Every paper, by date: page 116

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 116 of 200: 30 July 2024 to 20 July 2024.

Tuesday, 30 July 2024 (37 papers, 16 on this page)

[25761] doi:10.1073/pnas.2309876121 [paper, repository]

Recall tempo of Hebbian sequences depends on the interplay of Hebbian kernel with tutor signal timing.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: msf235/Recall-tempo-of-Hebbian-sequences (Unlicense)

Status: code verified, 10 files readable

[25762] doi:10.1073/pnas.2316021121 [paper, repository]

Cross-regional coordination of activity in the human brain during autobiographical self-referential processing.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: JRStieger/ConnectivityIndex (CC0-1.0)

Status: code verified, 7 files readable, 1 match

[25763] doi:10.1073/pnas.2320251121 [paper, data]

Longitudinal stability of individual brain plasticity patterns in blindness.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25764] doi:10.1088/2057-1976/ad6573 [paper, repository]

Adaptive fine-tuning based transfer learning for the identification of MGMT promoter methylation status.

Journal: Biomedical physics & engineering express

Authors' code: LabAIRT/SpotTune_MGMT_prediction (no license)

Status: code verified, 26 files readable, 7 matches

[25765] doi:10.1093/braincomms/fcae253 [paper, data]

Multivariate mapping of brain pathology: a step forward with stumbling blocks.

Journal: Brain communications

Status: data only, 1 dataset cited

[25766] doi:10.1117/1.nph.11.3.035005 [paper]

Label-free photoacoustic computed tomography of visually evoked responses in the primary visual cortex and four subcortical retinorecipient nuclei of anesthetized mice.

Journal: Neurophotonics

Status: code on request

[25767] doi:10.1364/boe.531210 [paper, repository]

Image post-processing for SILMAS: structured illumination light sheet microscopy with axial sweeping.

Journal: Biomedical optics express

Authors' code: figshare 25903291 (CC-BY-4.0), figshare 25903288 (CC-BY-4.0), figshare 25903294 (CC-BY-4.0)

Status: code verified, 3 files readable, 5 matches

[25768] doi:10.1523/eneuro.0014-24.2024 [paper, repository]

Development of a High-Throughput Pipeline to Characterize Microglia Morphological States at a Single-Cell Resolution.

Journal: eNeuro

Authors' code: ciernialab/MicrogliaMorphology (MIT), youtube.com/watch (no license), OSF 8t5c2 (no license), ciernialab/MicrogliaMorphologyR (other)

Status: code verified, 28 files readable, 20 matches

[25769] doi:10.1523/eneuro.0035-24.2024 [paper, repository]

Exploring Kainic Acid-Induced Alterations in Circular Tripartite Networks with Advanced Analysis Tools.

Journal: eNeuro

Authors' code: mathworks.com/matlabcentral/fileexchange (no license)

Status: code found, still to be checked

[25770] doi:10.3389/fmolb.2024.1359956 [paper, data]

Expression of calpastatin hcast 3-25 and activity of the calpain/calpastatin system in human glioblastoma stem cells: possible involvement of hcast 3-25 in cell differentiation.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[25771] doi:10.3389/fmolb.2024.1423503 [paper, data]

Candidate proteins interacting with cytoskeleton in cells from the basal airway epithelium <i>in vitro</i>.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[25772] doi:10.3389/fopht.2024.1428777 [paper]

High-throughput ultrastructural analysis of macular telangiectasia type 2.

Journal: Frontiers in ophthalmology

Status: code on request

[25773] doi:10.3390/ijms25158326 [paper, repository]

Exploring the PDZ, DUF, and LIM Domains of Pdlim5 in Dendrite Branching.

Journal: International journal of molecular sciences

Authors' code: deepmind/alphafold (Apache-2.0)

Status: code verified, 101 files readable

[25774] doi:10.3390/ijms25158354 [paper, data]

Serum Beta-Secretase 1 Activity Is a Potential Marker for the Differential Diagnosis between Alzheimer's Disease and Frontotemporal Dementia: A Pilot Study.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[25775] doi:10.7554/elife.91890 [paper, repository]

Serotonergic amplification of odor-evoked neural responses maps onto flexible behavioral outcomes.

Journal: eLife

Authors' code: figshare 22656154 (CC-BY-4.0)

Status: code verified, 37 files readable

[25776] doi:10.7717/peerj.17774 [paper, repository]

Neighborhood structure-guided brain functional networks estimation for mild cognitive impairment identification.

Journal: PeerJ

Authors' code: zhaotm/NSGBFN (no license), supp:PMC11296305/peerj-12-17774-s001.m (no license)

Status: code verified, 11 files readable

Monday, 29 July 2024 (28 papers)

[25777] doi:10.1016/j.celrep.2024.114559 [paper, repository]

A simple and scalable zebrafish model of Sonic hedgehog medulloblastoma.

Journal: Cell reports

Authors' code: HuntsmanCancerInstitute/hciR (no license)

Status: code verified, 53 files readable, 3 matches

[25778] doi:10.1016/j.neuron.2024.06.002 [paper, repository]

Rapid iPSC inclusionopathy models shed light on formation, consequence, and molecular subtype of α-synuclein inclusions.

Journal: Neuron

Authors' code: Zenodo 12574231 (CC-BY-4.0), Zenodo 12662455 (CC-BY-4.0), Zenodo 12662183 (CC-BY-4.0), Zenodo 12662477 (CC-BY-4.0), bioconductor.org/packages/release (no license), Zenodo 13381067 (CC-BY-4.0), Zenodo 12574230 (CC-BY-4.0)

Status: code verified, 32 files readable, 9 matches

[25779] doi:10.1038/s41386-024-01940-0 [paper, data]

Punishment-resistant alcohol intake is mediated by the nucleus accumbens shell in female rats.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[25780] doi:10.1038/s41467-024-50292-2 [paper, repository]

Longitudinal variation in resilient psychosocial functioning is associated with ongoing cortical myelination and functional reorganization during adolescence.

Journal: Nature communications

Authors' code: cng-lab/cngopen (MIT), Zenodo 11486553 (CC-BY-4.0), brainspace.readthedocs.io (no license), scottclowe/cbrewer2 (Apache-2.0), mica-mni/micaopen (GPL-3.0), Zenodo 1412054 (MIT), kwagstyl/surface_tools (MIT)

Status: code verified, 432 files readable, 14 matches

[25781] doi:10.1038/s41564-024-01750-6 [paper, repository]

Engineering Toxoplasma gondii secretion systems for intracellular delivery of multiple large therapeutic proteins to neurons.

Journal: Nature microbiology

Authors' code: aecon/toxoplasma3D (MIT), shaharbr/Bracha_et_al_2024 (MIT), GiuseppeTestaLab/toxo-organoids (MIT)

Status: code verified, 26 files readable, 21 matches

[25782] doi:10.1038/s41593-024-01704-5 [paper, repository]

Population-level coding of avoidance learning in medial prefrontal cortex.

Journal: Nature neuroscience

Authors' code: Zenodo 11283463 (CC-BY-4.0), behret/paper_code_active_avoidance (no license)

Status: code verified, 432 files readable, 9 matches

[25783] doi:10.1038/s41598-024-65337-1 [paper, repository]

A virtual patient simulation modeling the neural and perceptual effects of human visual cortical stimulation, from pulse trains to percepts.

Journal: Scientific reports

Authors' code: VisCog/p2p-cortical (no license)

Status: code verified, 63 files readable, 23 matches

[25784] doi:10.1038/s41598-024-67013-w [paper, data]

Harnessing the frontal aslant tract's structure to assess its involvement in cognitive functions: new insights from 7-T diffusion imaging.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25785] doi:10.1038/s41598-024-67641-2 [paper, repository]

Epigenetic aging studies of pair bonding in prairie voles.

Journal: Scientific reports

Authors' code: shorvath/mammalianmethylationconsortium (MIT), Zenodo 7574747 (other-open)

Status: code verified, 50 files readable, 8 matches

[25786] doi:10.1038/s44319-024-00218-2 [paper, data]

IMPDH2 filaments protect from neurodegeneration in AMPD2 deficiency.

Journal: EMBO reports

Status: data only, 1 dataset cited

[25787] doi:10.1093/braincomms/fcae234 [paper, repository]

Longitudinal network-based brain grey matter MRI measures are clinically relevant and sensitive to treatment effects in multiple sclerosis.

Journal: Brain communications

Authors' code: co-el/Longitudinal_individual_level_structural_network (no license)

Status: code verified, 4 files readable, 2 matches

[25788] doi:10.1109/access.2024.3435526 [paper, repository]

Identifying the Relationship Structure Among Multiple Datasets Using Independent Vector Analysis: Application to Multi-Task fMRI Data.

Journal: IEEE access : practical innovations, open solutions

Authors' code: SSTGroup/relationship_structure_identification (MIT), SSTGroup/independent_vector_analysis (MIT)

Status: code verified, 27 files readable, 2 matches

[25789] doi:10.1162/imag_a_00240 [paper, repository]

Widespread, perception-related information in the human brain scales with levels of consciousness.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: avigotsky/widespread_signal (no license)

Status: dead link

[25790] doi:10.1177/10731911241266306 [paper, repository]

Portable Touchscreen Assessment of Motor Skill: A Registered Report of the Reliability and Validity of EDNA MoTap.

Journal: Assessment

Authors' code: OSF esjby (no license)

Status: code verified, 3 files readable, 1 match

[25791] doi:10.1186/s12915-024-01953-7 [paper, repository]

Single-mitochondrion sequencing uncovers distinct mutational patterns and heteroplasmy landscape in mouse astrocytes and neurons.

Journal: BMC biology

Authors' code: Zenodo 12210103 (CC-BY-4.0), kimpenn/smito-analysis (CC-BY-4.0)

Status: code verified, 46 files readable, 17 matches

[25792] doi:10.1186/s12915-024-01955-5 [paper, repository]

Diversely evolved xibalbin variants from remipede venom inhibit potassium channels and activate PKA-II and Erk1/2 signaling.

Journal: BMC biology

Authors' code: Rostlab/RostSpace (AGPL-3.0)

Status: code verified, 16 files readable, 1 match

[25793] doi:10.1186/s13287-024-03847-5 [paper, data]

Secretome from iPSC-derived MSCs exerts proangiogenic and immunosuppressive effects to alleviate radiation-induced vascular endothelial cell damage.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[25794] doi:10.1186/s13567-024-01350-6 [paper, data]

Transmission of Norwegian reindeer CWD to sheep by intracerebral inoculation results in an unusual phenotype and prion distribution.

Journal: Veterinary research

Status: data only, 2 datasets cited

[25795] doi:10.1371/journal.pone.0305872 [paper, repository]

Kalman filtering to reduce measurement noise of sample entropy: An electroencephalographic study.

Journal: PloS one

Authors' code: nwu-zn/KF-EN (MIT)

Status: code verified, 10 files readable, 2 matches

[25796] doi:10.1523/eneuro.0125-24.2024 [paper, repository]

Early-Life Resource Scarcity in Mice Does Not Alter Adult Corticosterone or Preovulatory Luteinizing Hormone Surge Responses to Acute Psychosocial Stress.

Journal: eNeuro

Authors' code: um-mip/coding-project (no license), gibson-amandag/LBN (no license)

Status: code verified, 225 files readable, 15 matches

[25797] doi:10.1523/eneuro.0203-24.2024 [paper, repository]

Impact of Unitary Synaptic Inhibition on Spike Timing in Ventral Tegmental Area Dopamine Neurons.

Journal: eNeuro

Authors' code: higgsm/unitary-ipsc (no license)

Status: code verified, 10 files readable, 10 matches

[25798] doi:10.21037/tp-24-211 [paper, data]

Screening for biomarkers of tuberous sclerosis complex-associated epilepsy: a bioinformatics analysis.

Journal: Translational pediatrics

Status: data only, 1 dataset cited

[25799] doi:10.23736/s1973-9087.24.08446-6 [paper]

Learning-to-learn as a metacognitive correlate of functional outcomes after stroke: a cohort study.

Journal: European journal of physical and rehabilitation medicine

Status: code on request

[25800] doi:10.3389/fncel.2024.1438101 [paper, data]

A novel autism-associated <i>KCNB1</i> mutation dramatically slows Kv2.1 potassium channel activation, deactivation and inactivation.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[25801] doi:10.3389/frdem.2024.1402091 [paper, data]

Traffic-related air pollution and &lt;i&gt;APOE4&lt;/i&gt; can synergistically affect hippocampal volume in older women: new findings from UK Biobank.

Journal: Frontiers in dementia

Status: data only, 1 dataset cited

[25802] doi:10.3390/s24154908 [paper, data]

A Comparative Study of Causality Detection Methods in Root Cause Diagnosis: From Industrial Processes to Brain Networks.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[25803] doi:10.3390/s24154920 [paper, data]

Latent Prototype-Based Clustering: A Novel Exploratory Electroencephalography Analysis Approach.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[25804] doi:10.4103/nrr.nrr-d-24-00063 [paper, data]

Dynamic development of microglia and macrophages after spinal cord injury.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

Sunday, 28 July 2024 (3 papers)

[25805] doi:10.1002/alz.14123 [paper, repository]

Structure-function coupling reveals the brain hierarchical structure dysfunction in Alzheimer's disease: A multicenter study.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: gpreti/GSP_StructuralDecouplingIndex (Apache-2.0)

Status: code verified, 40 files readable, 1 match

[25806] doi:10.1038/s41531-024-00750-x [paper, repository]

Human tripartite cortical network model for temporal assessment of alpha-synuclein aggregation and propagation in Parkinson's Disease.

Journal: NPJ Parkinson's disease

Authors' code: VVuolanto/Calcium-Imaging (no license), gin.g-node.org/neurogroup_tuni/comparative_mea_dataset (CC-BY-4.0)

Status: code verified, 31 files readable, 4 matches

[25807] doi:10.1038/s42003-024-06614-7 [paper, data]

Brainstorming: Interbrain coupling in groups forms the basis of group creativity.

Journal: Communications biology

Status: code on request, 2 datasets cited

Saturday, 27 July 2024 (14 papers)

[25808] doi:10.1007/s12672-024-01172-0 [paper, data]

Molecular and clinical characterization of atypical central neurocytomas: implications for diagnosis and treatment strategies.

Journal: Discover oncology

Status: data only, 1 dataset cited

[25809] doi:10.1016/j.cortex.2024.05.023 [paper, repository]

Establishing a standardised approach for the measurement of neonatal noxious-evoked brain activity in response to an acute somatic nociceptive heel lance stimulus.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Authors' code: Zenodo 12682219 (CC-BY-4.0), OSF 6uhze (no license), roshnimansfield/nnrf_validitystudy (Apache-2.0)

Status: code verified, 30 files readable, 1 match

[25810] doi:10.1016/j.isci.2024.110600 [paper]

HDAC1 and HDAC2 orchestrate Wnt signaling to regulate neural progenitor transition during brain development.

Journal: iScience

Status: code on request

[25811] doi:10.1016/j.isci.2024.110602 [paper]

Proteome and ubiquitinome analyses of the brain cortex in K18-<i>hACE2</i> mice infected with SARS-CoV-2.

Journal: iScience

Status: code on request

[25812] doi:10.1038/s41398-024-03029-0 [paper]

High-order brain interactions in ketamine during rest and task: a double-blinded cross-over design using portable EEG on male participants.

Journal: Translational psychiatry

Status: code on request

[25813] doi:10.1038/s41467-024-50399-6 [paper, repository]

High-throughput sensitive screening of small molecule modulators of microexon alternative splicing using dual Nano and Firefly luciferase reporters.

Journal: Nature communications

Authors' code: vastgroup/vast-tools (MIT), UBrau/ProcessDE (GPL-3.0), UBrau/ProcessVast (GPL-3.0), Zenodo 10265546 (CC-BY-4.0), Zenodo 10407129 (CC-BY-4.0)

Status: code verified, 52 files readable, 4 matches

[25814] doi:10.1038/s41467-024-50466-y [paper, repository]

Adenosine triggers early astrocyte reactivity that provokes microglial responses and drives the pathogenesis of sepsis-associated encephalopathy in mice.

Journal: Nature communications

Authors' code: qilinguo1005/Adenosine-triggers-early-astrocyte-reactivity (no license)

Status: code verified, 4 files readable, 1 match

[25815] doi:10.1038/s41467-024-50545-0 [paper, repository]

Neural correlates of perisaccadic visual mislocalization in extrastriate cortex.

Journal: Nature communications

Authors' code: nnategh/SVGLM (MIT), nnategh/Neural_Correlates_of_Mislocalization (no license)

Status: code verified, 75 files readable, 5 matches

[25816] doi:10.1038/s41467-024-50728-9 [paper, repository]

High-throughput analysis of dendrite and axonal arbors reveals transcriptomic correlates of neuroanatomy.

Journal: Nature communications

Authors' code: benjaminpatrickevans/harmonicmeanp (no license), ogliko/patchseq-autorecon (no license), rhngla/topo-preserve-fastmarching (MIT), Zenodo 12215416 (CC-BY-4.0)

Status: code verified, 70 files readable, 13 matches

[25817] doi:10.1038/s41598-024-67537-1 [paper, data]

Elucidating Microglial Heterogeneity and Functions in Alzheimer's Disease Using Single-cell Analysis and Convolutional Neural Network Disease Model Construction.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[25818] doi:10.1038/s42003-024-06593-9 [paper, data]

Streams of conscious visual experience.

Journal: Communications biology

Status: data only, 3 datasets cited

[25819] doi:10.1117/1.nph.11.3.035004 [paper, repository]

Adjusting effective multiplicity ( M eff ) for family-wise error rate in functional near-infrared spectroscopy data with a small sample size.

Journal: Neurophotonics

Authors' code: Dan-brain-Lab (no license)

Status: code verified

[25820] doi:10.1186/s12974-024-03182-9 [paper, data]

Nanoligomers targeting NF-κB and NLRP3 reduce neuroinflammation and improve cognitive function with aging and tauopathy.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[25821] doi:10.1186/s13293-024-00635-x [paper, repository]

The impact of sex on gene expression in the brain of schizophrenic patients: a systematic review and meta-analysis of transcriptomic studies.

Journal: Biology of sex differences

Authors' code: Zenodo 7778277 (CC-BY-4.0)

Status: code verified

Friday, 26 July 2024 (27 papers)

[25822] doi:10.1007/s11064-024-04213-w [paper, data]

LINC00894 Regulates Cerebral Ischemia/Reperfusion Injury by Stabilizing EIF5 and Facilitating ATF4-Mediated Induction of FGF21 and ACOD1 Expression.

Journal: Neurochemical research

Status: data only, 1 dataset cited

[25823] doi:10.1016/j.celrep.2024.114495 [paper]

Movement-related increases in subthalamic activity optimize locomotion.

Journal: Cell reports

Status: code on request

[25824] doi:10.1016/j.xcrm.2024.101659 [paper, repository]

Isogenic patient-derived organoids reveal early neurodevelopmental defects in spinal muscular atrophy initiation.

Journal: Cell reports. Medicine

Authors' code: Rodriguez-MuelaLab/Grass-et-al-2024 (no license), lorenzobonaguro/Grass_et_al_2023_SMA (no license)

Status: code verified, 3 files readable, 4 matches

[25825] doi:10.1038/s41467-024-49889-4 [paper, repository]

Spiking attractor model of motor cortex explains modulation of neural and behavioral variability by prior target information.

Journal: Nature communications

Authors' code: doi:10.12751/g-node.rz77m8 (no license), nawrotlab/ClusteredNetwork_pub (no license), Zenodo 11353864 (CC-BY-4.0)

Status: code verified, 50 files readable, 2 matches

[25826] doi:10.1038/s41467-024-50163-w [paper, repository]

A transthalamic pathway crucial for perception.

Journal: Nature communications

Authors' code: jvoigts/whisker_tracking (GPL-2.0), sdemyanov/ConvNet (no license), mo-brainer/Transthalamic_2024 (no license)

Status: code verified, 167 files readable, 8 matches

[25827] doi:10.1038/s41467-024-50306-z [paper, repository]

Demixing fluorescence time traces transmitted by multimode fibers.

Journal: Nature communications

Authors' code: comediaLKB/DemixedFiberPhotometry (GPL-3.0), RimoliCV/NMF_DemixedFiberPhotometry (GPL-3.0), laboGigan/SpeckledNeuronsControl (GPL-3.0), Zenodo 12125030 (CC-BY-4.0)

Status: code verified, 23 files readable, 4 matches

[25828] doi:10.1038/s41467-024-50496-6 [paper, data]

Tunable anti-ambipolar vertical bilayer organic electrochemical transistor enable neuromorphic retinal pathway.

Journal: Nature communications

Status: data only, 1 dataset cited

[25829] doi:10.1038/s41467-024-50546-z [paper, repository]

Functional architecture of intracellular oscillations in hippocampal dendrites.

Journal: Nature communications

Authors' code: Zenodo 11215569 (CC-BY-4.0)

Status: code verified

[25830] doi:10.1038/s41531-024-00749-4 [paper, repository]

Characterizing a complex CT-rich haplotype in intron 4 of SNCA using large-scale targeted amplicon long-read sequencing.

Journal: NPJ Parkinson's disease

Authors' code: neurogenetics/snca_intron4_sv (no license)

Status: dead link

[25831] doi:10.1038/s41598-024-67722-2 [paper, repository]

Detection of diffusely abnormal white matter in multiple sclerosis on multiparametric brain MRI using semi-supervised deep learning.

Journal: Scientific reports

Authors' code: uthmri (no license)

Status: code verified

[25832] doi:10.1038/s41598-024-68291-0 [paper]

A data-centric machine learning approach to improve prediction of glioma grades using low-imbalance TCGA data.

Journal: Scientific reports

Status: code on request

[25833] doi:10.1038/s44271-024-00119-z [paper, repository]

Anchor objects drive realism while diagnostic objects drive categorization in GAN generated scenes.

Journal: Communications psychology

Authors' code: OSF x2rbq (no license)

Status: code verified, 9 files readable, 7 matches

[25834] doi:10.1073/pnas.2310120121 [paper, repository]

An ankyrin G-binding motif mediates TRAAK periodic localization at axon initial segments of hippocampal pyramidal neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SamKVs/napari-k2-WaveBreaker (BSD-3-Clause)

Status: code verified, 11 files readable

[25835] doi:10.1073/pnas.2315599121 [paper, repository]

Auditory hair cells and spiral ganglion neurons regenerate synapses with refined release properties in vitro.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi.gin.g-node.org/10.12751/g-node.ylt20r (no license)

Status: code verified

[25836] doi:10.1093/braincomms/fcae251 [paper, repository]

Ground-truth validation of uni- and multivariate lesion inference approaches.

Journal: Brain communications

Authors' code: kuffmode/msa (MIT), caromalherbe/MSA-ground-truth (no license)

Status: code verified, 29 files readable

[25837] doi:10.1101/2024.07.23.604831 [paper, repository]

Neurocognitive characteristics of perceptual feedback processing differ in autism

Journal: bioRxiv (preprint)

Authors' code: auditory-predictive-coding/erp-adaptation (no license), kiradust/asd-cat (no license)

Status: code verified, 362 files readable, 13 matches

[25838] doi:10.1111/ene.16421 [paper, repository]

Global functional connectivity reorganization reflects cognitive processing speed deficits and fatigue in multiple sclerosis.

Journal: European journal of neurology

Authors' code: pavelhok/calculate_kd (GPL-3.0)

Status: code verified, 3 files readable

[25839] doi:10.1162/imag_a_00222 [paper, repository]

Challenges in multi-task learning for fMRI-based diagnosis: Benefits for psychiatric conditions and CNVs would likely require thousands of patients.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: labjacquemont/MIND-GENESPARALLELCNV (no license), harveyaa/neuropsych_mtl (no license), Zenodo 3497400 (cc-by-2.0)

Status: code verified, 222 files readable, 10 matches

[25840] doi:10.1162/imag_a_00242 [paper, repository]

Perceptual foundation and extension to phase tagging for rapid invisible frequency tagging (RIFT).

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Spaak/rift-phase-and-visibility (BSD-3-Clause)

Status: code verified, 53 files readable, 16 matches

[25841] doi:10.1242/dev.203062 [paper, data]

Mycb and Mych stimulate Müller glial cell reprogramming and proliferation in the uninjured and injured zebrafish retina.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[25842] doi:10.1371/journal.pbio.3002752 [paper, repository]

Correction: GABAergic regulation of striatal spiny projection neurons depends upon their activity state.

Journal: PLoS biology

Authors' code: Zenodo 10386496 (CC-BY-4.0), Zenodo 10162264 (CC-BY-4.0), vernonclarke/spnfinal (no license)

Status: code verified, 230 files readable

[25843] doi:10.1371/journal.pone.0306220 [paper, data]

Comprehensive integrated single-cell RNA sequencing analysis of brain metastasis and glioma microenvironment: Contrasting heterogeneity landscapes.

Journal: PloS one

Status: data only, 2 datasets cited

[25844] doi:10.1523/eneuro.0228-24.2024 [paper, repository]

Reading Reshapes Stimulus Selectivity in the Visual Word Form Area.

Journal: eNeuro

Authors' code: OSF 2t86c (no license)

Status: code verified, 23 files readable, 5 matches

[25845] doi:10.3390/brainsci14080752 [paper, repository]

Neural Dynamics of Processing Inflectional Morphology: An fMRI Study on Korean Inflected Verbs.

Journal: Brain sciences

Authors' code: fil.ion.ucl.ac.uk/spm/software (no license)

Status: code verified

[25846] doi:10.3390/brainsci14080753 [paper, data]

Neural Substrates for Early Data Reduction in Fast Vision: A Psychophysical Investigation.

Journal: Brain sciences

Status: data only, 1 dataset cited

[25847] doi:10.7554/elife.88261 [paper, repository]

The scheduling of adolescence with Netrin-1 and UNC5C.

Journal: eLife

Authors' code: OSF du3h4 (no license)

Status: code verified, 2 files readable, 2 matches

[25848] doi:10.7554/elife.89986 [paper, data]

Cholinergic input to mouse visual cortex signals a movement state and acutely enhances layer 5 responsiveness.

Journal: eLife

Status: data only, 2 datasets cited

Thursday, 25 July 2024 (23 papers)

[25849] doi:10.1016/j.celrep.2024.114531 [paper, repository]

The chemokine Cxcl14 regulates interneuron differentiation in layer I of the somatosensory cortex.

Journal: Cell reports

Authors' code: ackman678/CalciumDX (GPL-2.0)

Status: code verified, 178 files readable, 3 matches

[25850] doi:10.1016/j.heliyon.2024.e34910 [paper, data]

Structural parameters are superior to eigenvector centrality in detecting progressive supranuclear palsy with machine learning & multimodal MRI.

Journal: Heliyon

Status: code on request, 1 dataset cited

[25851] doi:10.1016/j.isci.2024.110585 [paper]

Reiterated male-to-female violence disrupts hippocampal estrogen receptor β expression, prompting anxiety-like behavior.

Journal: iScience

Status: code on request

[25852] doi:10.1016/j.nicl.2024.103646 [paper, repository]

Diffusion tensor analysis of white matter tracts is prognostic of persisting post-concussion symptoms in collegiate athletes.

Journal: NeuroImage. Clinical

Authors' code: brainlife.io/project/63b2ecb0daffe2c2407ee3c5 (no license), Nicholas-Port/Predicting-Persistent-Post-Concussion-Symptoms (no license)

Status: code verified, 7 files readable, 3 matches

[25853] doi:10.1016/j.stemcr.2024.06.013 [paper, data]

Human microglial cells as a therapeutic target in a neurodevelopmental disease model.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[25854] doi:10.1038/s41467-024-50113-6 [paper, repository]

Oxytocin induces the formation of distinctive cortical representations and cognitions biased toward familiar mice.

Journal: Nature communications

Authors' code: IoSR-Surrey/MatlabToolbox (MIT), KelschLAB/OXT-Wolf (MIT), Zenodo 11302119 (CC-BY-4.0)

Status: code verified, 95 files readable, 8 matches

[25855] doi:10.1038/s41467-024-50540-5 [paper, data]

Apelin modulates inflammation and leukocyte recruitment in experimental autoimmune encephalomyelitis.

Journal: Nature communications

Status: data only, 1 dataset cited

[25856] doi:10.1038/s41598-024-67005-w [paper, repository]

Chimpanzee utterances refute purported missing links for novel vocalizations and syllabic speech.

Journal: Scientific reports

Authors' code: Zenodo 2593234 (cc-by-3.0), cldf-datasets/phoible (CC-BY-4.0)

Status: code verified, 9 files readable

[25857] doi:10.1038/s42003-024-06570-2 [paper, data]

Endoplasmic reticulum unfolded protein response transcriptional targets of XBP-1s mediate rescue from tauopathy.

Journal: Communications biology

Status: data only, 1 dataset cited

[25858] doi:10.1073/pnas.2400678121 [paper, data]

Aversive memories can be weakened during human sleep via the reactivation of positive interfering memories.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25859] doi:10.1073/pnas.2406655121 [paper, data]

Lack of evidence for direct ligand-gated ion channel activity of GluD receptors.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25860] doi:10.1080/22221751.2024.2382235 [paper, data]

Enterovirus-A71 preferentially infects and replicates in human motor neurons, inducing neurodegeneration by ferroptosis.

Journal: Emerging microbes & infections

Status: data only, 2 datasets cited

[25861] doi:10.1101/2024.07.25.605128 [paper, repository]

Environmental stiffness regulates neuronal maturation via Piezo1-mediated TTR activity

Journal: bioRxiv (preprint)

Authors' code: Zenodo 17154501 (MIT), erkannt/cell-activity-from-calcium-imaging (MIT), Zenodo 17154500 (MIT), Zenodo 17154456 (CC-BY-4.0), erkannt/patchclamp-analysis (no license), Zenodo 17154457 (CC-BY-4.0), Zenodo 17154451 (CC-BY-4.0), erkannt/automated-scholl-analysis (no license), Zenodo 17154450 (CC-BY-4.0)

Status: code verified, 90 files readable

[25862] doi:10.1186/s12880-024-01360-y [paper, repository]

Advancing ASD identification with neuroimaging: a novel GARL methodology integrating Deep Q-Learning and generative adversarial networks.

Journal: BMC medical imaging

Authors' code: FeiYee/Generative-Adversarial-Reinforcement-Learning (no license)

Status: code verified, 6 files readable, 2 matches

[25863] doi:10.1371/journal.pone.0306078 [paper, repository]

Analysis of the effect of motion on highly accelerated 3D FatNavs in 3D brain images acquired at 3T.

Journal: PloS one

Authors' code: dgallichan/retroMoCoBox (GPL-3.0)

Status: code verified, 345 files readable, 5 matches

[25864] doi:10.1371/journal.pone.0307317 [paper, data]

A deep learning framework for the early detection of multi-retinal diseases.

Journal: PloS one

Status: data only, 7 datasets cited

[25865] doi:10.21500/20112084.7329 [paper, repository]

SynchroLINNce: Toolbox for Neural Synchronization and Desynchronization Assessment in Epilepsy Animal Models.

Journal: International journal of psychological research

Authors' code: sofiamafrodrigues (no license)

Status: code verified

[25866] doi:10.3389/fnhum.2024.1385624 [paper, repository]

Measuring information alignment in hyperscanning research with representational analyses: moving beyond interbrain synchrony.

Journal: Frontiers in human neuroscience

Authors' code: OSF etx64 (no license)

Status: code verified, 7 files readable, 2 matches

[25867] doi:10.3390/ijms25158086 [paper, repository]

Severe Hypothermia Induces Ferroptosis in Cerebral Cortical Nerve Cells.

Journal: International journal of molecular sciences

Authors' code: igordot/msigdbr (other)

Status: code verified, 14 files readable

[25868] doi:10.3390/molecules29153478 [paper, data]

Molecular Hybrid Design, Synthesis, In Vitro Cytotoxicity, In Silico ADME and Molecular Docking Studies of New Benzoate Ester-Linked Arylsulfonyl Hydrazones.

Journal: Molecules (Basel, Switzerland)

Status: data only, 1 dataset cited

[25869] doi:10.3390/s24154847 [paper, repository]

Hybrid Integrated Wearable Patch for Brain EEG-fNIRS Monitoring.

Journal: Sensors (Basel, Switzerland)

Authors' code: Shirakami114514/Hybrid-integrated-wearable-patch-for-brain-EEG-fNIRS-monitoring (no license)

Status: code verified, 11 files readable

[25870] doi:10.7554/elife.93077 [paper, data]

A syngeneic spontaneous zebrafish model of <i>tp53</i>-deficient, EGFR^vIII, and PI3KCA^H1047R-driven glioblastoma reveals inhibitory roles for inflammation during tumor initiation and relapse in vivo.

Journal: eLife

Status: data only, 1 dataset cited

[25871] doi:10.7554/elife.96041 [paper, data]

Spatiotemporal changes in Netrin/Dscam1 signaling dictate axonal projection direction in <i>Drosophila</i> small ventral lateral clock neurons.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 24 July 2024 (40 papers)

[25872] doi:10.1002/alz.14115 [paper, repository]

A genome-wide association meta-analysis of all-cause and vascular dementia.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: wouterpeyrot/CCGWAS (no license), NathanSkene/MAGMA_Celltyping (no license)

Status: code verified, 161 files readable, 3 matches

[25873] doi:10.1007/s12194-024-00827-5 [paper, data]

Investigation of distributed learning for automated lesion detection in head MR images.

Journal: Radiological physics and technology

Status: data only, 1 dataset cited

[25874] doi:10.1016/j.bpj.2024.07.024 [paper, repository]

Receptor binding and tortuosity explain morphogen local-to-global diffusion coefficient transition.

Journal: Biophysical journal

Authors' code: TimSaundersLab (no license)

Status: code verified

[25875] doi:10.1016/j.xcrm.2024.101658 [paper]

Myeloid cells coordinately induce glioma cell-intrinsic and cell-extrinsic pathways for chemoresistance via GP130 signaling.

Journal: Cell reports. Medicine

Status: code on request

[25876] doi:10.1038/s41380-024-02661-y [paper, repository]

Neurocognitive profiles of 22q11.2 and 16p11.2 deletions and duplications.

Journal: Molecular psychiatry

Authors' code: upenn/G2MH (no license)

Status: code verified, 4 files readable, 1 match

[25877] doi:10.1038/s41398-024-03021-8 [paper]

An exploratory study of the damage markers NfL, GFAP, and t-Tau, in cerebrospinal fluid and other findings from a patient cohort enriched for suspected autoimmune psychiatric disease.

Journal: Translational psychiatry

Status: code on request

[25878] doi:10.1038/s41467-024-50095-5 [paper, data]

Therapeutic strategy for spinal muscular atrophy by combining gene supplementation and genome editing.

Journal: Nature communications

Status: data only, 1 dataset cited

[25879] doi:10.1038/s41467-024-50299-9 [paper, repository]

Spatially and temporally probing distinctive glycerophospholipid alterations in Alzheimer's disease mouse brain via high-resolution ion mobility-enabled sn-position resolved lipidomics.

Journal: Nature communications

Authors' code: lingjunli-research/Glycerophospholipid-CCS (MIT), Zenodo 12351060 (CC-BY-4.0)

Status: code verified, 4 files readable

[25880] doi:10.1038/s41467-024-50310-3 [paper, repository]

Modeling short visual events through the BOLD moments video fMRI dataset and metadata.

Journal: Nature communications

Authors' code: pbw-Berwin/M4-pretrained (no license), blahner/BOLDMomentsDataset (MIT)

Status: code verified, 38 files readable, 17 matches

[25881] doi:10.1038/s41467-024-50354-5 [paper, data]

NMNAT2 is a druggable target to drive neuronal NAD production.

Journal: Nature communications

Status: data only, 2 datasets cited

[25882] doi:10.1038/s41467-024-50386-x [paper, repository]

Sexual size dimorphism in mammals is associated with changes in the size of gene families related to brain development.

Journal: Nature communications

Authors' code: animazum/SSD_genefamilysize (no license)

Status: code verified, 16 files readable, 6 matches

[25883] doi:10.1038/s41467-024-50465-z [paper, data]

Single-nucleus RNA sequencing reveals glial cell type-specific responses to ischemic stroke in male rodents.

Journal: Nature communications

Status: data only, 1 dataset cited

[25884] doi:10.1038/s41467-024-50488-6 [paper, data]

Adaptative machine vision with microsecond-level accurate perception beyond human retina.

Journal: Nature communications

Status: data only, 1 dataset cited

[25885] doi:10.1038/s41467-024-50554-z [paper, data]

Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level.

Journal: Nature communications

Status: data only, 1 dataset cited

[25886] doi:10.1038/s41586-024-07606-7 [paper, repository]

Single-cell multiregion dissection of Alzheimer's disease.

Journal: Nature

Authors' code: cboix/admultiregion_analysis (no license), KellisLab/scdemon (GPL-3.0), Zenodo 11051020 (CC-BY-4.0)

Status: code verified, 787 files readable, 40 matches

[25887] doi:10.1038/s41586-024-07740-2 [paper, repository]

Shifts in receptors during submergence of an encephalitic arbovirus.

Journal: Nature

Authors' code: wanyuvirus/Li_et_al.-Arivis (CC0-1.0)

Status: empty repository, 2 files readable

[25888] doi:10.1038/s41586-024-07745-x [paper, data]

Human TMEFF1 is a restriction factor for herpes simplex virus in the brain.

Journal: Nature

Status: data only, 3 datasets cited

[25889] doi:10.1038/s41586-024-07816-z [paper, repository]

Neural circuit basis of placebo pain relief.

Journal: Nature

Authors' code: ScherrerLab/PontineNucleus2024 (no license), schnitzer-lab/EXTRACT-public (MIT)

Status: code verified, 179 files readable, 7 matches

[25890] doi:10.1038/s41598-024-66830-3 [paper, repository]

Intergenerational effects of racism on amygdala and hippocampus resting state functional connectivity.

Journal: Scientific reports

Authors' code: KralTRA/BEE-resting-fMRI (GPL-3.0), OSF wunrm (no license)

Status: code verified, 4 files readable

[25891] doi:10.1038/s41598-024-67890-1 [paper, data]

Investigating the molecular mechanisms underlying the co-occurrence of Parkinson's disease and inflammatory bowel disease through the integration of multiple datasets.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25892] doi:10.1038/s41598-024-68062-x [paper, data]

Gnao1 is a molecular switch that regulates the Rho signaling pathway in differentiating neurons.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25893] doi:10.1073/pnas.2322869121 [paper, repository]

Beta and theta oscillations track effort and previous reward in the human basal ganglia and prefrontal cortex during decision making.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hoycw/PRJ_OFC_squeeze (no license)

Status: code verified, 208 files readable, 10 matches

[25894] doi:10.1073/pnas.2400339121 [paper, repository]

GABA&lt;sub&gt;A&lt;/sub&gt; receptor subunit composition regulates circadian rhythms in rest-wake and synchrony among cells in the suprachiasmatic nucleus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: herzog-lab/daniel-granadosf-et.-al.-2024 (CC0-1.0)

Status: code verified, 19 files readable, 2 matches

[25895] doi:10.1073/pnas.2407472121 [paper, data]

The ISR downstream target ATF4 represses long-term memory in a cell type-specific manner.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25896] doi:10.1098/rsob.240051 [paper, data]

Lack of Bmal1 leads to changes in rhythmicity and impairs motivation towards natural stimuli.

Journal: Open biology

Status: data only, 1 dataset cited

[25897] doi:10.1098/rspb.2024.0627 [paper, data]

&lt;i&gt;Optix&lt;/i&gt; and &lt;i&gt;cortex/ivory/mir-193&lt;/i&gt; again: the repeated use of two mimicry hotspot loci.

Journal: Proceedings. Biological sciences

Status: data only, 1 dataset cited

[25898] doi:10.1126/sciadv.adl4694 [paper, data]

Astrocytes control quiescent NSC reactivation via GPCR signaling-mediated F-actin remodeling.

Journal: Science advances

Status: data only, 1 dataset cited

[25899] doi:10.1162/imag_a_00239 [paper, repository]

Respiration recording for fMRI: breathing belt versus spine coil sensor.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF hr7v4 (no license)

Status: code verified, 1 file readable

[25900] doi:10.1162/imag_a_00243 [paper, data]

Systematic cross-species comparison of prefrontal cortex functional networks targeted via transcranial magnetic stimulation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[25901] doi:10.1186/s41747-024-00490-w [paper, repository]

Anisotropy component of DTI reveals long-term neuroinflammation following repetitive mild traumatic brain injury in rats.

Journal: European radiology experimental

Authors' code: fil.ion.ucl.ac.uk/spm/software (no license)

Status: code verified

[25902] doi:10.1371/journal.pgph.0003351 [paper, data]

Artificial Intelligence-based automated CT brain interpretation to accelerate treatment for acute stroke in rural India: An interrupted time series study.

Journal: PLOS global public health

Status: data only, 4 datasets cited

[25903] doi:10.1371/journal.pone.0303483 [paper, data]

Metagenomic sequencing of the skin microbiota of the scalp predicting the risk of surgical site infections following surgery of traumatic brain injury in sub-Saharan Africa.

Journal: PloS one

Status: data only, 2 datasets cited

[25904] doi:10.1523/jneurosci.2134-23.2024 [paper, repository]

Decoding Remapped Spatial Information in the Peri-Saccadic Period.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF uqpxy (no license)

Status: code verified, 19 files readable, 5 matches

[25905] doi:10.3389/fmed.2024.1405848 [paper, data]

A deep neural network-based approach for seizure activity recognition of epilepsy sufferers.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[25906] doi:10.3389/fncel.2024.1414955 [paper, data]

Genetic approaches to elucidating cortical and hippocampal GABAergic interneuron diversity.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[25907] doi:10.3389/fnins.2024.1401690 [paper, repository]

Paired competing neurons improving STDP supervised local learning in spiking neural networks.

Journal: Frontiers in neuroscience

Authors' code: gitlab.univ-lille.fr/fox/snn-pcn (CECILL-2.1)

Status: code verified, 168 files readable

[25908] doi:10.3390/diagnostics14151590 [paper, repository]

Automated Quantitative Image-Derived Input Function for the Estimation of Cerebral Blood Flow Using Oxygen-15-Labelled Water on a Long-Axial Field-of-View PET/CT Scanner.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: Rigshospitalet-KFNM/IDIF (MIT)

Status: code verified, 4 files readable, 1 match

[25909] doi:10.3390/jimaging10080179 [paper, data]

Deep Learning for Single-Shot Structured Light Profilometry: A Comprehensive Dataset and Performance Analysis.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[25910] doi:10.3758/s13414-024-02932-4 [paper]

The speed and phase of locomotion dictate saccade probability and simultaneous low-frequency power spectra.

Journal: Attention, perception & psychophysics

Status: code on request

[25911] doi:10.7554/elife.93158 [paper, repository]

Shared structure facilitates working memory of multiple sequences.

Journal: eLife

Authors' code: OSF pswxu (no license)

Status: code verified, 1 file readable

Tuesday, 23 July 2024 (29 papers)

[25912] doi:10.1002/alz.13908 [paper, repository]

Harmonizing tau positron emission tomography in Alzheimer's disease: The CenTauR scale and the joint propagation model.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: larslau/JPM (GPL-3.0)

Status: code verified, 4 files readable

[25913] doi:10.1002/alz.14132 [paper, repository]

Predicting continuous amyloid PET values with CSF tau phosphorylation occupancies.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable

[25914] doi:10.1007/s10334-024-01173-8 [paper, repository]

Deep learning for accelerated and robust MRI reconstruction.

Journal: Magma (New York, N.Y.)

Authors' code: paperswithcode.com (no license)

Status: code verified

[25915] doi:10.1016/j.bpsgos.2024.100367 [paper, repository]

Dynamic Functional Connectivity Correlates of Trait Mindfulness in Early Adolescence.

Journal: Biological psychiatry global open science

Authors' code: OSF 3gwt9 (no license)

Status: code verified, 6 files readable, 1 match

[25916] doi:10.1016/j.celrep.2024.114539 [paper, repository]

Physiological characteristics of neurons in the mammillary bodies align with topographical organization of subicular inputs.

Journal: Cell reports

Authors' code: buzsakilab/buzcode (GPL-3.0)

Status: code verified, 2,000 files readable, 19 matches

[25917] doi:10.1016/j.heliyon.2024.e34876 [paper, data]

Characterization of the tumor microenvironment in breast cancer brain metastasis.

Journal: Heliyon

Status: data only, 1 dataset cited

[25918] doi:10.1038/s41467-024-50565-w [paper, data]

Membrane remodeling by FAM92A1 during brain development regulates neuronal morphology, synaptic function, and cognition.

Journal: Nature communications

Status: data only, 2 datasets cited

[25919] doi:10.1038/s41598-024-67442-7 [paper, repository]

Target control of linear directed networks based on the path cover problem.

Journal: Scientific reports

Authors' code: wataru-s1/SimpleTarget (no license)

Status: code verified, 5 files readable

[25920] doi:10.1038/s41598-024-67855-4 [paper, data]

A scheme combining feature fusion and hybrid deep learning models for epileptic seizure detection and prediction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25921] doi:10.1038/s41598-024-67957-z [paper, repository]

Accelerating photoacoustic microscopy by reconstructing undersampled images using diffusion models.

Journal: Scientific reports

Authors' code: iremzog/diffpam (no license), axd465/PAM_Deep_Learning_Undersampling_Publication (GPL-3.0)

Status: code verified, 36 files readable, 7 matches

[25922] doi:10.1038/s42003-024-06531-9 [paper, data]

Mediodorsal thalamus and ventral pallidum contribute to subcortical regulation of the default mode network.

Journal: Communications biology

Status: data only, 1 dataset cited

[25923] doi:10.1073/pnas.2320372121 [paper, data]

The structure and mechanics of the cell cortex depend on the location and adhesion state.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25924] doi:10.1073/pnas.2322834121 [paper, data]

Resolving the 22q11.2 deletion using CTLR-Seq reveals chromosomal rearrangement mechanisms and individual variance in breakpoints.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25925] doi:10.1073/pnas.2400687121 [paper, repository]

Pink noise promotes sooner state transitions during bimanual coordination.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 24986436 (CC-BY-4.0)

Status: code verified, 2 files readable

[25926] doi:10.1073/pnas.2402755121 [paper, data]

Molecular mechanisms of proteoglycan-mediated semaphorin signaling in axon guidance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[25927] doi:10.1073/pnas.2403212121 [paper, repository]

Sex and mental health are related to subcortical brain microstructure.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ABCD-STUDY (no license), ABCD-STUDY/RSI (MIT)

Status: code verified, 4 files readable

[25928] doi:10.1073/pnas.2404676121 [paper, repository]

Stochastic machine learning via sigma profiles to build a digital chemical space.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: MaginnGroup/Sigmaussian (no license)

Status: code verified, 6 files readable

[25929] doi:10.1093/nc/niae031 [paper, data]

The influence of feature-based attention and response requirements on ERP correlates of auditory awareness.

Journal: Neuroscience of consciousness

Status: data only, 1 dataset cited

[25930] doi:10.1101/gr.278424.123 [paper, repository]

Single-cell discovery of m&lt;sup&gt;6&lt;/sup&gt;A RNA modifications in the hippocampus.

Journal: Genome research

Authors' code: KoziolLaboratory/sc-m6a-hippocampus (MIT)

Status: code verified, 20 files readable, 7 matches

[25931] doi:10.1159/000540491 [paper, repository]

Eye Size Does Not Change with Artificial Selection on Relative Telencephalon Size in Guppies (Poecilia reticulata).

Journal: Brain, behavior and evolution

Authors' code: figshare 25213355 (CC-BY-4.0)

Status: code verified, 2 files readable, 5 matches

[25932] doi:10.1186/s12951-024-02660-9 [paper, repository]

NANO.PTML model for read-across prediction of nanosystems in neurosciences. computational model and experimental case of study.

Journal: Journal of nanobiotechnology

Authors' code: she012/NANO.PTML-project (MIT)

Status: code verified, 3 files readable, 1 match

[25933] doi:10.1186/s13024-024-00740-w [paper, data]

Astrocytic autophagy plasticity modulates Aβ clearance and cognitive function in Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[25934] doi:10.1186/s13041-024-01115-4 [paper, repository]

The myelin water imaging transcriptome: myelin water fraction regionally varies with oligodendrocyte-specific gene expression.

Journal: Molecular brain

Authors' code: kramer-lab-repo/neuroimaging_transcriptomics (no license)

Status: code verified, 2 files readable, 2 matches

[25935] doi:10.1186/s13293-024-00632-0 [paper, data]

Adult sex change leads to extensive forebrain reorganization in clownfish.

Journal: Biology of sex differences

Status: data only, 6 datasets cited

[25936] doi:10.1371/journal.pbio.3002727 [paper, repository]

Selective suppression of oligodendrocyte-derived amyloid beta rescues neuronal dysfunction in Alzheimer's disease.

Journal: PLoS biology

Authors' code: petersaj/neuropixels_trajectory_explorer (GPL-3.0), Zenodo 12627166 (CC-BY-4.0)

Status: code verified, 81 files readable, 9 matches

[25937] doi:10.1523/eneuro.0484-23.2024 [paper, repository]

Practical Bayesian Inference in Neuroscience: Or How I Learned to Stop Worrying and Embrace the Distribution.

Journal: eNeuro

Authors' code: bscoventry/Practical-Bayesian-Inference-in-Neuroscience-Or-How-I-Learned-To-Stop-Worrying-and-Embrace-the-Dist (MIT), Zenodo 11206116 (CC-BY-4.0), bscoventry/BayesianNeuralAnalysis (MIT)

Status: code verified, 70 files readable, 18 matches

[25938] doi:10.3390/jcm13154281 [paper, data]

Quantitative Analysis of the Effect of Neuromuscular Blockade on Motor-Evoked Potentials in Patients Undergoing Brain Tumor Removal Surgery: A Prospective, Single-Arm, Open-Label Observational Study.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[25939] doi:10.3390/s24154763 [paper, data]

Design Decisions for Wearable EEG to Detect Motor Imagery Movements.

Journal: Sensors (Basel, Switzerland)

Status: data only, 3 datasets cited

[25940] doi:10.7554/elife.93804 [paper, repository]

Aberrant hippocampal Ca²⁺ microwaves following synapsin-dependent adeno-associated viral expression of Ca²⁺ indicators.

Journal: eLife

Authors' code: tonykelly00/Ca_waves_data-Elife (no license)

Status: code verified, 4 files readable

Monday, 22 July 2024 (29 papers)

[25941] doi:10.1002/dad2.12609 [paper, repository]

Lifestyle and psychosocial associations with cognition at the cusp of midlife using twins and siblings.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: OSF 8rwdq (no license), OSF tep53 (no license)

Status: code verified, 6 files readable, 1 match

[25942] doi:10.1007/s11357-024-01269-y [paper, data]

Cognitive rejuvenation in old rats by hippocampal OSKM gene therapy.

Journal: GeroScience

Status: data only, 1 dataset cited

[25943] doi:10.1016/j.isci.2024.110490 [paper]

Linking cortical surface area to computational properties in human visual perception.

Journal: iScience

Status: code on request

[25944] doi:10.1016/j.isci.2024.110545 [paper, repository]

Quantifying brain-functional dynamics using deep dynamical systems: Technical considerations.

Journal: iScience

Authors' code: DurstewitzLab/PLRNN_SSM (GPL-3.0), JanineT-oss/ALS_PLRNN_classification (GPL-3.0)

Status: code verified, 53 files readable

[25945] doi:10.1016/j.isci.2024.110548 [paper, data]

Preserved functional organization of auditory cortex in two individuals missing one temporal lobe from infancy.

Journal: iScience

Status: code on request, 1 dataset cited

[25946] doi:10.1038/s41417-024-00809-0 [paper, data]

Atypical cellular responses mediated by intracellular constitutive active TrkB (NTRK2) kinase domains and a solely intracellular NTRK2-fusion oncogene.

Journal: Cancer gene therapy

Status: data only, 1 dataset cited

[25947] doi:10.1038/s41467-024-50214-2 [paper, repository]

Gaze-centered gating, reactivation, and reevaluation of economic value in orbitofrontal cortex.

Journal: Nature communications

Authors' code: doi:10.12751/g-node.evlnq5 (no license)

Status: code verified

[25948] doi:10.1038/s41467-024-50414-w [paper, repository]

Interneuron diversity in the human dorsal striatum.

Journal: Nature communications

Authors' code: LieberInstitute/10xPilot_snRNAseq-human (Artistic-2.0), figshare 22340212 (CC-BY-4.0)

Status: code verified, 126 files readable, 6 matches

[25949] doi:10.1038/s41586-024-07744-y [paper, repository]

Neural general circulation models for weather and climate.

Journal: Nature

Authors' code: google-research/dinosaur (Apache-2.0), google-research/neuralgcm (Apache-2.0), google-research/weatherbench2 (Apache-2.0), Zenodo 11376145 (CC-BY-4.0), Zenodo 11376143 (CC-BY-4.0), Zenodo 11376271 (CC-BY-4.0)

Status: code verified, 353 files readable, 13 matches

[25950] doi:10.1038/s41586-024-07819-w [paper, repository]

Dopamine-mediated interactions between short- and long-term memory dynamics.

Journal: Nature

Authors' code: Zenodo 10998457 (CC-BY-4.0), schnitzer-lab/Luo_Huang_2024_MB_model (no license)

Status: code verified, 30 files readable, 1 match

[25951] doi:10.1038/s41591-024-03142-z [paper, repository]

Proteomic signatures improve risk prediction for common and rare diseases.

Journal: Nature medicine

Authors' code: comp-med/Sparse-proteomic-prediction-of-common-and-rare-diseases (no license), broadinstitute/inferCNV (other)

Status: code verified, 114 files readable, 12 matches

[25952] doi:10.1038/s41598-024-66697-4 [paper]

Network resonance and the auditory steady state response.

Journal: Scientific reports

Status: code on request

[25953] doi:10.1038/s41598-024-67902-0 [paper, data]

Resting-state electroencephalography (EEG) microstates of healthy individuals following mild sleep deprivation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25954] doi:10.1038/s44319-024-00190-x [paper, data]

Targeting monocytic Occludin impairs transendothelial migration and HIV neuroinvasion.

Journal: EMBO reports

Status: data only, 1 dataset cited

[25955] doi:10.1038/s44319-024-00213-7 [paper, data]

Fam134c and Fam134b shape axonal endoplasmic reticulum architecture in vivo.

Journal: EMBO reports

Status: data only, 1 dataset cited

[25956] doi:10.1083/jcb.202306152 [paper, repository]

Murine glial protrusion transcripts predict localized Drosophila glial mRNAs involved in plasticity.

Journal: The Journal of cell biology

Authors' code: jefflee1103/Gala2023_glia-localised-RNA (no license)

Status: code verified, 28 files readable, 18 matches

[25957] doi:10.1097/brs.0000000000005100 [paper, repository]

The Development of Spinal Endoscopic Ultrasonic Imaging System With an Automated Tissue Recognition Algorithm.

Journal: Spine

Authors' code: xiangyw99/Spinal-Endoscopic-Ultrasonic-Imaging-System-with-Automated-Tissue-Recognition-Algorithm (MIT)

Status: code verified, 8 files readable, 2 matches

[25958] doi:10.1162/imag_a_00237 [paper]

The neurochemistry of learning-driven sensory eye dominance plasticity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[25959] doi:10.1172/jci.insight.169647 [paper, data]

Preclinical spheroid models identify BMX as a therapeutic target for metastatic MYCN nonamplified neuroblastoma.

Journal: JCI insight

Status: data only, 2 datasets cited

[25960] doi:10.1242/dev.202693 [paper, data]

SoxB1 transcription factors are essential for initiating and maintaining neural plate border gene expression.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[25961] doi:10.1371/journal.pone.0306857 [paper, data]

Optimal image quality and radiation doses with optimal tube voltages/currents for pediatric anthropomorphic phantom brains.

Journal: PloS one

Status: data only, 1 dataset cited

[25962] doi:10.1523/eneuro.0065-24.2024 [paper, repository]

Gaze and Arrows: Does the Gaze-Following Patch in the Posterior Temporal Cortex Differentiate Social and Symbolic Spatial Cues?

Journal: eNeuro

Authors' code: maalaria/fmrius (no license)

Status: code verified, 24 files readable, 5 matches

[25963] doi:10.3389/fninf.2024.1376022 [paper, repository]

Neuroimaging article reexecution and reproduction assessment system.

Journal: Frontiers in neuroinformatics

Authors' code: gin.g-node.org/thechymera/opfvta-reexecution (Apache-2.0), con/opfvta-reexecution (Apache-2.0), figshare 7247339 (CC-BY-4.0), Zenodo 3234918 (CC-BY-4.0), Zenodo 3236930 (CC-BY-4.0), Zenodo 8214739 (MIT), Zenodo 2545838 (MIT), IBT-FMI/mouse-brain-atlases_generator (no license), IBT-FMI/SAMRI (GPL-3.0)

Status: code verified, 148 files readable

[25964] doi:10.3389/fvets.2024.1441021 [paper, repository]

RNA sequencing analysis of sexual dimorphism in Japanese quail.

Journal: Frontiers in veterinary science

Authors' code: ABCLabDB/JapaneseQuail_RNA_Seq (no license), ncbi/sra-tools (other)

Status: code verified, 1,658 files readable, 1 match

[25965] doi:10.7554/elife.87055 [paper, repository]

Firing rate adaptation affords place cell theta sweeps, phase precession, and procession.

Journal: eLife

Authors' code: supp:PMC11262797/elife-87055-code1.zip (no license)

Status: code verified, 19 files readable, 3 matches

[25966] doi:10.7554/elife.92033 [paper, repository]

Using synchronized brain rhythms to bias memory-guided decisions.

Journal: eLife

Authors' code: JohnStout/GriffinLabCode (no license)

Status: code verified, 2,000 files readable, 11 matches

[25967] doi:10.7554/elife.93983 [paper, repository]

Neural activity ramps in frontal cortex signal extended motivation during learning.

Journal: eLife

Authors' code: Zenodo 11451977 (CC-BY-4.0), RajasethupathyLabGitHub/RegaladoElifePaperCode (no license)

Status: code verified, 25 files readable, 1 match

[25968] doi:10.7554/elife.94509 [paper, repository]

Speech and music recruit frequency-specific distributed and overlapping cortical networks.

Journal: eLife

Authors' code: noemietr/iSpeech (MIT)

Status: code verified, 5 files readable, 6 matches

[25969] doi:10.7554/elife.97256 [paper, repository]

Energetic demands regulate sleep-wake rhythm circuit development.

Journal: eLife

Authors' code: supp:PMC11262794/elife-97256-code1.zip (no license)

Status: empty repository

Sunday, 21 July 2024 (2 papers)

[25970] doi:10.1016/j.ibneur.2024.07.006 [paper]

Two hub genes of bipolar disorder, a bioinformatics study based on the GEO database.

Journal: IBRO neuroscience reports

Status: data only

[25971] doi:10.1111/ene.16364 [paper]

Association between striatal amyloid deposition and motor prognosis in Parkinson's disease.

Journal: European journal of neurology

Status: code on request

Saturday, 20 July 2024 (14 papers, 13 on this page)

[25972] doi:10.1007/s12672-024-01126-6 [paper, data]

Angiogenesis related genes based prognostic model of glioma patients developed by multi-omics approach.

Journal: Discover oncology

Status: data only, 1 dataset cited

[25973] doi:10.1016/j.heliyon.2024.e34865 [paper, data]

Pharmacological mechanism of Shaoyao Gancao Decoction in the treatment of depression based on bioinformatics and animal experiment.

Journal: Heliyon

Status: data only, 1 dataset cited

[25974] doi:10.1016/j.isci.2024.110546 [paper, repository]

Purinergic exposure induces epigenomic and transcriptomic-mediated preconditioning resembling epilepsy-associated microglial states.

Journal: iScience

Authors' code: omorante/shinyepico (AGPL-3.0), chris-mcginnis-ucsf/DoubletFinder (no license), MangiolaLaboratory/sccomp (GPL-3.0), shenlab-sinai/GeneOverlap (no license)

Status: code verified, 113 files readable, 6 matches

[25975] doi:10.1016/j.isci.2024.110552 [paper]

Oleic acid released by sensory neurons inhibits TRPV1-mediated thermal hypersensitivity via GPR40.

Journal: iScience

Status: code on request

[25976] doi:10.1016/j.neuroimage.2024.120734 [paper, repository]

High-resolution diffusion magnetic resonance imaging and spatial-transcriptomic in developing mouse brain.

Journal: NeuroImage

Authors' code: selinahxy/developingmousebraindmri (no license)

Status: code verified, 3 files readable

[25977] doi:10.1038/s41467-024-50471-1 [paper, repository]

Tumor detection by analysis of both symmetric- and hemi-methylation of plasma cell-free DNA.

Journal: Nature communications

Authors' code: clouds-drift/plasma_MCD (no license)

Status: code verified, 3 files readable, 3 matches

[25978] doi:10.1038/s41467-024-50506-7 [paper, repository]

Temporal pattern recognition in retinal ganglion cells is mediated by dynamical inhibitory synapses.

Journal: Nature communications

Authors' code: gitlab.inria.fr/x-sebert/osr_model (no license)

Status: dead link

[25979] doi:10.1038/s41531-024-00748-5 [paper, data]

Adult-onset deletion of ATP13A2 in mice induces progressive nigrostriatal pathway dopaminergic degeneration and lysosomal abnormalities.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[25980] doi:10.1038/s41597-024-03636-y [paper, repository]

Cognitive tasks, anatomical MRI, and functional MRI data evaluating the construct of self-regulation.

Journal: Scientific data

Authors' code: OSF zk6w9 (no license), Zenodo 11211816 (CC-BY-4.0), sjshim/self_regulation_ontology_neuro (MIT)

Status: code verified, 16 files readable, 10 matches

[25981] doi:10.1038/s42003-024-06546-2 [paper, repository]

Modulation of large rhythmic depolarizations in human large basket cells by norepinephrine and acetylcholine.

Journal: Communications biology

Authors' code: jonasort/mea_analysis (no license)

Status: code verified, 20 files readable, 2 matches

[25982] doi:10.1038/s42003-024-06573-z [paper, repository]

Dissecting task-based fMRI activity using normative modelling: an application to the Emotional Face Matching Task.

Journal: Communications biology

Authors' code: predictive-clinical-neuroscience/EFMT_Norm_Models (GPL-3.0), Zenodo 12515866 (CC-BY-4.0)

Status: code verified, 66 files readable, 5 matches

[25983] doi:10.1111/cdev.14134 [paper]

Reading disability is characterized by reduced print-speech convergence.

Journal: Child development

Status: code on request

[25984] doi:10.21769/bioprotoc.5035 [paper, data]

Approach for Electrophysiological Studies of Spinal Lamina X Neurons.

Journal: Bio-protocol

Status: data only, 1 dataset cited

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