Every paper, by date: page 117

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 117 of 200: 20 July 2024 to 11 July 2024.

Saturday, 20 July 2024 (14 papers, 1 on this page)

[25985] doi:10.3390/ijms25147935 [paper, data]

Comparative Proteomic Profiling of Blood Plasma Revealed Marker Proteins Involved in Temporal Lobe Epilepsy.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 19 July 2024 (29 papers)

[25986] doi:10.1002/acn3.52145 [paper, repository]

Axonal injury, sleep disturbances, and memory following traumatic brain injury.

Journal: Annals of clinical and translational neurology

Authors' code: cnelabneu/sleep_dti_tbi_paper (no license)

Status: code verified, 3 files readable, 3 matches

[25987] doi:10.1007/s40519-024-01675-3 [paper, repository]

Cortical thickness and childhood eating behaviors: differences according to sex and age, and relevance for eating disorders.

Journal: Eating and weight disorders : EWD

Authors' code: bkhundrakpam/Project-on-Childhood-Eating-Behaviours (no license)

Status: code verified, 4 files readable

[25988] doi:10.1016/j.cub.2024.06.057 [paper, repository]

Subcortical origin of nonlinear sound encoding in auditory cortex.

Journal: Current biology : CB

Authors' code: figshare 25943725 (CC-BY-4.0), ben-willmore/benware (no license), ben-willmore/population-communication-models (no license)

Status: code verified, 533 files readable, 3 matches

[25989] doi:10.1016/j.isci.2024.110549 [paper, repository]

Neuromodulatory co-expression in cardiac vagal motor neurons of the dorsal motor nucleus of the vagus.

Journal: iScience

Authors' code: Daniel-Baugh-Institute/DMV-Neuromodulator-Expression (no license)

Status: code verified, 3 files readable, 5 matches

[25990] doi:10.1016/j.isci.2024.110554 [paper, repository]

Long-working-distance high-collection-efficiency three-photon microscopy for <i>in vivo</i> long-term imaging of zebrafish and organoids.

Journal: iScience

Authors' code: AllenInstitute/deepinterpolation (BSD-2-Clause), AdaptiveMotorControlLab/CEBRA (Apache-2.0)

Status: code verified, 164 files readable, 1 match

[25991] doi:10.1016/j.neures.2024.07.003 [paper, repository]

Bidirectional valence coding in amygdala intercalated clusters: A neural substrate for the opponent-process theory of motivation.

Journal: Neuroscience research

Authors' code: data.fmi.ch/publicationsupplementrepo (no license)

Status: code verified

[25992] doi:10.1016/j.patter.2024.101025 [paper, repository]

EEG spectral attractors identify a geometric core of brain dynamics.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 11062690 (CC-BY-4.0), parhamp/emcm (MIT)

Status: code verified, 12 files readable, 1 match

[25993] doi:10.1038/s41420-024-02074-4 [paper, data]

Deletion in RMST lncRNA impairs hypothalamic neuronal development in a human stem cell-based model of Kallmann Syndrome.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[25994] doi:10.1038/s41539-024-00256-4 [paper]

Attenuated conflict self-referential information facilitating conflict resolution.

Journal: NPJ science of learning

Status: code on request

[25995] doi:10.1038/s41598-024-65910-8 [paper, data]

Avoidance of specific calibration sessions in motor intention recognition for exoskeleton-supported rehabilitation through transfer learning on EEG data.

Journal: Scientific reports

Status: data only, 2 datasets cited

[25996] doi:10.1038/s41598-024-66755-x [paper, repository]

Modeling hippocampal spatial cells in rodents navigating in 3D environments.

Journal: Scientific reports

Authors' code: modeldb:2016220 (no license)

Status: code verified

[25997] doi:10.1038/s41598-024-67034-5 [paper, repository]

Preparatory activity of anterior insula predicts conflict errors: integrating convolutional neural networks and neural mass models.

Journal: Scientific reports

Authors' code: Behzad-Iravani/CognitiveControl (no license)

Status: code verified, 28 files readable, 5 matches

[25998] doi:10.1038/s41598-024-67329-7 [paper, repository]

Targeted co-expression networks for the study of traits.

Journal: Scientific reports

Authors' code: aliciagp/TGCN (GPL-3.0)

Status: code verified, 7 files readable, 4 matches

[25999] doi:10.1038/s44220-024-00289-z [paper, repository]

Modeling impulsivity and risk aversion in the subthalamic nucleus with deep brain stimulation.

Journal: Nature. Mental health

Authors' code: VoonLab/Risk_STN_DBS_NatMH_Paper_Code (no license)

Status: code verified, 2 files readable, 1 match

[26000] doi:10.1073/pnas.2315438121 [paper, data]

Information structure in Makhuwa: Electrophysiological evidence for a universal processing account.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26001] doi:10.1126/sciadv.adk1256 [paper, repository]

Inductive biases of neural network modularity in spatial navigation.

Journal: Science advances

Authors' code: ryzhang1/Inductive_bias (Apache-2.0), Zenodo 10957521 (CC-BY-4.0)

Status: code verified, 62 files readable, 12 matches

[26002] doi:10.1126/sciadv.ado5264 [paper, data]

Huntingtin is an RNA binding protein and participates in &lt;i&gt;NEAT1&lt;/i&gt;-mediated paraspeckles.

Journal: Science advances

Status: data only, 1 dataset cited

[26003] doi:10.1126/sciadv.adp6039 [paper, repository]

Transcriptional dynamics orchestrating the development and integration of neurons born in the adult hippocampus.

Journal: Science advances

Authors' code: chernolabs/NeuronalSwitch (no license), Zenodo 11371903 (CC-BY-4.0)

Status: code verified, 26 files readable, 11 matches

[26004] doi:10.1186/s11658-024-00619-0 [paper, data]

Monitoring correlates of SARS-CoV-2 infection in cell culture using a two-photon-active calcium-sensitive dye.

Journal: Cellular & molecular biology letters

Status: data only, 1 dataset cited

[26005] doi:10.1186/s13195-024-01528-2 [paper, data]

High cognitive reserve attenuates the risk of dementia associated with cardiometabolic diseases.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[26006] doi:10.1371/journal.pcbi.1012245 [paper, repository]

Emergent effects of synaptic connectivity on the dynamics of global and local slow waves in a large-scale thalamocortical network model of the human brain.

Journal: PLoS computational biology

Authors' code: gin.g-node.org/bmduffy/slow_wave_sleep (CC0-1.0)

Status: code verified, 13 files readable, 1 match

[26007] doi:10.3389/fnagi.2024.1386944 [paper, repository]

Lamivudine modulates the expression of neurological impairment-related genes and LINE-1 retrotransposons in brain tissues of a Down syndrome mouse model.

Journal: Frontiers in aging neuroscience

Authors' code: MicrobialGenomics-IrsicaixaOrg/Lamivudine_mice_RNAseq (no license)

Status: code verified, 5 files readable, 4 matches

[26008] doi:10.3389/fnins.2024.1400499 [paper, repository]

Fast multi-compartment Microstructure Fingerprinting in brain white matter.

Journal: Frontiers in neuroscience

Authors' code: Hyedryn/FastMF_paper (no license)

Status: code verified, 13 files readable, 3 matches

[26009] doi:10.3389/fpsyg.2024.1331997 [paper, repository]

Evaluating EEG neurofeedback in sport psychology: a systematic review of RCT studies for insights into mechanisms and performance improvement.

Journal: Frontiers in psychology

Authors' code: figshare 1335990 (CC-BY-4.0)

Status: code verified

[26010] doi:10.3390/brainsci14070726 [paper, repository]

Hyperacusis in Tinnitus Individuals Is Associated with Smaller Gray Matter Volumes in the Supplementary Motor Area Regardless of Hearing Levels.

Journal: Brain sciences

Authors' code: www0.cs.ucl.ac.uk/staff/g.ridgway (no license)

Status: code verified

[26011] doi:10.3390/cells13141217 [paper, data]

Widespread Distribution of Luteinizing Hormone/Choriogonadotropin Receptor in Human Juvenile Angiofibroma: Implications for a Sex-Specific Nasal Tumor.

Journal: Cells

Status: data only, 1 dataset cited

[26012] doi:10.5498/wjp.v14.i7.1034 [paper]

Impact of early refined nursing program on prognosis of middle-aged and elderly patients with cognitive dysfunction combined with cerebral infarction.

Journal: World journal of psychiatry

Status: code on request

[26013] doi:10.7554/elife.95849 [paper, data]

Prediction error determines how memories are organized in the brain.

Journal: eLife

Status: data only, 1 dataset cited

[26014] doi:10.7717/peerj.17721 [paper, data]

Emotion brain network topology in healthy subjects following passive listening to different auditory stimuli.

Journal: PeerJ

Status: data only, 1 dataset cited

Thursday, 18 July 2024 (21 papers)

[26015] doi:10.1016/j.isci.2024.110535 [paper]

H-Ras induces exuberant &lt;i&gt;de novo&lt;/i&gt; dendritic protrusion growth in mature neurons regardless of cell type.

Journal: iScience

Status: code on request

[26016] doi:10.1016/j.media.2024.103278 [paper, repository]

Generating multi-pathological and multi-modal images and labels for brain MRI.

Journal: Medical image analysis

Authors' code: virginiafdez/brainSPADE23D (no license), Project-MONAI/GenerativeModels (Apache-2.0)

Status: code verified, 269 files readable, 8 matches

[26017] doi:10.1021/acs.jmedchem.4c00629 [paper, data]

Discovery of Two Highly Selective Structurally Orthogonal Chemical Probes for Activin Receptor-like Kinases 1 and 2.

Journal: Journal of medicinal chemistry

Status: data only, 3 datasets cited

[26018] doi:10.1038/s41419-024-06903-3 [paper, data]

ID2-ETS2 axis regulates the transcriptional acquisition of pro-tumoral microglia phenotype in glioma.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[26019] doi:10.1038/s41467-024-50309-w [paper, repository]

Eye-brain connections revealed by multimodal retinal and brain imaging genetics.

Journal: Nature communications

Authors' code: mkirchler/transferGWAS (MIT)

Status: code verified, 19 files readable, 5 matches

[26020] doi:10.1038/s41598-024-67153-z [paper, repository]

Structural and sequential regularities modulate phrase-rate neural tracking.

Journal: Scientific reports

Authors' code: OSF fw7bc (no license)

Status: code verified, 5 files readable, 2 matches

[26021] doi:10.1038/s41598-024-67316-y [paper, data]

Enduring maternal brain changes and their role in mediating motherhood's impact on well-being.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26022] doi:10.1093/gastro/goae067 [paper, data]

Spatial transcriptomics of gastric cancer brain metastasis reveals atypical vasculature strategies with supportive immune profiles.

Journal: Gastroenterology report

Status: data only, 1 dataset cited

[26023] doi:10.1111/cdev.14124 [paper, data]

Olfactory-to-visual facilitation in the infant brain declines gradually from 4 to 12 months.

Journal: Child development

Status: data only, 1 dataset cited

[26024] doi:10.1186/s12859-024-05865-9 [paper, repository]

HEROIC: a platform for remote collection of electroencephalographic data using consumer-grade brain wearables.

Journal: BMC bioinformatics

Authors' code: diamandis-lab/heroic (no license)

Status: code verified, 2,000 files readable, 1 match

[26025] doi:10.1186/s12877-024-05219-3 [paper, data]

Diagnostic accuracy, reliability, and construct validity of the German quick mild cognitive impairment screen.

Journal: BMC geriatrics

Status: data only, 1 dataset cited

[26026] doi:10.1186/s12987-024-00559-z [paper, repository]

Cerebrospinal fluid-based spatial statistics: towards quantitative analysis of cerebrospinal fluid pseudodiffusivity.

Journal: Fluids and barriers of the CNS

Authors' code: Yutong441/CBSS (no license)

Status: code verified, 27 files readable, 10 matches

[26027] doi:10.1186/s13287-024-03827-9 [paper, data]

Biological characteristics of tissue engineered-nerve grafts enhancing peripheral nerve regeneration.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[26028] doi:10.1371/journal.pbio.3002729 [paper, repository]

Behavioral adjustment of C. elegans to mechanosensory loss requires intact mechanosensory neurons.

Journal: PLoS biology

Authors' code: Zenodo 12193275 (CC-BY-4.0), Zenodo 12193290 (CC-BY-4.0), Zenodo 12193342 (CC-BY-4.0), RabinowitchLab/RecordGUI (no license), RabinowitchLab/TREX (no license), RabinowitchLab/NeuroShine (no license)

Status: code verified, 33 files readable, 2 matches

[26029] doi:10.1371/journal.pone.0305902 [paper, data]

Conservative method for vertical electrooculogram attenuation based on local suppression of ongoing EEG artifact templates.

Journal: PloS one

Status: data only, 1 dataset cited

[26030] doi:10.1523/eneuro.0117-24.2024 [paper, repository]

Cortical Face-Selective Responses Emerge Early in Human Infancy.

Journal: eNeuro

Authors' code: OSF h7rbv (no license)

Status: code verified, 5 files readable, 2 matches

[26031] doi:10.3389/fncom.2024.1398851 [paper, repository]

Hippocampal formation-inspired global self-localization: quick recovery from the kidnapped robot problem from an egocentric perspective.

Journal: Frontiers in computational neuroscience

Authors' code: ryuichiueda/emcl2 (LGPL-3.0)

Status: code verified, 22 files readable

[26032] doi:10.3389/fonc.2024.1400341 [paper, data]

A fine-tuned vision transformer based enhanced multi-class brain tumor classification using MRI scan imagery.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[26033] doi:10.3389/fpsyg.2024.1396946 [paper, data]

Unconscious multisensory integration: behavioral and neural evidence from subliminal stimuli.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[26034] doi:10.7554/elife.88173 [paper, repository]

A synergistic workspace for human consciousness revealed by Integrated Information Decomposition.

Journal: eLife

Authors' code: frantisekvasa/rotate_parcellation (MIT), Imperial-MIND-lab/integrated-info-decomp (BSD-3-Clause), sites.google.com/site/bctnet (no license)

Status: code verified, 21 files readable

[26035] doi:10.7717/peerj.17398 [paper, repository]

Automated identification and segmentation of urine spots based on deep-learning.

Journal: PeerJ

Authors' code: figshare 25538596 (CC-BY-4.0), supp:PMC11260409/peerj-12-17398-s004.py (no license)

Status: code verified, 1 file readable

Wednesday, 17 July 2024 (50 papers)

[26036] doi:10.1007/s00429-024-02814-3 [paper, repository]

A preliminary study of white matter disconnections underlying deficits in praxis in left hemisphere stroke patients.

Journal: Brain structure & function

Authors' code: vale-pak/single-case-neuroimg (no license)

Status: empty repository

[26037] doi:10.1007/s00429-024-02823-2 [paper, repository]

Comparative analysis of the chimpanzee and human brain superficial structural connectivities.

Journal: Brain structure & function

Authors' code: framagit.org/cpoupon/gkg (other), neurospin/point-cloud-pattern-mining (no license), Zenodo 7253494 (other-open)

Status: code verified, 2,056 files readable, 8 matches

[26038] doi:10.1007/s11336-024-09986-1 [paper, repository]

Comparing Functional Trend and Learning among Groups in Intensive Binary Longitudinal Eye-Tracking Data using By-Variable Smooth Functions of GAMM.

Journal: Psychometrika

Authors' code: OSF q3e7u (no license)

Status: code verified, 1 file readable

[26039] doi:10.1016/j.biopsych.2024.07.009 [paper, data]

Transthyretin Orchestrates Vitamin B12-Induced Stress Resilience.

Journal: Biological psychiatry

Status: data only, 1 dataset cited

[26040] doi:10.1016/j.celrep.2024.114483 [paper, repository]

Excessive firing of dyskinesia-associated striatal direct pathway neurons is gated by dopamine and excitatory synaptic input.

Journal: Cell reports

Authors' code: UCSF-Nelson-Lab/TRAP-Rabies-Analysis (no license), UCSF-Nelson-Lab/TRAP-In-Vivo-Analysis (no license), UCSF-Nelson-Lab/TRAP-RNAscope-Analysis (no license), UCSF-Nelson-Lab/open-field-analysis (MIT)

Status: code verified, 12 files readable, 4 matches

[26041] doi:10.1016/j.celrep.2024.114521 [paper, repository]

Mixing novel and familiar cues modifies representations of familiar visual images and affects behavior.

Journal: Cell reports

Authors' code: buzsakilab/buzcode (GPL-3.0)

Status: code verified, 2,000 files readable, 2 matches

[26042] doi:10.1016/j.heliyon.2024.e34401 [paper, data]

Clinical utility of fMRI in evaluating of LSD effect on pain-related brain networks in healthy subjects.

Journal: Heliyon

Status: data only, 1 dataset cited

[26043] doi:10.1016/j.isci.2024.110512 [paper, repository]

Circuit-motivated generalized affine models characterize stimulus-dependent visual cortical shared variability.

Journal: iScience

Authors' code: tinaxia2016/NeuronalVariabilityStatsModels (no license)

Status: code verified, 7 files readable, 6 matches

[26044] doi:10.1016/j.omtm.2024.101300 [paper]

Treating late-onset Tay Sachs disease: Brain delivery with a dual trojan horse protein.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[26045] doi:10.1038/s41467-024-49895-6 [paper, repository]

Contributions of cortical neuron firing patterns, synaptic connectivity, and plasticity to task performance.

Journal: Nature communications

Authors' code: albannalab/InsanallyAlbanna-NatComm-2024 (no license), Zenodo 11221989 (CC-BY-4.0)

Status: code verified, 76 files readable, 7 matches

[26046] doi:10.1038/s41467-024-50103-8 [paper, repository]

Placebo treatment affects brain systems related to affective and cognitive processes, but not nociceptive pain.

Journal: Nature communications

Authors' code: canlab/CanlabCore (GPL-2.0), rotemb9/paingen-placebo-fmri-paper (MIT)

Status: code verified, 2,008 files readable, 22 matches

[26047] doi:10.1038/s41467-024-50267-3 [paper, repository]

Neurostructural subgroup in 4291 individuals with schizophrenia identified using the subtype and stage inference algorithm.

Journal: Nature communications

Authors' code: ucl-pond (no license), YuchaoJiang91/ENIGMA-SCZ-SuStaIn-Subtype (no license)

Status: code verified, 4 files readable, 1 match

[26048] doi:10.1038/s41467-024-50378-x [paper, repository]

Learning interpretable dynamics of stochastic complex systems from experimental data.

Journal: Nature communications

Authors' code: Ting-TingGao/Network-SDE-Inference (MIT), Zenodo 12112887 (CC-BY-4.0)

Status: code verified, 29 files readable, 4 matches

[26049] doi:10.1038/s41467-024-50388-9 [paper, repository]

Anterior cingulate cortex provides the neural substrates for feedback-driven iteration of decision and value representation.

Journal: Nature communications

Authors' code: ChenWq2023/ACC (no license), Zenodo 12177591 (CC-BY-4.0)

Status: code verified, 120 files readable, 3 matches

[26050] doi:10.1038/s41540-024-00401-0 [paper, repository]

A deep position-encoding model for predicting olfactory perception from molecular structures and electrostatics.

Journal: NPJ systems biology and applications

Authors' code: pyrfume/pyrfume-data (MIT), Q-bio-at-IIS/Mol-PECO (no license)

Status: code verified, 102 files readable, 5 matches

[26051] doi:10.1038/s41586-024-07624-5 [paper, repository]

Psilocybin desynchronizes the human brain.

Journal: Nature

Authors' code: wustl.box.com/s/dmj5s3h9pxt9bcw9mm3ai9c15y756o79 (no license), siegelandthebrain1/Psilocybin_PFM (no license), DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause), MidnightScanClub/SCAN (MIT), OSF 2vt79 (no license)

Status: code verified, 626 files readable, 16 matches

[26052] doi:10.1038/s41597-024-03606-4 [paper, repository]

Normative longitudinal EEG recordings during sleep stage II in the first year of age.

Journal: Scientific data

Authors' code: eduardo-aubert/BIDS-Conversion-Code (no license)

Status: code verified, 1 file readable

[26053] doi:10.1038/s41597-024-03624-2 [paper, repository]

A diffusion MRI tractography atlas for concurrent white matter mapping across Eastern and Western populations.

Journal: Scientific data

Authors' code: pnlbwh/pnlpipe (other), pnlbwh/cnn-diffusion-mribrain-segmentation (other), pnlbwh/dmriharmonization (other), pnlbwh/ukftractography (other), SlicerDMRI/whitematteranalysis (other)

Status: code verified, 341 files readable, 8 matches

[26054] doi:10.1038/s41597-024-03634-0 [paper, repository]

A Multi-Center, Multi-Parametric MRI Dataset of Primary and Secondary Brain Tumors.

Journal: Scientific data

Authors' code: hongweilibran/MOTUM (MIT), hub.docker.com/repository/docker (no license)

Status: code verified, 5 files readable, 4 matches

[26055] doi:10.1038/s41598-024-67262-9 [paper, data]

Light wavelength modulates search behavior performance in zebrafish.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26056] doi:10.1038/s41598-024-67303-3 [paper, data]

Distribution of control during bimanual movement and stabilization.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26057] doi:10.1038/s42003-024-06404-1 [paper, data]

Electrokinetic convection-enhanced delivery for infusion into the brain from a hydrogel reservoir.

Journal: Communications biology

Status: data only, 1 dataset cited

[26058] doi:10.1038/s42003-024-06574-y [paper, repository]

An externally validated resting-state brain connectivity signature of pain-related learning.

Journal: Communications biology

Authors' code: kincsesbalint/paintone_rsn (no license), Zenodo 12699040 (CC-BY-4.0)

Status: code verified, 26 files readable, 8 matches

[26059] doi:10.1073/pnas.2403648121 [paper, repository]

Memory's gatekeeper: The role of PFC in the encoding of congruent events.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: inesCompleto/role_PFC_consolidation (no license)

Status: code verified, 3 files readable, 6 matches

[26060] doi:10.1093/braincomms/fcae183 [paper, repository]

Clinical criteria for a limbic-predominant amnestic neurodegenerative syndrome.

Journal: Brain communications

Authors' code: nickcorriveaul/R_scripts_manuscripts (no license)

Status: code verified, 1 file readable, 3 matches

[26061] doi:10.1093/braincomms/fcae240 [paper, repository]

Development of a machine learning algorithm to predict the residual cognitive reserve index.

Journal: Brain communications

Authors' code: begavett/APPROX-CR (MIT)

Status: code verified, 5 files readable, 3 matches

[26062] doi:10.1098/rsob.230419 [paper, repository]

Genetic evidence for serum amyloid P component as a drug target in neurodegenerative disorders.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7308163 (no license)

Status: code found, still to be checked

[26063] doi:10.1098/rspb.2024.0958 [paper, repository]

The blushing brain: neural substrates of cheek temperature increase in response to self-observation.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7344383 (no license)

Status: code found, still to be checked

[26064] doi:10.1109/jtehm.2024.3430035 [paper, repository]

XAI-Based Assessment of the AMURA Model for Detecting Amyloid-β and Tau Microstructural Signatures in Alzheimer's Disease.

Journal: IEEE journal of translational engineering in health and medicine

Authors' code: shap (no license), marcotcr/lime (BSD-2-Clause)

Status: code verified, 18 files readable

[26065] doi:10.1126/sciadv.adk1817 [paper, repository]

In vivo mapping of cellular resolution neuropathology in brain ischemia with diffusion MRI.

Journal: Science advances

Authors' code: Zenodo 10651812 (CC-BY-4.0), Zenodo 10651814 (CC-BY-4.0), leehhtw/monte-carlo-simulation-cylinder-sphere (MIT), leehhtw/monte-carlo-simulation-3d-rms-exchange (MIT)

Status: code verified, 160 files readable, 6 matches

[26066] doi:10.1152/jn.00135.2024 [paper, repository]

Development of neuronal timescales in human cortical organoids and rat hippocampus dissociated cultures.

Journal: Journal of neurophysiology

Authors' code: voytekresearch/timescale_development (no license)

Status: code verified, 7 files readable, 2 matches

[26067] doi:10.1159/000540106 [paper, data]

Dendritic Morphology of Developing Hippocampal Neurons in Cyp11a1 Null Mice.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[26068] doi:10.1162/imag_a_00229 [paper, data]

Fixating targets in visual search: The role of dorsal and ventral attention networks in the processing of relevance and rarity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[26069] doi:10.1162/imag_a_00230 [paper, repository]

An anesthetic protocol for preserving functional network structure in the marmoset monkey brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: LJeub/HierarchicalConsensus (BSD-3-Clause)

Status: code verified, 23 files readable

[26070] doi:10.1162/imag_a_00231 [paper]

The dissociative role of bursting and non-bursting neural activity in the oscillatory nature of functional brain networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[26071] doi:10.1162/imag_a_00233 [paper, repository]

Multilayer meta-matching: Translating phenotypic prediction models from multiple datasets to small data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: thomasyeolab/cbig (MIT), thomasyeolab/meta_matching_models (MIT)

Status: code verified, 2,012 files readable, 10 matches

[26072] doi:10.1162/imag_a_00234 [paper, repository]

Higher general intelligence is associated with stable, efficient, and typical dynamic functional brain connectivity patterns.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: 14jwkn/FLEXCOG (BSD-2-Clause)

Status: code verified, 59 files readable, 22 matches

[26073] doi:10.1162/imag_a_00236 [paper, repository]

Apnoea suppresses brain activity in infants.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: paediatric_neuroimaging/identify_ibi_from_ip (no license), CoenZandvoort/Apnoea_EEG_term_infants (no license)

Status: code verified, 6 files readable, 7 matches

[26074] doi:10.1162/imag_a_00238 [paper]

BOLD fMRI responses to amplitude-modulated sounds across age in adult listeners.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[26075] doi:10.1242/dev.202719 [paper, repository]

Specification and survival of post-metamorphic branchiomeric neurons in a non-vertebrate chordate.

Journal: Development (Cambridge, England)

Authors' code: OSF uc32x (no license)

Status: code verified, 1 file readable

[26076] doi:10.1371/journal.pone.0301940 [paper, data]

Down-modulation of functional ventral striatum activation for emotional face stimuli in patients with insula damage.

Journal: PloS one

Status: data only, 1 dataset cited

[26077] doi:10.1523/eneuro.0023-24.2024 [paper, repository]

Comparing the Representation of a Simple Visual Stimulus across the Cerebellar Network.

Journal: eNeuro

Authors' code: Zenodo 11208720 (other-open), portugueslab/prat_et_al (BSD-3-Clause)

Status: code verified, 62 files readable, 6 matches

[26078] doi:10.1523/eneuro.0043-24.2024 [paper, repository]

Neural Filtering of Physiological Tremor Oscillations to Spinal Motor Neurons Mediates Short-Term Acquisition of a Skill Learning Task.

Journal: eNeuro

Authors' code: figshare 23703804 (CC-BY-4.0)

Status: code verified, 1 file readable

[26079] doi:10.1523/eneuro.0069-24.2024 [paper, data]

Topographic Organization of Glutamatergic and GABAergic Parvalbumin-Positive Neurons in the Lateral Habenula.

Journal: eNeuro

Status: data only, 1 dataset cited

[26080] doi:10.21203/rs.3.rs-4371623/v1 [paper, repository]

SIRT6-dependent functional switch via K494 modifications of RE-1 Silencing Transcription factor

Journal: Research Square (preprint)

Authors' code: Zenodo 1078561910 (no license)

Status: dead link

[26081] doi:10.3389/fnhum.2024.1390714 [paper, repository]

A generic error-related potential classifier based on simulated subjects.

Journal: Frontiers in human neuroscience

Authors' code: lrkrol/SEREEGA (no license)

Status: code verified, 113 files readable, 1 match

[26082] doi:10.3389/fonc.2024.1382394 [paper, repository]

The landscape of cancer-associated transcript fusions in adult brain tumors: a longitudinal assessment in 140 patients with cerebral gliomas and brain metastases.

Journal: Frontiers in oncology

Authors' code: iontorrent/TMAP (other)

Status: code verified, 180 files readable

[26083] doi:10.3390/biomedicines12071590 [paper, data]

Dopamine Receptors and TAAR1 Functional Interaction Patterns in the Duodenum Are Impaired in Gastrointestinal Disorders.

Journal: Biomedicines

Status: data only, 1 dataset cited

[26084] doi:10.7554/elife.91650 [paper, repository]

Modulation of alpha oscillations by attention is predicted by hemispheric asymmetry of subcortical regions.

Journal: eLife

Authors' code: tghafari/Subcortical_structures (MIT), OSF 7bk32 (no license)

Status: code verified, 48 files readable, 5 matches

[26085] doi:10.7554/elife.94276 [paper, repository]

Mapping responses to focal injections of bicuculline in the lateral parafacial region identifies core regions for maximal generation of active expiration.

Journal: eLife

Authors' code: mprosteb/Pisanski2024 (GPL-3.0)

Status: code verified, 8 files readable, 3 matches

Tuesday, 16 July 2024 (27 papers)

[26086] doi:10.1007/s00429-024-02833-0 [paper, data]

Sex-related variability of white matter tracts in the whole HCP cohort.

Journal: Brain structure & function

Status: data only, 3 datasets cited

[26087] doi:10.1007/s10994-024-06574-3 [paper, repository]

XAI-TRIS: non-linear image benchmarks to quantify false positive post-hoc attribution of feature importance.

Journal: Machine learning

Authors' code: braindatalab/xai-tris (GPL-3.0)

Status: code verified, 28 files readable, 7 matches

[26088] doi:10.1016/j.celrep.2024.114503 [paper, repository]

Synaptic plasticity in human thalamocortical assembloids.

Journal: Cell reports

Authors' code: ZakharenkoLab/Thalamic_and_Cortical_Organoid_snRNASeq (MIT), Zenodo 12559453 (CC-BY-4.0)

Status: code verified, 12 files readable, 7 matches

[26089] doi:10.1016/j.celrep.2024.114519 [paper, repository]

Circuit dynamics of superficial and deep CA1 pyramidal cells and inhibitory cells in freely moving macaques.

Journal: Cell reports

Authors' code: hoffman-lab/manuscripts (no license), petersenpeter/phy2-plugins (no license)

Status: code verified, 2,012 files readable, 29 matches

[26090] doi:10.1016/j.dib.2024.110756 [paper, data]

Dataset for clinical parameters and disease transcriptome networks associated with exposure to citalopram in zebrafish (&lt;i&gt;Danio rerio&lt;/i&gt;) larvae.

Journal: Data in brief

Status: data only, 1 dataset cited

[26091] doi:10.1016/j.xgen.2024.100609 [paper, repository]

Rare variation in non-coding regions with evolutionary signatures contributes to autism spectrum disorder risk.

Journal: Cell genomics

Authors' code: Simon-Coetzee/motifBreakR (no license)

Status: code verified, 14 files readable, 5 matches

[26092] doi:10.1016/j.ynirp.2024.100214 [paper, repository]

FreeSurfer version-shuffling can enhance brain age predictions.

Journal: Neuroimage. Reports

Authors' code: MaxKorbmacher/FS_BrainAge (no license)

Status: code verified, 22 files readable, 9 matches

[26093] doi:10.1038/s41467-024-49608-z [paper, repository]

A multiomic atlas of the aging hippocampus reveals molecular changes in response to environmental enrichment.

Journal: Nature communications

Authors' code: liulab-dfci/lisa2 (MIT), Zenodo 8372431 (no license)

Status: code verified, 184 files readable, 40 matches

[26094] doi:10.1038/s41467-024-49823-8 [paper, repository]

Hippocampal connectivity patterns echo macroscale cortical evolution in the primate brain.

Journal: Nature communications

Authors' code: Zenodo 6360647 (CC-BY-4.0), khanlab/hippunfold (MIT), git.fmrib.ox.ac.uk/neichert/project_hipmac (no license), Zenodo 11371630 (Apache-2.0)

Status: code verified, 96 files readable, 15 matches

[26095] doi:10.1038/s41467-024-50112-7 [paper, repository]

Distinct neural mechanisms for heading retrieval and context recognition in the hippocampus during spatial reorientation.

Journal: Nature communications

Authors' code: Zenodo 11454686 (CC-BY-4.0), htmlpreview.github.io (no license), zhoupc/CNMF_E (GPL-3.0), zivlab/CellReg (GPL-2.0), marcnormandin/MiniscopeAnalysis_CNMF_E (GPL-3.0), mathworks.com/matlabcentral/answers (no license), Zenodo 11390953 (CC-BY-4.0), Zenodo 11391365 (CC-BY-4.0), Zenodo 11390947 (CC-BY-4.0), marcnormandin/chengs_task_2c_ca1 (no license), marcnormandin/chengs_task_2c_ca1_mulana (no license), celiagagliardi/two_context (no license)

Status: code verified, 1,695 files readable, 25 matches

[26096] doi:10.1038/s41467-024-50114-5 [paper, repository]

Biophysical neural adaptation mechanisms enable artificial neural networks to capture dynamic retinal computation.

Journal: Nature communications

Authors' code: saadidrees/dynret (Apache-2.0), Zenodo 11406087 (CC-BY-4.0), Zenodo 11406086 (CC-BY-4.0)

Status: code verified, 42 files readable, 3 matches

[26097] doi:10.1038/s41592-024-02346-y [paper, repository]

A cortical surface template for human neuroscience.

Journal: Nature methods

Authors' code: feilong.github.io/tpl-onavg (no license), Zenodo 10535655 (CC-BY-4.0)

Status: code verified

[26098] doi:10.1038/s41598-024-63567-x [paper, data]

IRAK4 is an immunological checkpoint in neuropsychiatric systemic lupus erythematosus.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26099] doi:10.1038/s41598-024-66228-1 [paper, repository]

Image classification and reconstruction from low-density EEG.

Journal: Scientific reports

Authors' code: mitmedialab/eegreconstruction (no license)

Status: code verified, 68 files readable, 16 matches

[26100] doi:10.1038/s41598-024-67365-3 [paper, repository]

Prediction of hematoma expansion in spontaneous intracerebral hemorrhage using a multimodal neural network.

Journal: Scientific reports

Authors' code: AI-neurosurg/Multimodal-network-for-predicting-hematoma-expansion-in-ICH (no license)

Status: code verified, 9 files readable, 12 matches

[26101] doi:10.1038/s41598-024-67469-w [paper, data]

Delta waves as a sign of cortical plasticity after full-face transplantation.

Journal: Scientific reports

Status: data only, 2 datasets cited

[26102] doi:10.1088/1741-2552/ad5c04 [paper, repository]

A machine learning artefact detection method for single-channel infant event-related potential studies.

Journal: Journal of neural engineering

Authors' code: Zenodo 11474626 (CC-BY-4.0), simonmarchant/eeg-artefact-detection (GPL-3.0)

Status: code verified, 70 files readable, 9 matches

[26103] doi:10.1186/s12974-024-03164-x [paper, data]

PARK7/DJ-1 deficiency impairs microglial activation in response to LPS-induced inflammation.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[26104] doi:10.12688/wellcomeopenres.21282.1 [paper, data]

Improving infant Neurocognitive Development and Growth Outcomes with micronutrients (INDiGO): A protocol for an efficacy trial in rural Gambia.

Journal: Wellcome open research

Status: data only, 1 dataset cited

[26105] doi:10.1371/journal.pbio.3002646 [paper, repository]

Deep brain stimulation of the Tbr1-deficient mouse model of autism spectrum disorder at the basolateral amygdala alters amygdalar connectivity, whole-brain synchronization, and social behaviors.

Journal: PLoS biology

Authors' code: HsuehYiPing/Tbr1Amyg (MIT), Zenodo 12591119 (CC-BY-4.0)

Status: code verified, 22 files readable, 20 matches

[26106] doi:10.21037/qims-24-236 [paper, repository]

Cortical microstructural abnormalities in amyotrophic lateral sclerosis: a gray matter-based spatial statistics study.

Journal: Quantitative imaging in medicine and surgery

Authors' code: arash-n/GBSS (CC-BY-NC-4.0)

Status: code verified, 11 files readable, 2 matches

[26107] doi:10.22551/2024.43.1102.10291 [paper, repository]

Ocrelizumab-induced organizing pneumonia in multiple sclerosis: case report and literature review.

Journal: Archive of clinical cases

Authors' code: Zenodo 10200370 (CC-BY-4.0)

Status: empty repository

[26108] doi:10.3389/fnint.2024.1430950 [paper, data]

Electrophysiological responses to appetitive and consummatory behavior in the rostral nucleus tractus solitarius in awake, unrestrained rats.

Journal: Frontiers in integrative neuroscience

Status: data only, 1 dataset cited

[26109] doi:10.3390/ijms25147775 [paper, data]

Analysis of the Skin and Brain Transcriptome of Normally Pigmented and Pseudo-Albino Southern Flounder (<i>Paralichthys lethostigma</i>) Juveniles to Study the Molecular Mechanisms of Hypopigmentation and Its Implications for Species Survival in the Natural Environment.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[26110] doi:10.3390/ijms25147782 [paper, data]

De Novo &lt;i&gt;DNM1L&lt;/i&gt; Mutation in a Patient with Encephalopathy, Cardiomyopathy and Fatal Non-Epileptic Paroxysmal Refractory Vomiting.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[26111] doi:10.7554/elife.90713 [paper, repository]

Translational regulation enhances distinction of cell types in the nervous system.

Journal: eLife

Authors' code: Zenodo 10637789 (CC-BY-4.0)

Status: code verified, 4 files readable

[26112] doi:10.7554/elife.97114 [paper, repository]

Differential functions of the dorsal and intermediate regions of the hippocampus for optimal goal-directed navigation in VR space.

Journal: eLife

Authors' code: Zenodo 12593588 (CC-BY-4.0), hhwang28/hwang-et-al.-elife-2024 (no license)

Status: code verified, 4 files readable

Monday, 15 July 2024 (35 papers)

[26113] doi:10.1002/advs.202400061 [paper, repository]

Morphological Brain Networks of White Matter: Mapping, Evaluation, Characterization, and Application.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: juryxy/JuSpace (no license), Junle-1995/Morphological-WMNs (MIT)

Status: code verified, 266 files readable, 20 matches

[26114] doi:10.1016/j.cdnut.2024.104418 [paper]

A Sensitive Method for Determination 1,25-Dihydroxyvitamin D3 in Human Brain using Ultra-Pressure Liquid Chromatography Tandem Mass Spectrometry.

Journal: Current developments in nutrition

Status: code on request

[26115] doi:10.1016/j.heliyon.2024.e34593 [paper, data]

PD-DETECTOR: A sustainable and computationally intelligent mobile application model for Parkinson's disease severity assessment.

Journal: Heliyon

Status: data only, 1 dataset cited

[26116] doi:10.1016/j.isci.2024.110370 [paper]

Genome-wide association reveals a locus in neuregulin 3 associated with gabapentin efficacy in women with chronic pelvic pain.

Journal: iScience

Status: code on request

[26117] doi:10.1016/j.jbc.2024.107568 [paper, repository]

iMSC exosome delivers hsa-mir-125b-5p and strengthens acidosis resilience through suppression of ASIC1 protein in cerebral ischemia-reperfusion.

Journal: The Journal of biological chemistry

Authors' code: YuLab-SMU/enrichplot (no license)

Status: code verified, 58 files readable

[26118] doi:10.1021/acsomega.4c02991 [paper, data]

MicroRNA-Dependent Mechanisms Underlying the Function of a β-Amino Carbonyl Compound in Glioblastoma Cells.

Journal: ACS omega

Status: data only, 1 dataset cited

[26119] doi:10.1038/s41467-024-49600-7 [paper, repository]

Beta activity in human anterior cingulate cortex mediates reward biases.

Journal: Nature communications

Authors' code: OSF t3usq (no license)

Status: code found, still to be checked

[26120] doi:10.1038/s41467-024-49848-z [paper, repository]

Genomic and single-cell analyses reveal genetic signatures of swimming pattern and diapause strategy in jellyfish.

Journal: Nature communications

Authors' code: Changhao051/Turritopsis-rubra (no license)

Status: code verified, 5 files readable, 2 matches

[26121] doi:10.1038/s41467-024-50305-0 [paper, repository]

Investigating grey matter volumetric trajectories through the lifespan at the individual level.

Journal: Nature communications

Authors' code: abnmsry/Life-course-investigation-of-structural-neurodevelopment-at-the-individual-level (no license), Zenodo 10782367 (CC-BY-4.0)

Status: code verified, 10 files readable, 4 matches

[26122] doi:10.1038/s41531-024-00740-z [paper, repository]

DBScope as a versatile computational toolbox for the visualization and analysis of sensing data from deep brain stimulation.

Journal: NPJ Parkinson's disease

Authors' code: NCN-Lab/DBScope (GPL-3.0)

Status: code verified, 93 files readable, 1 match

[26123] doi:10.1038/s41593-024-01697-1 [paper, repository]

Unlocking opioid neuropeptide dynamics with genetically encoded biosensors.

Journal: Nature neuroscience

Authors' code: lintianlab/opioidsensors (no license)

Status: code verified, 66 files readable

[26124] doi:10.1038/s41598-024-67111-9 [paper, repository]

The neural representation of stereotype content.

Journal: Scientific reports

Authors' code: OSF umg3k (no license)

Status: empty repository

[26125] doi:10.1038/s41598-024-67130-6 [paper, repository]

Efficient segmentation of active and inactive plaques in FLAIR-images using DeepLabV3Plus SE with efficientnetb0 backbone in multiple sclerosis.

Journal: Scientific reports

Authors' code: hosseinazimi0213120/DeepLab-V3Plus-SE-EfficientNetB0 (no license)

Status: code verified, 1 file readable, 1 match

[26126] doi:10.1038/s42256-024-00864-0 [paper, repository]

Realistic morphology-preserving generative modelling of the brain.

Journal: Nature machine intelligence

Authors' code: AmigoLab/BrainSynth (no license), Zenodo 11583061 (CC-BY-4.0)

Status: code verified, 55 files readable, 6 matches

[26127] doi:10.1038/s44318-024-00148-8 [paper]

Targeting neuronal epigenomes for brain rejuvenation.

Journal: The EMBO journal

Status: data only

[26128] doi:10.1038/s44318-024-00165-7 [paper, data]

Structural insights into the molecular effects of the anthelmintics monepantel and betaine on the Caenorhabditis elegans acetylcholine receptor ACR-23.

Journal: The EMBO journal

Status: data only, 2 datasets cited

[26129] doi:10.1038/s44321-024-00103-4 [paper]

In vitro and in vivo inhibition of the host TRPC4 channel attenuates Zika virus infection.

Journal: EMBO molecular medicine

Status: data only

[26130] doi:10.1073/pnas.2317653121 [paper, data]

Actions chains and intention understanding in 3- to 6-year-old children.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26131] doi:10.1073/pnas.2320378121 [paper, data]

Dissonant music engages early visual processing.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[26132] doi:10.1098/rstb.2023.0248 [paper, repository]

Confrontation with others' emotions changes bodily resonance differently in those with low and high levels of depersonalization.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7308148 (no license)

Status: code found, still to be checked

[26133] doi:10.1098/rstb.2023.0249 [paper, repository]

Primary somatosensory cortical processing in tactile communication.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7274579 (no license)

Status: code found, still to be checked

[26134] doi:10.1111/cpr.13710 [paper, data]

Compromised cell competition exhausts neural stem cells pool.

Journal: Cell proliferation

Status: data only, 1 dataset cited

[26135] doi:10.1162/imag_a_00226 [paper, repository]

Dynamic network analysis of electrophysiological task data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OHBA-analysis/Gohil2024_NetworkAnalysisOfTaskData (no license)

Status: code verified, 28 files readable, 1 match

[26136] doi:10.1162/imag_a_00227 [paper, repository]

Functional magnetic resonance imaging of the lumbosacral cord during a lower extremity motor task.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: NeuroimagingBalgrist/LumbosacralfMRI (no license)

Status: code verified, 20 files readable, 2 matches

[26137] doi:10.1162/imag_a_00228 [paper, repository]

A benchmark of individual auto-regressive models in a massive fMRI dataset.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: FrancoisPgm/fmri-autoreg (MIT)

Status: code verified, 23 files readable, 3 matches

[26138] doi:10.1162/imag_a_00232 [paper, repository]

Age-related changes in individuals with and without reading disability: Behavioral and fMRI evidence.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: yanfeifei2008/Developmental_features_in_RD (no license)

Status: code verified, 4 files readable, 2 matches

[26139] doi:10.1172/jci168982 [paper, repository]

Multiscale modeling uncovers 7q11.23 copy number variation-dependent changes in ribosomal biogenesis and neuronal maturation and excitability.

Journal: The Journal of clinical investigation

Authors' code: plger/7q11ngn2 (no license)

Status: code verified, 27 files readable, 11 matches

[26140] doi:10.1186/s13293-024-00628-w [paper]

Sex-specific role of high-fat diet and stress on behavior, energy metabolism, and the ventromedial hypothalamus.

Journal: Biology of sex differences

Status: code on request

[26141] doi:10.1371/journal.pbio.3002721 [paper, data]

Goal-directed attention transforms both working and long-term memory representations in the human parietal cortex.

Journal: PLoS biology

Status: data only, 1 dataset cited

[26142] doi:10.1371/journal.pone.0305358 [paper, data]

6-shogaol against 3-Nitropropionic acid-induced Huntington's disease in rodents: Based on molecular docking/targeting pro-inflammatory cytokines/NF-κB-BDNF-Nrf2 pathway.

Journal: PloS one

Status: data only, 1 dataset cited

[26143] doi:10.3389/fgene.2024.1417584 [paper, data]

Exome sequencing confirms the clinical diagnosis of both joubert syndrome and klinefelter syndrome with keratoconus in a han Chinese family.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[26144] doi:10.3389/fmicb.2024.1404312 [paper, data]

Impact of age and sex on neuroinflammation following SARS-CoV-2 infection in a murine model.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[26145] doi:10.3389/fncom.2024.1342985 [paper, data]

Rényi entropy-complexity causality space: a novel neurocomputational tool for detecting scale-free features in EEG/iEEG data.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[26146] doi:10.3389/fphys.2024.1342572 [paper, data]

A novel approach to brain tumor detection using K-Means++, SGLDM, ResNet50, and synthetic data augmentation.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[26147] doi:10.7554/elife.88838 [paper, repository]

Emotional vocalizations alter behaviors and neurochemical release into the amygdala.

Journal: eLife

Authors' code: GavazziDA/Wenstrup_Lab_Ghasemahmad_2023 (no license)

Status: code verified, 2 files readable

Sunday, 14 July 2024 (6 papers)

[26148] doi:10.1007/s00018-024-05312-1 [paper, data]

A versatile functional interaction between electrically silent K_V subunits and K_V7 potassium channels.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[26149] doi:10.1016/j.bbadis.2024.167344 [paper, data]

Thyroid hormone T4 mitigates traumatic brain injury in mice by dynamically remodeling cell type specific genes, pathways, and networks in hippocampus and frontal cortex.

Journal: Biochimica et biophysica acta. Molecular basis of disease

Status: data only, 1 dataset cited

[26150] doi:10.1016/j.heliyon.2024.e34526 [paper, repository]

Multi-omics reveals the impact of cancer-associated fibroblasts on the prognosis and treatment response of adult diffuse highest-grade gliomas.

Journal: Heliyon

Authors' code: jianguoyun.com/p/dyimwrwqyixodbiun8qfiaa (no license)

Status: code verified

[26151] doi:10.1038/s41537-024-00482-0 [paper, repository]

Multivariate associations between neuroanatomy and cognition in unmedicated and medicated individuals with schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: AmirhosseinModabbernia/IMAGEN (no license)

Status: empty repository

[26152] doi:10.3390/cancers16142536 [paper, data]

Early 2-Factor Transcription Factors Associated with Progression and Recurrence in Bevacizumab-Responsive Subtypes of Glioblastoma.

Journal: Cancers

Status: data only, 1 dataset cited

[26153] doi:10.7759/cureus.64506 [paper]

Comprehensive Analysis Reveals Epithelial Growth Factor Receptor as a Potential Diagnostic Biomarker in Glioblastoma Multiforme.

Journal: Cureus

Status: data only

Saturday, 13 July 2024 (8 papers)

[26154] doi:10.1007/s10334-024-01183-6 [paper, repository]

Signal drift in diffusion MRI of the brain: effects on intravoxel incoherent motion parameter estimates.

Journal: Magma (New York, N.Y.)

Authors' code: oscarjalnefjord/ivim (BSD-3-Clause), oscarjalnefjord/publications (BSD-3-Clause)

Status: code verified, 67 files readable, 13 matches

[26155] doi:10.1016/j.celrep.2024.114504 [paper]

Astroglial networks control visual responses of superior collicular neurons and sensory-motor behavior.

Journal: Cell reports

Status: code on request

[26156] doi:10.1016/j.ebiom.2024.105235 [paper, data]

Effect of ultrasound-mediated blood-spinal cord barrier opening on survival and motor function in females in an amyotrophic lateral sclerosis mouse model.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[26157] doi:10.1038/s41380-024-02663-w [paper, data]

A bipolar disorder-associated missense variant alters adenylyl cyclase 2 activity and promotes mania-like behavior.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[26158] doi:10.1038/s41467-024-50039-z [paper, repository]

Co-coding of head and whisker movements by both VPM and POm thalamic neurons.

Journal: Nature communications

Authors' code: Zenodo 12508611 (CC-BY-4.0)

Status: code verified, 201 files readable, 10 matches

[26159] doi:10.1038/s41467-024-50212-4 [paper, data]

An extended interaction site determines binding between AP180 and AP2 in clathrin mediated endocytosis.

Journal: Nature communications

Status: data only, 2 datasets cited

[26160] doi:10.1038/s41467-024-50218-y [paper, repository]

Kdm4a is an activity downregulated barrier to generate engrams for memory separation.

Journal: Nature communications

Authors' code: Zenodo 11523126 (CC-BY-4.0)

Status: code verified, 1 file readable

[26161] doi:10.1093/braincomms/fcae237 [paper, repository]

Generative whole-brain dynamics models from healthy subjects predict functional alterations in stroke at the level of individual patients.

Journal: Brain communications

Authors' code: SebastianIdesis/Predictive_model-2023- (no license)

Status: code verified, 13 files readable, 2 matches

Friday, 12 July 2024 (30 papers)

[26162] doi:10.1002/alz.14110 [paper, repository]

Neurochemical organization of cortical proteinopathy and neurophysiology along the Alzheimer's disease continuum.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: villeneuvelab/vlpp (MIT), netneurolab/neuromaps (CC-BY-NC-SA-4.0)

Status: code verified, 87 files readable, 1 match

[26163] doi:10.1007/s00234-024-03427-7 [paper, repository]

Automated classification of brain MRI reports using fine-tuned large language models.

Journal: Neuroradiology

Authors' code: huggingface.co/cl-tohoku/bert-base-japanese (CC-BY-4.0)

Status: empty repository, 1 file readable

[26164] doi:10.1007/s11357-024-01272-3 [paper]

Boosting working memory in the elderly: driving prefrontal theta-gamma coupling via repeated neuromodulation.

Journal: GeroScience

Status: code on request

[26165] doi:10.1021/acs.jmedchem.4c00835 [paper, data]

Ligand-Directed Labeling of the Adenosine A&lt;sub&gt;1&lt;/sub&gt; Receptor in Living Cells.

Journal: Journal of medicinal chemistry

Status: data only, 1 dataset cited

[26166] doi:10.1038/s41467-024-49900-y [paper, repository]

Pulsatile electrical stimulation creates predictable, correctable disruptions in neural firing.

Journal: Nature communications

Authors' code: CSteinhardt153/pulsatile-prediction-code (no license)

Status: code verified, 43 files readable, 3 matches

[26167] doi:10.1038/s41467-024-49989-1 [paper, data]

Adeno-associated virus delivered CXCL9 sensitizes glioblastoma to anti-PD-1 immune checkpoint blockade.

Journal: Nature communications

Status: data only, 1 dataset cited

[26168] doi:10.1038/s41467-024-50205-3 [paper, repository]

Learning to express reward prediction error-like dopaminergic activity requires plastic representations of time.

Journal: Nature communications

Authors' code: ianconehed/FLEX (no license), Zenodo 11260815 (CC-BY-4.0)

Status: code verified, 70 files readable, 3 matches

[26169] doi:10.1038/s41467-024-50248-6 [paper, repository]

A multi-modal, asymmetric, weighted, and signed description of anatomical connectivity.

Journal: Nature communications

Authors' code: JacobColbyTanner/asymmetric_weighted_and_signed_connectome-main (MIT), Zenodo 11036029 (CC-BY-4.0)

Status: code verified, 36 files readable, 13 matches

[26170] doi:10.1038/s41467-024-50273-5 [paper, repository]

Nucleation phenomena and extreme vulnerability of spatial k-core systems.

Journal: Nature communications

Authors' code: LeyangXue/SpatialKcorePercolation (MIT), Zenodo 11624248 (CC-BY-4.0)

Status: code verified, 35 files readable, 2 matches

[26171] doi:10.1038/s41592-024-02318-2 [paper, repository]

Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics.

Journal: Nature methods

Authors' code: moseq4all.org (no license), calebweinreb/multicamera_acquisition (MIT), stefanopini/simple-HRNet (GPL-3.0), calebweinreb/multicam-calibration (no license), keypoint-moseq.readthedocs.io (no license), bermanlabemory/motionmapperpy (CC-BY-NC-SA-4.0), jbohnslav/deepethogram (other), dattalab/keypoint-moseq (other), dattalab/jax-moseq (other), Zenodo 10524840 (CC-BY-4.0), Zenodo 10403244 (CC-BY-4.0)

Status: code verified, 341 files readable, 14 matches

[26172] doi:10.1038/s41597-024-03485-9 [paper, repository]

Genetic and multi-omic resources for Alzheimer disease and related dementia from the Knight Alzheimer Disease Research Center.

Journal: Scientific data

Authors' code: NeuroGenomicsAndInformatics (no license), NeuroGenomicsAndInformatics/WXS-Pipelines (no license), NeuroGenomicsAndInformatics/RNAseq_pipeline (no license), Ibanez-Lab/PlasmaCellFreeRNA-AlzhiemerDisease (no license), Ibanez-Lab (no license)

Status: code verified, 241 files readable, 8 matches

[26173] doi:10.1038/s41597-024-03604-6 [paper]

Small non-coding RNA transcriptomic profiling in adult and fetal human brain.

Journal: Scientific data

Status: data only

[26174] doi:10.1038/s42003-024-06533-7 [paper, repository]

Distinct dynamic connectivity profiles promote enhanced conscious perception of auditory stimuli.

Journal: Communications biology

Authors' code: OSF fc29k (no license)

Status: code verified, 5 files readable, 1 match

[26175] doi:10.1038/s42003-024-06540-8 [paper, repository]

Astrocytes enhance plasticity response during reversal learning.

Journal: Communications biology

Authors' code: CompNeuroTchuGroup/TheDserineHypothesis (MIT), verzep.github.io/r-bcm.html (no license), Zenodo 115658701 (no license)

Status: code verified, 9 files readable

[26176] doi:10.1038/s42003-024-06545-3 [paper, repository]

Erroneous predictive coding across brain hierarchies in a non-human primate model of autism spectrum disorder.

Journal: Communications biology

Authors' code: Zenodo 7084568 (CC-BY-4.0)

Status: code verified, 1 file readable

[26177] doi:10.1038/s42003-024-06551-5 [paper, repository]

Heritability of functional gradients in the human subcortico-cortical connectivity.

Journal: Communications biology

Authors' code: DCAN-Labs/dcan_bold_processing (BSD-3-Clause), Zenodo 2587210 (other-open), BIT-YangLab/Subcortical_Heritability (no license), tbates/umx (no license), wd-veloce/plot_fig_subcortex (GPL-2.0), cjlin1/libsvm (BSD-2-Clause), dcan-labs/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 410 files readable, 10 matches

[26178] doi:10.1073/pnas.2401420121 [paper, data]

Antigen-specific age-related memory CD8 T cells induce and track Alzheimer's-like neurodegeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26179] doi:10.1093/pnasnexus/pgae280 [paper, data]

The cochlear hook region detects harmonics beyond the canonical hearing range.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[26180] doi:10.1126/sciadv.adg1421 [paper, repository]

Sex-biasing influence of autism-associated &lt;i&gt;Ube3a&lt;/i&gt; gene overdosage at connectomic, behavioral, and transcriptomic levels.

Journal: Science advances

Authors' code: Zenodo 10218169 (CC-BY-4.0), functional-neuroimaging/rsfMRI-preprocessing (no license), Zenodo 10218258 (CC-BY-4.0), functional-neuroimaging/rsfMRI-global-local-connectivity (no license), Zenodo 10218158 (CC-BY-4.0), functional-neuroimaging/rsfMRI-seed-based-mapping (no license), Zenodo 10218161 (CC-BY-4.0), IIT-LAND/ube3a_rnaseq (GPL-3.0), cmontani/functional-neuroimaging_rsfmri-seed-based-mapping (no license), cmontani/iit-land_ube3a_rnaseq (GPL-3.0), cmontani/functional-neuroimaging-rsfmri-preprocessing (no license), cmontani/functional-neuroimaging__rsfmri-global-local-connectivity (no license)

Status: code verified, 81 files readable, 9 matches

[26181] doi:10.1126/sciadv.adn4202 [paper, repository]

Functional brain networks are associated with both sex and gender in children.

Journal: Science advances

Authors' code: Zenodo 10779163 (CC-BY-4.0), elvisha/sg_predictions (MIT)

Status: code verified, 8 files readable, 4 matches

[26182] doi:10.1162/imag_a_00223 [paper, repository]

Frequency tagging of spatial attention using periliminal flickers.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sladouce/periliminal-SSVEP (no license)

Status: code verified, 8 files readable, 4 matches

[26183] doi:10.1186/s10020-024-00863-2 [paper, repository]

RNA editing regulates glutamatergic synapses in the frontal cortex of a molecular subtype of Amyotrophic Lateral Sclerosis.

Journal: Molecular medicine (Cambridge, Mass.)

Authors' code: Dafoulab/ALS_RNA_Editing_Project (no license)

Status: dead link

[26184] doi:10.1242/dev.202435 [paper, data]

Evolutionary conservation of VSX2 super-enhancer modules in retinal development.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[26185] doi:10.3389/fninf.2024.1387400 [paper, repository]

Dynamic topological data analysis: a novel fractal dimension-based testing framework with application to brain signals.

Journal: Frontiers in neuroinformatics

Authors' code: A-EL-YAAGOUBI/Dynamic-TDA (no license)

Status: code verified, 3 files readable

[26186] doi:10.3389/fnins.2024.1378844 [paper]

Microbiome-gut-brain axis contributes to patients and Bama miniature pigs with acute large ischemic stroke.

Journal: Frontiers in neuroscience

Status: data only

[26187] doi:10.3390/brainsci14070696 [paper, data]

Neurophysiological Oscillatory Mechanisms Underlying the Effect of Mirror Visual Feedback-Induced Illusion of Hand Movements on Nociception and Cortical Activation.

Journal: Brain sciences

Status: data only, 1 dataset cited

[26188] doi:10.3390/brainsci14070700 [paper, data]

The Clinical Impact of Real-Time fMRI Neurofeedback on Emotion Regulation: A Systematic Review.

Journal: Brain sciences

Status: data only, 1 dataset cited

[26189] doi:10.3390/genes15070913 [paper, repository]

Exploring the Influence of <i>Fok1</i>/<i>Apa1</i> Polymorphic Variants on Adolescent Mental Health and Response to Vitamin D Supplementation in Embryonic Hippocampal Cell Lines.

Journal: Genes

Authors' code: qupath/qupath (GPL-3.0)

Status: code verified, 1,033 files readable

[26190] doi:10.3390/ijms25147649 [paper, repository]

A Comparative Analysis of Two Automated Quantification Methods for Regional Cerebral Amyloid Retention: PET-Only and PET-and-MRI-Based Methods.

Journal: International journal of molecular sciences

Authors' code: yandexdataschool/roc_comparison (MIT)

Status: code verified, 5 files readable, 1 match

[26191] doi:10.3390/tomography10070082 [paper, data]

Connectivity Reveals the Relationships between Human Brain Areas Associated with High-Level Linguistic Processing and Macaque Brain Areas.

Journal: Tomography (Ann Arbor, Mich.)

Status: data only, 1 dataset cited

Thursday, 11 July 2024 (26 papers, 17 on this page)

[26192] doi:10.1002/adhm.202400522 [paper, data]

Amniotic Membrane-Derived Multichannel Hydrogels for Neural Tissue Repair.

Journal: Advanced healthcare materials

Status: data only, 1 dataset cited

[26193] doi:10.1016/j.cell.2024.06.022 [paper]

Molecular and cellular mechanisms of teneurin signaling in synaptic partner matching.

Journal: Cell

Status: code on request

[26194] doi:10.1016/j.isci.2024.110488 [paper]

Parallel signatures of cognitive maturation in primate antisaccade performance and prefrontal activity.

Journal: iScience

Status: code on request

[26195] doi:10.1016/j.mcpro.2024.100811 [paper, repository]

Enhanced In Situ Spatial Proteomics by Effective Combination of MALDI Imaging and LC-MS/MS.

Journal: Molecular & cellular proteomics : MCP

Authors' code: wasimaftab/ImShot (no license)

Status: code verified, 39 files readable, 3 matches

[26196] doi:10.1016/j.mex.2024.102861 [paper, repository]

Estimation of human body 3D pose for parent-infant interaction settings using azure Kinect and OpenPose.

Journal: MethodsX

Authors' code: fdiazro01/KinOP (GPL-3.0), microsoft/Azure-Kinect-Sensor-SDK (MIT), CMU-Perceptual-Computing-Lab/openpose (BSD-2-Clause)

Status: code verified, 509 files readable, 4 matches

[26197] doi:10.1038/s41467-024-49297-8 [paper, data]

GolpHCat (TMEM87A), a unique voltage-dependent cation channel in Golgi apparatus, contributes to Golgi-pH maintenance and hippocampus-dependent memory.

Journal: Nature communications

Status: data only, 1 dataset cited

[26198] doi:10.1038/s41467-024-50264-6 [paper]

3D printable and biocompatible PEDOT:PSS-ionic liquid colloids with high conductivity for rapid on-demand fabrication of 3D bioelectronics.

Journal: Nature communications

Status: code on request

[26199] doi:10.1038/s41586-024-07773-7 [paper, repository]

De novo variants in the RNU4-2 snRNA cause a frequent neurodevelopmental syndrome.

Journal: Nature

Authors' code: francois-lecoquierre/genomics_shortcuts (no license), Computational-Rare-Disease-Genomics-WHG/RNU4-2 (no license)

Status: code verified, 18 files readable, 4 matches

[26200] doi:10.1038/s41598-024-66797-1 [paper, data]

Morphological classification of neurons based on Sugeno fuzzy integration and multi-classifier fusion.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26201] doi:10.1073/pnas.2316765121 [paper, data]

Orthogonality of sensory and contextual categorical dynamics embedded in a continuum of responses from the second somatosensory cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request, 1 dataset cited

[26202] doi:10.1073/pnas.2320769121 [paper, repository]

Cell-intrinsic mechanical regulation of plasma membrane accumulation at the cytokinetic furrow.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: alicerlam/lam-miettinen-cell-membrane-intensity (no license), robonsuva8/Code_cytokinesis (no license)

Status: code verified, 10 files readable

[26203] doi:10.1093/braincomms/fcae199 [paper, repository]

Atypical intrinsic neural timescale in the left angular gyrus in Alzheimer's disease.

Journal: Brain communications

Authors' code: takamitsuwatanabe/IntrinsicNeuralTimescale (MIT)

Status: code verified, 3 files readable

[26204] doi:10.1093/braincomms/fcae229 [paper, repository]

Longitudinal changes in sodium concentration and in clinical outcome in mild traumatic brain injury.

Journal: Brain communications

Authors' code: Zenodo 10996401 (CC-BY-4.0), Zenodo 10996400 (CC-BY-4.0)

Status: code verified, 4 files readable, 2 matches

[26205] doi:10.1093/evlett/qrae032 [paper, repository]

Goldfish phenomics reveals commonalities and a lack of universality in the domestication process for ornamentation.

Journal: Evolution letters

Authors' code: Zenodo 10403067 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[26206] doi:10.1109/ojemb.2024.3425855 [paper, data]

Effect of Preadolescents' Obesity on Inhibitory Control During Stop-Signal Task: A Functional EEG Network Study.

Journal: IEEE open journal of engineering in medicine and biology

Status: data only, 1 dataset cited

[26207] doi:10.1186/s12929-024-01061-2 [paper, data]

CPEB2-activated axonal translation of VGLUT2 mRNA promotes glutamatergic transmission and presynaptic plasticity.

Journal: Journal of biomedical science

Status: data only, 1 dataset cited

[26208] doi:10.1371/journal.pcbi.1011642 [paper, repository]

Parameter estimation in a whole-brain network model of epilepsy: Comparison of parallel global optimization solvers.

Journal: PLoS computational biology

Authors' code: Zenodo 10057788 (CC-BY-4.0), ins-amu/bvep (GPL-3.0)

Status: code verified, 1,527 files readable, 4 matches

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