Every paper, by date: page 114

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 114 of 200: 14 August 2024 to 5 August 2024.

Wednesday, 14 August 2024 (33 papers, 28 on this page)

[25313] doi:10.1016/j.xpro.2024.103262 [paper, repository]

Protocol to evaluate the effectiveness of a virtual-reality-based behavioral intervention in enhancing sensory responses to real-world warning.

Journal: STAR protocols

Authors' code: moeinrazavi/EEG-ASR-Python (no license)

Status: code verified, 8 files readable, 2 matches

[25314] doi:10.1038/s41467-024-51254-4 [paper, repository]

Collective dynamics and long-range order in thermal neuristor networks.

Journal: Nature communications

Authors' code: Zenodo 13119587 (CC-BY-4.0), yuanhangzhang98/collective_dynamics_neuristor (MIT)

Status: code verified, 36 files readable, 1 match

[25315] doi:10.1038/s41467-024-51441-3 [paper, repository]

A concentration of visual cortex-like neurons in prefrontal cortex.

Journal: Nature communications

Authors' code: PonceLab/visual-PFC (no license), Zenodo 12566772 (CC-BY-4.0)

Status: code verified, 1 file readable

[25316] doi:10.1038/s41467-024-51443-1 [paper, repository]

Theta-burst direct electrical stimulation remodels human brain networks.

Journal: Nature communications

Authors' code: Center-For-Neurotechnology/CereLAB (MIT), fieldtriptoolbox.org (no license), PrecisionNeuroLab/Analysis-HuangEtAl2024 (no license), pelednoam/mmvt (no license), Center-For-Neurotechnology/Reconstruction-coreg-pipeline (no license)

Status: code verified, 55 files readable, 12 matches

[25317] doi:10.1038/s41531-024-00767-2 [paper, repository]

Standardized wireless deep brain stimulation system for mice.

Journal: NPJ Parkinson's disease

Authors' code: peach-lucien/rodent_dbs (MIT)

Status: code verified, 12 files readable, 4 matches

[25318] doi:10.1038/s41586-024-07799-x [paper, data]

Abstract representations emerge in human hippocampal neurons during inference.

Journal: Nature

Status: data only, 1 dataset cited

[25319] doi:10.1038/s41586-024-07915-x [paper, repository]

Causal evidence of a line attractor encoding an affective state.

Journal: Nature

Authors' code: lindermanlab/ssm (MIT)

Status: code verified, 67 files readable, 2 matches

[25320] doi:10.1038/s41586-024-07916-w [paper, repository]

Encoding of female mating dynamics by a hypothalamic line attractor.

Journal: Nature

Authors' code: lindermanlab/ssm (MIT)

Status: code verified, 67 files readable, 2 matches

[25321] doi:10.1038/s41598-024-69456-7 [paper, data]

Utilising activity patterns of a complex biophysical network model to optimise intra-striatal deep brain stimulation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25322] doi:10.1038/s41598-024-69747-z [paper, repository]

Constructing neural networks with pre-specified dynamics.

Journal: Scientific reports

Authors' code: cmininni/gFTP (no license)

Status: code verified, 13 files readable

[25323] doi:10.1038/s41598-024-69919-x [paper, data]

The influence of mental calculations on brain regions and heart rates.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25324] doi:10.1038/s42003-024-06638-z [paper, repository]

Aberrant neural computation of social controllability in nicotine-dependent humans.

Journal: Communications biology

Authors' code: caromc03/Smoker-s-Forward-Thinking (no license)

Status: code verified, 37 files readable, 6 matches

[25325] doi:10.1038/s42003-024-06669-6 [paper, repository]

Integrative, segregative, and degenerate harmonics of the structural connectome.

Journal: Communications biology

Authors' code: Raj-Lab-UCSF/IntDegSeg (MIT)

Status: code verified, 48 files readable, 7 matches

[25326] doi:10.1038/s42003-024-06699-0 [paper, data]

Direct retino-iridal projections and intrinsic iris contraction mediate the pupillary light reflex in early vertebrates.

Journal: Communications biology

Status: data only, 1 dataset cited

[25327] doi:10.1038/s43587-024-00682-4 [paper, repository]

Proteomics identifies potential immunological drivers of postinfection brain atrophy and cognitive decline.

Journal: Nature aging

Authors' code: dugganmr (no license), pyrysipila (no license)

Status: code verified

[25328] doi:10.1073/pnas.2312511121 [paper, repository]

Genetic mechanisms for impaired synaptic plasticity in schizophrenia revealed by computational modeling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: modeldb:267741 (no license)

Status: code verified

[25329] doi:10.1093/braincomms/fcae278 [paper, repository]

Fatigue in early multiple sclerosis: MRI metrics of neuroinflammation, relapse and neurodegeneration.

Journal: Brain communications

Authors' code: git.ecdf.ed.ac.uk/rmeijboo/statistical-analysis (no license)

Status: code found, still to be checked

[25330] doi:10.1098/rspb.2024.0865 [paper, repository]

Camouflage patterning modulates neural signatures of attention and decision-making.

Journal: Proceedings. Biological sciences

Authors' code: Jacsbill/EdgeDis_calc_demo (no license)

Status: code verified, 52 files readable

[25331] doi:10.1126/sciadv.adp9816 [paper, repository]

Single neuron responses to perceptual difficulty in the mouse auditory cortex.

Journal: Science advances

Authors' code: Zenodo 11532186 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[25332] doi:10.1162/imag_a_00261 [paper, data]

Intrinsic functional and structural network organization in the macaque insula.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[25333] doi:10.1162/imag_a_00268 [paper]

Proprioceptive engagement of the human cerebellum studied with 7T-fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[25334] doi:10.1162/imag_a_00270 [paper, repository]

Evaluating the effect of denoising submillimeter auditory fMRI data with NORDIC.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: lonikefaes/auditory_nordic (no license)

Status: code verified, 35 files readable, 9 matches

[25335] doi:10.1186/s13059-024-03365-w [paper, repository]

Comprehensive network modeling approaches unravel dynamic enhancer-promoter interactions across neural differentiation.

Journal: Genome biology

Authors' code: Zenodo 13119427 (apgl-v3), KreimerLab/E-P-INAnalyzer (GPL-3.0)

Status: code verified, 25 files readable, 7 matches

[25336] doi:10.1212/wnl.0000000000209694 [paper, data]

Risk Variants Associated With Normal Pressure Hydrocephalus: Genome-Wide Association Study in the FinnGen Cohort.

Journal: Neurology

Status: data only, 1 dataset cited

[25337] doi:10.1371/journal.pone.0298717 [paper, data]

Sex-dependent effects of Setd1a haploinsufficiency on development and adult behaviour.

Journal: PloS one

Status: data only, 1 dataset cited

[25338] doi:10.2463/mrms.tn.2024-0069 [paper, repository]

Study of Power Equivalent Continuous Approximation Based on the Recent Consensus Recommendations for Brain Tumor Imaging with Pulsed Chemical Exchange Saturation Transfer at 3T.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Authors' code: sweeqipan/MATLAB-GUI-CEST-Z-Spectrum-Simulation (no license)

Status: code verified, 9 files readable, 3 matches

[25339] doi:10.3389/fnimg.2024.1423770 [paper, data]

Probing hippocampal stimulation in experimental temporal lobe epilepsy with functional MRI.

Journal: Frontiers in neuroimaging

Status: data only, 1 dataset cited

[25340] doi:10.3390/s24165265 [paper, data]

Efficient Sleep Stage Identification Using Piecewise Linear EEG Signal Reduction: A Novel Algorithm for Sleep Disorder Diagnosis.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Tuesday, 13 August 2024 (31 papers)

[25341] doi:10.1002/adhm.202401303 [paper, data]

Light-Controlled Electric Stimulation with Organic Electrolytic Photocapacitors Achieves Complex Neuronal Network Activation: Semi-Chronic Study in Cortical Cell Culture and Rat Model.

Journal: Advanced healthcare materials

Status: data only, 25 datasets cited

[25342] doi:10.1002/alz.14085 [paper, repository]

Educational disparities in brain health and dementia across Latin America and the United States.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: red-lat.com (no license)

Status: code verified

[25343] doi:10.1016/j.bbi.2024.08.027 [paper, repository]

Human cerebrospinal fluid monoclonal CASPR2 autoantibodies induce changes in electrophysiology, functional MRI, and behavior in rodent models.

Journal: Brain, behavior, and immunity

Authors' code: chariteexpmri/rodentdticonnectomics (no license)

Status: code verified, 11 files readable, 2 matches

[25344] doi:10.1016/j.bpsgos.2024.100375 [paper, data]

Alcohol Use Disorder-Associated DNA Methylation in the Nucleus Accumbens and Dorsolateral Prefrontal Cortex.

Journal: Biological psychiatry global open science

Status: data only, 2 datasets cited

[25345] doi:10.1016/j.cub.2024.07.056 [paper]

Light and dopamine impact two circadian neurons to promote morning wakefulness.

Journal: Current biology : CB

Status: code on request

[25346] doi:10.1016/j.heliyon.2024.e36078 [paper, data]

Single session and repeated anodal transcranial direct current stimulation over the right dorsolateral prefrontal cortex increases reflective thinking but not working memory updating performance.

Journal: Heliyon

Status: data only, 1 dataset cited

[25347] doi:10.1016/j.heliyon.2024.e36119 [paper, repository]

Application of the bicharacteristic attention residual pyramid for the treatment of brain tumors.

Journal: Heliyon

Authors' code: kaggle.com/mateuszbuda/lgg-mri-segmentation (no license)

Status: dead link

[25348] doi:10.1016/j.isci.2024.110713 [paper, repository]

Asymmetry in synaptic connectivity balances redundancy and reachability in the <i>Caenorhabditis elegans</i> connectome.

Journal: iScience

Authors' code: Zenodo 10778067 (CC-BY-4.0)

Status: code verified, 3 files readable, 5 matches

[25349] doi:10.1016/j.nbd.2024.106638 [paper, data]

Alterations in DNA 5-hydroxymethylation patterns in the hippocampus of an experimental model of chronic epilepsy.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[25350] doi:10.1016/j.omton.2024.200861 [paper]

Primary murine high-grade glioma cells derived from RCAS/tv-a diffuse glioma model reprogram naive T cells into immunosuppressive regulatory T lymphocytes.

Journal: Molecular therapy. Oncology

Status: code on request

[25351] doi:10.1021/acs.jmedchem.4c01211 [paper, data]

Development of Brain Penetrant Pyridazine Pantothenate Kinase Activators.

Journal: Journal of medicinal chemistry

Status: data only, 10 datasets cited

[25352] doi:10.1038/s41467-024-50504-9 [paper, repository]

The critical dynamics of hippocampal seizures.

Journal: Nature communications

Authors' code: figshare 25305238 (CC-BY-4.0)

Status: code verified

[25353] doi:10.1038/s41467-024-51283-z [paper, repository]

The right posterior parietal cortex mediates spatial reorienting of attentional choice bias.

Journal: Nature communications

Authors' code: figshare 25125470 (CC-BY-4.0)

Status: code verified

[25354] doi:10.1038/s41594-024-01369-5 [paper, repository]

Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization.

Journal: Nature structural & molecular biology

Authors' code: Zenodo 11654386 (CC-BY-4.0)

Status: empty repository

[25355] doi:10.1038/s44324-024-00021-6 [paper, data]

Valproic acid targets IDH1 mutants through alteration of lipid metabolism.

Journal: npj metabolic health and disease

Status: data only, 1 dataset cited

[25356] doi:10.1073/pnas.2411167121 [paper, data]

Entrainment echoes in the cerebellum.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25357] doi:10.1080/0886022x.2024.2387426 [paper, data]

Analysis of prefrontal cerebral blood volume and flow changes in ESKD patients undergoing hemodialysis using functional near-infrared spectroscopy.

Journal: Renal failure

Status: data only, 1 dataset cited

[25358] doi:10.1083/jcb.202404038 [paper, repository]

Permanent deconstruction of intracellular primary cilia in differentiating granule cell neurons.

Journal: The Journal of cell biology

Authors' code: pattonw/centriole_data (no license)

Status: code verified, 6 files readable, 2 matches

[25359] doi:10.1093/braincomms/fcae258 [paper, data]

Gene expression and brain imaging association study reveals gene signatures in major depressive disorder.

Journal: Brain communications

Status: data only, 1 dataset cited

[25360] doi:10.1111/psyp.14665 [paper, repository]

Electrophysiological correlates of why humans deviate from rational decision-making: A registered replication study.

Journal: Psychophysiology

Authors' code: OSF zq5ej (no license)

Status: code verified, 5 files readable, 3 matches

[25361] doi:10.1161/hypertensionaha.123.22617 [paper, repository]

Blood-Brain Barrier Integrity Decreases With Higher Blood Pressure: A 7T DCE-MRI Study.

Journal: Hypertension (Dallas, Tex. : 1979)

Authors' code: HybridFlow/HybridFlow (BSD-3-Clause)

Status: code verified, 10 files readable, 4 matches

[25362] doi:10.1162/imag_a_00257 [paper, repository]

XCP-D: A robust pipeline for the post-processing of fMRI data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DCAN-Labs/biceps (BSD-3-Clause), Zenodo 17136292 (CC-BY-4.0), Zenodo 17136293 (CC-BY-4.0)

Status: code verified, 94 files readable, 4 matches

[25363] doi:10.1162/imag_a_00263 [paper, repository]

Characterisation of laminar and vascular spatiotemporal dynamics of CBV and BOLD signals using VASO and ME-GRE at 7T in humans.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sdres/neurovascularCouplingVASO (MIT)

Status: code verified, 101 files readable, 10 matches

[25364] doi:10.1172/jci177413 [paper, data]

Pediatric glioma immune profiling identifies TIM3 as a therapeutic target in BRAF fusion pilocytic astrocytoma.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[25365] doi:10.1186/s13287-024-03879-x [paper, data]

Mesenchymal stem cell-derived extracellular vesicles mitigate neuronal damage from intracerebral hemorrhage by modulating ferroptosis.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[25366] doi:10.14336/ad.2024.0894 [paper, repository]

Myelin Changes in Poor Sleepers: Insights into Glymphatic Clearance Function and Regional Circadian Clock Gene Expression.

Journal: Aging and disease

Authors' code: abagen.readthedocs.io (no license)

Status: code verified

[25367] doi:10.3389/fnins.2024.1435212 [paper, repository]

Identification and validation of novel engineered AAV capsid variants targeting human glia.

Journal: Frontiers in neuroscience

Authors' code: MNM-LU/BRAVE-gliaSpheres (GPL-2.0)

Status: code verified, 29 files readable, 2 matches

[25368] doi:10.3389/fphys.2024.1325784 [paper, repository]

Event-related pupillary response-based authentication system using eye-tracker add-on augmented reality glasses for individual identification.

Journal: Frontiers in physiology

Authors' code: thuyngch/Iris-Recognition (no license)

Status: dead link

[25369] doi:10.3390/brainsci14080810 [paper, data]

Continuous Dictionary of Nodes Model and Bilinear-Diffusion Representation Learning for Brain Disease Analysis.

Journal: Brain sciences

Status: data only, 1 dataset cited

[25370] doi:10.7150/ijms.100127 [paper, data]

Mitochondrial ATP Synthesis and Proton Transport Synergistically Mitigate Oligodendrocyte Progenitor Cell Dysfunction Following Transient Middle Cerebral Artery Occlusion via the Pbx3/Dguok/Kif21b Signaling Pathway.

Journal: International journal of medical sciences

Status: data only, 1 dataset cited

[25371] doi:10.7759/cureus.66764 [paper, repository]

Anatomical Features and Morphometric Characteristics of the Sphenoidal Sinus in MRI Studies.

Journal: Cureus

Authors' code: nroduit/Weasis (other)

Status: code verified, 1,440 files readable, 1 match

Monday, 12 August 2024 (27 papers)

[25372] doi:10.1016/j.brs.2024.08.003 [paper, repository]

How conductivity boundaries influence the electric field induced by transcranial magnetic stimulation in in vitro experiments.

Journal: Brain stimulation

Authors' code: padmasundaram/invitroTMS (MIT)

Status: code verified, 229 files readable, 1 match

[25373] doi:10.1016/j.cell.2024.07.030 [paper, repository]

Macrophage-mediated myelin recycling fuels brain cancer malignancy.

Journal: Cell

Authors' code: djkloosterman/Kloosterman_et_al_Cell_2024 (no license)

Status: code verified, 18 files readable, 13 matches

[25374] doi:10.1016/j.omtm.2024.101317 [paper, data]

An autonucleolytic suspension HEK293F host cell line for high-titer serum-free AAV5 and AAV9 production with reduced levels of DNA impurity.

Journal: Molecular therapy. Methods & clinical development

Status: code on request, 2 datasets cited

[25375] doi:10.1016/j.patter.2024.101041 [paper, repository]

A FAIR, open-source virtual reality platform for dendritic spine analysis.

Journal: Patterns (New York, N.Y.)

Authors' code: BlueBrain/NeuroMorphoVis (GPL-3.0), Zenodo 10607576 (CC0-1.0)

Status: code verified, 613 files readable, 1 match

[25376] doi:10.1038/s41467-024-51066-6 [paper, data]

Fully human single-domain antibody targeting a highly conserved cryptic epitope on the Nipah virus G protein.

Journal: Nature communications

Status: data only, 3 datasets cited

[25377] doi:10.1038/s41540-024-00411-y [paper, repository]

A practically efficient algorithm for identifying critical control proteins in directed probabilistic biological networks.

Journal: NPJ systems biology and applications

Authors' code: yusuke-tokuhara/DCPMDS (no license)

Status: code verified, 12 files readable

[25378] doi:10.1038/s41598-024-66693-8 [paper]

Multiple Transcriptomic Analyses Explore Potential Synaptic Biomarker Rabphilin-3A for Alzheimer's Disease.

Journal: Scientific reports

Status: data only

[25379] doi:10.1038/s43856-024-00578-9 [paper, repository]

Optical coherence tomography quantifies gradient refractive index and mechanical stiffness gradient across the human lens.

Journal: Communications medicine

Authors' code: Zenodo 11198498 (Apache-2.0)

Status: code verified, 11 files readable, 2 matches

[25380] doi:10.1073/pnas.2401687121 [paper, repository]

The neocortical infrastructure for language involves region-specific patterns of laminar gene expression.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hdl.handle.net/1839/0d080ed1-9c8b-48b8-b452-af2dba18310e (no license)

Status: code verified

[25381] doi:10.1093/braincomms/fcae267 [paper, repository]

Timing of SMN replacement therapies in mouse models of spinal muscular atrophy: a systematic review and meta-analysis.

Journal: Brain communications

Authors' code: camaradesuk/ASySD (GPL-3.0), datashare.ed.ac.uk/handle/10283 (no license)

Status: code verified, 26 files readable

[25382] doi:10.1093/nsr/nwae279 [paper, repository]

Finding emergence in data by maximizing effective information.

Journal: National science review

Authors' code: Matthew-ymz/Code-for-Finding-emergence-in-data-5.2 (Apache-2.0)

Status: code verified, 13 files readable, 1 match

[25383] doi:10.1111/bdi.13487 [paper, repository]

Hippocampal temporal dynamics and spatial heterogeneity unveil vulnerability markers in the offspring of bipolar patients.

Journal: Bipolar disorders

Authors' code: MIPLabCH/mCAP (Apache-2.0)

Status: code verified, 12 files readable

[25384] doi:10.1162/imag_a_00258 [paper, data]

Functional connectivity across the human subcortical auditory system using an autoregressive matrix-Gaussian copula graphical model approach with partial correlations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[25385] doi:10.1162/imag_a_00264 [paper, repository]

Immediate effect of quadri-pulse stimulation on human brain microstructures and functions.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ikko-kimura/QPS-MRI (no license)

Status: code verified, 50 files readable, 12 matches

[25386] doi:10.1162/imag_a_00265 [paper, repository]

Improving source estimation of retinotopic MEG responses by combining data from multiple subjects.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: PaavoHietala/IN-multi-subject-2024 (no license)

Status: code verified, 20 files readable, 10 matches

[25387] doi:10.1186/s12974-024-03195-4 [paper]

Secoisolariciresinol diglucoside attenuates neuroinflammation and cognitive impairment in female Alzheimer's disease mice via modulating gut microbiota metabolism and GPER/CREB/BDNF pathway.

Journal: Journal of neuroinflammation

Status: data only

[25388] doi:10.1371/journal.pbio.3002732 [paper, repository]

State-dependent connectivity in auditory-reward networks predicts peak pleasure experiences to music.

Journal: PLoS biology

Authors' code: OSF tnrxe (no license)

Status: code verified, 6 files readable, 3 matches

[25389] doi:10.1371/journal.pbio.3002763 [paper, repository]

An evolutionarily conserved pathway mediated by neuroparsin-A regulates reproductive plasticity in ants.

Journal: PLoS biology

Authors' code: supp:PMC11398701/pbio.3002763.s019.rar (no license)

Status: code verified

[25390] doi:10.1371/journal.pcbi.1011751 [paper, repository]

The Na+/K+-ATPase generically enables deterministic bursting in class I neurons by shearing the spike-onset bifurcation structure.

Journal: PLoS computational biology

Authors' code: Zenodo 11385326 (CC-BY-4.0), itbgit.biologie.hu-berlin.de/compneurophys/the-na-k-atpase-generically-enables-deterministic-bursting-in-class-i-neurons-by-shearing-the-spike-onset-bifurcation-structure (no license)

Status: code verified

[25391] doi:10.3389/fnbeh.2024.1399394 [paper, repository]

Cognitive mechanisms of learning in sequential decision-making under uncertainty: an experimental and theoretical approach.

Journal: Frontiers in behavioral neuroscience

Authors' code: search.kg.ebrains.eu/instances/ffda985e-9023-4d06-aa79-0ec7109ff55c (no license), gloriacec/Model_ConsequenceBasedDecisionMaking (MIT)

Status: code verified, 5 files readable, 1 match

[25392] doi:10.3389/fncel.2024.1422362 [paper]

Mitochondrial stress-induced H4K12 hyperacetylation dysregulates transcription in Parkinson's disease.

Journal: Frontiers in cellular neuroscience

Status: data only

[25393] doi:10.3390/biomedicines12081824 [paper, data]

New Perspectives for Spinal Cord Stimulation in Parkinson's Disease-Associated Gait Impairment: A Systematic Review.

Journal: Biomedicines

Status: data only, 1 dataset cited

[25394] doi:10.3390/diagnostics14161751 [paper, data]

Cross-Modality Medical Image Segmentation via Enhanced Feature Alignment and Cross Pseudo Supervision Learning.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[25395] doi:10.3390/s24165214 [paper, repository]

A Polymer Thick Film on an Organic Substrate Grid Electrode and an Open-Source Recording System for UHF MRI: An Imaging Study.

Journal: Sensors (Basel, Switzerland)

Authors' code: eMRISystems2024/eMRISystems_HF-2 (MIT)

Status: code verified, 2 files readable

[25396] doi:10.3390/s24165215 [paper, data]

A Method for the Spatial Interpolation of EEG Signals Based on the Bidirectional Long Short-Term Memory Network.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[25397] doi:10.7554/elife.88733 [paper, repository]

Periaqueductal gray activates antipredatory neural responses in the amygdala of foraging rats.

Journal: eLife

Authors' code: kimlab-uw/velocity (GPL-3.0)

Status: code verified, 2 files readable

[25398] doi:10.7554/elife.89926 [paper, repository]

Semaphorin7A patterns neural circuitry in the lateral line of the zebrafish.

Journal: eLife

Authors' code: agnikdasgupta/Sema7A_regulates_neural_circuitry (no license)

Status: code verified, 2 files readable, 1 match

Sunday, 11 August 2024 (11 papers)

[25399] doi:10.1002/alz.14142 [paper]

Proteomic analyses reveal plasma EFEMP1 and CXCL12 as biomarkers and determinants of neurodegeneration.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[25400] doi:10.1002/alz.14181 [paper, data]

Whole exome sequencing analyses identified novel genes for Alzheimer's disease and related dementia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[25401] doi:10.1016/j.celrep.2024.114580 [paper, repository]

Adaptive robustness through incoherent signaling mechanisms in a regenerative brain.

Journal: Cell reports

Authors' code: samuelbray32/planameterization (GNU), Zenodo 12697208 (CC-BY-4.0), samuelbray32/PARK (GNU), Zenodo 12697214 (CC-BY-4.0), samuelbray32/dualChannelRNN (GNU)

Status: code verified, 71 files readable, 5 matches

[25402] doi:10.1016/j.celrep.2024.114615 [paper]

Retinal neurons establish mosaic patterning by excluding homotypic somata from their dendritic territories.

Journal: Cell reports

Status: code on request

[25403] doi:10.1038/s41467-024-50889-7 [paper, repository]

Genetically- and spatially-defined basolateral amygdala neurons control food consumption and social interaction.

Journal: Nature communications

Authors' code: limserenahansol/1p_BLA_sync_permutation_social_valence (no license), Zenodo 11995740 (CC-BY-4.0)

Status: code verified, 15 files readable, 3 matches

[25404] doi:10.1038/s41467-024-51227-7 [paper, repository]

Differential stability of task variable representations in retrosplenial cortex.

Journal: Nature communications

Authors' code: ucsb-goard-lab/defineCellROIs (no license)

Status: code verified, 4 files readable

[25405] doi:10.1038/s41467-024-51243-7 [paper, repository]

Rethinking simultaneous suppression in visual cortex via compressive spatiotemporal population receptive fields.

Journal: Nature communications

Authors' code: VPNL/simseqPRF (MIT), VPNL/spatiotemporalPRFs (GPL-3.0), royhessels/I2MC (CC-BY-4.0), Zenodo 12658143 (CC-BY-4.0), Zenodo 12658232 (CC-BY-4.0)

Status: code verified, 467 files readable, 40 matches

[25406] doi:10.1038/s41531-024-00758-3 [paper, repository]

A worldwide study of white matter microstructural alterations in people living with Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: enigma.ini.usc.edu/protocols/dti-protocols (no license)

Status: code verified

[25407] doi:10.1038/s41598-024-69597-9 [paper, data]

Developmental changes in brain structure and function following exposure to oral LSD during adolescence.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25408] doi:10.3390/brainsci14080806 [paper]

Clinical, Cortical, Subcortical, and White Matter Features of Right Temporal Variant FTD.

Journal: Brain sciences

Status: code on request

[25409] doi:10.3390/s24165207 [paper, data]

MOVING: A Multi-Modal Dataset of EEG Signals and Virtual Glove Hand Tracking.

Journal: Sensors (Basel, Switzerland)

Status: data only, 5 datasets cited

Saturday, 10 August 2024 (16 papers)

[25410] doi:10.1016/j.addicn.2024.100170 [paper, data]

Parvalbumin expression does not account for discrete electrophysiological profiles of glutamatergic ventral pallidal subpopulations.

Journal: Addiction neuroscience

Status: data only, 1 dataset cited

[25411] doi:10.1016/j.cortex.2024.07.007 [paper, repository]

Establishing and evaluating the gradient of item naming difficulty in post-stroke aphasia and semantic dementia.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Authors' code: OSF t732n (no license)

Status: code verified

[25412] doi:10.1016/j.dadr.2024.100271 [paper, repository]

Longitudinal tracking of alcohol expectancies and their associations with impulsivity in alcohol naïve youth in the adolescent brain cognitive development (ABCD) study.

Journal: Drug and alcohol dependence reports

Authors' code: faith-adams-mssm/impulsivityanalysesfeb2024 (no license)

Status: code verified, 2 files readable, 2 matches

[25413] doi:10.1016/j.heliyon.2024.e36061 [paper]

Non-invasive TMS attenuates neuropathic pain after spinal cord injury associated with enhancing brain functional connectivity and HPA axis activity.

Journal: Heliyon

Status: code on request

[25414] doi:10.1016/j.nicl.2024.103650 [paper, repository]

Prognostic enrichment for early-stage Huntington's disease: An explainable machine learning approach for clinical trial.

Journal: NeuroImage. Clinical

Authors' code: mghofrani/HD_prognostic_model (no license)

Status: code verified, 3 files readable, 3 matches

[25415] doi:10.1016/j.xcrm.2024.101684 [paper]

SIRT1 improves lactate homeostasis in the brain to alleviate parkinsonism via deacetylation and inhibition of PKM2.

Journal: Cell reports. Medicine

Status: code on request

[25416] doi:10.1016/j.xpro.2024.103212 [paper]

Protocol for the generation of cultured cortical brain organoid slices.

Journal: STAR protocols

Status: code on request

[25417] doi:10.1016/j.xpro.2024.103252 [paper]

Protocol for behavioral and neural recording in macaques during a novelty detection task.

Journal: STAR protocols

Status: code on request

[25418] doi:10.1016/j.xpro.2024.103253 [paper]

Protocol for the isolation and purification of endoplasmic reticulum-plasma membrane junctions from the mouse brain.

Journal: STAR protocols

Status: code on request

[25419] doi:10.1016/j.ymthe.2024.08.009 [paper]

Effective knockdown-replace gene therapy in a novel mouse model of DNM1 developmental and epileptic encephalopathy.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[25420] doi:10.1038/s41467-024-50680-8 [paper, repository]

Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq.

Journal: Nature communications

Authors' code: Ruitulyu/KAS-Analyzer (MIT), Zenodo 6519166 (other-open), ruitulyu/kas-pipe2 (MIT)

Status: code verified, 120 files readable, 8 matches

[25421] doi:10.1038/s41467-024-50846-4 [paper, repository]

Fast imaging of millimeter-scale areas with beam deflection transmission electron microscopy.

Journal: Nature communications

Authors' code: seung-lab/PyAGTUM (no license), Zenodo 11541305 (CC-BY-4.0)

Status: code verified, 24 files readable

[25422] doi:10.1038/s41597-024-03688-0 [paper, repository]

Mouse Escape Behaviors and mPFC-BLA Activity Dataset: Understanding Flexible Defensive Strategies Under Threat.

Journal: Scientific data

Authors' code: jeelabKIST/Cho2024_MouseEscapeData (MIT)

Status: code verified, 11 files readable, 9 matches

[25423] doi:10.1038/s41597-024-03729-8 [paper, repository]

A MultiModal Vigilance (MMV) dataset during RSVP and SSVEP brain-computer interface tasks.

Journal: Scientific data

Authors' code: uzh/edf-converter (MIT)

Status: code verified, 46 files readable, 5 matches

[25424] doi:10.1186/s12962-024-00568-7 [paper, repository]

Economic aspects of prolonged home video-EEG monitoring: a simulation study.

Journal: Cost effectiveness and resource allocation : C/E

Authors' code: marikmedv/Virtual_Video_EEG (no license)

Status: code verified, 1 file readable, 2 matches

[25425] doi:10.3390/nu16162641 [paper, data]

A Mixture of Soybean Oil and Lard Alleviates Postpartum Cognitive Impairment via Regulating the Brain Fatty Acid Composition and SCFA/ERK(1/2)/CREB/BDNF Pathway.

Journal: Nutrients

Status: data only, 2 datasets cited

Friday, 9 August 2024 (24 papers)

[25426] doi:10.1002/1878-0261.13714 [paper, data]

Transcription factor 4 is a key mediator of oncogenesis in neuroblastoma by promoting MYC activity.

Journal: Molecular oncology

Status: data only, 1 dataset cited

[25427] doi:10.1002/npr2.12472 [paper, data]

Photopharmacological modulation of hippocampal local field potential by caged-glutamate with MicroLED probe.

Journal: Neuropsychopharmacology reports

Status: data only, 1 dataset cited

[25428] doi:10.1016/j.bpsgos.2024.100372 [paper, repository]

Exploring the Embodied Mind: Functional Connectome Fingerprinting of Meditation Expertise.

Journal: Biological psychiatry global open science

Authors' code: OSF 7xwyq (no license)

Status: empty repository

[25429] doi:10.1016/j.crmeth.2024.100836 [paper, repository]

Genome-wide and cell-type-selective profiling of in vivo small noncoding RNA:target RNA interactions by chimeric RNA sequencing.

Journal: Cell reports methods

Authors' code: Meffert-Lab/SCRAP (no license)

Status: code verified, 6 files readable, 2 matches

[25430] doi:10.1016/j.crmeth.2024.100837 [paper, repository]

Defining spatial nonuniformities of all ipRGC types using an improved Opn4&lt;sup&gt;cre&lt;/sup&gt; recombinase mouse line.

Journal: Cell reports methods

Authors' code: doi:10.17632/36tpcd3ykb.1 (no license)

Status: code verified

[25431] doi:10.1016/j.xcrm.2024.101669 [paper, data]

Integrative proteomics identifies a conserved Aβ amyloid responsome, novel plaque proteins, and pathology modifiers in Alzheimer's disease.

Journal: Cell reports. Medicine

Status: code on request, 4 datasets cited

[25432] doi:10.1038/s41467-024-51110-5 [paper, repository]

High-performance deep spiking neural networks with 0.3 spikes per neuron.

Journal: Nature communications

Authors' code: IBM/equivalent-training-ReLUnetwork-SNN (Apache-2.0), Zenodo 12812581 (CC-BY-4.0)

Status: code verified, 12 files readable, 1 match

[25433] doi:10.1038/s41467-024-51300-1 [paper, data]

All-in-one wearable drug efficacy assessment systems for bulbar muscle function using amyotrophic lateral sclerosis animal models.

Journal: Nature communications

Status: data only, 2 datasets cited

[25434] doi:10.1038/s41531-024-00734-x [paper]

Clinical symptoms and neuroanatomical substrates of daytime sleepiness in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[25435] doi:10.1038/s41531-024-00762-7 [paper, data]

Comparison of beta peak detection algorithms for data-driven deep brain stimulation programming strategies in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request, 1 dataset cited

[25436] doi:10.1038/s41598-024-62366-8 [paper]

Ventriculoatrial shunt remains a safe surgical alternative for hydrocephalus: a systematic review and meta-analysis.

Journal: Scientific reports

Status: code on request

[25437] doi:10.1038/s41598-024-69525-x [paper, data]

Tracking the brain signature of (mis)spelled logotypes via letter transpositions and replacements.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25438] doi:10.1038/s42003-024-06668-7 [paper, repository]

Accurate neuron segmentation method for one-photon calcium imaging videos combining convolutional neural networks and clustering.

Journal: Communications biology

Authors' code: JinghaoLu/MIN1PIPE (GPL-3.0), zhoupc/CNMF_E (GPL-3.0), schnitzer-lab/EXTRACT-public (MIT), yuanlong-o/Deep_widefield_cal_inferece (GPL-2.0), YijunBao/SUNS2_ANE_paper_reproduction (GPL-2.0), Zenodo 12742872 (CC-BY-4.0)

Status: code verified, 1,518 files readable, 22 matches

[25439] doi:10.1038/s42003-024-06677-6 [paper, repository]

Crossmodal hierarchical predictive coding for audiovisual sequences in the human brain.

Journal: Communications biology

Authors' code: OSF 4s2e3 (no license)

Status: code verified, 1 file readable

[25440] doi:10.1073/pnas.2314074121 [paper, repository]

Human adolescent brain similarity development is different for paralimbic versus neocortical zones.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: LenaDorfschmidt/neurosynth_analysis (no license), LenaDorfschmidt/morphometric-similarity-adolescence (no license)

Status: code verified, 15 files readable, 4 matches

[25441] doi:10.1080/2162402x.2024.2386789 [paper]

Transcriptomics-based characterization of the immuno-stromal microenvironment in pediatric low-grade glioma.

Journal: Oncoimmunology

Status: code on request

[25442] doi:10.1126/sciadv.adn0367 [paper, data]

Remote neurostimulation through an endogenous ion channel using a near-infrared light-activatable nanoagonist.

Journal: Science advances

Status: data only, 2 datasets cited

[25443] doi:10.1161/jaha.124.035008 [paper, repository]

Mendelian Randomization and Bayesian Colocalization Analysis Implicate Glycoprotein VI as a Potential Drug Target for Cardioembolic Stroke in South Asian Populations.

Journal: Journal of the American Heart Association

Authors' code: wusiwei2022/MR_UKBPPP_SAS_Stroke (no license)

Status: empty repository

[25444] doi:10.1371/journal.pcbi.1012003 [paper, repository]

Evolution of phenotypic plasticity leads to tumor heterogeneity with implications for therapy.

Journal: PLoS computational biology

Authors' code: Zenodo 10806326 (CC-BY-4.0), sisyga/gog (BSD-3-Clause)

Status: code verified, 68 files readable, 7 matches

[25445] doi:10.1371/journal.pone.0301406 [paper, repository]

The aperiodic exponent of neural activity varies with vigilance state in mice and men.

Journal: PloS one

Authors' code: frejagam/eegcode (GPL-3.0)

Status: code verified, 17 files readable, 2 matches

[25446] doi:10.3389/fninf.2024.1415512 [paper, repository]

Customizable automated cleaning of multichannel sleep EEG in SleepTrip.

Journal: Frontiers in neuroinformatics

Authors' code: coxroy/sleeptrip (GPL-2.0), Zenodo 10256036 (CC-BY-4.0)

Status: code verified, 2,000 files readable, 7 matches

[25447] doi:10.3389/fnins.2024.1400963 [paper, data]

Single-cell RNA sequencing of aging neural progenitors reveals loss of excitatory neuron potential and a population with transcriptional immune response.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[25448] doi:10.7554/elife.87881 [paper, repository]

Revealing unexpected complex encoding but simple decoding mechanisms in motor cortex via separating behaviorally relevant neural signals.

Journal: eLife

Authors' code: eric0li/d-VAE (no license)

Status: code verified, 15 files readable, 3 matches

[25449] doi:10.7717/peerj.17775 [paper, repository]

The role of lncRNAs related ceRNA regulatory network in multiple hippocampal pathological processes during the development of perioperative neurocognitive disorders.

Journal: PeerJ

Authors' code: supp:PMC11318589/peerj-12-17775-s005.r (no license), supp:PMC11318589/peerj-12-17775-s006.r (no license), supp:PMC11318589/peerj-12-17775-s007.r (no license)

Status: code verified, 3 files readable

Thursday, 8 August 2024 (27 papers)

[25450] doi:10.1007/s00018-024-05386-x [paper, data]

IER3IP1-mutations cause microcephaly by selective inhibition of ER-Golgi transport.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[25451] doi:10.1016/j.dib.2024.110810 [paper, repository]

Social reward and nonsocial reward processing across the adult lifespan: An interim multi-echo fMRI and diffusion dataset.

Journal: Data in brief

Authors' code: DVS-Lab/SRPAL-DataInBrief (CC0-1.0)

Status: code verified, 80 files readable, 4 matches

[25452] doi:10.1016/j.eclinm.2024.102751 [paper, repository]

Predicting recovery in patients with mild traumatic brain injury and a normal CT using serum biomarkers and diffusion tensor imaging (CENTER-TBI): an observational cohort study.

Journal: EClinicalMedicine

Authors' code: DrSophieRichter/DTImTBI (no license)

Status: code verified, 26 files readable, 12 matches

[25453] doi:10.1016/j.heliyon.2024.e35948 [paper, repository]

Dopamine D2 receptor activation counteracts olfactory dysfunction and related cellular abnormalities in experimental parkinsonism.

Journal: Heliyon

Authors' code: dacamemg/Olfactory-Bulb-Oscillations (no license)

Status: code verified, 2 files readable

[25454] doi:10.1016/j.jbc.2024.107640 [paper, data]

Structural basis for RNA recognition by the C-terminal RRM domain of human RBM45.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[25455] doi:10.1016/j.xcrm.2024.101680 [paper, repository]

A glia-enriched stem cell 3D model of the human brain mimics the glial-immune neurodegenerative phenotypes of multiple sclerosis.

Journal: Cell reports. Medicine

Authors' code: AbsintaLab/GLIA-ENRICHED-ORGANOIDS (no license)

Status: code verified, 20 files readable, 17 matches

[25456] doi:10.1021/acscentsci.4c01073 [paper, data]

Identification of Rocaglate Acyl Sulfamides as Selective Inhibitors of Glioblastoma Stem Cells.

Journal: ACS central science

Status: data only, 5 datasets cited

[25457] doi:10.1038/s41386-024-01937-9 [paper, repository]

Hypocretin in the nucleus accumbens shell modulates social approach in female but not male California mice.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: bctrainorlab/Wrightetal_2023 (GPL-3.0)

Status: code verified, 6 files readable, 1 match

[25458] doi:10.1038/s41467-024-50099-1 [paper, repository]

NPAS4 supports cocaine-conditioned cues in rodents by controlling the cell type-specific activation balance in the nucleus accumbens.

Journal: Nature communications

Authors' code: BioinformaticsMUSC/HughesEtAl_NPAS4Cocaine (no license), Zenodo 11265104 (CC-BY-4.0), Zenodo 11265105 (CC-BY-4.0), bertolabmusc/hughesetal_npas4cocaine (no license)

Status: code verified, 58 files readable, 8 matches

[25459] doi:10.1038/s41467-024-50514-7 [paper, repository]

Mass spectrometry imaging of SOD1 protein-metal complexes in SOD1G93A transgenic mice implicates demetalation with pathology.

Journal: Nature communications

Authors' code: coopergroup-massspec/sum_matlab_figures (no license), Zenodo 12572632 (CC-BY-4.0)

Status: code verified, 4 files readable

[25460] doi:10.1038/s41467-024-50626-0 [paper, repository]

Multi-omic analysis of Huntington's disease reveals a compensatory astrocyte state.

Journal: Nature communications

Authors' code: Al-Dalahmah-lab/HD_astrocytes_paper (MIT)

Status: code verified, 6 files readable, 7 matches

[25461] doi:10.1038/s41467-024-50866-0 [paper, repository]

Light-responsive adipose-hypothalamus axis controls metabolic regulation.

Journal: Nature communications

Authors' code: mdlynes/Minispectrophotometer (no license), camara-h/Tsuji_2024 (no license)

Status: code verified, 3 files readable

[25462] doi:10.1038/s41467-024-51003-7 [paper, repository]

Multisensory gamma stimulation mitigates the effects of demyelination induced by cuprizone in male mice.

Journal: Nature communications

Authors' code: hms-dbmi-cellenics (no license)

Status: code verified

[25463] doi:10.1038/s41467-024-51041-1 [paper, repository]

Circular RNAs regulate neuron size and migration of midbrain dopamine neurons during development.

Journal: Nature communications

Authors' code: omiics-dk/long_read_circRNA (MIT)

Status: code verified, 20 files readable, 3 matches

[25464] doi:10.1038/s41467-024-51214-y [paper, repository]

Multi-omics and pharmacological characterization of patient-derived glioma cell lines.

Journal: Nature communications

Authors' code: mbourgey/scRNA_GBM (no license), CIBRChenLab/Patient-derived-Glioma-Cell-Lines (MIT), Zenodo 12532081 (CC-BY-4.0), biowumin/patient-derived-glioma-cell-lines (MIT)

Status: code verified, 45 files readable, 6 matches

[25465] doi:10.1038/s41467-024-51276-y [paper, data]

The DNA methylome of pediatric brain tumors appears shaped by structural variation and predicts survival.

Journal: Nature communications

Status: data only, 1 dataset cited

[25466] doi:10.1038/s42003-024-06665-w [paper, data]

Transcriptomic decoding of regional cortical vulnerability to major depressive disorder.

Journal: Communications biology

Status: data only, 1 dataset cited

[25467] doi:10.1073/pnas.2321659121 [paper, repository]

A computational study of how an α- to γ-motoneurone collateral can mitigate velocity-dependent stretch reflexes during voluntary movement.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10373302 (CC-BY-4.0), graceniyo/afferented-rhesus-macaque-arm-model-2023-code (MIT)

Status: code verified, 2 files readable

[25468] doi:10.1093/braincomms/fcae260 [paper]

Hippocampal adenosine-to-inosine RNA editing in sepsis: dynamic changes and influencing factors.

Journal: Brain communications

Status: data only

[25469] doi:10.1136/gutjnl-2023-331532 [paper, data]

Human enteric nervous system progenitor transplantation improves functional responses in Hirschsprung disease patient-derived tissue.

Journal: Gut

Status: data only, 1 dataset cited

[25470] doi:10.1162/imag_a_00266 [paper, repository]

Task-related modulation of event-related potentials does not reflect changes to sensory representations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 2bcgp (no license)

Status: code verified, 7 files readable, 2 matches

[25471] doi:10.1186/s12864-024-10653-z [paper, data]

The effect of acute social isolation on neural molecular responses in components of the social decision-making network.

Journal: BMC genomics

Status: data only, 1 dataset cited

[25472] doi:10.1371/journal.pcbi.1012376 [paper, repository]

Convolutional neural networks can identify brain interactions involved in decoding spatial auditory attention.

Journal: PLoS computational biology

Authors' code: kmahjoory/neuroread (no license)

Status: dead link

[25473] doi:10.1371/journal.pone.0308137 [paper, data]

EEG and ERP biosignatures of mild cognitive impairment for longitudinal monitoring of early cognitive decline in Alzheimer's disease.

Journal: PloS one

Status: data only, 1 dataset cited

[25474] doi:10.1371/journal.pone.0308329 [paper, repository]

Nonlinear latent representations of high-dimensional task-fMRI data: Unveiling cognitive and behavioral insights in heterogeneous spatial maps.

Journal: PloS one

Authors' code: mariam186/semi-supervised-3-D-autoencoder (no license), amarquand/PCNtoolkit (GPL-3.0)

Status: code verified, 132 files readable, 2 matches

[25475] doi:10.1523/eneuro.0413-23.2024 [paper]

Multiunit Frontal Eye Field Activity Codes the Visuomotor Transformation, But Not Gaze Prediction or Retrospective Target Memory, in a Delayed Saccade Task.

Journal: eNeuro

Status: code on request

[25476] doi:10.2196/57830 [paper]

Mapping Knowledge Landscapes and Emerging Trends in AI for Dementia Biomarkers: Bibliometric and Visualization Analysis.

Journal: Journal of medical Internet research

Status: code on request

Wednesday, 7 August 2024 (26 papers)

[25477] doi:10.1007/s10565-024-09909-x [paper, data]

Unraveling the molecular complexity: Wtap/Ythdf1 and Lcn2 in novel traumatic brain injury secondary injury mechanisms.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[25478] doi:10.1007/s12021-024-09679-1 [paper, repository]

AnNoBrainer, An Automated Annotation of Mouse Brain Images using Deep Learning.

Journal: Neuroinformatics

Authors' code: Merck/AnNoBrainer (no license)

Status: empty repository, 1 file readable

[25479] doi:10.1016/j.celrep.2024.114611 [paper, repository]

Vocalization modulates the mouse auditory cortex even in the absence of hearing.

Journal: Cell reports

Authors' code: pearsonlab/autoencoded-vocal-analysis (MIT)

Status: code verified, 32 files readable, 1 match

[25480] doi:10.1038/s41398-024-03035-2 [paper, repository]

Associations of alcohol and tobacco use with psychotic, depressive and developmental disorders revealed via multimodal neuroimaging.

Journal: Translational psychiatry

Authors' code: trendscenter.org/software/fit (no license)

Status: code verified

[25481] doi:10.1038/s41467-024-48897-8 [paper, data]

Male autism spectrum disorder is linked to brain aromatase disruption by prenatal BPA in multimodal investigations and 10HDA ameliorates the related mouse phenotype.

Journal: Nature communications

Status: data only, 1 dataset cited

[25482] doi:10.1038/s41467-024-50798-9 [paper, data]

A plastic aggrecan barrier modulated by peripheral energy state gates metabolic signal access to arcuate neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[25483] doi:10.1038/s41467-024-50826-8 [paper, repository]

A standardized image processing and data quality platform for rodent fMRI.

Journal: Nature communications

Authors' code: CoBrALab/RABIES (other), maartenmennes/ICA-AROMA (Apache-2.0), Gab-D-G/RABIES_paper_repro (no license), Zenodo 11122918 (CC-BY-4.0)

Status: code verified, 130 files readable, 31 matches

[25484] doi:10.1038/s41586-024-07739-9 [paper, repository]

Structure of the human dopamine transporter and mechanisms of inhibition.

Journal: Nature

Authors' code: Zenodo 11391488 (CC-BY-4.0)

Status: code verified

[25485] doi:10.1038/s41592-024-02374-8 [paper, repository]

The DNA-PAINT palette: a comprehensive performance analysis of fluorescent dyes.

Journal: Nature methods

Authors' code: PhilippSteen/Affine-transformation (MIT), PhilippSteen/DNA-PAINT_analysis (MIT), Zenodo 10960858 (CC-BY-4.0), jungmannlab/picasso (MIT)

Status: code verified, 140 files readable, 9 matches

[25486] doi:10.1038/s41598-024-69248-z [paper, data]

A visual representation of the hand in the resting somatomotor regions of the human brain.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25487] doi:10.1038/s42003-024-06648-x [paper, repository]

Contrastive machine learning reveals Parkinson's disease specific features associated with disease severity and progression.

Journal: Communications biology

Authors' code: zlpsophina/CVAE_VAE (no license), Zenodo 12788950 (CC-BY-4.0)

Status: code verified, 30 files readable, 11 matches

[25488] doi:10.1098/rsos.240616 [paper, repository]

Short-term dietary changes are reflected in the cerebral content of adult ring-billed gulls.

Journal: Royal Society open science

Authors' code: Zenodo 10969353 (MIT)

Status: code verified, 1 file readable, 8 matches

[25489] doi:10.1098/rspb.2024.0533 [paper, repository]

Olfactory learning in &lt;i&gt;Pieris brassicae&lt;/i&gt; butterflies is dependent on the intensity of a plant-derived oviposition cue.

Journal: Proceedings. Biological sciences

Authors' code: Zenodo 10778106 (MIT)

Status: code verified, 3 files readable, 1 match

[25490] doi:10.1126/sciadv.adj8862 [paper, repository]

The interferon γ pathway enhances pluripotency and X-chromosome reactivation in iPSC reprogramming.

Journal: Science advances

Authors' code: biocorecrg/allele_specific_RNAseq (no license), eblancoga/ASTA-Seq (GPL-3.0), Zenodo 10676879 (CC-BY-4.0)

Status: code verified, 13 files readable

[25491] doi:10.1126/sciadv.adl5722 [paper, data]

Insulin restores retinal ganglion cell functional connectivity and promotes visual recovery in glaucoma.

Journal: Science advances

Status: data only, 2 datasets cited

[25492] doi:10.1126/sciadv.adn1607 [paper, data]

Cell-specific cross-talk proteomics reveals cathepsin B signaling as a driver of glioblastoma malignancy near the subventricular zone.

Journal: Science advances

Status: data only, 1 dataset cited

[25493] doi:10.1186/s12873-024-01054-2 [paper, data]

Blood pressure variability and prognostic significance in traumatic brain injury: analysis of the eICU-CRD database.

Journal: BMC emergency medicine

Status: data only, 1 dataset cited

[25494] doi:10.1371/journal.pgen.1011362 [paper, data]

The kpc-1 3'UTR facilitates dendritic transport and translation efficiency of mRNAs for dendrite arborization of a mechanosensory neuron important for male courtship.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[25495] doi:10.3389/fnagi.2024.1398015 [paper, repository]

Second language learning in older adults modulates Stroop task performance and brain activation.

Journal: Frontiers in aging neuroscience

Authors' code: dhschultz29/L2_learning_in_older_adults (no license)

Status: empty repository, 1 file readable

[25496] doi:10.3389/fnana.2024.1434017 [paper, data]

Geometric morphometric analysis of the brainstem and cerebellum in Chiari I malformation.

Journal: Frontiers in neuroanatomy

Status: data only, 2 datasets cited

[25497] doi:10.3389/fnins.2024.1421680 [paper, data]

Beneficial effects of miR-132/212 deficiency in the zQ175 mouse model of Huntington's disease.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[25498] doi:10.3389/fnint.2024.1437585 [paper, repository]

Association of chronotype with language and episodic memory processing in children: implications for brain structure.

Journal: Frontiers in integrative neuroscience

Authors' code: OSF ht43q (no license)

Status: code verified, 1 file readable, 1 match

[25499] doi:10.3389/fphar.2024.1437445 [paper, data]

Effect of dexmedetomidine on ncRNA and mRNA profiles of cerebral ischemia-reperfusion injury in transient middle cerebral artery occlusion rats model.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[25500] doi:10.3390/brainsci14080792 [paper, data]

Echoes from Sensory Entrainment in Auditory Working Memory for Pitch.

Journal: Brain sciences

Status: data only, 1 dataset cited

[25501] doi:10.3390/diagnostics14161714 [paper, data]

Brain Tumor Detection and Classification Using an Optimized Convolutional Neural Network.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[25502] doi:10.7554/elife.83320 [paper, data]

Syntaxin-6 delays prion protein fibril formation and prolongs the presence of toxic aggregation intermediates.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 6 August 2024 (30 papers)

[25503] doi:10.1007/s10334-024-01194-3 [paper, data]

Fast bias-corrected conductivity mapping using stimulated echoes.

Journal: Magma (New York, N.Y.)

Status: data only, 2 datasets cited

[25504] doi:10.1016/j.celrep.2024.114595 [paper, repository]

Synaptotagmins 3 and 7 mediate the majority of asynchronous release from synapses in the cerebellum and hippocampus.

Journal: Cell reports

Authors' code: skylerjackman (no license)

Status: code verified

[25505] doi:10.1016/j.crmeth.2024.100831 [paper, repository]

Nova-ST: Nano-patterned ultra-dense platform for spatial transcriptomics.

Journal: Cell reports methods

Authors' code: aertslab/Nova-ST (no license), nova-st.aertslab.org (no license)

Status: code verified, 10 files readable, 6 matches

[25506] doi:10.1016/j.isci.2024.110687 [paper, repository]

Neuropeptidergic regulation of neuromuscular signaling in larval zebrafish alters swimming behavior and synaptic transmission.

Journal: iScience

Authors' code: MariusSeidenthal/zebrafish_angle_analysis (MIT)

Status: empty repository, 2 files readable

[25507] doi:10.1016/j.neuroimage.2024.120772 [paper, repository]

Stacked regressions and structured variance partitioning for interpretable brain maps.

Journal: NeuroImage

Authors' code: brainML/Stacking (no license), naturalscenesdataset.org (no license)

Status: code verified, 12 files readable

[25508] doi:10.1016/j.neuron.2024.07.007 [paper]

SYNGAP1 deficiency disrupts synaptic neoteny in xenotransplanted human cortical neurons in vivo.

Journal: Neuron

Status: code on request

[25509] doi:10.1016/j.omtm.2024.101312 [paper]

Combination AAV therapy with galectin-1 and SOD1 downregulation demonstrates superior therapeutic effect in a severe ALS mouse model.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[25510] doi:10.1021/acs.jmedchem.4c01193 [paper, data]

Development of VU6036864: A Triazolopyridine-Based High-Quality Antagonist Tool Compound of the M&lt;sub&gt;5&lt;/sub&gt; Muscarinic Acetylcholine Receptor.

Journal: Journal of medicinal chemistry

Status: data only, 1 dataset cited

[25511] doi:10.1038/s41398-024-03044-1 [paper, repository]

Single-cell multiomics analysis reveals cell/tissue-specific associations in bipolar disorder.

Journal: Translational psychiatry

Authors' code: weihuan12138/scmultiomics (no license)

Status: empty repository, 1 file readable

[25512] doi:10.1038/s41467-024-50717-y [paper, repository]

Prefrontal neuronal dynamics in the absence of task execution.

Journal: Nature communications

Authors' code: codeocean:2817512 (no license)

Status: code found, still to be checked

[25513] doi:10.1038/s41467-024-50771-6 [paper, data]

High-affinity agonism at the P2X&lt;sub&gt;7&lt;/sub&gt; receptor is mediated by three residues outside the orthosteric pocket.

Journal: Nature communications

Status: data only, 1 dataset cited

[25514] doi:10.1038/s41467-024-51065-7 [paper, repository]

Net synaptic drive of fast-spiking interneurons is inverted towards inhibition in human FCD I epilepsy.

Journal: Nature communications

Authors' code: flosfor/pvbs (GPL-3.0), BSP-Uniandes/RIPPLELAB (GPL-2.0)

Status: code verified, 1,475 files readable, 2 matches

[25515] doi:10.1038/s41593-024-01696-2 [paper, repository]

Orexin neurons mediate temptation-resistant voluntary exercise.

Journal: Nature neuroscience

Authors' code: OSF 8dyan (no license)

Status: empty repository, 1 file readable

[25516] doi:10.1038/s41598-024-65866-9 [paper, repository]

Demonstration that sublinear dendrites enable linearly non-separable computations.

Journal: Scientific reports

Authors' code: Zenodo 7875425 (CC-BY-4.0)

Status: code verified, 1 file readable

[25517] doi:10.1038/s41598-024-67535-3 [paper, repository]

Microstructural brain assessment in late-life depression and apathy using diffusion MRI multi-compartments models and tractometry.

Journal: Scientific reports

Authors' code: Inria-Empenn/Anima-Public (AGPL-3.0)

Status: code verified, 271 files readable, 6 matches

[25518] doi:10.1038/s41598-024-68003-8 [paper]

A non-memory-based functional neural framework for animal caching behavior.

Journal: Scientific reports

Status: code on request

[25519] doi:10.1038/s41598-024-68821-w [paper]

Effects of maternal exposure to biomass cooking fuel on birth size and body proportionality in full-term infants born by vaginal delivery.

Journal: Scientific reports

Status: code on request

[25520] doi:10.1038/s41598-024-69255-0 [paper, repository]

A single-nucleus transcriptomic atlas of medium spiny neurons in the rat nucleus accumbens.

Journal: Scientific reports

Authors' code: AllenInstitute/scrattch (BSD-2-Clause), martinjzhang/scDRS (MIT), LieberInstitute/10xPilot_snRNAseq-human (Artistic-2.0), CristLab/msn_subclustering (no license)

Status: code verified, 250 files readable, 7 matches

[25521] doi:10.1038/s43856-024-00572-1 [paper]

Touchless short-wave infrared imaging for dynamic rapid pupillometry and gaze estimation in closed eyes.

Journal: Communications medicine

Status: code on request

[25522] doi:10.1044/2024_jslhr-24-00046 [paper]

Neural Decoding of Spontaneous Overt and Intended Speech.

Journal: Journal of speech, language, and hearing research : JSLHR

Status: code on request

[25523] doi:10.1073/pnas.2400420121 [paper, data]

A therapeutic small molecule enhances γ-oscillations and improves cognition/memory in Alzheimer's disease model mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25524] doi:10.1093/nargab/lqae100 [paper, repository]

SIRV: spatial inference of RNA velocity at the single-cell resolution.

Journal: NAR genomics and bioinformatics

Authors' code: tabdelaal/SIRV (MIT), Zenodo 10641057 (CC-BY-4.0)

Status: code verified, 16 files readable, 6 matches

[25525] doi:10.1162/imag_a_00255 [paper, repository]

Gradual change of cortical representations with growing visual expertise for synthetic shapes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: cognitive-biology/DLDA (LGPL-2.1), doi:10.12751/nncn.bc2022.208 (no license)

Status: code verified, 18 files readable, 2 matches

[25526] doi:10.1162/imag_a_00256 [paper, repository]

The relationship between visual acuity loss and GABAergic inhibition in amblyopia.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: git.fmrib.ox.ac.uk/fsl/fsl_mrs (no license)

Status: code found, still to be checked

[25527] doi:10.1172/jci174661 [paper, repository]

Hif-2α programs oxygen chemosensitivity in chromaffin cells.

Journal: The Journal of clinical investigation

Authors' code: YoichiroSugimoto/20230620_Phd2KO_in_AM_and_CB (no license)

Status: code verified, 18 files readable, 1 match

[25528] doi:10.1371/journal.pone.0308132 [paper, data]

Oligodendroglia-to-pericyte conversion after lipopolysaccharide exposure is gender-dependent.

Journal: PloS one

Status: data only, 1 dataset cited

[25529] doi:10.1371/journal.pone.0308236 [paper, data]

G-Net: Implementing an enhanced brain tumor segmentation framework using semantic segmentation design.

Journal: PloS one

Status: data only, 1 dataset cited

[25530] doi:10.3389/fncom.2024.1432593 [paper, repository]

Multiscale modeling of neuronal dynamics in hippocampus CA1.

Journal: Frontiers in computational neuroscience

Authors' code: Zenodo 12653912 (CC-BY-4.0), Zenodo 12653911 (CC-BY-4.0)

Status: code verified, 16 files readable

[25531] doi:10.3389/fnins.2024.1432138 [paper, repository]

Real-time motion artifact suppression using convolution neural networks with penalty in fNIRS.

Journal: Frontiers in neuroscience

Authors' code: gitee.com/cognoholic/1-dcnnw-p (Apache-2.0)

Status: code verified, 4 files readable, 2 matches

[25532] doi:10.7554/elife.92595 [paper, data]

Signatures of Bayesian inference emerge from energy-efficient synapses.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 5 August 2024 (35 papers, 4 on this page)

[25533] doi:10.1007/s00401-024-02775-1 [paper, data]

Enhanced microglial dynamics and a paucity of tau seeding in the amyloid plaque microenvironment contribute to cognitive resilience in Alzheimer's disease.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[25534] doi:10.1016/j.ebiom.2024.105259 [paper, repository]

Machine learning of brain-specific biomarkers from EEG.

Journal: EBioMedicine

Authors' code: Roche/neuro-meeglet (Apache-2.0), Roche/neuro-meeglet-paper (Apache-2.0)

Status: code verified, 58 files readable, 13 matches

[25535] doi:10.1016/j.heliyon.2024.e35458 [paper, repository]

Synaptic ring attractor: A unified framework for attractor dynamics and multiple cues integration.

Journal: Heliyon

Authors' code: yaniChen99/Synaptic-RA (no license)

Status: code verified, 4 files readable

[25536] doi:10.1016/j.jare.2024.08.002 [paper, repository]

DeepB&lt;sup&gt;3&lt;/sup&gt;P: A transformer-based model for identifying blood-brain barrier penetrating peptides with data augmentation using feedback GAN.

Journal: Journal of advanced research

Authors' code: GreatChenLab/deepB3P (no license)

Status: code verified, 26 files readable, 1 match

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