Every paper, by date: page 115

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 115 of 200: 5 August 2024 to 30 July 2024.

Monday, 5 August 2024 (35 papers, 31 on this page)

[25537] doi:10.1016/j.neuroimage.2024.120771 [paper, repository]

Explainable spatio-temporal graph evolution learning with applications to dynamic brain network analysis during development.

Journal: NeuroImage

Authors' code: ncbi.nlm.nih.gov/projects/gap (no license)

Status: code verified

[25538] doi:10.1016/j.redox.2024.103301 [paper, repository]

TDP-43 dysfunction leads to bioenergetic failure and lipid metabolic rewiring in human cells.

Journal: Redox biology

Authors' code: figshare 22137515 (CC-BY-4.0)

Status: code verified

[25539] doi:10.1016/j.resplu.2024.100738 [paper, data]

The effects of bolus compared to continuous administration of adrenaline on cerebral oxygenation during experimental cardiopulmonary resuscitation.

Journal: Resuscitation plus

Status: data only, 3 datasets cited

[25540] doi:10.1038/s41386-024-01944-w [paper, data]

Translation of monosynaptic circuits underlying amygdala fMRI neurofeedback training.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[25541] doi:10.1038/s41551-024-01242-2 [paper, repository]

Contributions of network structure, chemoarchitecture and diagnostic categories to transitions between cognitive topographies.

Journal: Nature biomedical engineering

Authors' code: neurosynth/neurosynth (MIT), dominance-analysis/dominance-analysis (MIT), gushiapi/Dynamic-Trajectory (no license), brainnetworkslab.com/coderesources (no license), frantisekvasa/rotate_parcellation (MIT), rlambiot/variance (no license), dsi-studio.labsolver.org (no license), netneurolab/luppi-neurosynth-control (BSD-3-Clause)

Status: code verified, 71 files readable, 11 matches

[25542] doi:10.1038/s41593-024-01728-x [paper, data]

An activity-regulated transcriptional program directly drives synaptogenesis.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[25543] doi:10.1038/s41593-024-01730-3 [paper, repository]

Oligodendrocytes produce amyloid-β and contribute to plaque formation alongside neurons in Alzheimer's disease model mice.

Journal: Nature neuroscience

Authors' code: TSun-tech/2023_Sasmita_OL_BACE (no license)

Status: code verified, 2 files readable, 1 match

[25544] doi:10.1038/s41597-024-03676-4 [paper, repository]

A Multimodal Dataset for Mixed Emotion Recognition.

Journal: Scientific data

Authors' code: ypthu/Multimodal-dataset-for-mixed-emotion-recognition (no license), ypthu/Multimodal-dataset-for-mixed-emotion-recognition-Data-collection (no license)

Status: code verified, 18 files readable, 8 matches

[25545] doi:10.1038/s41598-024-68071-w [paper, data]

Epigenetic associations with neonatal age in infants born very preterm, particularly among genes involved in neurodevelopment.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25546] doi:10.1038/s42003-024-06613-8 [paper, repository]

Critical dynamics in spontaneous EEG predict anesthetic-induced loss of consciousness and perturbational complexity.

Journal: Communications biology

Authors' code: jnobyrne/edgeofpy (Apache-2.0), BIAPT/Criticality_PCI_Anesthesia (no license)

Status: code verified, 18 files readable, 13 matches

[25547] doi:10.1038/s44318-024-00192-4 [paper]

PQBP3 prevents senescence by suppressing PSME3-mediated proteasomal Lamin B1 degradation.

Journal: The EMBO journal

Status: data only

[25548] doi:10.1038/s44321-024-00110-5 [paper]

Inhibition of GSK3α,β rescues cognitive phenotypes in a preclinical mouse model of CTNNB1 syndrome.

Journal: EMBO molecular medicine

Status: data only

[25549] doi:10.1073/pnas.2401032121 [paper, repository]

The neural basis of swap errors in working memory.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 12980898 (CC-BY-4.0), wj2/swap_errors (no license)

Status: code verified, 152 files readable, 4 matches

[25550] doi:10.1073/pnas.2401217121 [paper, data]

ZNF91 is an endogenous repressor of the molecular phenotype associated with X-linked dystonia-parkinsonism (XDP).

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[25551] doi:10.1073/pnas.2405636121 [paper, repository]

Naturally occurring horse model of miscarriage reveals temporal relationship between chromosomal aberration type and point of lethality.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: deMestre-lab/Pregnancy-Loss-Genetics (no license), Zenodo 12745505 (no license), Zenodo 12745506 (CC-BY-4.0)

Status: code verified, 6 files readable, 2 matches

[25552] doi:10.1088/1741-2552/ad6188 [paper, repository]

Detecting rhythmic spiking through the power spectra of point process model residuals.

Journal: Journal of neural engineering

Authors' code: kc13/residuals_spectral_analysis (GPL-3.0), Zenodo 13160664 (CC-BY-4.0), turner-lab-pitt/TouchTask_PD_study (GPL-3.0), Zenodo 11397910 (CC-BY-4.0)

Status: code verified, 150 files readable, 12 matches

[25553] doi:10.1088/1741-2552/ad647d [paper, repository]

A fully automatic multichannel neural spike sorting algorithm with spike reduction and positional feature.

Journal: Journal of neural engineering

Authors' code: Zeinab-Mohammadi/GEMsort (no license)

Status: code verified, 17 files readable

[25554] doi:10.1098/rsbl.2024.0336 [paper, repository]

The reduction in relative brain size in the domesticated dog is not an evolutionary singularity among the canids.

Journal: Biology letters

Authors' code: mpcmevolution/mpcmarchive (no license)

Status: code verified, 30 files readable, 1 match

[25555] doi:10.1162/imag_a_00248 [paper]

The effects of musicality on brain network topology in the context of Alzheimer's disease and memory decline.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[25556] doi:10.1186/s12984-024-01427-5 [paper, repository]

Clinical and neurophysiological effects of bilateral repetitive transcranial magnetic stimulation and EEG-guided neurofeedback in Parkinson's disease: a randomized, four-arm controlled trial.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: OSF 54gmk (no license)

Status: code verified, 4 files readable, 2 matches

[25557] doi:10.1186/s12984-024-01430-w [paper, data]

Brain modulation after exergaming training in advanced forms of Parkinson's disease: a randomized controlled study.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[25558] doi:10.1186/s12993-024-00245-y [paper, data]

Effects of caffeine intake on pupillary parameters in humans: a systematic review and meta-analysis.

Journal: Behavioral and brain functions : BBF

Status: data only, 1 dataset cited

[25559] doi:10.1371/journal.pcbi.1011431 [paper, repository]

Attentional selection and communication through coherence: Scope and limitations.

Journal: PLoS computational biology

Authors' code: lward77/CTC (GPL-3.0)

Status: code verified, 3 files readable, 3 matches

[25560] doi:10.1371/journal.pone.0308295 [paper, data]

Reexamining the Kuleshov effect: Behavioral and neural evidence from authentic film experiments.

Journal: PloS one

Status: data only, 1 dataset cited

[25561] doi:10.1590/acb395329 [paper, repository]

Neuroprotective effects of the combined treatment of resveratrol and urapidil in experimental cerebral ischemia-reperfusion injury in rats.

Journal: Acta cirurgica brasileira

Authors' code: Zenodo 12627561 (CC-BY-4.0)

Status: empty repository

[25562] doi:10.21769/bioprotoc.5044 [paper, repository]

Construction of ThermoMaze.

Journal: Bio-protocol

Authors' code: misivoroslakos/3d_printed_designs (MIT)

Status: empty repository, 2 files readable

[25563] doi:10.3389/fnhum.2024.1448584 [paper, repository]

Evaluating the real-world usability of BCI control systems with augmented reality: a user study protocol.

Journal: Frontiers in human neuroscience

Authors' code: frankaemika (no license)

Status: code verified

[25564] doi:10.3389/fnsys.2024.1417346 [paper, repository]

The neuroanatomical organization of the hypothalamus is driven by spatial and topological efficiency.

Journal: Frontiers in systems neuroscience

Authors' code: Zenodo 12803299 (CC-BY-4.0), hellothisisnathan/brain-efficiency (no license)

Status: code verified, 53 files readable, 3 matches

[25565] doi:10.3390/genes15081027 [paper]

Identification of Autophagy-Related Biomarkers and Diagnostic Model in Alzheimer's Disease.

Journal: Genes

Status: data only

[25566] doi:10.7554/elife.90565 [paper, repository]

Combining array tomography with electron tomography provides insights into leakiness of the blood-brain barrier in mouse cortex.

Journal: eLife

Authors' code: georgkislinger/gkislinger_elife_atum-tomo (no license)

Status: empty repository, 1 file readable

[25567] doi:10.7554/elife.95680 [paper, data]

Disparity in temporal and spatial relationships between resting-state electrophysiological and fMRI signals.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 4 August 2024 (1 paper)

[25568] doi:10.1038/s41467-024-50941-6 [paper, repository]

Convergent direct and indirect cortical streams shape avoidance decisions in mice via the midline thalamus.

Journal: Nature communications

Authors' code: Penzolab/Data-analysis-of-Two-way-active-avoidance-task (no license), Zenodo 12707790 (CC-BY-4.0), laxace33/penzo-lab-files-for-ma-omalley-et-al-2024 (no license)

Status: code verified, 41 files readable, 2 matches

Saturday, 3 August 2024 (9 papers)

[25569] doi:10.1007/s10886-024-01533-7 [paper, data]

Electrophysiological Responses of Trissolcus japonicus, T. basalis, and T. oenone (Hymenoptera: Scelionidae) to Volatile Compounds Associated with New Zealand Stink Bugs (Hemiptera: Pentatomidae).

Journal: Journal of chemical ecology

Status: data only, 1 dataset cited

[25570] doi:10.1016/j.dcn.2024.101427 [paper, data]

Trauma's distinctive and combined effects on subsequent substance use, mental health, and neurocognitive functioning with the NCANDA sample.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[25571] doi:10.1016/j.isci.2024.110654 [paper, data]

Serum lipidome associates with neuroimaging features in patients with traumatic brain injury.

Journal: iScience

Status: code on request, 1 dataset cited

[25572] doi:10.1016/j.isci.2024.110667 [paper]

High-dimensional encoding of movement by single neurons in basal ganglia output.

Journal: iScience

Status: code on request

[25573] doi:10.1038/s41398-024-03040-5 [paper, data]

Nicotine reduces discrimination between threat and safety in the hippocampus, nucleus accumbens and amygdala.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[25574] doi:10.1038/s41419-024-06957-3 [paper, data]

Heterozygous knockout of Synaptotagmin13 phenocopies ALS features and TP53 activation in human motor neurons.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[25575] doi:10.1038/s41598-024-68467-8 [paper, repository]

Passively sensing smartphone use in teens with rates of use by sex and across operating systems.

Journal: Scientific reports

Authors' code: tinyurl.com/3hutza88 (no license)

Status: code verified

[25576] doi:10.1038/s42003-024-06642-3 [paper, data]

Dynamic mechanisms that couple the brain and breathing to the external environment.

Journal: Communications biology

Status: code on request, 1 dataset cited

[25577] doi:10.3390/cimb46080502 [paper, repository]

Transgenic <i>Drosophila melanogaster</i> Carrying a Human Full-Length DISC1 Construct (UAS-<i>hflDISC1</i>) Showing Effects on Social Interaction Networks.

Journal: Current issues in molecular biology

Authors' code: kristinbranson/FlyTracker (BSD-3-Clause)

Status: code verified, 205 files readable, 1 match

Friday, 2 August 2024 (35 papers)

[25578] doi:10.1007/s00701-024-06209-5 [paper]

Analysis of phase shift between pulse oscillations of macro- and microvascular cerebral blood flow in patients with traumatic brain injury.

Journal: Acta neurochirurgica

Status: code on request

[25579] doi:10.1007/s42113-024-00210-y [paper, repository]

Mnemonic vs. Executive Contributions to the N400: A Connectionist Approach to False Memories.

Journal: Computational brain & behavior

Authors' code: OSF fnyzg (no license)

Status: code verified, 30 files readable, 3 matches

[25580] doi:10.1016/j.isci.2024.110629 [paper]

Early hippocampal hyperexcitability and synaptic reorganization in mouse models of amyloidosis.

Journal: iScience

Status: code on request

[25581] doi:10.1038/s41467-024-48682-7 [paper, repository]

Wireless ear EEG to monitor drowsiness.

Journal: Nature communications

Authors' code: MullerGroup/EarEEG_Drowsiness (no license)

Status: dead link

[25582] doi:10.1038/s41467-024-50486-8 [paper, repository]

Long-read transcript sequencing identifies differential isoform expression in the entorhinal cortex in a transgenic model of tau pathology.

Journal: Nature communications

Authors' code: SziKayLeung/rTg4510 (no license), SziKayLeung/FICLE (BSD-3-Clause), Zenodo 12191598 (CC-BY-4.0)

Status: code verified, 295 files readable, 28 matches

[25583] doi:10.1038/s41467-024-50877-x [paper, data]

Huntington's disease cellular phenotypes are rescued non-cell autonomously by healthy cells in mosaic telencephalic organoids.

Journal: Nature communications

Status: data only, 1 dataset cited

[25584] doi:10.1038/s41591-024-03150-z [paper, repository]

A brain cell atlas integrating single-cell transcriptomes across human brain regions.

Journal: Nature medicine

Authors' code: rnacentre/scAnnot (Apache-2.0), linnarsson-lab/developing-human-brain (BSD-2-Clause), rnacentre/BrainCellAtlas-reproducibility (no license)

Status: code verified, 32 files readable, 23 matches

[25585] doi:10.1038/s41597-024-03629-x [paper, repository]

The Human Connectome Project of adolescent anxiety and depression dataset.

Journal: Scientific data

Authors' code: Zenodo 10849500 (CC-BY-4.0), Zenodo 10851055 (CC-BY-4.0), banda-connect/banda-resources (no license), banda-connect/fmri-tasks (no license)

Status: code verified, 42 files readable, 4 matches

[25586] doi:10.1038/s41597-024-03667-5 [paper, repository]

The stroke outcome optimization project: Acute ischemic strokes from a comprehensive stroke center.

Journal: Scientific data

Authors' code: neurolabusc/StrokeOutcomeOptimizationProjectDemo (BSD-2-Clause), neurolabusc/mydeface (BSD-2-Clause), OSF yqktj (no license)

Status: code verified, 19 files readable, 2 matches

[25587] doi:10.1038/s41598-024-67976-w [paper, data]

CREB-regulated transcription during glycogen synthesis in astrocytes.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25588] doi:10.1038/s41598-024-68380-0 [paper, repository]

Discrimination of semantically similar verbal memory traces is affected in healthy aging.

Journal: Scientific reports

Authors' code: OSF uhmvw (no license), OSF 62d5p (no license)

Status: code verified, 1 file readable

[25589] doi:10.1038/s41598-024-68390-y [paper, repository]

Endocranial shape variation and allometry in Euarchontoglires.

Journal: Scientific reports

Authors' code: datadryad.org/stash/share/pphcc6syc5s9jrzu_cwo5w_vpbpvdrufbeinq3gamfi (no license)

Status: code verified

[25590] doi:10.1038/s41598-024-68945-z [paper, data]

Identification and validation of miRNA-target genes network in pediatric brain tumors.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25591] doi:10.1038/s41598-024-68978-4 [paper, repository]

GRU-powered sleep stage classification with permutation-based EEG channel selection.

Journal: Scientific reports

Authors' code: wavesresearch/sleep-staging_IIIS (MIT)

Status: code verified, 5 files readable

[25592] doi:10.1038/s41598-024-69029-8 [paper, repository]

Identifying diseases symptoms and general rules using supervised and unsupervised machine learning.

Journal: Scientific reports

Authors' code: fsogandi/disease-symptoms (no license)

Status: empty repository

[25593] doi:10.1038/s44324-024-00019-0 [paper, repository]

Peripheral insulin resistance attenuates cerebral glucose metabolism and impairs working memory in healthy adults.

Journal: npj metabolic health and disease

Authors' code: StuartJO/plotSurfaceROIBoundary (GPL-3.0)

Status: code verified, 12 files readable

[25594] doi:10.1093/braincomms/fcae259 [paper, repository]

Freezing of gait in Parkinson's disease is related to imbalanced stopping-related cortical activity.

Journal: Brain communications

Authors' code: helenacockx/freezing_stopping_fNIRS (GPL-3.0)

Status: code verified, 37 files readable, 8 matches

[25595] doi:10.1126/sciadv.adk4331 [paper, repository]

Axo-axonic synaptic input drives homeostatic plasticity by tuning the axon initial segment structurally and functionally.

Journal: Science advances

Authors' code: Zenodo 11513847 (CC-BY-4.0)

Status: code verified, 8 files readable, 1 match

[25596] doi:10.1126/sciadv.adn9815 [paper, data]

Dentate gyrus ensembles gate context-dependent neural states and memory retrieval.

Journal: Science advances

Status: data only, 1 dataset cited

[25597] doi:10.1162/imag_a_00246 [paper, repository]

A Set of FMRI Quality Control Tools in AFNI: Systematic, in-depth, and interactive QC with afni_proc.py and more.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 8320937 (other-open), niivue/niivue (BSD-2-Clause)

Status: code verified, 315 files readable

[25598] doi:10.1162/imag_a_00247 [paper, repository]

Uncovering patterns of white matter degeneration in normal aging: Links between morphometry and microstructure.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: nda.nih.gov/general-query.html (no license)

Status: code found, still to be checked

[25599] doi:10.1177/07487304241265439 [paper, repository]

Transcriptomic Plasticity of the Circadian Clock in Response to Photoperiod: A Study in Male Melatonin-Competent Mice.

Journal: Journal of biological rhythms

Authors' code: giannoma/OHC_RNAseq (no license)

Status: code verified, 21 files readable, 8 matches

[25600] doi:10.1186/s12864-024-10672-w [paper, repository]

Spatial transcriptome reveals the region-specific genes and pathways regulated by Satb2 in neocortical development.

Journal: BMC genomics

Authors' code: STOmics/SAW (GPL-3.0), liyu-ynu/satb2 (no license)

Status: code verified, 11 files readable, 2 matches

[25601] doi:10.1186/s12889-024-19306-y [paper, repository]

Short, frequent physical activity breaks improve working memory while preserving cerebral blood flow in adolescents during prolonged sitting - AbbaH teen, a randomized crossover trial.

Journal: BMC public health

Authors' code: huppertt/nirs-toolbox (no license)

Status: code verified, 2,000 files readable, 4 matches

[25602] doi:10.1186/s12920-024-01972-x [paper, data]

Analysis of different expression RNA binding protein genes in mouse microglia cell from the brains of mice 72 h after subarachnoid hemorrhage or sham operation.

Journal: BMC medical genomics

Status: data only, 1 dataset cited

[25603] doi:10.1186/s12974-024-03176-7 [paper, data]

Toxoplasma infection induces an aged neutrophil population in the CNS that is associated with neuronal protection.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[25604] doi:10.1186/s13073-024-01368-7 [paper, data]

Microglial heterogeneity in the ischemic stroke mouse brain of both sexes.

Journal: Genome medicine

Status: data only, 1 dataset cited

[25605] doi:10.1371/journal.pcbi.1012288 [paper, repository]

A general model unifying the adaptive, transient and sustained properties of ON and OFF auditory neural responses.

Journal: PLoS computational biology

Authors' code: urancon/deepSTRF (GPL-3.0), supp:PMC11324186/pcbi.1012288.s002.py (no license)

Status: code verified, 142 files readable, 27 matches

[25606] doi:10.1371/journal.pcbi.1012297 [paper, repository]

Decoding dynamic visual scenes across the brain hierarchy.

Journal: PLoS computational biology

Authors' code: beizai/Decoding (GPL-3.0)

Status: code verified, 9 files readable, 7 matches

[25607] doi:10.2147/ndt.s454370 [paper, data]

Abnormal Serum BDNF and p-mTOR in MDD in Adolescents with Childhood Trauma.

Journal: Neuropsychiatric disease and treatment

Status: data only, 1 dataset cited

[25608] doi:10.3389/fcell.2024.1396836 [paper, data]

Advancing precision medicine in gliomas through single-cell sequencing: unveiling the complex tumor microenvironment.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[25609] doi:10.3389/fnagi.2024.1423725 [paper, repository]

Senescence-related genes and proteins in the development of Alzheimer's disease: evidence from transcriptomic and Mendelian randomization analysis.

Journal: Frontiers in aging neuroscience

Authors' code: mrcieu.github.io/twosamplemr (no license)

Status: code verified

[25610] doi:10.3389/fnsys.2024.1425491 [paper, repository]

Variation in the distribution of large-scale spatiotemporal patterns of activity across brain states.

Journal: Frontiers in systems neuroscience

Authors' code: tsb46/complex_pca (MIT)

Status: code verified, 5 files readable, 1 match

[25611] doi:10.3389/frcha.2024.1410804 [paper, repository]

Understanding psychotic-like experiences in children in the context of dimensions of psychological problems.

Journal: Frontiers in child and adolescent psychiatry

Authors' code: VU-BRAINS-lab/ABCD-PLE (no license)

Status: empty repository

[25612] doi:10.3390/jcm13154538 [paper, repository]

Changing Knowledge, Principles, and Technology in Contemporary Clinical Audiological Practice: A Narrative Review.

Journal: Journal of clinical medicine

Authors' code: figshare 26377864 (CC-BY-4.0)

Status: empty repository

Thursday, 1 August 2024 (91 papers)

[25613] doi:10.1001/jamanetworkopen.2024.30711 [paper, repository]

Latent Profiles of Childhood Adversity, Adolescent Mental Health, and Neural Network Connectivity.

Journal: JAMA network open

Authors' code: Zenodo 2692522 (other-open), lgoetschius/gimme_preprocessing (MIT)

Status: code verified, 44 files readable

[25614] doi:10.1002/alz.13921 [paper, data]

Primate cerebrospinal fluid CHI3L1 reflects brain TREM2 agonism.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[25615] doi:10.1002/brb3.3643 [paper, data]

Characterizing white matter connectome abnormalities in patients with temporal lobe epilepsy using threshold-free network-based statistics.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[25616] doi:10.1002/hbm.26708 [paper, repository]

DeepComBat: A statistically motivated, hyperparameter-robust, deep learning approach to harmonization of neuroimaging data.

Journal: Human brain mapping

Authors' code: hufengling/DeepComBat (other), hufengling/deepcombat_analyses (MIT), ntustison/CrossLong (no license)

Status: code verified, 108 files readable, 8 matches

[25617] doi:10.1002/hbm.26727 [paper, data]

The metacontrol of event segmentation-A neurophysiological and behavioral perspective.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[25618] doi:10.1002/hbm.26754 [paper, repository]

Large-scale analysis of structural brain asymmetries during neurodevelopment: Associations with age and sex in 4265 children and adolescents.

Journal: Human brain mapping

Authors' code: mathworks.com/products/matlab (no license)

Status: code verified

[25619] doi:10.1002/hbm.26762 [paper, repository]

Sensitivity and specificity of the action observation network to kinematics, target object, and gesture meaning.

Journal: Human brain mapping

Authors' code: OSF 7ew46 (no license)

Status: code verified, 119 files readable, 3 matches

[25620] doi:10.1002/hbm.26788 [paper, repository]

Neural correlates of static and dynamic social decision-making in real-time sibling interactions.

Journal: Human brain mapping

Authors' code: OSF zhwmu (no license)

Status: code verified, 11 files readable, 10 matches

[25621] doi:10.1002/hbm.26793 [paper]

Electrophysiological correlation of auditory selective spatial attention in the "cocktail party" situation.

Journal: Human brain mapping

Status: code on request

[25622] doi:10.1002/hbm.26795 [paper, repository]

Compressed representation of brain genetic transcription.

Journal: Human brain mapping

Authors' code: jamesruffle/compressed-transcriptomics (Apache-2.0)

Status: code verified, 3 files readable, 1 match

[25623] doi:10.1002/hbm.26797 [paper, repository]

Multisensory integration of speech and gestures in a naturalistic paradigm.

Journal: Human brain mapping

Authors' code: OSF 2b6s3 (no license)

Status: code verified, 4 files readable, 11 matches

[25624] doi:10.1002/hbm.26800 [paper]

Sub-bundle based analysis reveals the role of human optic radiation in visual working memory.

Journal: Human brain mapping

Status: code on request

[25625] doi:10.1002/hbm.26802 [paper, repository]

Inter- and intra-subject similarity in network functional connectivity across a full narrative movie.

Journal: Human brain mapping

Authors' code: OSF tzpdf (no license)

Status: code verified, 36 files readable

[25626] doi:10.1002/hbm.26803 [paper, repository]

Segmentation of stroke lesions using transformers-augmented MRI analysis.

Journal: Human brain mapping

Authors' code: IDEA-Research/MaskDINO (Apache-2.0)

Status: code verified, 65 files readable, 14 matches

[25627] doi:10.1002/hbm.26804 [paper, data]

Brain activations elicited during task-switching generalize beyond the task: A partial least squares correlation approach to combine fMRI signals and cognition.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[25628] doi:10.1002/hbm.26807 [paper, repository]

Brain mechanisms discriminating enactive mental simulations of running and plogging.

Journal: Human brain mapping

Authors' code: OSF mvw68 (no license)

Status: code verified, 4 files readable

[25629] doi:10.1002/hbm.26808 [paper, data]

The computational and neural substrates of individual differences in impulsivity under loss framework.

Journal: Human brain mapping

Status: code on request, 1 dataset cited

[25630] doi:10.1002/hbm.26809 [paper, data]

Complexity organization of resting-state functional-MRI networks.

Journal: Human brain mapping

Status: code on request, 2 datasets cited

[25631] doi:10.1002/hbm.26816 [paper, repository]

Pooled analysis of multiple sclerosis findings on multisite 7 Tesla MRI: Protocol and initial observations.

Journal: Human brain mapping

Authors' code: s-j-choi/pooled-7t-data-processing (no license), JosePMarques/MP2RAGE-relatedscripts (no license), xuli99/JHUKKI_QSM_Toolbox (BSD-2-Clause)

Status: code verified, 196 files readable, 10 matches

[25632] doi:10.1002/hbm.26817 [paper, data]

Comprehensive investigation of predictive processing: A cross- and within-cognitive domains fMRI meta-analytic approach.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[25633] doi:10.1002/hbm.70003 [paper, repository]

Measuring and reducing the carbon footprint of fMRI preprocessing in fMRIPrep.

Journal: Human brain mapping

Authors' code: GreenScheduler/cats (MIT), NickESouter/fMRIPrep-Carbon-Footprint (MIT)

Status: code verified, 67 files readable, 8 matches

[25634] doi:10.1002/hbm.70008 [paper, repository]

Deep multimodal saliency parcellation of cerebellar pathways: Linking microstructure and individual function through explainable multitask learning.

Journal: Human brain mapping

Authors' code: SlicerDMRI/DeepMSP (other)

Status: code verified, 10 files readable, 6 matches

[25635] doi:10.1002/iid3.70000 [paper, data]

Identification and analysis of oxidative stress-related genes in hypoxic-ischemic brain damage using bioinformatics and experimental verification.

Journal: Immunity, inflammation and disease

Status: data only, 1 dataset cited

[25636] doi:10.1007/s00216-024-05422-6 [paper, data]

Mapping small metabolite changes after traumatic brain injury using AP-MALDI MSI.

Journal: Analytical and bioanalytical chemistry

Status: data only, 2 datasets cited

[25637] doi:10.1007/s00415-024-12591-y [paper, data]

Explaining recovery from coma with multimodal neuroimaging.

Journal: Journal of neurology

Status: data only, 2 datasets cited

[25638] doi:10.1007/s00701-024-06179-8 [paper]

Challenges with segmenting intraoperative ultrasound for brain tumours.

Journal: Acta neurochirurgica

Status: code on request

[25639] doi:10.1007/s11010-024-05064-3 [paper, data]

Single-cell atlas profiling revealed cellular characteristics and dynamic changes after PD-1 blockade therapy of brain metastases from laryngeal squamous cell carcinoma.

Journal: Molecular and cellular biochemistry

Status: data only, 2 datasets cited

[25640] doi:10.1016/j.bspc.2024.106235 [paper, repository]

Assessing time series correlation significance: A parametric approach with application to physiological signals.

Journal: Biomedical signal processing and control

Authors' code: johmedr/corrts (MIT)

Status: code verified, 6 files readable

[25641] doi:10.1016/j.patter.2024.101031 [paper, repository]

A federated learning architecture for secure and private neuroimaging analysis.

Journal: Patterns (New York, N.Y.)

Authors' code: bioint/MetisFL (BSD-3-Clause), Zenodo 11411754 (no license)

Status: code verified, 97 files readable, 3 matches

[25642] doi:10.1016/j.xpro.2024.103230 [paper, data]

Protocol for measuring the effects of an inhibitory signal associated with danger on honey bee dopamine levels.

Journal: STAR protocols

Status: data only, 1 dataset cited

[25643] doi:10.1038/s41467-024-50501-y [paper, repository]

Flexible gating between subspaces in a neural network model of internally guided task switching.

Journal: Nature communications

Authors' code: liuyuue/BioRNN_WCST (Apache), Zenodo 10183167 (CC-BY-4.0)

Status: code verified, 21 files readable, 7 matches

[25644] doi:10.1038/s41467-024-50503-w [paper, repository]

Neural representational geometries reflect behavioral differences in monkeys and recurrent neural networks.

Journal: Nature communications

Authors' code: ValeriaFascianelli/geometry-individual-differences (MIT)

Status: code verified, 7 files readable, 1 match

[25645] doi:10.1038/s41467-024-50548-x [paper, data]

Structural basis of positive allosteric modulation of metabotropic glutamate receptor activation and internalization.

Journal: Nature communications

Status: data only, 6 datasets cited

[25646] doi:10.1038/s41467-024-50658-6 [paper, repository]

Developmental Cajal-Retzius cell death contributes to the maturation of layer 1 cortical inhibition and somatosensory processing.

Journal: Nature communications

Authors' code: skollmor/dspace (AGPL-3.0)

Status: code verified, 197 files readable

[25647] doi:10.1038/s41467-024-50818-8 [paper, data]

Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis.

Journal: Nature communications

Status: data only, 2 datasets cited

[25648] doi:10.1038/s41531-024-00757-4 [paper, repository]

Nigral ATP13A2 depletion induces Parkinson's disease-related neurodegeneration in a pilot study in non-human primates.

Journal: NPJ Parkinson's disease

Authors' code: Soria (no license)

Status: dead link

[25649] doi:10.1038/s41598-024-68649-4 [paper, data]

Cell type- and layer-specific plasticity of olfactory bulb interneurons following olfactory sensory neuron ablation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25650] doi:10.1038/s42003-024-06630-7 [paper, repository]

Macroscale brain states support the control of semantic cognition.

Journal: Communications biology

Authors' code: Xiuyi-Wang/Project_Semantic_Brain_States (no license)

Status: code verified, 47 files readable, 4 matches

[25651] doi:10.1038/s43856-024-00576-x [paper, repository]

Exposure to multiple ambient air pollutants changes white matter microstructure during early adolescence with sex-specific differences.

Journal: Communications medicine

Authors' code: figshare 25928728 (CC-BY-4.0)

Status: code verified, 5 files readable

[25652] doi:10.1073/pnas.2402206121 [paper, data]

Loss of primary cilia and dopaminergic neuroprotection in pathogenic LRRK2-driven and idiopathic Parkinson's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[25653] doi:10.1093/brain/awae176 [paper, repository]

Towards cascading genetic risk in Alzheimer's disease.

Journal: Brain : a journal of neurology

Authors' code: andrealtmann/cascading_genetic_risk (GPL-3.0)

Status: code verified, 8 files readable, 2 matches

[25654] doi:10.1093/cercor/bhae312 [paper, data]

Volume electron microscopy analysis of synapses in primary regions of the human cerebral cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 2 datasets cited

[25655] doi:10.1093/cercor/bhae320 [paper, repository]

Spatiotemporal whole-brain activity and functional connectivity of melodies recognition.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0), leonardob92/MelodiesRecognition_LB2017_BroadbandActivity_StaticFunctionalConnectivity (no license)

Status: code verified, 170 files readable, 20 matches

[25656] doi:10.1093/cercor/bhae339 [paper, repository]

Both mOTS-words and pOTS-words prefer emoji stimuli over text stimuli during a lexical judgment task.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: vistalab/vistasoft (no license), EduNeuroLab/read_emojis_ots (no license)

Status: code verified, 2,030 files readable, 7 matches

[25657] doi:10.1093/cercor/bhae343 [paper, repository]

Intracortical myelin across laminae in adult individuals with 47,XXX: a 7 Tesla MRI study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: srikash/presurfer (no license), JosePMarques/MP2RAGE-related-scripts (GPL-3.0)

Status: code verified, 45 files readable, 6 matches

[25658] doi:10.1093/cercor/bhae350 [paper, repository]

Individual differences in spatial working memory strategies differentially reflected in the engagement of control and default brain networks.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF k8mvb (no license)

Status: code verified, 12 files readable, 6 matches

[25659] doi:10.1093/database/baae066 [paper, repository]

Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks.

Journal: Database : the journal of biological databases and curation

Authors' code: SCAI-BIO/mirna-disease-association-detection (Apache-2.0)

Status: code verified, 19 files readable, 5 matches

[25660] doi:10.1093/g3journal/jkae110 [paper, repository]

Widespread changes in gene expression accompany body size evolution in nematodes.

Journal: G3 (Bethesda, Md.)

Authors' code: gcwoodruff/inopinata_developmental_transcriptomics_2023 (no license)

Status: code verified, 23 files readable, 11 matches

[25661] doi:10.1093/g3journal/jkae111 [paper, repository]

Neurexin drives Caenorhabditis elegans avoidance behavior independently of its post-synaptic binding partner neuroligin.

Journal: G3 (Bethesda, Md.)

Authors' code: shreklab/MuirheadetAl2024_G3 (no license)

Status: code verified, 10 files readable

[25662] doi:10.1093/hmg/ddae087 [paper, repository]

Single nuclei RNA-seq reveals a medium spiny neuron glutamate excitotoxicity signature prior to the onset of neuronal death in an ovine Huntington's disease model.

Journal: Human molecular genetics

Authors' code: Zenodo 8057929 (CC-BY-4.0)

Status: code verified

[25663] doi:10.1093/nar/gkae520 [paper, data]

TRMT10A dysfunction perturbs codon translation of initiator methionine and glutamine and impairs brain functions in mice.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[25664] doi:10.1093/scan/nsae049 [paper, repository]

Heroes and villains: opposing narrative roles engage neural synchronization in the inferior frontal gyrus.

Journal: Social cognitive and affective neuroscience

Authors' code: Zenodo 12783652 (CC-BY-4.0), humaffectneurolab/isc_narrativeroles (no license)

Status: code verified, 6 files readable

[25665] doi:10.1093/scan/nsae052 [paper, repository]

Loneliness and brain rhythmic activity in resting state: an exploratory report.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF xt3pk (no license)

Status: code verified, 3 files readable, 1 match

[25666] doi:10.1093/schbul/sbae083 [paper, repository]

Genetic Implication of Prenatal GABAergic and Cholinergic Neuron Development in Susceptibility to Schizophrenia.

Journal: Schizophrenia bulletin

Authors' code: Dazcam/cameron_schizophr_bull_2023_snRNAseq (other), Dazcam/cameron_schizophr_bull_2023_snATACseq (other)

Status: code verified, 29 files readable, 13 matches

[25667] doi:10.1096/fba.2024-00070 [paper, data]

Insights on pathophysiology of hydrocephalus rats induced by kaolin injection.

Journal: FASEB bioAdvances

Status: data only, 1 dataset cited

[25668] doi:10.1096/fj.202400341r [paper, data]

Translatome analysis in acute ischemic stroke: Astrocytes and microglia exhibit differences in poststroke alternative splicing of expressed transcripts.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[25669] doi:10.1111/cns.14836 [paper, data]

Deciphering the neuroprotective mechanisms of RACK1 in cerebral ischemia-reperfusion injury: Pioneering insights into mitochondrial autophagy and the PINK1/Parkin axis.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[25670] doi:10.1111/cns.14901 [paper, repository]

Transcriptional expression patterns of the cortical morphometric similarity network in progressive supranuclear palsy.

Journal: CNS neuroscience & therapeutics

Authors' code: netneurolab/abagen (BSD-3-Clause), SarahMorgan/Morphometric_Similarity_SZ (MIT), rmarkello/abagen (BSD-3-Clause), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 119 files readable, 2 matches

[25671] doi:10.1111/cns.14902 [paper, data]

Role of the circRNA_34414/miR-6960a-5p/SIRT3 axis in postoperative delirium via CA1 Vglut1+ neurons in older mice.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[25672] doi:10.1111/cns.14904 [paper]

Abnormal large-scale brain functional network dynamics in social anxiety disorder.

Journal: CNS neuroscience & therapeutics

Status: code on request

[25673] doi:10.1111/cns.14906 [paper, repository]

Unraveling multi-scale neuroimaging biomarkers and molecular foundations for schizophrenia: A combined multivariate pattern analysis and transcriptome-neuroimaging association study.

Journal: CNS neuroscience & therapeutics

Authors' code: BMHLab/AHBAprocessing (no license)

Status: code verified, 386 files readable, 4 matches

[25674] doi:10.1111/cns.14916 [paper, data]

Brain border-derived CXCL2&lt;sup&gt;+&lt;/sup&gt; neutrophils drive NET formation and impair vascular reperfusion following ischemic stroke.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[25675] doi:10.1111/ene.16424 [paper]

Analysis of individual alpha frequency in a large cohort from a tertiary memory center.

Journal: European journal of neurology

Status: code on request

[25676] doi:10.1111/gbb.12908 [paper, repository]

RNA-sequencing reveals a shared neurotranscriptomic profile in the medial preoptic area of highly social songbirds and rats.

Journal: Genes, brain, and behavior

Authors' code: bjpolzin/playfulsong (MIT)

Status: code verified, 3 files readable, 5 matches

[25677] doi:10.1111/jcmm.70037 [paper, data]

A comprehensive prognostic and immune infiltration analysis of UBA1 in pan-cancer: A computational analysis and in vitro experiments.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[25678] doi:10.1111/psyp.14660 [paper, repository]

Nothing to lose? Neural correlates of decision, anticipation, and feedback in the balloon analog risk task.

Journal: Psychophysiology

Authors' code: OSF pkbt6 (no license)

Status: code verified, 1 file readable

[25679] doi:10.1162/imag_a_00249 [paper, repository]

Improving laminar fMRI specificity by reducing macrovascular bias revealed by respiration effects.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: yuhuichai/respiration_layer_fMRI (no license), freesurfer.net (no license), afni.nimh.nih.gov (no license), fil.ion.ucl.ac.uk/spm (no license), layerfMRI/LAYNII (BSD-3-Clause)

Status: code verified, 130 files readable, 3 matches

[25680] doi:10.1162/imag_a_00250 [paper, repository]

Cueing memory reactivation during NREM sleep engenders long-term plasticity in both brain and behaviour.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mnavarretem/psgScore (GPL-3.0), OSF y43sb (no license)

Status: code verified, 57 files readable, 10 matches

[25681] doi:10.1162/imag_a_00251 [paper, repository]

Translating phenotypic prediction models from big to small anatomical MRI data using meta-matching.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: thomasyeolab/cbig (MIT), thomasyeolab/meta_matching_models (MIT)

Status: code verified, 2,012 files readable, 3 matches

[25682] doi:10.1162/imag_a_00252 [paper, repository]

The trouble with free-water elimination using single-shell diffusion MRI data: A case study in ageing.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: RafaelNH/fweDTI_SSvsMS (no license), mmc43/fweDTI_SSvsMS (no license)

Status: code verified, 6 files readable, 8 matches

[25683] doi:10.1162/imag_a_00253 [paper, repository]

Integrating anatomical and functional landmarks for interparticipant alignment of imaging data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jaysonjeg/fmralign (BSD-3-Clause)

Status: code verified, 27 files readable, 2 matches

[25684] doi:10.1186/s42466-024-00334-3 [paper]

Multidisciplinary lifestyle interventions for neurological disorders during the Silent phase (MINDS) study: a multi-omics randomized controlled trial protocol.

Journal: Neurological research and practice

Status: code on request

[25685] doi:10.1371/journal.pone.0307962 [paper, repository]

Intravital two-photon microscopy of the native mouse thymus.

Journal: PloS one

Authors' code: SpencerLab-BIO/NativeThymusScripts (CC0-1.0)

Status: code verified, 10 files readable

[25686] doi:10.1371/journal.pone.0307970 [paper, repository]

Uncertainty quantification in neural-network based pain intensity estimation.

Journal: PloS one

Authors' code: burcuozek/predictioninterval (no license)

Status: code verified, 6 files readable, 2 matches

[25687] doi:10.14336/ad.2022.1210 [paper, repository]

Edge Density Imaging Identifies White Matter Biomarkers of Late-Life Obesity and Cognition.

Journal: Aging and disease

Authors' code: LLNL/MaPPeRTrac (BSD-3-Clause)

Status: code verified, 17 files readable, 1 match

[25688] doi:10.14336/ad.2023.0419 [paper, data]

Association of Arterial Stiffness Index and Brain Structure in the UK Biobank: A 10-Year Retrospective Analysis.

Journal: Aging and disease

Status: data only, 2 datasets cited

[25689] doi:10.14336/ad.2023.0707 [paper, repository]

Alzheimer Disease Pathology and Neurodegeneration in Midlife Obesity: A Pilot Study.

Journal: Aging and disease

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable, 1 match

[25690] doi:10.14336/ad.2023.0902 [paper, data]

Schizophrenia-Like Behaviors Arising from Dysregulated Proline Metabolism Are Associated with Altered Neuronal Morphology and Function in Mice with Hippocampal PRODH Deficiency.

Journal: Aging and disease

Status: data only, 1 dataset cited

[25691] doi:10.1523/eneuro.0138-24.2024 [paper, data]

Processing Language Partly Shares Neural Genetic Basis with Processing Tools and Body Parts.

Journal: eNeuro

Status: code on request, 1 dataset cited

[25692] doi:10.2337/dc24-0537 [paper, data]

Association of Metabolic Syndrome With Neuroimaging and Cognitive Outcomes in the UK Biobank.

Journal: Diabetes care

Status: data only, 1 dataset cited

[25693] doi:10.3389/fnbeh.2024.1331396 [paper, data]

EEG-based study of design creativity: a review on research design, experiments, and analysis.

Journal: Frontiers in behavioral neuroscience

Status: data only, 2 datasets cited

[25694] doi:10.3389/fnins.2024.1416431 [paper, repository]

Heart failure causally affects the brain cortical structure: a Mendelian randomization study.

Journal: Frontiers in neuroscience

Authors' code: shiqinchen/data (no license)

Status: code verified, 4 files readable

[25695] doi:10.3389/frai.2024.1369702 [paper, repository]

Deep learning for prediction of post-thrombectomy outcomes based on admission CT angiography in large vessel occlusion stroke.

Journal: Frontiers in artificial intelligence

Authors' code: Fledermaus12/LVOstroke-DL (no license)

Status: code verified, 13 files readable, 4 matches

[25696] doi:10.3390/biom14080933 [paper, repository]

Molecular Mimicry between &lt;i&gt;Toxoplasma gondii&lt;/i&gt; B-Cell Epitopes and Neurodevelopmental Proteins: An Immunoinformatic Approach.

Journal: Biomolecules

Authors' code: david-valle/2023-toxoplasma_epitopes (MIT)

Status: code verified, 27 files readable, 6 matches

[25697] doi:10.3390/brainsci14080783 [paper, data]

Abnormal Dynamic Reconstruction of Overlapping Communities in Schizophrenia Patients.

Journal: Brain sciences

Status: data only, 1 dataset cited

[25698] doi:10.3390/s24154979 [paper, data]

EEG Functional Connectivity Analysis for the Study of the Brain Maturation in the First Year of Life.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[25699] doi:10.3390/s24154989 [paper, data]

Exploring Feature Selection and Classification Techniques to Improve the Performance of an Electroencephalography-Based Motor Imagery Brain-Computer Interface System.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[25700] doi:10.7150/thno.98457 [paper, data]

The biphasic role of Hspb1 on ferroptotic cell death in Parkinson's disease.

Journal: Theranostics

Status: data only, 1 dataset cited

[25701] doi:10.7554/elife.89911 [paper, repository]

Determinantal point process attention over grid cell code supports out of distribution generalization.

Journal: eLife

Authors' code: insuhan/fastdppmap (no license), Shanka123/DPP-Attention_Grid-Cell-Code (MIT), supp:PMC11293867/elife-89911-code1.zip (no license)

Status: code verified, 50 files readable, 2 matches

[25702] doi:10.7554/elife.95821 [paper, data]

Bidirectional fear modulation by discrete anterior insular circuits in male mice.

Journal: eLife

Status: data only, 1 dataset cited

[25703] doi:10.7759/cureus.65922 [paper, repository]

Association Between Cannabis Use and Brain Structures: A Mendelian Randomization Study.

Journal: Cureus

Authors' code: MRCIEU/TwoSampleMR (other)

Status: code verified, 73 files readable, 2 matches

Wednesday, 31 July 2024 (36 papers)

[25704] doi:10.1007/s12035-024-04364-5 [paper, data]

Integrative mRNA and miRNA Expression Profiles from Developing Zebrafish Head Highlight Brain-Preference Genes and Regulatory Networks.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[25705] doi:10.1016/j.dcn.2024.101425 [paper, data]

Multi-site EEG studies in early infancy: Methods to enhance data quality.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[25706] doi:10.1016/j.isci.2024.110604 [paper]

Patient-derived tumor organoids mimic treatment-induced DNA damage response in glioblastoma.

Journal: iScience

Status: code on request

[25707] doi:10.1016/j.isci.2024.110619 [paper, data]

Epitranscriptomic reader YTHDF2 regulates SEK1(&lt;i&gt;MAP2K4&lt;/i&gt;)-JNK-cJUN inflammatory signaling in astrocytes during neurotoxic stress.

Journal: iScience

Status: code on request, 1 dataset cited

[25708] doi:10.1016/j.omtn.2024.102291 [paper]

Identification of selective and non-selective &lt;i&gt;C9ORF72&lt;/i&gt; targeting &lt;i&gt;in vivo&lt;/i&gt; active siRNAs.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[25709] doi:10.1038/s41467-024-50288-y [paper, repository]

Towards large-scale single-shot millimeter-wave imaging for low-cost security inspection.

Journal: Nature communications

Authors' code: Zenodo 11091264 (CC-BY-4.0), bianlab/MMW (no license)

Status: code verified, 5 files readable, 1 match

[25710] doi:10.1038/s41537-024-00475-z [paper]

Longitudinal study on hippocampal subfields and glucose metabolism in early psychosis.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[25711] doi:10.1038/s41586-024-07756-8 [paper, repository]

Organ systems of a Cambrian euarthropod larva.

Journal: Nature

Authors' code: morphobank.org/permalink (no license), smithlabdurham/phylo-workflow (no license), Zenodo 815372 (other-open), doi:10.6084/m9.figshare.c.6490717.v2 (no license), Zenodo 7838056 (other-open), mbrazeau/morphylib (GPL-3.0)

Status: code verified, 174 files readable, 3 matches

[25712] doi:10.1038/s41591-024-03152-x [paper, data]

Cranioencephalic functional lymphoid units in glioblastoma.

Journal: Nature medicine

Status: data only, 1 dataset cited

[25713] doi:10.1038/s41598-024-67120-8 [paper, repository]

Gamma amplitude-envelope correlations are strongly elevated within hyperexcitable networks in focal epilepsy.

Journal: Scientific reports

Authors' code: sccn.ucsd.edu/eeglab (no license)

Status: code verified

[25714] doi:10.1038/s41598-024-68626-x [paper, data]

GDNF/GFRA1 signaling contributes to chemo- and radioresistance in glioblastoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25715] doi:10.1038/s41598-024-68772-2 [paper]

A portable affective computing system for identifying mate preference.

Journal: Scientific reports

Status: code on request

[25716] doi:10.1038/s42005-024-01748-w [paper, repository]

Simulation-based inference of developmental EEG maturation with the spectral graph model.

Journal: Communications physics

Authors' code: Raj-Lab-UCSF/spectrome (MIT), dbernardo05/sbi-spectrome (GPL-3.0)

Status: code verified, 38 files readable, 3 matches

[25717] doi:10.1038/s44319-024-00198-3 [paper, data]

The DNA repair protein DNA-PKcs modulates synaptic plasticity via PSD-95 phosphorylation and stability.

Journal: EMBO reports

Status: data only, 1 dataset cited

[25718] doi:10.1088/1741-2552/ad5936 [paper, data]

Spatial transcriptomics at the brain-electrode interface in rat motor cortex and the relationship to recording quality.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[25719] doi:10.1093/braincomms/fcae254 [paper, repository]

Data-driven biomarkers better associate with stroke motor outcomes than theory-based biomarkers.

Journal: Brain communications

Authors' code: kjamison/nemo (MIT), emilyolafson/lesion_predictions (no license)

Status: code verified, 52 files readable, 21 matches

[25720] doi:10.1093/pnasnexus/pgae288 [paper, data]

Coupled oscillations orchestrate selective information transmission in visual cortex.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[25721] doi:10.1098/rspb.2024.0121 [paper, repository]

Mate choice in the brain: species differ in how male traits 'turn on' gene expression in female brains.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.5061/dryad.ncjsxkt3g (no license), doi:10.6084/m9.figshare.c.7353523 (no license), Zenodo 10901324 (MIT)

Status: code verified, 6 files readable, 5 matches

[25722] doi:10.1111/psyp.14663 [paper, data]

Unpleasant words can affect the detection of morphosyntactic errors: An ERP study on individual differences.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[25723] doi:10.1136/bmjresp-2023-002263 [paper, data]

Development and validation of a predictive model for pulmonary infection risk in patients with traumatic brain injury in the ICU: a retrospective cohort study based on MIMIC-IV.

Journal: BMJ open respiratory research

Status: data only, 1 dataset cited

[25724] doi:10.1161/jaha.123.035771 [paper, repository]

Rare Sequence Variation Underlying Suspected Familial Cerebral Small-Vessel Disease.

Journal: Journal of the American Heart Association

Authors' code: bioresource.nihr.ac.uk/using-our-bioresource/apply-for-bioresource-data-access (no license)

Status: code found, still to be checked

[25725] doi:10.1162/imag_a_00245 [paper, repository]

Feature attention graph neural network for estimating brain age and identifying important neural connections in mouse models of genetic risk for Alzheimer's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: hsmoon0/FAGNN (MIT)

Status: code verified, 14 files readable, 1 match

[25726] doi:10.1186/s12911-024-02615-y [paper, repository]

An ontology-based tool for modeling and documenting events in neurosurgery.

Journal: BMC medical informatics and decision making

Authors' code: phillord/hermit-reasoner (GNU)

Status: code verified, 271 files readable

[25727] doi:10.1186/s13065-024-01248-6 [paper, data]

In silico insights into the design of novel NR2B-selective NMDA receptor antagonists: QSAR modeling, ADME-toxicity predictions, molecular docking, and molecular dynamics investigations.

Journal: BMC chemistry

Status: data only, 1 dataset cited

[25728] doi:10.1242/jeb.247452 [paper, repository]

Gekko gecko as a model organism for understanding aspects of laryngeal vocal evolution.

Journal: The Journal of experimental biology

Authors' code: Zenodo 12188321 (CC-BY-4.0)

Status: code verified

[25729] doi:10.1371/journal.pcbi.1011728 [paper, data]

Multitask learning of a biophysically-detailed neuron model.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[25730] doi:10.1371/journal.pcbi.1011820 [paper, repository]

Population bursts in a modular neural network as a mechanism for synchronized activity in KNDy neurons.

Journal: PLoS computational biology

Authors' code: math.fsu.edu/~bertram/software (no license), math.fsu.edu/~bertram/papers (no license)

Status: code verified

[25731] doi:10.1371/journal.pcbi.1012354 [paper, repository]

Probabilistic neural transfer function estimation with Bayesian system identification.

Journal: PLoS computational biology

Authors' code: yongrong-qiu/BayesianNSI (MIT)

Status: code verified, 17 files readable, 4 matches

[25732] doi:10.1371/journal.pone.0306424 [paper, data]

Single-cell transcriptome analysis reveals distinct cell populations in dorsal root ganglia and their potential roles in diabetic peripheral neuropathy.

Journal: PloS one

Status: data only, 1 dataset cited

[25733] doi:10.1371/journal.pone.0306427 [paper, data]

A new perspective on binaural beats: Investigating the effects of spatially moving sounds on human mental states.

Journal: PloS one

Status: data only, 1 dataset cited

[25734] doi:10.3389/fcogn.2024.1433234 [paper, data]

Multiscale Functional Connectivity analysis of episodic memory reconstruction.

Journal: Frontiers in cognition

Status: data only, 1 dataset cited

[25735] doi:10.3389/fmolb.2024.1353828 [paper, data]

Role of 14-3-3 protein family in the pathobiology of EBV in immortalized B cells and Alzheimer's disease.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[25736] doi:10.3389/fncel.2024.1412897 [paper, data]

Regional heterogeneity in the membrane properties of mouse striatal neurons.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[25737] doi:10.3389/fninf.2024.1354708 [paper, repository]

Exploring white matter dynamics and morphology through interactive numerical phantoms: the White Matter Generator.

Journal: Frontiers in neuroinformatics

Authors' code: MaP-science/WhiteMatterGenerator (no license)

Status: code verified, 47 files readable, 7 matches

[25738] doi:10.3390/bioengineering11080773 [paper, repository]

A Novel Time-Frequency Parameterization Method for Oscillations in Specific Frequency Bands and Its Application on OPM-MEG.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: lucwilson/SPRiNT (Apache-2.0), tbardouille/papto_camcan (no license)

Status: code verified, 19 files readable, 6 matches

[25739] doi:10.3390/cells13151295 [paper, data]

Neonicotinoid Pesticides Affect Developing Neurons in Experimental Mouse Models and in Human Induced Pluripotent Stem Cell (iPSC)-Derived Neural Cultures and Organoids.

Journal: Cells

Status: data only, 1 dataset cited

Tuesday, 30 July 2024 (37 papers, 21 on this page)

[25740] doi:10.1016/j.ajhg.2024.06.018 [paper, repository]

RNA variant assessment using transactivation and transdifferentiation.

Journal: American journal of human genetics

Authors' code: ryanlister/RNA-variant-assessment-Nicolas-et-al-2024- (no license)

Status: dead link

[25741] doi:10.1016/j.bpj.2024.07.035 [paper, repository]

A hydrophobic funnel governs monovalent cation selectivity in the ion channel TRPM5.

Journal: Biophysical journal

Authors' code: cmives/Na_selectivity_mechanism_of_TRPM_channels (GPL-3.0), Zenodo 5522808 (other-open), drorlab/pensa (MIT)

Status: code verified, 140 files readable, 4 matches

[25742] doi:10.1016/j.heliyon.2024.e35126 [paper, repository]

Methylome analysis of endothelial cells suggests new insights on sporadic brain arteriovenous malformation.

Journal: Heliyon

Authors' code: dpryan79/MethylDackel (MIT)

Status: code verified, 13 files readable

[25743] doi:10.1016/j.isci.2024.110613 [paper, repository]

CelltypeR: A flow cytometry pipeline to characterize single cells from brain organoids.

Journal: iScience

Authors' code: RhalenaThomas/CelltypeR (no license)

Status: code verified, 22 files readable, 25 matches

[25744] doi:10.1016/j.isci.2024.110621 [paper]

BDNF-dependent nano-organization of Neogenin and the WAVE regulatory complex promotes actin remodeling in dendritic spines.

Journal: iScience

Status: code on request

[25745] doi:10.1021/acsomega.4c05365 [paper, repository]

Predicting lncRNA-Disease Associations Based on a Dual-Path Feature Extraction Network with Multiple Sources of Information Integration.

Journal: ACS omega

Authors' code: ydkvictory/DPFELDA (no license)

Status: code verified, 1 file readable

[25746] doi:10.1038/s41380-024-02678-3 [paper, repository]

Mediating and moderating effects of plasma proteomic biomarkers on the association between poor oral health problems and brain white matter microstructural integrity: the UK Biobank study.

Journal: Molecular psychiatry

Authors' code: baydounm/UKB-paper10-supplementarydata (no license), insight.olink.com (no license), bioinformatics.psb.ugent.be/webtools/venn (no license)

Status: code verified, 6 files readable, 6 matches

[25747] doi:10.1038/s41467-024-49568-4 [paper, repository]

Irrational choices via a curvilinear representational geometry for value.

Journal: Nature communications

Authors' code: OSF 8mkrd (no license)

Status: code verified, 40 files readable, 2 matches

[25748] doi:10.1038/s41467-024-50559-8 [paper, repository]

Aging drives cerebrovascular network remodeling and functional changes in the mouse brain.

Journal: Nature communications

Authors' code: Zenodo 11632487 (CC-BY-4.0), Zenodo 11632393 (CC-BY-4.0), yongsookimlab/vascular_nearest_neibor_distance (no license), yongsookimlab/tubemap_post_processing (no license)

Status: code verified, 20 files readable

[25749] doi:10.1038/s41467-024-50563-y [paper, repository]

Flexible neural population dynamics govern the speed and stability of sensory encoding in mouse visual cortex.

Journal: Nature communications

Authors' code: figshare 26031226 (CC-BY-4.0), eabhorrocks/Horrocksetal24_TemporalDynamics (no license), Zenodo 12801956 (CC-BY-4.0)

Status: code verified, 802 files readable, 17 matches

[25750] doi:10.1038/s41467-024-50608-2 [paper, repository]

Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign.

Journal: Nature communications

Authors' code: zhanglabtools/BrainAlign (MIT), Zenodo 11400872 (CC-BY-4.0)

Status: code verified, 553 files readable, 14 matches

[25751] doi:10.1038/s41467-024-50699-x [paper, repository]

Adult neurogenesis improves spatial information encoding in the mouse hippocampus.

Journal: Nature communications

Authors' code: Zenodo 10985968 (CC-BY-4.0), GoncalvesLab/Frechou-et-al-Neurogenesis (no license), Zenodo 10986236 (CC-BY-4.0)

Status: code verified, 26 files readable, 5 matches

[25752] doi:10.1038/s41467-024-50794-z [paper, repository]

A genetic-epigenetic interplay at 1q21.1 locus underlies CHD1L-mediated vulnerability to primary progressive multiple sclerosis.

Journal: Nature communications

Authors' code: jagodiclab/pahlevan_ppms_chd1l (no license)

Status: code verified, 2 files readable

[25753] doi:10.1038/s41467-024-50821-z [paper, repository]

Large-scale calcium imaging reveals a systematic V4 map for encoding natural scenes.

Journal: Nature communications

Authors' code: Zenodo 10972034 (CC-BY-4.0)

Status: code verified, 12 files readable, 1 match

[25754] doi:10.1038/s41540-024-00408-7 [paper]

Bifurcations in coupled amyloid-β aggregation-inflammation systems.

Journal: NPJ systems biology and applications

Status: code on request

[25755] doi:10.1038/s41598-024-68308-8 [paper]

Computer-aided prognosis of tuberculous meningitis combining imaging and non-imaging data.

Journal: Scientific reports

Status: code on request

[25756] doi:10.1038/s41598-024-68462-z [paper]

Astragaloside IV protects brain cells from ischemia-reperfusion injury by inhibiting ryanodine receptor expression and reducing the expression of P-Src and P-GRK2.

Journal: Scientific reports

Status: data only

[25757] doi:10.1038/s41598-024-68555-9 [paper, data]

Reliability of brain metrics derived from a Time-Domain Functional Near-Infrared Spectroscopy System.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25758] doi:10.1038/s41598-024-68585-3 [paper, data]

Identifying MSMO1, ELOVL6, AACS, and CERS2 related to lipid metabolism as biomarkers of Parkinson's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25759] doi:10.1038/s41598-024-68722-y [paper, data]

A prospective pilot study of gut microbiome in cerebral vasospasm and delayed cerebral ischemia after aneurysmal subarachnoid hemorrhage.

Journal: Scientific reports

Status: data only, 1 dataset cited

[25760] doi:10.1038/s44319-024-00205-7 [paper, data]

The Derlin-1-Stat5b axis maintains homeostasis of adult hippocampal neurogenesis.

Journal: EMBO reports

Status: data only, 2 datasets cited

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