgboost (Apache-2.0), ntdxyg/text-classify-based-pytorch (Apache-2.0), huggingface.co/transformers/v3.0.2 (no license)

Status: code verified, 1,187 files readable

[24933] doi:10.1038/s41598-024-70893-7 [paper, data]

Unveiling disulfidptosis-related biomarkers and predicting drugs in Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24934] doi:10.1038/s41598-024-71118-7 [paper, repository]

CTNet: a convolutional transformer network for EEG-based motor imagery classification.

Journal: Scientific reports

Authors' code: snailpt/CTNet (MIT)

Status: code verified, 14 files readable, 3 matches

[24935] doi:10.1038/s41598-024-71132-9 [paper, data]

TYROBP serve as potential immune-related signature genes in the acute phase of intracerebral hemorrhage.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24936] doi:10.1038/s41598-024-71219-3 [paper, data]

Resting-state frontal electroencephalography (EEG) biomarkers for detecting the severity of chronic neuropathic pain.

Journal: Scientific reports

Status: data only, 1 dataset cited

[24937] doi:10.1073/pnas.2403326121 [paper, data]

A long noncoding RNA at the <i>cortex</i> locus controls adaptive coloration in butterflies.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[24938] doi:10.1073/pnas.2405602121 [paper, data]

Individual gaze shapes diverging neural representations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[24939] doi:10.1093/braincomms/fcae295 [paper, repository]

Patterns of cerebral damage in multiple sclerosis and aquaporin-4 antibody-positive neuromyelitis optica spectrum disorders-major differences revealed by non-conventional imaging.

Journal: Brain communications

Authors' code: nencki-lobi/NAWA (no license)

Status: code verified, 68 files readable, 12 matches

[24940] doi:10.1101/2024.08.30.610458 [paper, data]

Social complexity during early development has long-term effects on neuroplasticity in the social decision-making network

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[24941] doi:10.1126/sciadv.adp0138 [paper, repository]

In vivo optogenetic manipulations of endogenous proteins reveal spatiotemporal roles of microtubule and kinesin in dendrite patterning.

Journal: Science advances

Authors' code: Zenodo 11585494 (CC-BY-4.0)

Status: code verified, 30 files readable

[24942] doi:10.1162/imag_a_00277 [paper, data]

Distinct neural networks of task engagement and choice response in moral, risky, and ambiguous decision-making: An ALE meta-analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[24943] doi:10.1162/imag_a_00278 [paper, repository]

Incidental learning of predictive temporal context within cortical representations of visual shape.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: cognitive-biology/DLDA (LGPL-2.1)

Status: code verified, 18 files readable

[24944] doi:10.1186/s13011-024-00621-x [paper, data]

Neurocognitive function and medical care utilization in Veterans treated for substance use disorder.

Journal: Substance abuse treatment, prevention, and policy

Status: data only, 1 dataset cited

[24945] doi:10.1186/s13326-024-00317-y [paper, data]

An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology.

Journal: Journal of biomedical semantics

Status: data only, 1 dataset cited

[24946] doi:10.3389/fnhum.2024.1406786 [paper, repository]

Next move in movement disorders: neuroimaging protocols for hyperkinetic movement disorders.

Journal: Frontiers in human neuroscience

Authors' code: jrdalenberg/PETBrainPreprocessing (Apache-2.0), neuropower/neuropower-core (MIT)

Status: code verified, 23 files readable, 5 matches

[24947] doi:10.3390/brainsci14090880 [paper, data]

Classifying Unconscious, Psychedelic, and Neuropsychiatric Brain States with Functional Connectivity, Graph Theory, and Cortical Gradient Analysis.

Journal: Brain sciences

Status: data only, 1 dataset cited

[24948] doi:10.3390/brainsci14090883 [paper, data]

Ongoing Dynamics of Peak Alpha Frequency Characterize Hypnotic Induction in Highly Hypnotic-Susceptible Individuals.

Journal: Brain sciences

Status: data only, 1 dataset cited

[24949] doi:10.3390/jcm13175154 [paper, data]

Symptom Persistence Relates to Volume and Asymmetry of the Limbic System after Mild Traumatic Brain Injury.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[24950] doi:10.7554/elife.85742 [paper, repository]

Quantitative modeling of the emergence of macroscopic grid-like representations.

Journal: eLife

Authors' code: ikhwankhalid/grid_bold (GPL-3.0)

Status: code verified, 34 files readable, 13 matches

[24951] doi:10.7554/elife.97908 [paper, data]

Adverse impact of female reproductive signaling on age-dependent neurodegeneration after mild head trauma in <i>Drosophila</i>.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 29 August 2024 (38 papers)

[24952] doi:10.1002/advs.202400584 [paper, data]

Loss of Smek1 Induces Tauopathy and Triggers Neurodegeneration by Regulating Microtubule Stability.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[24953] doi:10.1007/s10334-024-01197-0 [paper]

SAD: semi-supervised automatic detection of BOLD activations in high temporal resolution fMRI data.

Journal: Magma (New York, N.Y.)

Status: code on request

[24954] doi:10.1007/s11357-024-01324-8 [paper, data]

Resting-state neural dynamics changes in older adults with post-COVID syndrome and the modulatory effect of cognitive training and sex.

Journal: GeroScience

Status: data only, 1 dataset cited

[24955] doi:10.1007/s11571-024-10166-1 [paper, repository]

Estimating the energy of dissipative neural systems.

Journal: Cognitive neurodynamics

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), allavailablepubliccode/Energy (no license)

Status: code verified, 60 files readable, 2 matches

[24956] doi:10.1016/j.heliyon.2024.e37130 [paper, repository]

Chinese acupuncture: A potential treatment for autism rat model via improving synaptic function.

Journal: Heliyon

Authors' code: tanghaibao/Goatools (BSD-2-Clause)

Status: code verified, 136 files readable, 1 match

[24957] doi:10.1016/j.isci.2024.110817 [paper, repository]

Influence of intraocular and blood pressure on brain volumes: Observational and Mendelian randomization analyses.

Journal: iScience

Authors' code: ebi.ac.uk/gwas/studies (no license), n-mounier/MRlap (GPL-2.0)

Status: code verified, 11 files readable

[24958] doi:10.1016/j.patter.2024.101047 [paper, repository]

Generating realistic neurophysiological time series with denoising diffusion probabilistic models.

Journal: Patterns (New York, N.Y.)

Authors' code: mackelab/neural_timeseries_diffusion (MIT), dandi:000055 (no license), neurotycho.org/anesthesia-task (no license), kaggle.com/competitions/inria-bci-challenge (no license), Zenodo 12759366 (CC-BY-4.0)

Status: code verified, 52 files readable, 12 matches

[24959] doi:10.1016/j.patter.2024.101048 [paper, repository]

Transcriptomic mapping of the 5-HT receptor landscape.

Journal: Patterns (New York, N.Y.)

Authors' code: rdef654875678597657-5-ht-transcriptomics.hf.space (no license), RobertoDF/Transcriptomics-5-HT (CC-BY-4.0), figshare 26325505 (CC-BY-4.0), alleninstitute/abc_atlas_access (BSD-2-Clause)

Status: code verified, 35 files readable, 1 match

[24960] doi:10.1016/j.xpro.2024.103280 [paper]

Protocol for generating human cortical organoids enriched in outer radial glia by guided differentiation.

Journal: STAR protocols

Status: code on request

[24961] doi:10.1038/s41467-024-51676-0 [paper, data]

ATAXIN-2 intermediate-length polyglutamine expansions elicit ALS-associated metabolic and immune phenotypes.

Journal: Nature communications

Status: data only, 1 dataset cited

[24962] doi:10.1038/s41467-024-51822-8 [paper, repository]

Direct stimulation of anterior insula and ventromedial prefrontal cortex disrupts economic choices.

Journal: Nature communications

Authors' code: OSF 3jaes (no license)

Status: code verified, 1 file readable, 1 match

[24963] doi:10.1038/s41467-024-51825-5 [paper, repository]

Neural populations in macaque anterior cingulate cortex encode social image identities.

Journal: Nature communications

Authors' code: figshare 25447075 (CC-BY-4.0)

Status: code verified, 6 files readable

[24964] doi:10.1038/s41593-024-01743-y [paper, repository]

Characteristics of blood-brain barrier heterogeneity between brain regions revealed by profiling vascular and perivascular cells.

Journal: Nature neuroscience

Authors' code: gulabneuro/scRNAseq-ligand_receptor (no license)

Status: code verified, 2 files readable, 2 matches

[24965] doi:10.1038/s41598-024-70469-5 [paper, repository]

ConIQA: A deep learning method for perceptual image quality assessment with limited data.

Journal: Scientific reports

Authors' code: UNC-optics (no license)

Status: code verified

[24966] doi:10.1038/s41598-024-71174-z [paper]

Twinned neuroimaging analysis contributes to improving the classification of young people with autism spectrum disorder.

Journal: Scientific reports

Status: code on request

[24967] doi:10.1038/s42003-024-06587-7 [paper, repository]

Age-related neural changes underlying long-term recognition of musical sequences.

Journal: Communications biology

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0), Zenodo 12734383 (CC-BY-4.0), leonardob92/meg_aging_bach (no license)

Status: code verified, 186 files readable, 21 matches

[24968] doi:10.1073/pnas.2404042121 [paper, repository]

Sex chromosomes and hormones independently influence healthy brain development but act similarly after cranial radiation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10655474 (CC-BY-4.0), mouse-imaging-centre.github.io/rminc (no license)

Status: code verified, 1 file readable

[24969] doi:10.1111/dmcn.16080 [paper, repository]

Genetic investigations in cerebral palsy.

Journal: Developmental medicine and child neurology

Authors' code: panelapp.genomicsengland.co.uk (no license)

Status: code verified

[24970] doi:10.1111/psyp.14678 [paper, repository]

The effect of performance contingent reward prospects flexibly adapts to more versus less specific task goals.

Journal: Psychophysiology

Authors' code: OSF n26u9 (no license)

Status: code verified, 11 files readable, 7 matches

[24971] doi:10.1162/imag_a_00272 [paper, repository]

Test-retest reliability of EEG microstate metrics for evaluating noise reductions in simultaneous EEG-fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: atr-iine/joint_decorrelation_for_phase-locked_artifact_attenuation (MIT)

Status: code verified, 5 files readable, 2 matches

[24972] doi:10.1162/imag_a_00279 [paper, repository]

Signatures of time interval reproduction in the human electroencephalogram (EEG).

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 3vtg9 (no license)

Status: code verified, 10 files readable, 1 match

[24973] doi:10.1162/imag_a_00280 [paper]

A comparison of fMRI presurgical mapping techniques with intraoperative brain mapping-based validation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[24974] doi:10.1172/jci177384 [paper, data]

B cell-based therapy produces antibodies that inhibit glioblastoma growth.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[24975] doi:10.1186/s12859-024-05874-8 [paper, repository]

CNVDeep: deep association of copy number variants with neurocognitive disorders.

Journal: BMC bioinformatics

Authors' code: hamidrokny/SNATCNV (GPL-3.0), git.dml.ir/z_rahaie/dcnv (no license), autism.mindspec.org/autdb (no license), ebi.ac.uk/ega/studies (no license), ncbi.nlm.nih.gov/dbvar/studies (no license)

Status: code verified, 6 files readable

[24976] doi:10.1186/s12864-024-10723-2 [paper, repository]

Discovery of NRG1-VII: the myeloid-derived class of NRG1.

Journal: BMC genomics

Authors' code: wellslab/NRG1-VII_Amplicons (no license)

Status: empty repository, 1 file readable

[24977] doi:10.1186/s12877-024-05289-3 [paper, repository]

Common molecular and pathophysiological underpinnings of delirium and Alzheimer's disease: molecular signatures and therapeutic indications.

Journal: BMC geriatrics

Authors' code: scidavis.sourceforge.net (no license)

Status: code verified

[24978] doi:10.1186/s13024-024-00751-7 [paper, data]

Identification of a specific APOE transcript and functional elements associated with Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[24979] doi:10.1371/journal.pdig.0000595 [paper, data]

Digital assessment of cognitive-affective biases related to mental health.

Journal: PLOS digital health

Status: data only, 1 dataset cited

[24980] doi:10.1371/journal.pone.0309344 [paper, data]

Association between seated trunk control and cortical sensorimotor white matter brain changes in patients with chronic low back pain.

Journal: PloS one

Status: data only, 1 dataset cited

[24981] doi:10.1523/eneuro.0291-24.2024 [paper, repository]

Microtubule-Stabilizer Epothilone B Delays Anesthetic-Induced Unconsciousness in Rats.

Journal: eNeuro

Authors' code: Zenodo 23167802 (apgl-v3), sparkainlp-x/quantum-claims-passport (AGPL-3.0), Zenodo 23167801 (apgl-v3)

Status: code verified, 12 files readable

[24982] doi:10.1523/eneuro.0304-23.2024 [paper, repository]

KineWheel-DeepLabCut Automated Paw Annotation Using Alternating Stroboscopic UV and White Light Illumination.

Journal: eNeuro

Authors' code: WinterLab-Berlin/KineWheelSystem (GPL-3.0), Zenodo 7586688 (CC-BY-4.0)

Status: code verified, 7 files readable, 1 match

[24983] doi:10.3389/fncom.2024.1293279 [paper, repository]

Quantifying network behavior in the rat prefrontal cortex.

Journal: Frontiers in computational neuroscience

Authors' code: Zenodo 7933346 (MIT), Zenodo 12737517 (MIT), Zenodo 7933345 (MIT)

Status: code verified

[24984] doi:10.3389/fncom.2024.1454529 [paper, repository]

Classification of epileptic seizures in EEG data based on iterative gated graph convolution network.

Journal: Frontiers in computational neuroscience

Authors' code: freesui1984/IGGCN_ (no license)

Status: code verified, 25 files readable, 9 matches

[24985] doi:10.3389/fnins.2024.1390250 [paper, repository]

Target engagement of the subgenual anterior cingulate cortex with transcranial temporal interference stimulation in major depressive disorder: a protocol for a randomized sham-controlled trial.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 7926293 (LGPL-2.1), me-ica/tedana (LGPL-2.1)

Status: code verified, 134 files readable

[24986] doi:10.3389/fnsyn.2024.1433977 [paper, repository]

The short-term plasticity of VIP interneurons in motor cortex.

Journal: Frontiers in synaptic neuroscience

Authors' code: pj-sjostrom/MultiPatch (GPL-3.0), pj-sjostrom/qMorph (GPL-3.0), neuralml/STPinference (no license)

Status: code verified, 126 files readable, 1 match

[24987] doi:10.3390/cancers16172999 [paper]

Intensive Interdisciplinary Rehabilitation in the Pediatric Hematology/Oncology Setting: Feasibility and Perceived Benefit of the Acute Neurological Injury Service.

Journal: Cancers

Status: code on request

[24988] doi:10.3390/e26090737 [paper]

An Information-Geometric Formulation of Pattern Separation and Evaluation of Existing Indices.

Journal: Entropy (Basel, Switzerland)

Status: code on request

[24989] doi:10.7717/peerj.17896 [paper, repository]

Consumer-priced wearable sensors combined with deep learning can be used to accurately predict ground reaction forces during various treadmill running conditions.

Journal: PeerJ

Authors' code: JoshCarter97/LSTM_GRF_Estimation (MIT)

Status: code verified, 7 files readable, 5 matches

Wednesday, 28 August 2024 (51 papers)

[24990] doi:10.1002/alz.14098 [paper, repository]

Blood DNA methylomic signatures associated with CSF biomarkers of Alzheimer's disease in the EMIF-AD study.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: UoE-Dementia-Genomics/EMIF_Biomarkers_Methylation (no license)

Status: empty repository, 1 file readable

[24991] doi:10.1007/s00018-024-05400-2 [paper]

Sensory nerves drive migration of dental pulp stem cells via the CGRP-Ramp1 axis in pulp repair.

Journal: Cellular and molecular life sciences : CMLS

Status: data only

[24992] doi:10.1007/s12035-024-04427-7 [paper, data]

Lagging Brain Gene Expression Patterns of Drosophila melanogaster Young Adult Males Confound Comparisons Between Sexes.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[24993] doi:10.1016/j.heliyon.2024.e36913 [paper, data]

The influence of form on motion signal processing in the ventral intraparietal area of macaque monkeys.

Journal: Heliyon

Status: data only, 1 dataset cited

[24994] doi:10.1016/j.heliyon.2024.e37043 [paper, data]

Comparison of doses received from non-contrast enhanced brain CT examinations between two CT scanners.

Journal: Heliyon

Status: data only, 1 dataset cited

[24995] doi:10.1016/j.jbc.2024.107725 [paper, data]

Interaction between the TBC1D24 TLDc domain and the KIBRA C2 domain is disrupted by two epilepsy-associated TBC1D24 missense variants.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[24996] doi:10.1016/j.nbd.2024.106653 [paper, repository]

Neurovascular mechanisms of cognitive aging: Sex-related differences in the average progression of arteriosclerosis, white matter atrophy, and cognitive decline.

Journal: Neurobiology of disease

Authors' code: OSF q3sxj (no license)

Status: code verified, 8 files readable, 3 matches

[24997] doi:10.1038/s41380-024-02712-4 [paper]

Exaggerated frontoparietal control over cognitive effort-based decision-making in young women with anorexia nervosa.

Journal: Molecular psychiatry

Status: code on request

[24998] doi:10.1038/s41467-024-50505-8 [paper, repository]

Distinct roles of monkey OFC-subcortical pathways in adaptive behavior.

Journal: Nature communications

Authors' code: minamimoto-lab/2023-Oyama-OFC (no license)

Status: code verified, 3 files readable

[24999] doi:10.1038/s41467-024-51372-z [paper, repository]

Modelling variability and heterogeneity of EMT scenarios highlights nuclear positioning and protrusions as main drivers of extrusion.

Journal: Nature communications

Authors' code: SteffenPL/sEMTor.jl (MIT), codeocean:7746744 (no license)

Status: code verified, 33 files readable, 2 matches

[25000] doi:10.1038/s41467-024-51627-9 [paper, repository]

Endocranial development in non-avian dinosaurs reveals an ontogenetic brain trajectory distinct from extant archosaurs.

Journal: Nature communications

Authors' code: Zenodo 11194015 (MIT)

Status: code verified, 1 file readable, 4 matches

[25001] doi:10.1038/s41467-024-51821-9 [paper, repository]

Developmental signals control chromosome segregation fidelity during pluripotency and neurogenesis by modulating replicative stress.

Journal: Nature communications

Authors' code: vincentvbatenburg/scEdU-seq (no license)

Status: code verified, 9 files readable, 1 match

[25002] doi:10.1038/s41586-024-07851-w [paper, repository]

Cooperative thalamocortical circuit mechanism for sensory prediction errors.

Journal: Nature

Authors' code: Zenodo 11403111 (CC-BY-4.0)

Status: code verified, 17 files readable, 3 matches

[25003] doi:10.1038/s41586-024-07863-6 [paper, repository]

Sympathetic neuropeptide Y protects from obesity by sustaining thermogenic fat.

Journal: Nature

Authors' code: PLAVRVSO/scRNA-Seq-analysis-of-BAT-SVF (no license)

Status: code verified, 2 files readable, 2 matches

[25004] doi:10.1038/s41586-024-07867-2 [paper, repository]

A population code for spatial representation in the zebrafish telencephalon.

Journal: Nature

Authors' code: RoLiLab/fish_place_cell_Yang_2024 (no license)

Status: code verified, 150 files readable, 11 matches

[25005] doi:10.1038/s41586-024-07873-4 [paper, data]

Fibrin drives thromboinflammation and neuropathology in COVID-19.

Journal: Nature

Status: data only, 4 datasets cited

[25006] doi:10.1038/s41586-024-07890-3 [paper, repository]

Mating proximity blinds threat perception.

Journal: Nature

Authors' code: lczl64/Cazale-Debat-Scheunemann-et-al (GPL-3.0), jthueringer/NosaAnalysis (MIT), Zenodo 22948572 (CC-BY-4.0), Zenodo 23249792 (CC-BY-4.0)

Status: code verified, 116 files readable, 2 matches

[25007] doi:10.1038/s41593-024-01738-9 [paper, repository]

Activity of nested neural circuits drives different courtship songs in Drosophila.

Journal: Nature neuroscience

Authors' code: Zenodo 11493396 (CC-BY-4.0), davidsternlab/shiozaki_2024 (no license)

Status: code verified, 198 files readable, 5 matches

[25008] doi:10.1038/s41597-024-03775-2 [paper, repository]

High-resolution segmentations of the hypothalamus and its subregions for training of segmentation models.

Journal: Scientific data

Authors' code: liviamarodrigues/hsynex (Apache-2.0)

Status: code verified, 62 files readable, 2 matches

[25009] doi:10.1038/s41598-024-69199-5 [paper, data]

Multi-scaling allometry in human development, mammalian morphology, and tree growth.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25010] doi:10.1038/s41598-024-70629-7 [paper, data]

The differential expression of adipose tissue genes in short, medium and long-term periods after bariatric surgery.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25011] doi:10.1038/s42003-024-06752-y [paper, data]

Polymodal K⁺ channel modulation contributes to dual analgesic and anti-inflammatory actions of traditional botanical medicines.

Journal: Communications biology

Status: data only, 1 dataset cited

[25012] doi:10.1088/1741-2552/ad663c [paper, repository]

Iterative alignment discovery of speech-associated neural activity.

Journal: Journal of neural engineering

Authors' code: cronelab/IAD-DTW (no license)

Status: dead link

[25013] doi:10.1088/1741-2552/ad6e19 [paper]

Neural subspaces of imagined movements in parietal cortex remain stable over several years in humans.

Journal: Journal of neural engineering

Status: code on request

[25014] doi:10.1093/pnasnexus/pgae370 [paper, data]

Eye tracking is more sensitive than skin conductance response in detecting mild environmental stimuli.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[25015] doi:10.1098/rsif.2024.0143 [paper, repository]

Neuronal network dynamics in the posterodorsal amygdala: shaping reproductive hormone pulsatility.

Journal: Journal of the Royal Society, Interface

Authors' code: Zenodo 12639963 (CC-BY-4.0)

Status: code verified, 21 files readable, 6 matches

[25016] doi:10.1098/rspb.2024.0591 [paper, data]

Day-night gene expression reveals circadian gene <i>disco</i> as a candidate for diel-niche evolution in moths.

Journal: Proceedings. Biological sciences

Status: data only, 2 datasets cited

[25017] doi:10.1101/2024.08.27.609682 [paper, data]

NEBULA101: an open dataset for the study of language aptitude in behaviour, brain structure and function

Journal: bioRxiv (preprint)

Status: data only, 10 datasets cited

[25018] doi:10.1126/sciadv.adj2547 [paper, repository]

Cl<sup>-</sup>-dependent amplification of excitatory synaptic potentials at distal dendrites revealed by voltage imaging.

Journal: Science advances

Authors' code: nb.biophys.kyoto-u.ac.jp/model (no license), supp:PMC11352850/sciadv.adj2547_supplementary_code.zip (no license)

Status: code verified, 16 files readable, 3 matches

[25019] doi:10.1126/sciadv.adk4062 [paper, repository]

Top-down modulation of the retinal code via histaminergic neurons of the hypothalamus.

Journal: Science advances

Authors' code: Zenodo 11198169 (CC-BY-4.0)

Status: code verified

[25020] doi:10.1126/sciadv.ado2733 [paper, repository]

The uniqueness of human vulnerability to brain aging in great ape evolution.

Journal: Science advances

Authors' code: viko18/GreatApe_Aging (GPL-3.0), kaurao/opnmfR (no license)

Status: code verified, 34 files readable, 10 matches

[25021] doi:10.1126/sciadv.ado5424 [paper, data]

Developmental DNA demethylation is a determinant of neural stem cell identity and gliogenic competence.

Journal: Science advances

Status: data only, 1 dataset cited

[25022] doi:10.1152/jn.00421.2023 [paper, repository]

Bidirectional generative adversarial representation learning for natural stimulus synthesis.

Journal: Journal of neurophysiology

Authors' code: kozlovlabcode/biwavegan (no license)

Status: code verified, 5 files readable, 3 matches

[25023] doi:10.1162/imag_a_00275 [paper, repository]

Limitations of 2-dimensional line-scan MRI for directly measuring neural activity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: joshmw/emri (no license), justingardner/mrTools (other), justingardner/gru (no license), Zenodo 1299497 (other-open), justingardner/mgl (GPL-2.0)

Status: code verified, 1,950 files readable, 4 matches

[25024] doi:10.1186/s12964-024-01803-7 [paper, data]

The role of miR-155-5p in inflammation and mechanical loading during intervertebral disc degeneration.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[25025] doi:10.1186/s13059-024-03375-8 [paper, data]

NERD-seq: a novel approach of Nanopore direct RNA sequencing that expands representation of non-coding RNAs.

Journal: Genome biology

Status: data only, 3 datasets cited

[25026] doi:10.1186/s40478-024-01848-2 [paper, data]

Systematic transcriptomic analysis of childhood medulloblastoma identifies N6-methyladenosine-dependent lncRNA signatures associated with molecular subtype, immune cell infiltration, and prognosis.

Journal: Acta neuropathologica communications

Status: data only, 4 datasets cited

[25027] doi:10.1186/s40478-024-01851-7 [paper, data]

A deep phenotyping study in mouse and iPSC models to understand the role of oligodendroglia in optic neuropathy in Wolfram syndrome.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[25028] doi:10.1186/s40478-024-01853-5 [paper, data]

Deciphering glial contributions to CSF1R-related disorder via single-nuclear transcriptomic profiling: a case study.

Journal: Acta neuropathologica communications

Status: data only, 5 datasets cited

[25029] doi:10.12688/f1000research.145889.2 [paper, data]

Poweromin X Ten, a polyherbal formulation improves male sexual function: <i>In vivo</i> and network pharmacology study.

Journal: F1000Research

Status: data only, 3 datasets cited

[25030] doi:10.1371/journal.pone.0307906 [paper, data]

Seizure onset and offset pattern determine the entrainment of the cortex and substantia nigra in the nonhuman primate model of focal temporal lobe seizures.

Journal: PloS one

Status: data only, 1 dataset cited

[25031] doi:10.1523/eneuro.0128-24.2024 [paper]

The White Matter Integrity and Functional Connection Differences of Fornix (Cres)/Stria Terminalis in Individuals with Mild Cognitive Impairment Induced by Occupational Aluminum Exposure.

Journal: eNeuro

Status: code on request

[25032] doi:10.1523/eneuro.0554-23.2024 [paper, repository]

Assessing Cross-Contamination in Spike-Sorted Electrophysiology Data.

Journal: eNeuro

Authors' code: economolab/DCISIv (MIT)

Status: code verified, 7 files readable, 2 matches

[25033] doi:10.1523/jneurosci.1777-23.2024 [paper, repository]

Motor Cortex Latent Dynamics Encode Spatial and Temporal Arm Movement Parameters Independently.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Humphries-Lab/Motor_Cortex_Simultaneous_Coding (MIT)

Status: code verified, 57 files readable, 14 matches

[25034] doi:10.3390/brainsci14090871 [paper, repository]

Machine Learning Predicts Phenoconversion from Polysomnography in Isolated REM Sleep Behavior Disorder.

Journal: Brain sciences

Authors' code: macesari/predictRBD (MIT)

Status: code verified, 12 files readable, 3 matches

[25035] doi:10.3390/diagnostics14171888 [paper]

Technological Frontiers in Brain Cancer: A Systematic Review and Meta-Analysis of Hyperspectral Imaging in Computer-Aided Diagnosis Systems.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

[25036] doi:10.3390/ijms25179330 [paper, repository]

Diet-Induced Obesity Induces Transcriptomic Changes in Neuroimmunometabolic-Related Genes in the Striatum and Olfactory Bulb.

Journal: International journal of molecular sciences

Authors' code: OSF kw4v6 (no license)

Status: code verified, 5 files readable

[25037] doi:10.7554/elife.87634 [paper, repository]

Differential increase of hippocampal subfield volume after socio-affective mental training relates to reductions in diurnal cortisol.

Journal: eLife

Authors' code: CNG-LAB/valk_hippocampal_change (MIT)

Status: empty repository, 2 files readable

[25038] doi:10.7554/elife.88805 [paper, repository]

Dynamic control of sequential retrieval speed in networks with heterogeneous learning rules.

Journal: eLife

Authors' code: maxgillett/dynamic_speed_control (MIT)

Status: code verified, 36 files readable, 1 match

[25039] doi:10.7554/elife.93978 [paper, repository]

Feedback inhibition by a descending GABAergic neuron regulates timing of escape behavior in <i>Drosophila</i> larvae.

Journal: eLife

Authors' code: jiayi2019/2024_elife (MIT), Jiayi2019/2-photon-analysis (MIT), Jiayi2019 (no license)

Status: code verified, 4 files readable

[25040] doi:10.7554/elife.96534 [paper, repository]

Sex-dependent, lateralized engagement of anterior insular cortex inputs to the dorsolateral striatum in binge alcohol drinking.

Journal: eLife

Authors' code: dlhagger/AIC_Fiber_Photometry (MIT)

Status: code verified, 3 files readable, 1 match

Tuesday, 27 August 2024 (23 papers)

[25041] doi:10.1002/alz.14194 [paper, data]

Alzheimer's disease CSF biomarkers correlate with early pathology and alterations in neuronal and glial gene expression.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[25042] doi:10.1007/s00439-024-02700-2 [paper, repository]

Integrative genomic analyses identify neuroblastoma risk genes involved in neuronal differentiation.

Journal: Human genetics

Authors' code: hakyimlab/MetaXcan (MIT)

Status: code verified, 124 files readable

[25043] doi:10.1007/s11357-024-01305-x [paper, repository]

Electrical brain networks before and after transcranial pulsed shockwave stimulation in Alzheimer's patients.

Journal: GeroScience

Authors' code: AJQuinn/cfc (no license), supp:PMC11872817/11357_2024_1305_MOESM1_ESM.m (no license), supp:PMC11872817/11357_2024_1305_MOESM2_ESM.m (no license)

Status: code verified, 56 files readable, 2 matches

[25044] doi:10.1016/j.celrep.2024.114672 [paper]

Modulation of cortical representations of sensory and contextual information underlies aversive associative learning.

Journal: Cell reports

Status: code on request

[25045] doi:10.1016/j.omtn.2024.102316 [paper, data]

Targeting heterozygous dominant negative variant of <i>KCNA2</i> using Gapmer ASO for the treatment of drug-resistant epilepsy.

Journal: Molecular therapy. Nucleic acids

Status: code on request, 1 dataset cited

[25046] doi:10.1016/j.ymthe.2024.08.022 [paper, data]

A small TAT-TrkB peptide prevents BDNF receptor cleavage and restores synaptic physiology in Alzheimer's disease.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 1 dataset cited

[25047] doi:10.1038/s41380-024-02699-y [paper, repository]

Markers of positive affect and brain state synchrony discriminate melancholic from non-melancholic depression using naturalistic stimuli.

Journal: Molecular psychiatry

Authors' code: clinical-brain-networks/HMM-Melancholia (no license)

Status: code verified, 518 files readable, 4 matches

[25048] doi:10.1038/s41398-024-03056-x [paper, repository]

Identifying novel proteins underlying bipolar disorder via integrating pQTLs of the plasma, CSF, and brain with GWAS summary data.

Journal: Translational psychiatry

Authors' code: MRCIEU/TwoSampleMR (other), chr1swallace/coloc (no license)

Status: code verified, 114 files readable, 3 matches

[25049] doi:10.1038/s41598-024-70627-9 [paper, repository]

Accurate low and high grade glioma classification using free water eliminated diffusion tensor metrics and ensemble machine learning.

Journal: Scientific reports

Authors' code: mvgolub/FW-DTI-Beltrami (BSD-3-Clause)

Status: code verified, 13 files readable, 4 matches

[25050] doi:10.1038/s44318-024-00176-4 [paper, repository]

A cell state-specific metabolic vulnerability to GPX4-dependent ferroptosis in glioblastoma.

Journal: The EMBO journal

Authors' code: simslab/cluster_diffex2018 (MIT), simslab (no license)

Status: code verified, 10 files readable

[25051] doi:10.1073/pnas.2401604121 [paper, repository]

Nonreciprocal synchronization in embryonic oscillator ensembles.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: laurentjutrasdube/Nonreciprocal_synchronization_in_embryonic_oscillator_ensembles (GPL-3.0)

Status: code verified, 5 files readable, 1 match

[25052] doi:10.1073/pnas.2410564121 [paper, data]

N-acetyltransferase 10 mediates cognitive dysfunction through the acetylation of GABA&lt;sub&gt;B&lt;/sub&gt;R1 mRNA in sepsis-associated encephalopathy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25053] doi:10.1159/000540976 [paper, data]

Reconsidering Neurogenetic Indication in the Human Brain: Broad Expression of Doublecortin Transcript in the Hippocampal and Cortical Cell Populations.

Journal: Cells, tissues, organs

Status: data only, 1 dataset cited

[25054] doi:10.1242/dev.202390 [paper, repository]

A multi-layered integrative analysis reveals a cholesterol metabolic program in outer radial glia with implications for human brain evolution.

Journal: Development (Cambridge, England)

Authors' code: jjaa-mp/MultiLayered_IndirectNeuro (no license)

Status: code verified, 64 files readable, 10 matches

[25055] doi:10.1242/dmm.050407 [paper, repository]

Reduced connexin-43 expression, slow conduction and repolarisation dispersion in a model of hypertrophic cardiomyopathy.

Journal: Disease models & mechanisms

Authors' code: jackatta/estimated-marginal-means (MIT), Zenodo 12747473 (CC-BY-4.0)

Status: code verified, 14 files readable, 2 matches

[25056] doi:10.1371/journal.pone.0306493 [paper, data]

RETRACTED: Automated brain tumor diagnostics: Empowering neuro-oncology with deep learning-based MRI image analysis.

Journal: PloS one

Status: data only, 1 dataset cited

[25057] doi:10.1523/eneuro.0135-24.2024 [paper, repository]

Level-Dependent Subcortical Electroencephalography Responses to Continuous Speech.

Journal: eNeuro

Authors' code: jpkulasingham/LD_ABR_TRF (MIT)

Status: code verified, 10 files readable, 3 matches

[25058] doi:10.3389/fnut.2024.1422253 [paper, repository]

Enhancing pediatric attention-deficit hyperactivity disorder treatment: exploring the gut microbiota effects of French maritime pine bark extract and methylphenidate intervention.

Journal: Frontiers in nutrition

Authors' code: Swittouck/tidyamplicons (no license)

Status: code verified, 24 files readable, 2 matches

[25059] doi:10.3390/brainsci14090864 [paper, repository]

A Learning Dendritic Neuron-Based Motion Direction Detective System and Its Application to Grayscale Images.

Journal: Brain sciences

Authors' code: RurIIIIIkitesumimasen/Dendritic_GS_Motion (no license)

Status: code verified, 9 files readable, 2 matches

[25060] doi:10.3390/jcm13175077 [paper, repository]

Behavioral and Electrophysiological Markers of Attention Fluctuations in Children with Hypersomnolence.

Journal: Journal of clinical medicine

Authors' code: rbouet/Tool_BLAST_EEG (no license)

Status: code verified, 13 files readable, 1 match

[25061] doi:10.7554/elife.88762 [paper, repository]

Auditory confounds can drive online effects of transcranial ultrasonic stimulation in humans.

Journal: eLife

Authors' code: Zenodo 6517599 (other-open), Zenodo 8374148 (other-open), benjamin-kop/tus-tms-clamp (CC-BY-4.0), benjamin-kop/auditory-masking-stimuli (CC0-1.0)

Status: code verified, 8 files readable

[25062] doi:10.7554/elife.90454 [paper, data]

Interrogating basal ganglia circuit function in people with Parkinson's disease and dystonia.

Journal: eLife

Status: data only, 1 dataset cited

[25063] doi:10.7554/elife.95628 [paper, repository]

A single-cell atlas of the miracidium larva of &lt;i&gt;Schistosoma mansoni&lt;/i&gt; reveals cell types, developmental pathways, and tissue architecture.

Journal: eLife

Authors' code: tessatten/singlecell-miracidia (MIT)

Status: code verified, 29 files readable, 5 matches

Monday, 26 August 2024 (19 papers)

[25064] doi:10.1016/j.ebiom.2024.105314 [paper]

A comprehensive assessment of the association between common drugs and psychiatric disorders using Mendelian randomization and real-world pharmacovigilance database.

Journal: EBioMedicine

Status: code on request

[25065] doi:10.1016/j.isci.2024.110835 [paper, repository]

Unveiling differential gene co-expression networks and its effects on levodopa-induced dyskinesia.

Journal: iScience

Authors' code: tati-souz/RNA-Seq-data-analysis (no license), hidelab/diffcoexp (no license)

Status: code verified, 13 files readable, 3 matches

[25066] doi:10.1016/j.mcpdig.2024.08.005 [paper, repository]

Color Fundus Photography and Deep Learning Applications in Alzheimer Disease.

Journal: Mayo Clinic proceedings. Digital health

Authors' code: jacobgil/pytorch-grad-cam (MIT)

Status: code verified, 60 files readable, 2 matches

[25067] doi:10.1016/j.omtn.2024.102314 [paper]

Simple improvements in vector design afford substantial gains in AAV delivery of aggregation-slowing Aβ variants.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[25068] doi:10.1038/s41591-024-03209-x [paper, repository]

Brain clocks capture diversity and disparities in aging and dementia across geographically diverse populations.

Journal: Nature medicine

Authors' code: OSF 8zjf4 (no license)

Status: code verified

[25069] doi:10.1038/s41592-024-02380-w [paper, repository]

Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics.

Journal: Nature methods

Authors' code: axelalmet/flowsig (MIT), axelalmet/FlowSigAnalysis_2023 (no license)

Status: code verified, 78 files readable, 19 matches

[25070] doi:10.1038/s41593-024-01737-w [paper, repository]

Proteomic changes in Alzheimer's disease associated with progressive Aβ plaque and tau tangle pathologies.

Journal: Nature neuroscience

Authors' code: alexapichet/NatureNeuro_2024_proteomics (MIT)

Status: code verified, 3 files readable

[25071] doi:10.1038/s41598-024-70647-5 [paper, repository]

Enhanced machine learning approaches for OSA patient screening: model development and validation study.

Journal: Scientific reports

Authors' code: Zhangyixiang2023/slumbot (no license)

Status: empty repository

[25072] doi:10.1073/pnas.2319459121 [paper, repository]

Breaking (musical) boundaries by investigating brain dynamics of event segmentation during real-life music-listening.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10865354 (CC-BY-NC-4.0)

Status: code verified, 16 files readable, 1 match

[25073] doi:10.1073/pnas.2402723121 [paper, repository]

Functional near-infrared spectroscopy: A novel tool for detecting consciousness after acute severe brain injury.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: TheOwenLab (no license), TheOwenLab/fNIRS_ICU_PNAS- (no license)

Status: code verified, 524 files readable, 5 matches

[25074] doi:10.1111/acel.14325 [paper, data]

Pathogenic TDP-43 accelerates the generation of toxic exon1 HTT in Huntington's disease knock-in mice.

Journal: Aging cell

Status: data only, 1 dataset cited

[25075] doi:10.1186/s12915-024-01979-x [paper, data]

Foxg1 regulates translation of neocortical neuronal genes, including the main NMDA receptor subunit gene, Grin1.

Journal: BMC biology

Status: data only, 2 datasets cited

[25076] doi:10.1186/s12916-024-03542-5 [paper, data]

Antenatal steroids elicited neurodegenerative-associated transcriptional changes in the hippocampus of preterm fetal sheep independent of lung maturation.

Journal: BMC medicine

Status: data only, 1 dataset cited

[25077] doi:10.1186/s13024-024-00746-4 [paper, data]

Pathological characteristics of axons and alterations of proteomic and lipidomic profiles in midbrain dopaminergic neurodegeneration induced by WDR45-deficiency.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[25078] doi:10.1371/journal.pbio.3002660 [paper, data]

Fast-spiking interneuron detonation drives high-fidelity inhibition in the olfactory bulb.

Journal: PLoS biology

Status: data only, 1 dataset cited

[25079] doi:10.1371/journal.pcbi.1012356 [paper, repository]

Regression convolutional neural network models implicate peripheral immune regulatory variants in the predisposition to Alzheimer's disease.

Journal: PLoS computational biology

Authors' code: ENCODE-DCC/atac-seq-pipeline (MIT), pfenninglab/ml-prototypes (no license), daphne.compbio.cs.cmu.edu/files/eramamur (no license), pfenninglab/ad_variants (no license)

Status: code verified, 222 files readable, 19 matches

[25080] doi:10.1371/journal.pone.0309204 [paper, repository]

Advancing 7T perfusion imaging by pulsed arterial spin labeling: Using a parallel transmit coil for enhanced labeling robustness and temporal SNR.

Journal: PloS one

Authors' code: icaroafoliveira/ASL_7T_pTx_scripts (no license)

Status: code verified, 3 files readable

[25081] doi:10.3389/fncom.2024.1434421 [paper, data]

Deep learning for detecting prenatal alcohol exposure in pediatric brain MRI: a transfer learning approach with explainability insights.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[25082] doi:10.3390/brainsci14090860 [paper, repository]

Classification of Known and Unknown Study Items in a Memory Task Using Single-Trial Event-Related Potentials and Convolutional Neural Networks.

Journal: Brain sciences

Authors' code: joardemu85/jspsych_tasks (no license), joardemu85/AMT_Code (no license)

Status: code verified, 47 files readable, 14 matches

Sunday, 25 August 2024 (7 papers, 6 on this page)

[25083] doi:10.1038/s41419-024-07010-z [paper, data]

A novel protein encoded by circCOPA inhibits the malignant phenotype of glioblastoma cells and increases their sensitivity to temozolomide by disrupting the NONO-SFPQ complex.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[25084] doi:10.1038/s41467-024-51817-5 [paper]

An essential role for the latero-medial secondary visual cortex in the acquisition and retention of visual perceptual learning in mice.

Journal: Nature communications

Status: code on request

[25085] doi:10.1038/s42003-024-06719-z [paper, repository]

A ventromedial visual cortical 'Where' stream to the human hippocampus for spatial scenes revealed with magnetoencephalography.

Journal: Communications biology

Authors' code: decolab/gec (CC-BY-NC-4.0)

Status: code verified, 6 files readable

[25086] doi:10.1038/s42003-024-06723-3 [paper, data]

Activity-dependent transcriptional programs in memory regulate motor recovery after stroke.

Journal: Communications biology

Status: code on request, 1 dataset cited

[25087] doi:10.3390/ijms25179211 [paper, data]

Elucidating the Functional Roles of Long Non-Coding RNAs in Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[25088] doi:10.3390/ijms25179220 [paper, repository]

The GBA1 K198E Variant Is Associated with Suppression of Glucocerebrosidase Activity, Autophagy Impairment, Oxidative Stress, Mitochondrial Damage, and Apoptosis in Skin Fibroblasts.

Journal: International journal of molecular sciences

Authors' code: sokrypton/colabfold (MIT)

Status: code verified, 74 files readable

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