Every paper, by date: page 113

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 113 of 200: 25 August 2024 to 14 August 2024.

Sunday, 25 August 2024 (7 papers, 1 on this page)

[25089] doi:10.3390/ijms25179223 [paper, data]

Multi-Omics Integration Analysis Pinpoint Proteins Influencing Brain Structure and Function: Toward Drug Targets and Neuroimaging Biomarkers for Neuropsychiatric Disorders.

Journal: International journal of molecular sciences

Status: data only, 3 datasets cited

Saturday, 24 August 2024 (13 papers)

[25090] doi:10.1007/s10334-024-01198-z [paper]

Improving the lesion appearance on FLAIR images synthetized from quantitative MRI: a fast, hybrid approach.

Journal: Magma (New York, N.Y.)

Status: code on request

[25091] doi:10.1007/s10339-024-01223-y [paper, repository]

Emotional text messages affect the early processing of emoticons depending on their emotional congruence: evidence from the N170 and EPN event related potentials.

Journal: Cognitive processing

Authors' code: ericcfields/fmut (BSD-3-Clause)

Status: code verified, 45 files readable, 1 match

[25092] doi:10.1007/s11060-024-04812-1 [paper]

Metabolic signatures derived from whole-brain MR-spectroscopy identify early tumor progression in high-grade gliomas using machine learning.

Journal: Journal of neuro-oncology

Status: code on request

[25093] doi:10.1016/j.celrep.2024.114666 [paper]

The RNA-binding protein EIF4A3 promotes axon development by direct control of the cytoskeleton.

Journal: Cell reports

Status: code on request

[25094] doi:10.1016/j.heliyon.2024.e36759 [paper, data]

Cataract and glaucoma detection based on Transfer Learning using MobileNet.

Journal: Heliyon

Status: data only, 1 dataset cited

[25095] doi:10.1016/j.nicl.2024.103660 [paper, repository]

Multimodal analysis of disease onset in Alzheimer's disease using Connectome, Molecular, and genetics data.

Journal: NeuroImage. Clinical

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause)

Status: code verified, 129 files readable, 2 matches

[25096] doi:10.1038/s41398-024-03038-z [paper, repository]

Emotion perception through the nose: how olfactory emotional cues modulate the perception of neutral facial expressions in affective disorders.

Journal: Translational psychiatry

Authors' code: OSF 3nb4a (no license)

Status: code verified, 11 files readable, 4 matches

[25097] doi:10.1038/s41467-024-51401-x [paper, repository]

Slow ramping emerges from spontaneous fluctuations in spiking neural networks.

Journal: Nature communications

Authors' code: jgavenas42/SlowRampingSpikingNetwork (no license)

Status: code verified, 59 files readable, 13 matches

[25098] doi:10.1038/s41467-024-51750-7 [paper, repository]

An output-null signature of inertial load in motor cortex.

Journal: Nature communications

Authors' code: machenslab/dPCA (MIT)

Status: code verified, 22 files readable, 4 matches

[25099] doi:10.1038/s41539-024-00266-2 [paper]

Abnormal brain activation during speech perception and production in children and adults with reading difficulty.

Journal: NPJ science of learning

Status: code on request

[25100] doi:10.1038/s41597-024-03774-3 [paper, repository]

A benchmark for 2D foetal brain ultrasound analysis.

Journal: Scientific data

Authors' code: marianocabezas/fetal-brain (GPL-3.0)

Status: code verified, 19 files readable, 5 matches

[25101] doi:10.1038/s42003-024-06751-z [paper, data]

Cell-specific expression of key mitochondrial enzymes limits OXPHOS in astrocytes of the adult human neocortex and hippocampal formation.

Journal: Communications biology

Status: data only, 2 datasets cited

[25102] doi:10.1038/s44271-024-00128-y [paper, repository]

Independent replications reveal anterior and posterior cingulate cortex activation underlying state anxiety-attenuated face encoding.

Journal: Communications psychology

Authors' code: OSF 6952a (no license)

Status: code verified, 6 files readable, 12 matches

Friday, 23 August 2024 (26 papers)

[25103] doi:10.1016/j.bpsgos.2024.100384 [paper, data]

Modulation of Posterior Default Mode Network Activity During Interoceptive Attention and Relation to Mindfulness.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[25104] doi:10.1016/j.bpsgos.2024.100385 [paper, data]

Resilience to Chronic Stress Is Characterized by Circadian Brain-Liver Coordination.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[25105] doi:10.1016/j.ebiom.2024.105305 [paper, repository]

A multi-modal framework improves prediction of tissue-specific gene expression from a surrogate tissue.

Journal: EBioMedicine

Authors' code: zdangm/MOTPEC (no license)

Status: code verified, 12 files readable, 7 matches

[25106] doi:10.1016/j.heliyon.2024.e36837 [paper, data]

Identification and analysis of key immunity-related genes in experimental ischemic stroke.

Journal: Heliyon

Status: data only, 1 dataset cited

[25107] doi:10.1016/j.isci.2024.110678 [paper]

Mapping structural distribution and gating-property impacts of disease-associated mutations in voltage-gated sodium channels.

Journal: iScience

Status: code on request

[25108] doi:10.1016/j.isci.2024.110802 [paper, data]

Brain-to-brain coupling forecasts future joint action outcomes.

Journal: iScience

Status: code on request, 1 dataset cited

[25109] doi:10.1016/j.nicl.2024.103657 [paper, repository]

Diverging functional connectivity timescales: Capturing distinct aspects of cognitive performance in early psychosis.

Journal: NeuroImage. Clinical

Authors' code: yetianmed/subcortex (MIT)

Status: code verified, 46 files readable, 2 matches

[25110] doi:10.1038/s41467-024-50904-x [paper, repository]

Inferring histology-associated gene expression gradients in spatial transcriptomic studies.

Journal: Nature communications

Authors' code: heilandd/SPTCR_seq_code (no license), theMILOlab/SPATA2 (gnu), Zenodo 22040374 (MIT)

Status: code verified, 96 files readable, 40 matches

[25111] doi:10.1038/s41467-024-50970-1 [paper, data]

High-sensitive sensory neurons exacerbate rosacea-like dermatitis in mice by activating γδ T cells directly.

Journal: Nature communications

Status: code on request, 1 dataset cited

[25112] doi:10.1038/s41467-024-51459-7 [paper, repository]

Relating sex-bias in human cortical and hippocampal microstructure to sex hormones.

Journal: Nature communications

Authors' code: braincharter/vasculature (no license), svennikue/sex-hormones-x-cortical-structure (no license)

Status: code verified, 38 files readable, 11 matches

[25113] doi:10.1038/s41467-024-51609-x [paper, data]

Crossmodal sensory neurons based on high-performance flexible memristors for human-machine in-sensor computing system.

Journal: Nature communications

Status: code on request, 1 dataset cited

[25114] doi:10.1038/s41598-024-70414-6 [paper, data]

Effects of a 5-HT₄ receptor antagonist in the caudate nucleus on the performance of macaques in a delayed reward task.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25115] doi:10.1038/s41598-024-70508-1 [paper, data]

Evaluation of perceived urgency from single-trial EEG data elicited by upper-body vibration feedback using deep learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25116] doi:10.1038/s41598-024-70748-1 [paper]

The use of artificial neural networks in studying the progression of glaucoma.

Journal: Scientific reports

Status: code on request

[25117] doi:10.1038/s42003-024-06673-w [paper]

Disrupted brain functional connectivity as early signature in cognitively healthy individuals with pathological CSF amyloid/tau.

Journal: Communications biology

Status: code on request

[25118] doi:10.1038/s42003-024-06743-z [paper, data]

High-dimensional cortical signals reveal rich bimodal and working memory-like representations among S1 neuron populations.

Journal: Communications biology

Status: data only, 1 dataset cited

[25119] doi:10.1073/pnas.2322422121 [paper, repository]

Phosphatidylinositol-3-phosphate mediates Arc capsid secretion through the multivesicular body pathway.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: kritikamehta1794/Diffusion-coefficient_CVE (no license), kritikamehta1794/Diffusioncoefficient_CVE (no license)

Status: code verified, 1 file readable

[25120] doi:10.1073/pnas.2400082121 [paper, repository]

High-level cognition is supported by information-rich but compressible brain activity patterns.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: brainiak.org (no license), ContextLab/pca_paper (MIT)

Status: code verified, 9 files readable, 6 matches

[25121] doi:10.1093/biomethods/bpae062 [paper, repository]

Advanced image generation for cancer using diffusion models.

Journal: Biology methods & protocols

Authors' code: shivamshrirao/diffusers (Apache-2.0), akiyamasho/stylegan3-training-notebook (no license), huggingface.co/kidderlab/brain_normal_horizontal_mri (no license), huggingface.co/kidderlab/brain_normal_saggital_mri (no license), huggingface.co/kidderlab/brain_pituitary_tumor_horizontal_mri (no license), huggingface.co/kidderlab/brain_pituitary_tumor_saggital (no license), huggingface.co/kidderlab/chest_x-ray (no license), huggingface.co/kidderlab/glioma_saggital_mri (no license), KidderLab/Medical_Imaging (no license)

Status: code verified, 448 files readable, 2 matches

[25122] doi:10.1111/bpa.13301 [paper, repository]

Deep learning-based segmentation in MRI-(immuno)histological examination of myelin and axonal damage in normal-appearing white matter and white matter hyperintensities.

Journal: Brain pathology (Zurich, Switzerland)

Authors' code: matthijsluijten/wmh_tool (no license)

Status: code verified, 15 files readable

[25123] doi:10.1126/sciadv.adi0302 [paper, repository]

Sexually dimorphic computational histopathological signatures prognostic of overall survival in high-grade gliomas via deep learning.

Journal: Science advances

Authors' code: IDiA-Lab/HGG_OS_Prediction (no license)

Status: code verified, 5 files readable, 5 matches

[25124] doi:10.1159/000541102 [paper, data]

The Glutamine-Glutamate Cycle Contributes to Behavioral Feminization in Female Rats.

Journal: Neuroendocrinology

Status: data only, 1 dataset cited

[25125] doi:10.1186/s12868-024-00882-z [paper, repository]

Ectopically expressed rhodopsin is not sensitive to X-rays.

Journal: BMC neuroscience

Authors' code: figshare 174480 (CC-BY-4.0)

Status: empty repository

[25126] doi:10.1186/s40478-024-01850-8 [paper, data]

Oral nicotinamide provides robust, dose-dependent structural and metabolic neuroprotection of retinal ganglion cells in experimental glaucoma.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[25127] doi:10.1364/boe.528275 [paper, repository]

Naturalistic approach to investigate the neural correlates of a laundry cycle with and without fragrance.

Journal: Biomedical optics express

Authors' code: lpollonini/qt-nirs (CC-BY-NC-SA-4.0)

Status: code verified, 12 files readable, 1 match

[25128] doi:10.3390/cells13171408 [paper, data]

Comparing Viral Vectors and Fate Mapping Approaches for Astrocyte-to-Neuron Reprogramming in the Injured Mouse Cerebral Cortex.

Journal: Cells

Status: data only, 1 dataset cited

Thursday, 22 August 2024 (34 papers)

[25129] doi:10.1007/s12672-024-01223-6 [paper]

A bibliometric analysis of radiation-induced brain injury: a research of the literature from 1998 to 2023.

Journal: Discover oncology

Status: code on request

[25130] doi:10.1016/j.cell.2024.07.041 [paper, repository]

Thyroid hormone remodels cortex to coordinate body-wide metabolism and exploration.

Journal: Cell

Authors' code: bernardosabatinilab/hochbaum_thyroid_2024 (no license)

Status: code verified, 19 files readable, 15 matches

[25131] doi:10.1016/j.celrep.2024.114669 [paper]

Cells and circuits for amygdala neuroplasticity in the transition to chronic pain.

Journal: Cell reports

Status: code on request

[25132] doi:10.1016/j.heliyon.2024.e36728 [paper, repository]

Prediction of future dementia among patients with mild cognitive impairment (MCI) by integrating multimodal clinical data.

Journal: Heliyon

Authors' code: GauravPandeyLab/TADPOLE_EI (no license)

Status: code verified, 21 files readable, 6 matches

[25133] doi:10.1016/j.isci.2024.110753 [paper, repository]

The direct and indirect pathways of the basal ganglia antagonistically influence cortical activity and perceptual decisions.

Journal: iScience

Authors' code: EnnyvanBeest/vanBeest_iScience2024 (GPL-3.0), petersaj/AP_histology (GPL-3.0)

Status: code verified, 44 files readable, 9 matches

[25134] doi:10.1016/j.isci.2024.110776 [paper, repository]

An inhibitory acetylcholine receptor gates context-dependent mechanosensory processing in <i>C. elegans</i>.

Journal: iScience

Authors' code: leiferlab/kumar-molecular-mechanism (GPL-3.0)

Status: code verified, 255 files readable, 1 match

[25135] doi:10.1016/j.jbc.2024.107698 [paper, data]

miR-449a mediated repression of the cell cycle machinery prevents neuronal apoptosis.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[25136] doi:10.1016/j.neuroimage.2024.120794 [paper]

Quantitative gradient recalled echo (qGRE) MRI enables in vivo measurement of pre-atrophic neurodegeneration in a mouse model of Alzheimer's disease.

Journal: NeuroImage

Status: code on request

[25137] doi:10.1016/j.neuroimage.2024.120806 [paper, repository]

Separating group- and individual-level brain signatures in the newborn functional connectome: A deep learning approach.

Journal: NeuroImage

Authors' code: libilab/rsfMRI-VAE (no license)

Status: code verified, 137 files readable, 1 match

[25138] doi:10.1016/j.stemcr.2024.07.008 [paper, repository]

Cross-site reproducibility of human cortical organoids reveals consistent cell type composition and architecture.

Journal: Stem cell reports

Authors' code: mroseglass/hCO-CrossSiteReproducibility (no license)

Status: code verified, 45 files readable, 12 matches

[25139] doi:10.1038/s41467-024-51070-w [paper, repository]

Stage-dependent role of interhemispheric pathway for motor recovery in primates.

Journal: Nature communications

Authors' code: figshare 26013223 (CC-BY-4.0)

Status: code verified, 4 files readable

[25140] doi:10.1038/s41467-024-51216-w [paper, repository]

Mutant huntingtin impairs neurodevelopment in human brain organoids through CHCHD2-mediated neurometabolic failure.

Journal: Nature communications

Authors' code: rajewsky-lab/Huntington_midbrain_organoids (no license), Scaramir/HD_colocalization (no license), Zenodo 12548500 (CC-BY-4.0), Zenodo 12594012 (CC-BY-4.0)

Status: code verified, 18 files readable, 6 matches

[25141] doi:10.1038/s41467-024-51310-z [paper, data]

Loss of symmetric cell division of apical neural progenitors drives DENND5A-related developmental and epileptic encephalopathy.

Journal: Nature communications

Status: data only, 1 dataset cited

[25142] doi:10.1038/s41531-024-00763-6 [paper, data]

Neuroprotection of low dose carbon monoxide in Parkinson's disease models commensurate with the reduced risk of Parkinson's among smokers.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[25143] doi:10.1038/s41539-024-00262-6 [paper, repository]

Integrating stereotypes and factual evidence in interpersonal communication.

Journal: NPJ science of learning

Authors' code: OSF 3fre2 (no license)

Status: empty repository

[25144] doi:10.1038/s41598-024-69630-x [paper, repository]

Cortical cognitive processing during reading captured using functional-near infrared spectroscopy.

Journal: Scientific reports

Authors' code: emotive-computing/EML-localizer (no license)

Status: dead link

[25145] doi:10.1038/s42003-024-06586-8 [paper, data]

Arc and BDNF mediated effects of hippocampal astrocytic glutamate uptake blockade on spatial memory stages.

Journal: Communications biology

Status: data only, 1 dataset cited

[25146] doi:10.1038/s44318-024-00206-1 [paper, repository]

Targeting SWI/SNF ATPases reduces neuroblastoma cell plasticity.

Journal: The EMBO journal

Authors' code: homer.ucsd.edu/homer/ngs (no license)

Status: code verified

[25147] doi:10.1063/5.0214745 [paper, repository]

Electrophysiological features of cortical 3D networks are deeply modulated by scaffold properties.

Journal: APL bioengineering

Authors' code: Zenodo 13259912 (CC-BY-4.0), screenneuropharm/3dneuronalscaffolds (MIT)

Status: code verified, 140 files readable, 10 matches

[25148] doi:10.1073/pnas.2318841121 [paper, repository]

Correlated variability and its attentional modulation depend on anatomical connectivity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: BriggsNeuro (no license)

Status: code verified

[25149] doi:10.1080/15592294.2024.2392050 [paper, repository]

Genetic architecture of epigenetic cortical clock age in brain tissue from older individuals: alterations in <i>CD46</i> and other loci.

Journal: Epigenetics

Authors' code: gemmashireby/CorticalCloc (no license)

Status: dead link

[25150] doi:10.1093/braincomms/fcae284 [paper, repository]

Interictal intracranial EEG asymmetry lateralizes temporal lobe epilepsy.

Journal: Brain communications

Authors' code: penn-cnt/cnt_tle_laterality (no license)

Status: code verified, 209 files readable, 31 matches

[25151] doi:10.1101/2024.08.22.609103 [paper, repository]

The long-range gene regulatory landscape of cerebellar granule neuron progenitors

Journal: bioRxiv (preprint)

Authors' code: sims-lab/GranuleProgenitor_pcHiC (no license)

Status: dead link

[25152] doi:10.1155/2024/6111483 [paper, data]

Implications of Convolutional Neural Network for Brain MRI Image Classification to Identify Alzheimer's Disease.

Journal: Parkinson's disease

Status: data only, 1 dataset cited

[25153] doi:10.1162/imag_a_00273 [paper, repository]

Reliability of task-based fMRI in the dorsal horn of the human spinal cord.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: eippertlab/pain-reliability-spinalcord (MIT), Zenodo 10475479 (CC-BY-4.0), eippertlab/thermode-positioning-device (CC-BY-4.0)

Status: code verified, 70 files readable, 23 matches

[25154] doi:10.1186/s12859-024-05852-0 [paper, repository]

TIANA: transcription factors cooperativity inference analysis with neural attention.

Journal: BMC bioinformatics

Authors' code: rzzli/TIANA (MIT)

Status: code verified, 14 files readable, 1 match

[25155] doi:10.1186/s13229-024-00614-4 [paper]

Mapping neural correlates of biological motion perception in autistic children using high-density diffuse optical tomography.

Journal: Molecular autism

Status: code on request

[25156] doi:10.1212/wnl.0000000000209744 [paper, repository]

Sex-Dependent Effects of Cardiometabolic Health and <i>APOE4</i> on Brain Age: A Longitudinal Cohort Study.

Journal: Neurology

Authors' code: Zenodo 3476365 (other-open), james-cole/brainager (LGPL-3.0)

Status: code verified, 9 files readable, 2 matches

[25157] doi:10.1242/jeb.246670 [paper, repository]

Spatial resolution and optical sensitivity in the compound eyes of two common European wasps, Vespula germanica and Vespula vulgaris.

Journal: The Journal of experimental biology

Authors' code: insectvision/Facet (Apache-2.0)

Status: code verified, 12 files readable

[25158] doi:10.1371/journal.pbio.3002723 [paper, repository]

Somatic nuclear mitochondrial DNA insertions are prevalent in the human brain and accumulate over time in fibroblasts.

Journal: PLoS biology

Authors' code: mills-lab/numts-and-aging-in-fibroblasts-and-brains (no license), cu-ctcn/mtDNA (no license), mills-lab/dinumt (MIT), Zenodo 11625510 (CC-BY-4.0)

Status: code verified, 29 files readable, 6 matches

[25159] doi:10.1371/journal.pcbi.1012355 [paper, repository]

Signatures of hierarchical temporal processing in the mouse visual system.

Journal: PLoS computational biology

Authors' code: Priesemann-Group/mouse_visual_timescales (no license)

Status: code verified, 108 files readable, 7 matches

[25160] doi:10.1371/journal.pone.0306538 [paper, data]

Altered brain functional connectivity in patients with resistance to thyroid hormone ß.

Journal: PloS one

Status: data only, 1 dataset cited

[25161] doi:10.3390/bios14080406 [paper, repository]

MLS-Net: An Automatic Sleep Stage Classifier Utilizing Multimodal Physiological Signals in Mice.

Journal: Biosensors

Authors' code: kaggle.com/models/jiangchengyong (no license)

Status: dead link

[25162] doi:10.7554/elife.89936 [paper, repository]

Task-specific invariant representation in auditory cortex.

Journal: eLife

Authors' code: lbhb/baphy (no license), crheller/eLife2024_Task (MIT)

Status: code verified, 2,027 files readable, 6 matches

Wednesday, 21 August 2024 (30 papers)

[25163] doi:10.1007/s00701-024-06234-4 [paper]

Influence of preoperative embolisation on resection of brain arteriovenous malformations: cohort study.

Journal: Acta neurochirurgica

Status: code on request

[25164] doi:10.1007/s12035-024-04422-y [paper, repository]

Brain Proteome Profiling Reveals Common and Divergent Signatures in Parkinson's Disease, Multiple System Atrophy, and Progressive Supranuclear Palsy.

Journal: Molecular neurobiology

Authors' code: fifdick/DPE_parkinsonisms_brain (no license)

Status: code verified, 5 files readable, 7 matches

[25165] doi:10.1016/j.cub.2024.07.087 [paper, repository]

Dynamic predictive templates in perception.

Journal: Current biology : CB

Authors' code: veithweilnhammer/predictive_templates (no license), Zenodo 13306545 (CC-BY-4.0)

Status: code verified, 3 files readable, 11 matches

[25166] doi:10.1016/j.isci.2024.110736 [paper, repository]

Simultaneous interneuron labeling reveals cell type-specific, population-level interactions in cortex.

Journal: iScience

Authors' code: j-friedrich/OASIS (GPL-3.0), Zenodo 11371947 (CC-BY-4.0), Zenodo 11371949 (CC-BY-4.0), runyanlab/clustering-pipeline (no license), runyanlab/potterbassirunyan2024 (MIT)

Status: code verified, 302 files readable, 13 matches

[25167] doi:10.1016/j.molcel.2024.08.007 [paper, repository]

Members of an array of zinc-finger proteins specify distinct Hox chromatin boundaries.

Journal: Molecular cell

Authors' code: Zenodo 5550459 (MIT), igordot/sns (MIT)

Status: code verified, 142 files readable, 2 matches

[25168] doi:10.1038/s41398-024-03017-4 [paper, repository]

Actomyosin-mediated inhibition of synaptic vesicle release under CB<sub>1</sub>R activation.

Journal: Translational psychiatry

Authors' code: mahmcfadd/mcfadd-storm (no license)

Status: code verified, 8 files readable

[25169] doi:10.1038/s41467-024-51185-0 [paper, data]

In-depth analysis of transcriptomes in ovarian cortical follicles from children and adults reveals interfollicular heterogeneity.

Journal: Nature communications

Status: data only, 1 dataset cited

[25170] doi:10.1038/s41467-024-51389-4 [paper, repository]

A population of Insula neurons encodes for social preference only after acute social isolation in mice.

Journal: Nature communications

Authors' code: Zenodo 8087692 (no license)

Status: code verified

[25171] doi:10.1038/s41467-024-51391-w [paper, repository]

Egocentric neural representation of geometric vertex in the retrosplenial cortex.

Journal: Nature communications

Authors' code: SNU-NCL/EgocentricVertexCell (MIT)

Status: code verified, 4 files readable, 11 matches

[25172] doi:10.1038/s41467-024-51543-y [paper, data]

Predictions enable top-down pattern separation in the macaque face-processing hierarchy.

Journal: Nature communications

Status: data only, 1 dataset cited

[25173] doi:10.1038/s41467-024-51582-5 [paper, repository]

Replay-triggered brain-wide activation in humans.

Journal: Nature communications

Authors' code: liu_lab/EEG-fMRI-replay (CC-BY-SA-4.0)

Status: code verified, 32 files readable, 18 matches

[25174] doi:10.1038/s41467-024-51593-2 [paper, data]

Interference haptic stimulation and consistent quantitative tactility in transparent electrotactile screen with pressure-sensitive transistors.

Journal: Nature communications

Status: data only, 1 dataset cited

[25175] doi:10.1038/s41586-024-07848-5 [paper, repository]

Thermal infrared directs host-seeking behaviour in Aedes aegypti mosquitoes.

Journal: Nature

Authors' code: Craig-Montell-Lab/Chandel_DeBeaubien_2023 (GPL-3.0)

Status: code verified, 41 files readable, 2 matches

[25176] doi:10.1038/s41586-024-07853-8 [paper, repository]

Oligodendrocytes and myelin limit neuronal plasticity in visual cortex.

Journal: Nature

Authors' code: mapmanager.net (no license), Zenodo 12170661 (CC-BY-4.0), mpstryker/ISI (no license)

Status: code verified, 113 files readable, 6 matches

[25177] doi:10.1038/s41598-024-70367-w [paper, repository]

Real-time estimation of the optimal coil placement in transcranial magnetic stimulation using multi-task deep learning.

Journal: Scientific reports

Authors' code: risc-mi/tms-coil-optimization (no license)

Status: code verified, 4 files readable, 7 matches

[25178] doi:10.1038/s41598-024-70432-4 [paper, repository]

Automatic prediction of obstructive sleep apnea in patients with temporomandibular disorder based on multidata and machine learning.

Journal: Scientific reports

Authors' code: SeonggwangJeon/Automatic-Prediction-of-Obstructive-Sleep-Apnea-in-Patients-with-Temporomandibular-Disorder (MIT)

Status: code verified, 15 files readable, 2 matches

[25179] doi:10.1038/s44321-024-00111-4 [paper]

Restoration of defective oxidative phosphorylation to a subset of neurons prevents mitochondrial encephalopathy.

Journal: EMBO molecular medicine

Status: data only

[25180] doi:10.1093/iob/obae032 [paper, repository]

Embodied Computational Evolution: A Model for Investigating Randomness and the Evolution of Morphological Complexity.

Journal: Integrative organismal biology (Oxford, England)

Authors' code: josh-hm/EvoDevo-Modeling (BSD)

Status: code verified, 1,403 files readable

[25181] doi:10.1098/rsob.240115 [paper, data]

A feather star is born: embryonic development and nervous system organization in the crinoid <i>Antedon mediterranea</i>.

Journal: Open biology

Status: data only, 2 datasets cited

[25182] doi:10.1098/rsos.240207 [paper, repository]

Sensory feedback and central neuronal interactions in mouse locomotion.

Journal: Royal Society open science

Authors' code: Zenodo 10655333 (MIT)

Status: code verified, 3 files readable

[25183] doi:10.1186/s40708-024-00234-x [paper, repository]

HyEpiSeiD: a hybrid convolutional neural network and gated recurrent unit model for epileptic seizure detection from electroencephalogram signals.

Journal: Brain informatics

Authors' code: rajcodex/Epilepsy-Detection (MIT)

Status: code verified, 4 files readable, 2 matches

[25184] doi:10.1371/journal.pcbi.1012342 [paper, repository]

A comprehensive data-driven model of cat primary visual cortex.

Journal: PLoS computational biology

Authors' code: CSNG-MFF/mozaik (CECILL-2.1), csng-mff/mozaik-models (MIT), v1model.arkheia.org/simruns (no license)

Status: code verified, 219 files readable, 12 matches

[25185] doi:10.3389/fnagi.2024.1424312 [paper, data]

Metabolome and transcriptome integration reveals cerebral cortical metabolic profiles in rats with subarachnoid hemorrhage.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[25186] doi:10.3389/fnetp.2024.1436046 [paper, repository]

Emergence of metastability in frustrated oscillatory networks: the key role of hierarchical modularity.

Journal: Frontiers in network physiology

Authors' code: EnricoCaprioglio/Emergence-of-metastability-in-frustrated-oscillatory-networks (no license)

Status: code verified, 2 files readable, 6 matches

[25187] doi:10.3389/fneur.2024.1452944 [paper, repository]

Boundary-based registration improves sensitivity for detecting hypoperfusion in sporadic frontotemporal lobar degeneration.

Journal: Frontiers in neurology

Authors' code: ftdc-picsl/hcpASLregInTauTDP (no license)

Status: code verified, 11 files readable

[25188] doi:10.3389/fphar.2024.1440515 [paper, data]

Transcriptome analysis of the aged SAMP8 mouse model of Alzheimer's disease reveals novel molecular targets of formononetin protection.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[25189] doi:10.3390/brainsci14080839 [paper, data]

EEG-Based Seizure Prediction Using Hybrid DenseNet-ViT Network with Attention Fusion.

Journal: Brain sciences

Status: data only, 1 dataset cited

[25190] doi:10.3390/cells13161393 [paper, data]

Ageing-Related Changes to H3K4me3, H3K27ac, and H3K27me3 in Purified Mouse Neurons.

Journal: Cells

Status: data only, 1 dataset cited

[25191] doi:10.3390/pharmaceutics16081101 [paper, data]

Population Pharmacokinetic-Pharmacodynamic Analysis of a Reserpine-Induced Myalgia Model in Rats.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

[25192] doi:10.7759/cureus.67389 [paper, data]

Pan-Cancer Analysis Reveals Long Non-coding RNA (lncRNA) Embryonic Stem Cell-Related Gene (ESRG) as a Promising Diagnostic and Prognostic Biomarker.

Journal: Cureus

Status: data only, 1 dataset cited

Tuesday, 20 August 2024 (30 papers)

[25193] doi:10.1007/s00401-024-02771-5 [paper, data]

Severe neurodegeneration in brains of transgenic rats producing human tau prions.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[25194] doi:10.1007/s10162-024-00959-w [paper, repository]

Enhanced Place Specificity of the Parallel Auditory Brainstem Response: An Electrophysiological Study.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Authors' code: Zenodo 11640 (BSD-3-Clause), labsn/expyfun (BSD-3-Clause)

Status: code verified, 147 files readable, 1 match

[25195] doi:10.1007/s10548-024-01074-y [paper, repository]

Brain Evoked Response Qualification Using Multi-Set Consensus Clustering: Toward Single-Trial EEG Analysis.

Journal: Brain topography

Authors' code: remahini/Single_trial_EEG_MSCC (no license)

Status: code verified, 66 files readable, 3 matches

[25196] doi:10.1016/j.ebiom.2024.105286 [paper, repository]

Accurate identification of genes associated with brain disorders by integrating heterogeneous genomic data into a Bayesian framework.

Journal: EBioMedicine

Authors' code: Dan-He/iGOAT (no license)

Status: code verified, 4 files readable, 2 matches

[25197] doi:10.1016/j.isci.2024.110756 [paper, repository]

Branch-specific clustered parallel fiber input controls dendritic computation in Purkinje cells.

Journal: iScience

Authors' code: modeldb:2016138 (no license)

Status: code verified

[25198] doi:10.1016/j.isci.2024.110766 [paper, data]

β-chitosan attenuates hepatic macrophage-driven inflammation and reverses aging-related cognitive impairment.

Journal: iScience

Status: code on request, 3 datasets cited

[25199] doi:10.1038/s41467-024-51425-3 [paper, data]

Dynamics of directional motor tuning in the primate premotor and primary motor cortices during sensorimotor learning.

Journal: Nature communications

Status: code on request, 1 dataset cited

[25200] doi:10.1038/s41556-024-01487-8 [paper, repository]

Retinoic acid induces human gastruloids with posterior embryo-like structures.

Journal: Nature cell biology

Authors' code: shendurelab/Human-RA-Gastruloid (MIT)

Status: code verified, 21 files readable, 21 matches

[25201] doi:10.1038/s41598-024-69966-4 [paper, data]

Brain of miyoshi myopathy/dysferlinopathy patients presents with structural and metabolic anomalies.

Journal: Scientific reports

Status: code on request, 2 datasets cited

[25202] doi:10.1038/s41598-024-70014-4 [paper, repository]

The recovery of parabolic avalanches in spatially subsampled neuronal networks at criticality.

Journal: Scientific reports

Authors' code: PlenzLab/ParabolicAvalanches (MIT)

Status: code verified, 6 files readable

[25203] doi:10.1038/s42003-024-06694-5 [paper, data]

Large field of view and spatial region of interest transcriptomics in fixed tissue.

Journal: Communications biology

Status: data only, 1 dataset cited

[25204] doi:10.1038/s42003-024-06726-0 [paper, repository]

Chemoarchitectural signatures of subcortical shape alterations in generalized epilepsy.

Journal: Communications biology

Authors' code: Zenodo 13294095 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[25205] doi:10.1038/s44271-024-00131-3 [paper, repository]

Infants evaluate informativeness of evidence and predict causal events as revealed in theta oscillations and predictive looking.

Journal: Communications psychology

Authors' code: OSF zxcn4 (no license)

Status: empty repository

[25206] doi:10.1085/jgp.202313523 [paper, data]

Fluorescence labeling strategies for cell surface expression of TRPV1.

Journal: The Journal of general physiology

Status: data only, 13 datasets cited

[25207] doi:10.1093/braincomms/fcae283 [paper, repository]

Minimum spanning tree analysis of unimpaired individuals at risk of Alzheimer's disease.

Journal: Brain communications

Authors' code: CornelisStam/BrainWave (no license)

Status: empty repository, 1 file readable

[25208] doi:10.1101/gr.279044.124 [paper, repository]

Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences.

Journal: Genome research

Authors' code: chaolinzhanglab/DeltaSplice (MIT)

Status: code verified, 32 files readable, 2 matches

[25209] doi:10.1111/pcn.13717 [paper, data]

The status of MRI databases across the world focused on psychiatric and neurological disorders.

Journal: Psychiatry and clinical neurosciences

Status: data only, 14 datasets cited

[25210] doi:10.1162/imag_a_00260 [paper, repository]

Reduced expression of fMRI subsequent memory effects with increasing severity across the Alzheimer's disease risk spectrum.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: JoramSoch/FADE_BMS (GPL-3.0)

Status: code verified, 14 files readable, 3 matches

[25211] doi:10.1162/imag_a_00267 [paper, repository]

Stacking models of brain dynamics to improve prediction of subject traits in fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: vidaurre/glhmm (GPL-3.0)

Status: code verified, 36 files readable, 7 matches

[25212] doi:10.1162/imag_a_00274 [paper, data]

Initial learning in the brain: From rules to action.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[25213] doi:10.1177/15459683241270080 [paper, repository]

Brain-Hand Function Relationships Based on Level of Grasp Function in Chronic Left-Hemisphere Stroke.

Journal: Neurorehabilitation and neural repair

Authors' code: neurolabusc/NiiStat (GPL-2.0)

Status: code verified, 62 files readable, 3 matches

[25214] doi:10.1371/journal.pbio.3002768 [paper, repository]

Slow-wave sleep drives sleep-dependent renormalization of synaptic AMPA receptor levels in the hypothalamus.

Journal: PLoS biology

Authors' code: Zenodo 12771672 (CC-BY-4.0), instmedpsychtuebingen/sws_hypo_ampa (no license)

Status: code verified, 10 files readable, 4 matches

[25215] doi:10.1371/journal.pone.0307406 [paper, repository]

Childhood family socioeconomic status is linked to adult brain electrophysiology.

Journal: PloS one

Authors' code: OSF 43h75 (no license)

Status: code verified, 34 files readable, 14 matches

[25216] doi:10.1371/journal.pone.0309006 [paper, data]

Feasibility and reliability of online vs in-person cognitive testing in healthy older people.

Journal: PloS one

Status: data only, 1 dataset cited

[25217] doi:10.3389/fnmol.2024.1411384 [paper, data]

C286, an orally available retinoic acid receptor β agonist drug, regulates multiple pathways to achieve spinal cord injury repair.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[25218] doi:10.3390/brainsci14080836 [paper, repository]

An Intrinsically Explainable Method to Decode P300 Waveforms from EEG Signal Plots Based on Convolutional Neural Networks.

Journal: Brain sciences

Authors' code: shipupi/BciSift (no license)

Status: code verified, 36 files readable, 3 matches

[25219] doi:10.3390/v16081330 [paper, data]

Application of diceCT to Study the Development of the Zika Virus-Infected Mouse Brain.

Journal: Viruses

Status: data only, 1 dataset cited

[25220] doi:10.3758/s13428-024-02485-2 [paper, repository]

Linking essay-writing tests using many-facet models and neural automated essay scoring.

Journal: Behavior research methods

Authors' code: AI-Behaviormetrics/LinkingIRTbyAES (no license)

Status: code verified, 7 files readable, 2 matches

[25221] doi:10.7554/elife.84955 [paper, repository]

Neural population dynamics underlying evidence accumulation in multiple rat brain regions.

Journal: eLife

Authors' code: Brody-Lab/PulseInputDDM.jl (Apache-2.0), Brody-Lab/DePasquale-eLife-2024 (Apache-2.0)

Status: code verified, 52 files readable, 3 matches

[25222] doi:10.7554/elife.91757 [paper, repository]

Circulating platelets modulate oligodendrocyte progenitor cell differentiation during remyelination.

Journal: eLife

Authors' code: OSF 8c9ef (no license)

Status: empty repository

Monday, 19 August 2024 (13 papers)

[25223] doi:10.1016/j.jpha.2024.101077 [paper]

Exploring the impact of the liver-intestine-brain axis on brain function in non-alcoholic fatty liver disease.

Journal: Journal of pharmaceutical analysis

Status: data only

[25224] doi:10.1038/s41598-024-69143-7 [paper, data]

End-tidal carbon dioxide and arterial to end-tidal carbon dioxide gradient are associated with mortality in patients with neurological injuries.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25225] doi:10.1038/s41598-024-70065-7 [paper, repository]

Meta-analysis of variance in tDCS effects on response inhibition.

Journal: Scientific reports

Authors' code: supp:PMC11333595/41598_2024_70065_MOESM3_ESM.r (no license)

Status: code verified, 1 file readable, 1 match

[25226] doi:10.1038/s41598-024-70221-z [paper, data]

The role of NPC2 gene in glioma was investigated based on bioinformatics analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25227] doi:10.1073/pnas.2402813121 [paper, repository]

Evidence of association between higher cardiorespiratory fitness and higher cerebral myelination in aging.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mrpadunit/cardiorespiratory_vs_myelin (no license)

Status: code verified, 4 files readable

[25228] doi:10.1073/pnas.2406421121 [paper, repository]

Abortive and productive infection of CNS cell types following in vivo delivery of VSV.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 26508503 (CC-BY-4.0)

Status: code verified

[25229] doi:10.1093/braincomms/fcae281 [paper, repository]

Mapping functional traces of opioid memories in the rat brain.

Journal: Brain communications

Authors' code: joana-g-ribeiro/rat-addiction-fMRI- (no license)

Status: code verified, 7 files readable, 2 matches

[25230] doi:10.1159/000540919 [paper, data]

Gender Disparities in Neurological Symptoms of Long COVID: A Systematic Review and Meta-Analysis.

Journal: Neuroepidemiology

Status: data only, 1 dataset cited

[25231] doi:10.1162/imag_a_00269 [paper]

Childhood adversity predicts striatal functional connectivity gradient changes after acute stress.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[25232] doi:10.1162/imag_a_00271 [paper, repository]

The engagement of the cerebellum and basal ganglia enhances expertise in a sensorimotor adaptation task.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ShineLabUSYD (no license), ShineLabUSYD/Brainstem_DTI_Attractor_Paper (no license), ShineLabUSYD/VM_Adaptation (GPL-3.0), azaho/adaptation_rnn (no license)

Status: code verified, 29 files readable, 10 matches

[25233] doi:10.1186/s13046-024-03157-x [paper, data]

SelK promotes glioblastoma cell proliferation by inhibiting β-TrCP1 mediated ubiquitin-dependent degradation of CDK4.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 1 dataset cited

[25234] doi:10.1371/journal.pone.0295086 [paper, data]

Cortical spheroids show strain-dependent cell viability loss and neurite disruption following sustained compression injury.

Journal: PloS one

Status: data only, 1 dataset cited

[25235] doi:10.3390/v16081327 [paper, repository]

Transcriptional Response to Tick-Borne Flavivirus Infection in Neurons, Astrocytes and Microglia In Vivo and In Vitro.

Journal: Viruses

Authors' code: ERosendal/LGTV_WT_Ifnar_10x (no license)

Status: empty repository, 1 file readable

Sunday, 18 August 2024 (3 papers)

[25236] doi:10.1038/s41540-024-00419-4 [paper, repository]

Spatial computational modelling illuminates the role of the tumour microenvironment for treating glioblastoma with immunotherapies.

Journal: NPJ systems biology and applications

Authors' code: blanchemongeon/ABMGBM (no license)

Status: code verified, 167 files readable, 5 matches

[25237] doi:10.1038/s42003-024-06733-1 [paper]

Peripheral sequestration of huntingtin delays neuronal death and depends on N-terminal ubiquitination.

Journal: Communications biology

Status: code on request

[25238] doi:10.1111/acel.14316 [paper, data]

Cooperative nuclear action of RNA-binding proteins PSF and G3BP2 to sustain neuronal cell viability is decreased in aging and dementia.

Journal: Aging cell

Status: data only, 1 dataset cited

Saturday, 17 August 2024 (16 papers)

[25239] doi:10.1016/j.celrep.2024.114637 [paper]

Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes.

Journal: Cell reports

Status: code on request

[25240] doi:10.1016/j.heliyon.2024.e36457 [paper]

Distinct, common and synergistic effects of insulin and IGF-1 receptors on healthy murine ageing.

Journal: Heliyon

Status: data only

[25241] doi:10.1016/j.isci.2024.110752 [paper, repository]

A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex.

Journal: iScience

Authors' code: PeixotoLab/RNAseq_sleep (no license), COMBINE-lab/salmon (BSD-3-Clause), drighelli/AllenInstituteBrainData (no license), satijalab/seurat (other)

Status: code verified, 289 files readable, 25 matches

[25242] doi:10.1038/s41386-024-01966-4 [paper, repository]

Concurrent and longitudinal neurostructural correlates of irritability in children.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: VU-BRAINS-lab/Archer_Irritability_volume (no license)

Status: code verified, 4 files readable

[25243] doi:10.1038/s41467-024-51368-9 [paper, repository]

Prediction-error signals in anterior cingulate cortex drive task-switching.

Journal: Nature communications

Authors' code: adityagilra/BeliefStateRL (GPL-3.0), Zenodo 12636612 (CC-BY-4.0)

Status: code verified, 30 files readable, 13 matches

[25244] doi:10.1038/s41467-024-51393-8 [paper, repository]

Temporal regularities shape perceptual decisions and striatal dopamine signals.

Journal: Nature communications

Authors' code: irisstone/glmhmm (no license), figshare 24179829 (CC-BY-4.0)

Status: code verified, 55 files readable, 9 matches

[25245] doi:10.1038/s41598-024-67483-y [paper, repository]

Evaluating single multiplicative neuron models in physics-informed neural networks for differential equations.

Journal: Scientific reports

Authors' code: melihagraz (no license)

Status: code verified

[25246] doi:10.1038/s41598-024-69602-1 [paper, repository]

Neural encoding of linguistic speech cues is unaffected by cognitive decline, but decreases with increasing hearing impairment.

Journal: Scientific reports

Authors' code: elbolt/acuLin-speech (MIT)

Status: code verified, 27 files readable, 17 matches

[25247] doi:10.1038/s41598-024-69647-2 [paper]

Three layered sparse dictionary learning algorithm for enhancing the subject wise segregation of brain networks.

Journal: Scientific reports

Status: code on request

[25248] doi:10.1038/s41598-024-69772-y [paper, repository]

Patients recovering from COVID-19 who presented with anosmia during their acute episode have behavioral, functional, and structural brain alterations.

Journal: Scientific reports

Authors' code: pbilleke/Kausell_FigueroaVargas_neuroCOVID (no license)

Status: code verified, 19 files readable, 9 matches

[25249] doi:10.1038/s42003-024-06710-8 [paper, repository]

RRmorph-a new R package to map phenotypic evolutionary rates and patterns on 3D meshes.

Journal: Communications biology

Authors' code: doi:10.5061/dryad.ksn02v7d0 (no license), Zenodo 11658855 (no license)

Status: dead link

[25250] doi:10.1113/ep092045 [paper]

Interference with glutamate antiporter system x_c ^- enables post-hypoxic long-term potentiation in hippocampus.

Journal: Experimental physiology

Status: code on request

[25251] doi:10.1186/s12974-024-03197-2 [paper, data]

Transcriptomic analysis unveils bona fide molecular signatures of microglia under conditions of homeostasis and viral encephalitis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[25252] doi:10.1186/s13020-024-00974-2 [paper, data]

Electroacupuncture negatively regulates the Nesfatin-1/ERK/CREB pathway to alleviate HPA axis hyperactivity and anxiety-like behaviors caused by surgical trauma.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[25253] doi:10.1186/s40478-024-01827-7 [paper, repository]

Machine learning quantification of Amyloid-β deposits in the temporal lobe of 131 brain bank cases.

Journal: Acta neuropathologica communications

Authors' code: keiserlab/plaquebox-paper (MIT), ucdrubinet/BrainSec (GPL-3.0)

Status: code verified, 96 files readable, 1 match

[25254] doi:10.3390/brainsci14080828 [paper, repository]

Improving the Sensitivity of Task-Based Multi-Echo Functional Magnetic Resonance Imaging via <i>T</i>₂* Mapping Using Synthetic Data-Driven Deep Learning.

Journal: Brain sciences

Authors' code: yinghezhao/SD-DL (no license)

Status: code verified, 58 files readable, 4 matches

Friday, 16 August 2024 (20 papers)

[25255] doi:10.1016/j.neurot.2024.e00431 [paper, data]

Pyrimidine compounds BY4003 and BY4008 inhibit glioblastoma cells growth via modulating JAK3/STAT3 signaling pathway.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[25256] doi:10.1038/s41467-024-50363-4 [paper, repository]

High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues.

Journal: Nature communications

Authors' code: YeoLab/FLARE (other), Lisa-LQS/INSCRIBE (no license), Zenodo 12191977 (CC-BY-4.0)

Status: code verified, 44 files readable, 3 matches

[25257] doi:10.1038/s41467-024-50809-9 [paper, repository]

Genome-wide variation study and inter-tissue communication analysis unveil regulatory mechanisms of egg-laying performance in chickens.

Journal: Nature communications

Authors' code: marcus-seldin/QENIE (no license)

Status: code verified, 3 files readable, 2 matches

[25258] doi:10.1038/s41467-024-51290-0 [paper, repository]

Motor innervation directs the correct development of the mouse sympathetic nervous system.

Journal: Nature communications

Authors' code: LouisFaure/glialfates_paper (no license), ipoverennaya/motor_nerve_paper (no license)

Status: code verified, 15 files readable, 7 matches

[25259] doi:10.1038/s41467-024-51338-1 [paper, repository]

Focal seizures induce spatiotemporally organized spiking activity in the human cortex.

Journal: Nature communications

Authors' code: codeocean:7738428 (no license), research.ninds.nih.gov/zaghloul-lab/downloads (no license)

Status: code found, still to be checked

[25260] doi:10.1038/s41467-024-51395-6 [paper, repository]

Mapping the structure-function relationship along macroscale gradients in the human brain.

Journal: Nature communications

Authors' code: evancollins1/brain_structure_function (MIT)

Status: code verified, 8 files readable, 21 matches

[25261] doi:10.1038/s41598-024-69575-1 [paper, repository]

Distinct functional connectivity patterns during naturalistic learning by adolescent first versus second language speakers.

Journal: Scientific reports

Authors' code: OSF 2yuex (no license)

Status: empty repository

[25262] doi:10.1038/s41598-024-70027-z [paper, data]

The association between liking, learning and creativity in music.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25263] doi:10.1073/pnas.2405901121 [paper, data]

Mice lacking &lt;i&gt;Astn2&lt;/i&gt; have ASD-like behaviors and altered cerebellar circuit properties.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25264] doi:10.1093/braincomms/fcae262 [paper, repository]

Long-range white matter fibres and post-stroke verbal and non-verbal cognition.

Journal: Brain communications

Authors' code: neurolabusc/nii_preprocess (no license), Zenodo 4027711 (other-open), rogiedodgie/nii_preprocess (no license)

Status: code verified, 295 files readable, 3 matches

[25265] doi:10.1126/sciadv.adl2256 [paper, repository]

The mRNA content of plasma extracellular vesicles provides a window into molecular processes in the brain during cerebral malaria.

Journal: Science advances

Authors' code: Zenodo 10617875 (CC-BY-4.0), samkioko/cerebral-malaria-ev-rnaseq (no license)

Status: code verified, 6 files readable, 3 matches

[25266] doi:10.1155/2024/6810200 [paper]

Integrated Gene Expression Data-Driven Identification of Molecular Signatures, Prognostic Biomarkers, and Drug Targets for Glioblastoma.

Journal: BioMed research international

Status: data only

[25267] doi:10.1186/s13024-024-00747-3 [paper, repository]

Whole-genome sequencing analysis reveals new susceptibility loci and structural variants associated with progressive supranuclear palsy.

Journal: Molecular neurodegeneration

Authors' code: whtop/PSP-Whole-Genome-Sequencing-Analysis (MIT)

Status: code verified, 34 files readable, 5 matches

[25268] doi:10.1212/wnl.0000000000209764 [paper, repository]

Diffusion Tensor Imaging in Boys With Adrenoleukodystrophy: Identification of Cerebral Disease and Association With Neurocognitive Outcomes.

Journal: Neurology

Authors' code: umn-milab/qmri-ald (GPL-3.0)

Status: code verified, 15 files readable, 9 matches

[25269] doi:10.3389/fnins.2024.1385847 [paper, repository]

A practical guide for combining functional regions of interest and white matter bundles.

Journal: Frontiers in neuroscience

Authors' code: smeisler/fsub_extractor (MIT), MASILab/Synb0-DISCO (no license)

Status: code verified, 37 files readable, 7 matches

[25270] doi:10.3389/fnut.2024.1428228 [paper, data]

Lipid-lowering and antioxidant effects of <i>Polygonatum</i> fermented liquor: a study on intestinal microbiota and brain-gut axis in mice.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[25271] doi:10.3389/fphar.2024.1424803 [paper, data]

Bioinformatic analysis of hippocampal histopathology in Alzheimer's disease and the therapeutic effects of active components of traditional Chinese medicine.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[25272] doi:10.3389/ftox.2024.1374866 [paper, data]

Effect of altered production and storage of dopamine on development and behavior in <i>C. elegans</i>.

Journal: Frontiers in toxicology

Status: data only, 1 dataset cited

[25273] doi:10.3390/brainsci14080820 [paper, repository]

EEG-fNIRS-Based Emotion Recognition Using Graph Convolution and Capsule Attention Network.

Journal: Brain sciences

Authors' code: gitee.com/tycgj/gcn-ca-capsnet (no license)

Status: code verified, 4 files readable, 3 matches

[25274] doi:10.3390/ijms25168911 [paper, repository]

High-Frequency Imaging Reveals Synchronised Delta- and Theta-Band Ca²⁺ Oscillations in the Astrocytic Soma In Vivo.

Journal: International journal of molecular sciences

Authors' code: downloadables.ttk.hu/heja/ijms_2024 (no license)

Status: code found, still to be checked

Thursday, 15 August 2024 (33 papers)

[25275] doi:10.1007/s12031-024-02244-0 [paper, data]

A Holistic Analysis of Alzheimer's Disease-Associated lncRNA Communities Reveals Enhanced lncRNA-miRNA-RBP Regulatory Triad Formation Within Functionally Segregated Clusters.

Journal: Journal of molecular neuroscience : MN

Status: code on request, 1 dataset cited

[25276] doi:10.1007/s12035-024-04419-7 [paper, repository]

Single-Cell Cortical Transcriptomics Reveals Common and Distinct Changes in Cell-Cell Communication in Alzheimer's and Parkinson's Disease.

Journal: Molecular neurobiology

Authors' code: uniluxembourg/lcsb/biomedical-data-science/bds/comparison_ad_pd_single-cell (MIT)

Status: code verified, 15 files readable, 13 matches

[25277] doi:10.1016/j.stemcr.2024.07.004 [paper]

Individual variation in the emergence of anterior-to-posterior neural fates from human pluripotent stem cells.

Journal: Stem cell reports

Status: code on request

[25278] doi:10.1038/s41386-024-01958-4 [paper, repository]

AMPA receptors modulate enhanced dopamine neuronal activity induced by the combined administration of venlafaxine and brexpiprazole.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: nno/burstiDAtor (MIT)

Status: code verified, 22 files readable

[25279] doi:10.1038/s41419-024-06978-y [paper, data]

GPR50 regulates neuronal development as a mitophagy receptor.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[25280] doi:10.1038/s41467-024-50628-y [paper, repository]

Single-cell analysis of innate spinal cord regeneration identifies intersecting modes of neuronal repair.

Journal: Nature communications

Authors' code: Zenodo 11585743 (CC-BY-4.0), mokalledlab/zebrafish_sci_atlas (MIT)

Status: code verified, 12 files readable, 4 matches

[25281] doi:10.1038/s41467-024-51163-6 [paper, repository]

C5aR1 antagonism suppresses inflammatory glial responses and alters cellular signaling in an Alzheimer's disease mouse model.

Journal: Nature communications

Authors' code: urldefense.com/v3/__https: (no license), heidiiliang/r-code-for-arcpmx205 (no license)

Status: code verified, 3 files readable, 7 matches

[25282] doi:10.1038/s41467-024-51274-0 [paper, repository]

Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer.

Journal: Nature communications

Authors' code: coongroup/PhosphoAstral (MIT)

Status: code verified, 21 files readable, 9 matches

[25283] doi:10.1038/s41467-024-51308-7 [paper, repository]

Reach-dependent reorientation of rotational dynamics in motor cortex.

Journal: Nature communications

Authors' code: kaufmanlab/LDR-public (no license)

Status: code verified, 127 files readable, 12 matches

[25284] doi:10.1038/s41467-024-51399-2 [paper, repository]

Existence of multiple transitions of the critical state due to anesthetics.

Journal: Nature communications

Authors' code: Zenodo 12690412 (CC-BY-4.0), davorcuricGit/anestheticsAnalysis (no license)

Status: code verified, 38 files readable, 5 matches

[25285] doi:10.1038/s41597-024-03768-1 [paper, repository]

Exploring the electrophysiology of Parkinson's disease with magnetoencephalography and deep brain recordings.

Journal: Scientific data

Authors' code: Fayed-Rsl/RHM_preprocessing (MIT)

Status: code verified, 13 files readable, 4 matches

[25286] doi:10.1038/s42003-024-06647-y [paper, data]

Role of the circadian nuclear receptor REV-ERBα in dorsal raphe serotonin synthesis in mood regulation.

Journal: Communications biology

Status: data only, 2 datasets cited

[25287] doi:10.1038/s42255-024-01100-0 [paper, repository]

A subset of dopamine receptor-expressing neurons in the nucleus accumbens controls feeding and energy homeostasis.

Journal: Nature metabolism

Authors' code: tdt.com/docs/sdk (no license)

Status: code verified

[25288] doi:10.1038/s44321-024-00117-y [paper, data]

Histidine-rich glycoprotein modulates neutrophils and thrombolysis-associated hemorrhagic transformation.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[25289] doi:10.1073/pnas.2404454121 [paper, data]

Thirst-driven hygrosensory suppression promotes water seeking in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25290] doi:10.1097/j.pain.0000000000003321 [paper, data]

Peripheral nerve injury results in a biased loss of sensory neuron subpopulations.

Journal: Pain

Status: data only, 1 dataset cited

[25291] doi:10.1111/acel.14270 [paper, data]

Blood-brain barrier dysfunction in aging is mediated by brain endothelial senescence.

Journal: Aging cell

Status: data only, 1 dataset cited

[25292] doi:10.1161/strokeaha.124.047449 [paper, repository]

Improved Dementia Prediction in Cerebral Small Vessel Disease Using Deep Learning-Derived Diffusion Scalar Maps From T1.

Journal: Stroke

Authors' code: Yutong441/DS-GAN (no license)

Status: code verified, 41 files readable, 1 match

[25293] doi:10.1162/nol_a_00083 [paper, repository]

No Evidence for Semantic Prediction Deficits in Individuals With Cerebellar Degeneration.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: maedbhk/NOL_cerebellum (MIT)

Status: code verified, 21 files readable

[25294] doi:10.1162/nol_a_00085 [paper, data]

Language and the Cerebellum: Structural Connectivity to the Eloquent Brain.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 2 datasets cited

[25295] doi:10.1162/nol_a_00113 [paper, data]

Cortico-Cerebellar Monitoring of Speech Sequence Production.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 2 datasets cited

[25296] doi:10.1162/nol_a_00120 [paper, repository]

Cerebellar Atrophy and Language Processing in Chronic Left-Hemisphere Stroke.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: Zenodo 4027711 (other-open), rogiedodgie/nii_preprocess (no license)

Status: code verified, 205 files readable

[25297] doi:10.1162/nol_a_00126 [paper, repository]

The Cerebellum Is Sensitive to the Lexical Properties of Words During Spoken Language Comprehension.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: Hannah-r-Mechtenberg/cerebellum-podcast-fmri (CC-BY-SA-4.0)

Status: code verified, 20 files readable, 3 matches

[25298] doi:10.1162/nol_a_00142 [paper, repository]

Microstructural Properties of the Cerebellar Peduncles in Children With Developmental Language Disorder.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 7y3cq (no license)

Status: code verified, 17 files readable, 9 matches

[25299] doi:10.1186/s12876-024-03355-z [paper, repository]

Decoding IBS: a machine learning approach to psychological distress and gut-brain interaction.

Journal: BMC gastroenterology

Authors' code: ydataai/ydata-profiling (MIT), arvidl/ibs-distress (MIT)

Status: code verified, 305 files readable, 8 matches

[25300] doi:10.1186/s12915-024-01977-z [paper, repository]

Intricate response dynamics enhances stimulus discrimination in the resource-limited C. elegans chemosensory system.

Journal: BMC biology

Authors' code: udellgroup/Codes-of-FGSR-for-effecient-low-rank-matrix-recovery (no license), DynamicsAndNeuralSystems/catch22 (GPL-3.0), OSF 36ny5 (no license), zaslab (no license)

Status: code verified, 204 files readable, 4 matches

[25301] doi:10.1371/journal.pcbi.1011913 [paper, repository]

Estimating orientation in natural scenes: A spiking neural network model of the insect central complex.

Journal: PLoS computational biology

Authors' code: stenti/stentiford_cx_ra (no license)

Status: code verified, 19 files readable, 10 matches

[25302] doi:10.1371/journal.pone.0306729 [paper, data]

The architecture of functional brain network modulated by driving under train running noise exposure.

Journal: PloS one

Status: data only, 1 dataset cited

[25303] doi:10.3389/fnmol.2024.1439994 [paper, data]

Transplantation of neural stem cells improves recovery of stroke-affected mice and induces cell-specific changes in GSDMD and MLKL expression.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[25304] doi:10.3390/metabo14080450 [paper, data]

Alterations in Vagal Tone Are Associated with Changes in the Gut Microbiota of Adults with Anxiety and Depression Symptoms: Analysis of Fecal Metabolite Profiles.

Journal: Metabolites

Status: data only, 2 datasets cited

[25305] doi:10.3758/s13415-024-01208-6 [paper, repository]

Cortico-striatal beta oscillations as a reward-related signal.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: mfrancoeur648 (no license)

Status: code verified

[25306] doi:10.7554/elife.80622 [paper]

Plasticity-induced actin polymerization in the dendritic shaft regulates intracellular AMPA receptor trafficking.

Journal: eLife

Status: code on request

[25307] doi:10.7554/elife.97107 [paper, repository]

A dynamic generative model can extract interpretable oscillatory components from multichannel neurophysiological recordings.

Journal: eLife

Authors' code: proloyd/purdonlabmeeg (no license)

Status: code verified, 30 files readable, 9 matches

Wednesday, 14 August 2024 (33 papers, 5 on this page)

[25308] doi:10.1002/alz.14095 [paper, data]

Omics-derived biological modules reflect metabolic brain changes in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request, 1 dataset cited

[25309] doi:10.1016/j.dib.2024.110833 [paper, data]

Acquisition and processing of Motor Imagery and Motor Execution Dataset (MIMED) for six movement activities.

Journal: Data in brief

Status: data only, 4 datasets cited

[25310] doi:10.1016/j.jneumeth.2024.110250 [paper, repository]

Attention-based CNN-BiLSTM for sleep state classification of spatiotemporal wide-field calcium imaging data.

Journal: Journal of neuroscience methods

Authors' code: comp-imaging-sci/attention-based-bilstm-sleep-scoring (MIT)

Status: code verified, 20 files readable, 8 matches

[25311] doi:10.1016/j.molmet.2024.102009 [paper]

HSP60 chaperone deficiency disrupts the mitochondrial matrix proteome and dysregulates cholesterol synthesis.

Journal: Molecular metabolism

Status: code on request

[25312] doi:10.1016/j.xpro.2024.103246 [paper, repository]

Protocol for hybrid structured-light three-dimensional scanning and modeling of human postmortem brains.

Journal: STAR protocols

Authors' code: Zenodo 12745266 (CC-BY-4.0), bwoodsend/vtkplotlib (MIT), WoLpH/numpy-stl (BSD-3-Clause)

Status: code verified, 106 files readable

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