Every paper, by date: page 118

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 118 of 200: 11 July 2024 to 2 July 2024.

Thursday, 11 July 2024 (26 papers, 9 on this page)

[26209] doi:10.1371/journal.pone.0303573 [paper, repository]

Fibromyalgia pathogenesis explained by a neuroendocrine multistable model.

Journal: PloS one

Authors' code: Zenodo 11445716 (CC-BY-4.0)

Status: code verified, 3 files readable, 6 matches

[26210] doi:10.1371/journal.pone.0304572 [paper, data]

Memory systems modulate crosslinguistic influence on third language morphosyntactic acquisition.

Journal: PloS one

Status: data only, 1 dataset cited

[26211] doi:10.1371/journal.pone.0306966 [paper, data]

Effects of head alignment devices on working memory and postural support during computer work.

Journal: PloS one

Status: data only, 1 dataset cited

[26212] doi:10.3389/fams.2024.1403901 [paper, data]

Analysis of community connectivity in spatial transcriptomics data.

Journal: Frontiers in applied mathematics and statistics

Status: data only, 1 dataset cited

[26213] doi:10.3389/fmolb.2024.1396587 [paper, repository]

RNAi-dependent expression of sperm genes in ADL chemosensory neurons is required for olfactory responses in <i>Caenorhabditis elegans</i>.

Journal: Frontiers in molecular biosciences

Authors' code: mnishiguchi7/hall_lab (no license)

Status: empty repository

[26214] doi:10.3389/fpsyg.2024.1424242 [paper, data]

Commit to your putting stroke: exploring the impact of quiet eye duration and neural activity on golf putting performance.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[26215] doi:10.3390/e26070593 [paper, repository]

NodeFlow: Towards End-to-End Flexible Probabilistic Regression on Tabular Data.

Journal: Entropy (Basel, Switzerland)

Authors' code: pfilo8/NodeFlow (no license)

Status: code verified, 82 files readable, 5 matches

[26216] doi:10.7554/elife.93498 [paper, repository]

Clustered synapses develop in distinct dendritic domains in visual cortex before eye opening.

Journal: eLife

Authors' code: figshare 22674748 (CC-BY-4.0)

Status: code verified, 37 files readable, 7 matches

[26217] doi:10.7554/elife.96281 [paper, data]

Chronic activation of a negative engram induces behavioral and cellular abnormalities.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 10 July 2024 (46 papers)

[26218] doi:10.1002/advs.202400586 [paper, data]

Neural Tissue-Like, not Supraphysiological, Electrical Conductivity Stimulates Neuronal Lineage Specification through Calcium Signaling and Epigenetic Modification.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[26219] doi:10.1016/j.heliyon.2024.e34474 [paper, data]

Identification of a prognosis-related phagocytosis regulator gene signature in medulloblastoma.

Journal: Heliyon

Status: data only, 1 dataset cited

[26220] doi:10.1016/j.xgen.2024.100606 [paper, repository]

Cell-type-specific loops linked to RNA polymerase II elongation in human neural differentiation.

Journal: Cell genomics

Authors' code: arq5x/bedtools2 (MIT), nservant/HiC-Pro (BSD-3-Clause), bzhanglab/WebGestaltR (no license), creminslab/hic3defdr (MIT), deeptools/pyBigWig (MIT), ay-lab/mustache (MIT), open2c/cooler (BSD-3-Clause), Zenodo 11106963 (CC-BY-4.0), creminslab/cremins_lab_loop_calling_pipeline_11_6_2021 (no license)

Status: code verified, 742 files readable, 9 matches

[26221] doi:10.1038/s41467-024-49570-w [paper, repository]

Multiscale chemogenetic dissection of fronto-temporal top-down regulation for object memory in primates.

Journal: Nature communications

Authors' code: CAToshiyuki/DMS-2024 (no license)

Status: code verified, 7 files readable, 1 match

[26222] doi:10.1038/s41467-024-49595-1 [paper, repository]

Immuno-oncologic profiling of pediatric brain tumors reveals major clinical significance of the tumor immune microenvironment.

Journal: Nature communications

Authors' code: AlexsLemonade/OpenPBTA-analysis (CC-BY-4.0), adrianblevine/Immuno-oncology_nanostring (GPL-3.0), Zenodo 10739152 (CC-BY-4.0)

Status: code verified, 338 files readable, 18 matches

[26223] doi:10.1038/s41467-024-49790-0 [paper, repository]

Single cell transcriptomes and multiscale networks from persons with and without Alzheimer's disease.

Journal: Nature communications

Authors' code: qwang178/Banner_snRNAseq_SFG (no license), Zenodo 11154082 (CC-BY-4.0)

Status: code verified, 92 files readable, 12 matches

[26224] doi:10.1038/s41467-024-49996-2 [paper, data]

Hypothalamic hormone deficiency enables physiological anorexia in ground squirrels during hibernation.

Journal: Nature communications

Status: data only, 1 dataset cited

[26225] doi:10.1038/s41467-024-50042-4 [paper, repository]

Histamine H&lt;sub&gt;1&lt;/sub&gt; receptors in dentate gyrus-projecting cholinergic neurons of the medial septum suppress contextual fear retrieval in mice.

Journal: Nature communications

Authors' code: wellsjay/TrippleColorMultiChannelAnalysisPackage (no license), Zenodo 11363248 (CC-BY-4.0)

Status: code verified, 86 files readable

[26226] doi:10.1038/s41467-024-50055-z [paper, repository]

Long-range inhibition from prelimbic to cingulate areas of the medial prefrontal cortex enhances network activity and response execution.

Journal: Nature communications

Authors' code: Yu-Chao-Liu/HEKAexport (no license), Zenodo 6877792 (other-open), Yu-Chao-Liu/IntrinsicProperties (no license), Zenodo 10700986 (CC-BY-4.0), Yu-Chao-Liu/Intersections (no license), Zenodo 10702432 (CC-BY-4.0), NUtaHei/Utashiro_NatCommun2024 (no license), Zenodo 10710076 (CC-BY-4.0)

Status: code verified, 32 files readable, 2 matches

[26227] doi:10.1038/s41467-024-50111-8 [paper, data]

Regulatory mechanism of cold-inducible diapause in Caenorhabditis elegans.

Journal: Nature communications

Status: data only, 1 dataset cited

[26228] doi:10.1038/s41467-024-50132-3 [paper, repository]

Whole exome sequencing analysis identifies genes for alcohol consumption.

Journal: Nature communications

Authors' code: saigegit/SAIGE (GPL-3.0), astrazeneca-cgr-publications.github.io/gene-scout (no license)

Status: code verified, 58 files readable, 3 matches

[26229] doi:10.1038/s41467-024-50153-y [paper, data]

β-amyloid monomer scavenging by an anticalin protein prevents neuronal hyperactivity in mouse models of Alzheimer's Disease.

Journal: Nature communications

Status: data only, 1 dataset cited

[26230] doi:10.1038/s41467-024-50204-4 [paper, repository]

Developmental trajectories of EEG aperiodic and periodic components in children 2-44 months of age.

Journal: Nature communications

Authors' code: OSF u3gp4 (no license)

Status: code verified, 30 files readable, 14 matches

[26231] doi:10.1038/s41565-024-01711-4 [paper]

Graphene oxide electrodes enable electrical stimulation of distinct calcium signalling in brain astrocytes.

Journal: Nature nanotechnology

Status: code on request

[26232] doi:10.1038/s41586-024-07493-y [paper, repository]

Single-cell atlas of the human brain vasculature across development, adulthood and disease.

Journal: Nature

Authors' code: Waelchli-lab/Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-disease (no license), Zenodo 10065659 (CC-BY-4.0), Zenodo 10066390 (CC-BY-4.0), Zenodo 10066538 (CC-BY-4.0), Zenodo 10066703 (CC-BY-4.0), Zenodo 23293135 (MIT), Zenodo 23293136 (MIT)

Status: code verified, 24 files readable, 18 matches

[26233] doi:10.1038/s41586-024-07608-5 [paper, data]

Brainstem Dbh&lt;sup&gt;+&lt;/sup&gt; neurons control allergen-induced airway hyperreactivity.

Journal: Nature

Status: data only, 1 dataset cited

[26234] doi:10.1038/s41586-024-07634-3 [paper, data]

A maternal brain hormone that builds bone.

Journal: Nature

Status: data only, 1 dataset cited

[26235] doi:10.1038/s41586-024-07680-x [paper, repository]

CryoET of β-amyloid and tau within postmortem Alzheimer's disease brain.

Journal: Nature

Authors' code: jjenkins01/model2helicalpriors (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[26236] doi:10.1038/s41586-024-07684-7 [paper, repository]

Glutamate acts on acid-sensing ion channels to worsen ischaemic brain injury.

Journal: Nature

Authors' code: jerkwin/gmxtools (no license)

Status: code verified, 9 files readable, 3 matches

[26237] doi:10.1038/s41598-024-66364-8 [paper, repository]

Motor inhibition errors and interference suppression errors differ systematically on neural and behavioural features of response monitoring.

Journal: Scientific reports

Authors' code: OSF r4yeq (no license)

Status: code verified, 2 files readable, 1 match

[26238] doi:10.1038/s41598-024-66637-2 [paper, data]

Moderate aerobic training enhances the effectiveness of insulin therapy through hypothalamic IGF1 signaling in rat model of Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26239] doi:10.1038/s42003-024-06524-8 [paper, repository]

LRIG1 controls proliferation of adult neural stem cells by facilitating TGFβ and BMP signalling pathways.

Journal: Communications biology

Authors' code: Yuzwalab (no license)

Status: code verified

[26240] doi:10.1038/s42003-024-06528-4 [paper]

Composite branched and linear F-actin maximize myosin-induced membrane shape changes in a biomimetic cell model.

Journal: Communications biology

Status: code on request

[26241] doi:10.1097/j.pain.0000000000003335 [paper, repository]

Beyond the chronic pain stage: default mode network perturbation depends on years lived with back pain.

Journal: Pain

Authors' code: Zenodo 8340363 (other-open), strohkamp/b03 (MIT)

Status: code verified, 4 files readable, 7 matches

[26242] doi:10.1098/rsob.230355 [paper, repository]

The CoREST complex regulates multiple histone modifications temporal-specifically in clock neurons.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7303161 (no license)

Status: code found, still to be checked

[26243] doi:10.1152/jn.00422.2023 [paper, data]

Differential expression of genes in the RhoA/ROCK pathway in the hippocampus and cortex following intermittent hypoxia and high-intensity interval training.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[26244] doi:10.1159/000539757 [paper, data]

Electrical and Magnetic Neuromodulation Technologies and Brain-Computer Interfaces: Ethical Considerations for Enhancement of Brain Function in Healthy People - A Systematic Scoping Review.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[26245] doi:10.1186/s13059-024-03306-7 [paper, repository]

sciMET-cap: high-throughput single-cell methylation analysis with a reduced sequencing burden.

Journal: Genome biology

Authors' code: adeylab/sciMETv2 (CC-BY-4.0), Zenodo 10703110 (CC-BY-4.0)

Status: code verified, 107 files readable, 3 matches

[26246] doi:10.1242/dev.202575 [paper, repository]

Caenorhabditis elegans germ granules accumulate hundreds of low translation mRNAs with no systematic preference for germ cell fate regulators.

Journal: Development (Cambridge, England)

Authors' code: yliu380/AirLocalize_Data_Process (no license)

Status: code verified, 5 files readable

[26247] doi:10.1371/journal.pbio.3002655 [paper, repository]

A molecularly defined subpopulation of oligodendrocyte precursor cells controls the generation of myelinating oligodendrocytes during postnatal development.

Journal: PLoS biology

Authors' code: Zenodo 11065190 (CC-BY-4.0), Zenodo 11065401 (CC-BY-4.0), orion-cirb/colocgenes2d (no license), orion-cirb/genes_2dcells (no license)

Status: code verified, 54 files readable

[26248] doi:10.1371/journal.pcbi.1012240 [paper, repository]

Jointly efficient encoding and decoding in neural populations.

Journal: PLoS computational biology

Authors' code: simonebmalerba/neural_VAE (MIT)

Status: code verified, 10 files readable, 2 matches

[26249] doi:10.1371/journal.pcbi.1012241 [paper, repository]

PARE: A framework for removal of confounding effects from any distance-based dimension reduction method.

Journal: PLoS computational biology

Authors' code: andy1764/PARE (no license), ntustison/CrossLong (no license)

Status: code verified, 72 files readable, 2 matches

[26250] doi:10.1371/journal.pone.0300462 [paper, data]

Intrinsic functional connectivity mediates the effect of personality traits on depressive symptoms.

Journal: PloS one

Status: data only, 1 dataset cited

[26251] doi:10.1523/eneuro.0162-24.2024 [paper, repository]

Hypothalamic-Pituitary-Adrenal Axis Dysfunction Elevates SUDEP Risk in a Sex-Specific Manner.

Journal: eNeuro

Authors' code: neurosimata/seizy (Apache-2.0)

Status: code verified, 21 files readable, 1 match

[26252] doi:10.3389/fnhum.2024.1421922 [paper, repository]

Harnessing Few-Shot Learning for EEG signal classification: a survey of state-of-the-art techniques and future directions.

Journal: Frontiers in human neuroscience

Authors' code: tczhangzhi/PyTorch-GANSER (no license)

Status: code verified, 58 files readable

[26253] doi:10.3389/fnhum.2024.1431153 [paper, data]

Epilepsy lesion localization method based on brain function network.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[26254] doi:10.3389/fnins.2024.1404009 [paper, data]

Male mice are susceptible to brain dysfunction induced by early-life acephate exposure.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[26255] doi:10.3390/bioengineering11070701 [paper, data]

Integrating Convolutional Neural Networks with Attention Mechanisms for Magnetic Resonance Imaging-Based Classification of Brain Tumors.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 4 datasets cited

[26256] doi:10.3390/brainsci14070690 [paper, data]

Effects of Transcutaneous Auricular Vagus Nerve Stimulation on the P300: Do Stimulation Duration and Stimulation Type Matter?

Journal: Brain sciences

Status: data only, 1 dataset cited

[26257] doi:10.3390/bs14070585 [paper, repository]

Learning to Listen: Changes in Children's Brain Activity Following a Listening Comprehension Intervention.

Journal: Behavioral sciences (Basel, Switzerland)

Authors' code: OSF kwq93 (no license)

Status: empty repository

[26258] doi:10.3390/cells13141176 [paper, repository]

Unravelling the Cerebellar Involvement in Autism Spectrum Disorders: Insights into Genetic Mechanisms and Developmental Pathways.

Journal: Cells

Authors' code: icd.who.int/en (no license)

Status: code verified

[26259] doi:10.3390/ijms25147551 [paper, data]

Identifying Diagnostic Markers and Constructing Predictive Models for Oxidative Stress in Multiple Sclerosis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[26260] doi:10.4103/nrr.nrr-d-23-01233 [paper, data]

Recombinant chitinase-3-like protein 1 alleviates learning and memory impairments via M2 microglia polarization in postoperative cognitive dysfunction mice.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[26261] doi:10.4103/nrr.nrr-d-24-00068 [paper, repository]

Exosomes originating from neural stem cells undergoing necroptosis participate in cellular communication by inducing TSC2 upregulation of recipient cells following spinal cord injury.

Journal: Neural regeneration research

Authors' code: wilkelab/cowplot (no license), nanxstats/ggsci (GPL-3.0), pzhaonet/mindr (GPL-3.0)

Status: code verified, 116 files readable, 3 matches

[26262] doi:10.7554/elife.90634 [paper, repository]

Statistical learning shapes pain perception and prediction independently of external cues.

Journal: eLife

Authors' code: Zenodo 11394627 (CC-BY-4.0)

Status: code verified

[26263] doi:10.7554/elife.92495 [paper, repository]

Multi-day neuron tracking in high-density electrophysiology recordings using earth mover's distance.

Journal: eLife

Authors' code: janelia-TDHarrisLab/Yuan-Neuron_Tracking (no license), jenniferColonell/ecephys_spike_sorting (BSD-2-Clause)

Status: code verified, 170 files readable, 10 matches

Tuesday, 9 July 2024 (32 papers)

[26264] doi:10.1002/advs.202400064 [paper, data]

Microglia Gravitate toward Amyloid Plaques Surrounded by Externalized Phosphatidylserine via TREM2.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[26265] doi:10.1016/j.celrep.2024.114470 [paper, repository]

Retrosplenial inputs drive visual representations in the medial entorhinal cortex.

Journal: Cell reports

Authors' code: cardin-higley-lab/Dubanet_Higley_2024 (no license), michael-zugaro/FMAToolbox (gpl)

Status: code verified, 281 files readable, 4 matches

[26266] doi:10.1016/j.crmeth.2024.100819 [paper, repository]

Fatecode enables cell fate regulator prediction using classification-supervised autoencoder perturbation.

Journal: Cell reports methods

Authors' code: Zenodo 11511340 (CC-BY-4.0), zqfang/GSEApy (BSD-3-Clause), MehrshadSD/Fatecode (no license)

Status: code verified, 48 files readable, 6 matches

[26267] doi:10.1016/j.isci.2024.110379 [paper, data]

CCR3 knockdown attenuates prolonged underwater operations-induced cognitive impairment via alleviating microglia-mediated neuroinflammation.

Journal: iScience

Status: code on request, 1 dataset cited

[26268] doi:10.1021/acsami.4c06512 [paper, repository]

Improved Imaging Surface for Quantitative Single-Molecule Microscopy.

Journal: ACS applied materials & interfaces

Authors' code: YPZ858/DF-single-molecule-couting (no license)

Status: dead link

[26269] doi:10.1038/s41467-024-49073-8 [paper, repository]

Occipital-temporal cortical tuning to semantic and affective features of natural images predicts associated behavioral responses.

Journal: Nature communications

Authors' code: gallantlab.org/voxelwise_tutorials/voxelwise_modeling.html (no license)

Status: dead link

[26270] doi:10.1038/s41467-024-49339-1 [paper, repository]

Structured connectivity in the output of the cerebellar cortex.

Journal: Nature communications

Authors' code: Zenodo 11090249 (CC-BY-4.0), kgruver/StructuredConnectivity (CC0-1.0)

Status: code verified, 24 files readable, 3 matches

[26271] doi:10.1038/s41467-024-49704-0 [paper, repository]

Stimulus type shapes the topology of cellular functional networks in mouse visual cortex.

Journal: Nature communications

Authors' code: HChoiLab/functional-network (BSD-2-Clause)

Status: code verified, 14 files readable, 12 matches

[26272] doi:10.1038/s41467-024-50183-6 [paper, data]

The mouse multi-organ proteome from infancy to adulthood.

Journal: Nature communications

Status: data only, 1 dataset cited

[26273] doi:10.1038/s41467-024-50203-5 [paper, repository]

Context-invariant beliefs are supported by dynamic reconfiguration of single unit functional connectivity in prefrontal cortex of male macaques.

Journal: Nature communications

Authors' code: OSF eybc8 (no license)

Status: code verified, 11 files readable, 2 matches

[26274] doi:10.1038/s41593-024-01668-6 [paper, repository]

Flexible multitask computation in recurrent networks utilizes shared dynamical motifs.

Journal: Nature neuroscience

Authors' code: mattgolub/fixed-point-finder (Apache-2.0), gyyang/multitask (no license), lauradriscoll/flexible_multitask (no license)

Status: code verified, 72 files readable, 2 matches

[26275] doi:10.1038/s41598-024-66158-y [paper, repository]

Shared neural codes of recognition memory.

Journal: Scientific reports

Authors' code: OSF qcr2g (no license)

Status: code verified, 18 files readable, 6 matches

[26276] doi:10.1038/s41598-024-66871-8 [paper, data]

Induction of LTP mechanisms in dually innervated dendritic spines.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26277] doi:10.1038/s41746-024-01175-9 [paper, repository]

Identification of Parkinson's disease PACE subtypes and repurposing treatments through integrative analyses of multimodal data.

Journal: NPJ digital medicine

Authors' code: changsu10/parkinson-progression-subtyping (Apache-2.0)

Status: code verified, 46 files readable, 20 matches

[26278] doi:10.1038/s42003-024-06504-y [paper, repository]

Estimating the total variance explained by whole-brain imaging for zero-inflated outcomes.

Journal: Communications biology

Authors' code: junting-ren/ZIV (no license), Zenodo 11479618 (CC-BY-4.0)

Status: code verified, 32 files readable, 9 matches

[26279] doi:10.1038/s44277-024-00009-6 [paper, data]

Neural correlates of depression-related smartphone language use in adolescents.

Journal: NPP - digital psychiatry and neuroscience

Status: data only, 1 dataset cited

[26280] doi:10.1073/pnas.2307221121 [paper, repository]

Callousness, exploitativeness, and tracking of cooperation incentives in the human default network.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: UNCDEPENdLab/fmri.pipeline (GPL-3.0)

Status: code verified, 214 files readable, 4 matches

[26281] doi:10.1093/braincomms/fcae222 [paper, repository]

Different patterns of structural network impairments in two amyotrophic lateral sclerosis subtypes driven by ¹⁸F-fluorodeoxyglucose positron emission tomography/magnetic resonance hybrid imaging.

Journal: Brain communications

Authors' code: FelixFengCN/ALS-subtype (no license)

Status: code verified, 3 files readable

[26282] doi:10.1093/pnasnexus/pgae270 [paper, repository]

Triadic percolation induces dynamical topological patterns in higher-order networks.

Journal: PNAS nexus

Authors' code: hanlinsun97/spatial-triadic-percolation (GPL-2.0)

Status: code verified, 3 files readable

[26283] doi:10.1101/2024.07.05.602190 [paper, data]

Average miniature post-synaptic potential size is inversely proportional to membrane capacitance across neocortical pyramidal neurons of different sizes

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[26284] doi:10.1172/jci153097 [paper, data]

De novo monoallelic Reelin missense variants cause dominant neuronal migration disorders via a dominant-negative mechanism.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[26285] doi:10.12688/f1000research.145146.2 [paper, repository]

A guide to selecting high-performing antibodies for Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (PPP2R5D) for use in Western Blot, immunoprecipitation and immunofluorescence.

Journal: F1000Research

Authors' code: Zenodo 10108248 (CC-BY-4.0)

Status: empty repository

[26286] doi:10.1371/journal.pcbi.1012261 [paper, repository]

Synaptic reorganization of synchronized neuronal networks with synaptic weight and structural plasticity.

Journal: PLoS computational biology

Authors' code: kanishk-chauhan/SynapticReorganization-LIF-STDP-SP- (MIT)

Status: code verified, 27 files readable, 16 matches

[26287] doi:10.1371/journal.pone.0303633 [paper, data]

A method to estimate prey density from single-camera images: A case study with chinstrap penguins and Antarctic krill.

Journal: PloS one

Status: data only, 1 dataset cited

[26288] doi:10.1371/journal.pone.0306478 [paper, data]

Early attentional processing and cortical remapping strategies of tactile stimuli in adults with an early and late-onset visual impairment: A cross-sectional study.

Journal: PloS one

Status: data only, 1 dataset cited

[26289] doi:10.1523/eneuro.0190-24.2024 [paper, repository]

Persistent Interruption in Parvalbumin-Positive Inhibitory Interneurons: Biophysical and Mathematical Mechanisms.

Journal: eNeuro

Authors' code: modeldb:2016658 (no license)

Status: code verified

[26290] doi:10.2147/dddt.s462333 [paper]

Integrating Network Pharmacology, Transcriptomics to Reveal Neuroprotective of Curcumin Activate PI3K / AKT Pathway in Parkinson's Disease.

Journal: Drug design, development and therapy

Status: data only

[26291] doi:10.3389/ebm.2024.10101 [paper, data]

Identification of potential biomarkers for cerebral palsy and the development of prediction models.

Journal: Experimental biology and medicine (Maywood, N.J.)

Status: data only, 1 dataset cited

[26292] doi:10.3389/fphar.2024.1412725 [paper, repository]

Neural effects of dopaminergic compounds revealed by multi-site electrophysiology and interpretable machine-learning.

Journal: Frontiers in pharmacology

Authors' code: KaetzelLab/DA-Pharmacology-ephys-analysis-2024 (GPL-3.0)

Status: code verified, 11 files readable, 7 matches

[26293] doi:10.3389/fpsyt.2024.1433316 [paper, data]

Effects of gender and age on sleep EEG functional connectivity differences in subjects with mild difficulty falling asleep.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[26294] doi:10.3390/diagnostics14141469 [paper, data]

A Novel Hybrid Machine Learning-Based System Using Deep Learning Techniques and Meta-Heuristic Algorithms for Various Medical Datatypes Classification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[26295] doi:10.7554/elife.96386 [paper, repository]

Selective recruitment of the cerebellum evidenced by task-dependent gating of inputs.

Journal: eLife

Authors' code: DiedrichsenLab/Functional_Fusion (no license), diedrichsenlab/cortico_cereb_connectivity (MIT), diedrichsenlab/selective_recruitment (MIT)

Status: code verified, 169 files readable, 10 matches

Monday, 8 July 2024 (25 papers)

[26296] doi:10.1007/s12021-024-09673-7 [paper, repository]

Generative Modelling of Cortical Receptor Distributions from Cytoarchitectonic Images in the Macaque Brain.

Journal: Neuroinformatics

Authors' code: jugit.fz-juelich.de/a.nebli/gan-for-cyto2receptor-translation (no license)

Status: code verified

[26297] doi:10.1007/s12021-024-09675-5 [paper, repository]

Classifying Neuronal Cell Types Based on Shared Electrophysiological Information from Humans and Mice.

Journal: Neuroinformatics

Authors' code: ofek181/Neuronal-Cell-Type-Classification (no license)

Status: code verified, 40 files readable, 19 matches

[26298] doi:10.1016/j.xgen.2024.100605 [paper, repository]

Crosstalk between epitranscriptomic and epigenomic modifications and its implication in human diseases.

Journal: Cell genomics

Authors' code: Zenodo 11481934 (CC-BY-4.0), xiongxslab/LiC_et_al_MR_crosstalk (no license)

Status: code verified, 56 files readable, 10 matches

[26299] doi:10.1038/s41398-024-03000-z [paper]

Modulation of dlPFC function and decision-making capacity by repetitive transcranial magnetic stimulation in methamphetamine use disorder.

Journal: Translational psychiatry

Status: code on request

[26300] doi:10.1038/s41467-024-49788-8 [paper, data]

Ube3a unsilencer for the potential treatment of Angelman syndrome.

Journal: Nature communications

Status: data only, 1 dataset cited

[26301] doi:10.1038/s41467-024-49906-6 [paper, repository]

Mechanically induced topological transition of spectrin regulates its distribution in the mammalian cell cortex.

Journal: Nature communications

Authors' code: Zenodo 10835918 (CC-BY-4.0), rangamanilabucsd/spectrin-topological-transition (no license)

Status: code verified, 48 files readable, 1 match

[26302] doi:10.1038/s41467-024-50102-9 [paper, repository]

Network mechanisms of ongoing brain activity's influence on conscious visual perception.

Journal: Nature communications

Authors' code: BiyuHeLab/NatCommun_Wu2024 (no license)

Status: code verified, 15 files readable, 15 matches

[26303] doi:10.1038/s41598-024-64099-0 [paper, data]

The features analysis of hemoglobin expression on visual information transmission pathway in early stage of Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26304] doi:10.1038/s41598-024-66314-4 [paper, data]

Enhancing brain tumor segmentation in MRI images using the IC-net algorithm framework.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26305] doi:10.1038/s44318-024-00164-8 [paper, data]

The tyrosine phosphatases LAR and PTPRδ act as receptors of the nidogen-tetanus toxin complex.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[26306] doi:10.1073/pnas.2319829121 [paper, repository]

Clustered protocadherin &lt;i&gt;cis&lt;/i&gt;-interactions are required for combinatorial cell-cell recognition underlying neuronal self-avoidance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Rubinstein-Lab/Mixing-Score (no license), Rubinstein-Lab/cPcdh-simulation (no license)

Status: code verified, 11 files readable

[26307] doi:10.1073/pnas.2321408121 [paper, data]

Mutant androgen receptor induces neurite loss and senescence independently of ARE binding in a neuronal model of SBMA.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26308] doi:10.1073/pnas.2322864121 [paper, data]

A wound-induced differentiation trajectory for neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26309] doi:10.1093/braincomms/fcae231 [paper, repository]

Excitation/Inhibition balance relates to cognitive function and gene expression in temporal lobe epilepsy: a high density EEG assessment with aperiodic exponent.

Journal: Brain communications

Authors' code: simone-cuozzo/FOOOF_epilepsy (no license)

Status: code verified, 6 files readable, 8 matches

[26310] doi:10.1162/imag_a_00201 [paper, repository]

Developmental trajectories of the default mode, frontoparietal, and salience networks from the third trimester through the newborn period.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: bioimagesuiteweb.github.io/webapp (no license)

Status: code verified

[26311] doi:10.1162/imag_a_00210 [paper, repository]

Brain age revisited: Investigating the state vs. trait hypotheses of EEG-derived brain-age dynamics with deep learning.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: gemeinl/eeg-brain-age (no license), skorch-dev/skorch (BSD-3-Clause)

Status: code verified, 106 files readable, 7 matches

[26312] doi:10.1186/s13059-024-03317-4 [paper, repository]

Detection of allele-specific expression in spatial transcriptomics with spASE.

Journal: Genome biology

Authors' code: MacoskoLab/slideseq-tools (no license), lulizou/spase (MIT), Zenodo 11239156 (CC-BY-4.0)

Status: code verified, 134 files readable, 12 matches

[26313] doi:10.1523/eneuro.0001-24.2024 [paper, repository]

Synchronous Measurements of Extracellular Action Potentials and Neurochemical Activity with Carbon Fiber Electrodes in Nonhuman Primates.

Journal: eNeuro

Authors' code: Zenodo 10955584 (CC-BY-4.0), Zenodo 10955525 (CC-BY-4.0), Zenodo 10396372 (CC-BY-4.0), Zenodo 10955583 (CC-BY-4.0), Zenodo 10397773 (CC-BY-4.0), schwerdtlab/fscvartifactcreation (no license), schwerdtlab/extractfscvspikes (no license)

Status: code verified, 114 files readable, 4 matches

[26314] doi:10.1523/eneuro.0007-24.2024 [paper]

Trauma in Neonatal Acute Brain Slices Alters Calcium and Network Dynamics and Causes Calpain-Mediated Cell Death.

Journal: eNeuro

Status: code on request

[26315] doi:10.3390/biom14070809 [paper, data]

DNA Base Damage Repair Crosstalks with Chromatin Structures to Contract Expanded GAA Repeats in Friedreich's Ataxia.

Journal: Biomolecules

Status: data only, 1 dataset cited

[26316] doi:10.3390/brainsci14070683 [paper, data]

Intermittent Theta Burst Stimulation Combined with Cognitive Training to Improve Negative Symptoms and Cognitive Impairment in Schizophrenia: A Pilot Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

[26317] doi:10.3390/brainsci14070685 [paper, data]

Disrupted Brain Network Measures in Parkinson's Disease Patients with Severe Hyposmia and Cognitively Normal Ability.

Journal: Brain sciences

Status: data only, 1 dataset cited

[26318] doi:10.3758/s13414-024-02917-3 [paper, repository]

Combining EEG and eye-tracking in virtual reality: Obtaining fixation-onset event-related potentials and event-related spectral perturbations.

Journal: Attention, perception & psychophysics

Authors' code: debnolte/Combining-EEG-and-Eye-Tracking-in-Virtual-Reality---Obtaining-Fixation-Onset-ERPs-and-ERSPs (MIT), mvidaldp/lsl_latency_analysis (MIT)

Status: code verified, 18 files readable, 24 matches

[26319] doi:10.7554/elife.90318 [paper, repository]

EEG-fMRI in awake rat and whole-brain simulations show decreased brain responsiveness to sensory stimulations during absence seizures.

Journal: eLife

Authors' code: mjnissi/aedes (GPL-2.0), Zenodo 8104455 (CC-BY-4.0)

Status: code verified, 108 files readable

[26320] doi:10.7554/elife.93052 [paper, repository]

Sex-specific resilience of neocortex to food restriction.

Journal: eLife

Authors' code: Zenodo 5561795 (other-open), rochefort-lab/Padamsey-et-al-Neuron-2022 (no license), rochefort-lab/padamsey-et-al-neuron-2021 (no license)

Status: code verified, 162 files readable, 2 matches

Sunday, 7 July 2024 (5 papers)

[26321] doi:10.1038/s41467-024-49616-z [paper, repository]

Diversity of visual inputs to Kenyon cells of the Drosophila mushroom body.

Journal: Nature communications

Authors' code: ishanigan/visual-inputs-to-mushroom-body (no license)

Status: code verified, 18 files readable, 15 matches

[26322] doi:10.1038/s41467-024-49972-w [paper, data]

Humid heat environment causes anxiety-like disorder via impairing gut microbiota and bile acid metabolism in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[26323] doi:10.1038/s41539-024-00255-5 [paper, repository]

Modulating social learning-induced evaluation updating during human sleep.

Journal: NPJ science of learning

Authors' code: OSF t96z5 (no license)

Status: code verified, 7 files readable, 5 matches

[26324] doi:10.3390/bioengineering11070689 [paper, repository]

Multi-Shared-Task Self-Supervised CNN-LSTM for Monitoring Free-Body Movement UPDRS-III Using Wearable Sensors.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: mshuqair/Multi-shared-task-Self-supervised-CNN-LSTM (no license)

Status: code verified, 14 files readable, 6 matches

[26325] doi:10.3390/ijms25137457 [paper, data]

Unveiling New Genetic Variants Associated with Age at Onset in Alzheimer's Disease and Frontotemporal Lobar Degeneration Due to <i>C9orf72</i> Repeat Expansions.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 6 July 2024 (11 papers)

[26326] doi:10.1007/s00429-024-02824-1 [paper, data]

Integrating brain function and structure in the study of the human attentional networks: a functionnectome study.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[26327] doi:10.1016/j.heliyon.2024.e34162 [paper, repository]

Innate responses to numerousness reveal neural activation in different brain regions in newly-hatched visually naïve chicks.

Journal: Heliyon

Authors' code: figshare 23748903 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[26328] doi:10.1016/j.heliyon.2024.e34257 [paper, data]

Effects of acute hippocampal stimulation in the nonhuman primate penicillin model of temporal lobe seizures.

Journal: Heliyon

Status: data only, 1 dataset cited

[26329] doi:10.1016/j.ohx.2024.e00553 [paper, data]

A low-cost and open-hardware portable 3-electrode sleep monitoring device.

Journal: HardwareX

Status: data only, 1 dataset cited

[26330] doi:10.1038/s41467-024-50010-y [paper, data]

Epigenetic maintenance of adult neural stem cell quiescence in the mouse hippocampus via Setd1a.

Journal: Nature communications

Status: data only, 1 dataset cited

[26331] doi:10.1080/15592294.2024.2374979 [paper, data]

TET1 displays catalytic and non-catalytic functions in the adult mouse cortex.

Journal: Epigenetics

Status: data only, 1 dataset cited

[26332] doi:10.1093/nc/niae029 [paper, repository]

Exploring complex and integrated information during sleep.

Journal: Neuroscience of consciousness

Authors' code: JunKitazono/BidirectionallyConnectedCores (no license), oizumi-lab/PhiToolbox (no license)

Status: code verified, 121 files readable, 3 matches

[26333] doi:10.1186/s13287-024-03818-w [paper, data]

Comprehensive characterization of the neurogenic and neuroprotective action of a novel TrkB agonist using mouse and human stem cell models of Alzheimer's disease.

Journal: Stem cell research & therapy

Status: data only, 3 datasets cited

[26334] doi:10.3390/ani14131998 [paper, data]

Transcriptional Signatures of Domestication Revealed through Meta-Analysis of Pig, Chicken, Wild Boar, and Red Junglefowl Gene Expression Data.

Journal: Animals : an open access journal from MDPI

Status: data only, 1 dataset cited

[26335] doi:10.3390/biom14070803 [paper, data]

The Role of the RNA Helicase DDX3X in Medulloblastoma Progression.

Journal: Biomolecules

Status: data only, 1 dataset cited

[26336] doi:10.3390/cells13131155 [paper, data]

Suppressing PD-L1 Expression via AURKA Kinase Inhibition Enhances Natural Killer Cell-Mediated Cytotoxicity against Glioblastoma.

Journal: Cells

Status: data only, 1 dataset cited

Friday, 5 July 2024 (26 papers)

[26337] doi:10.1007/s10048-024-00771-x [paper, data]

A perspective on epigenomic aging processes in the human brain and their plasticity in patients with mental disorders - a systematic review.

Journal: Neurogenetics

Status: data only, 1 dataset cited

[26338] doi:10.1016/j.isci.2024.110464 [paper, repository]

Respiratory infection with influenza A virus delays remyelination and alters oligodendrocyte metabolism.

Journal: iScience

Authors' code: supp:PMC11298649/mmc6.zip (no license)

Status: code verified, 1 file readable, 1 match

[26339] doi:10.1016/j.ynstr.2024.100660 [paper, repository]

Repeated exposure to multiple concurrent stressors alters visual processing in the adult posterior parietal cortex.

Journal: Neurobiology of stress

Authors' code: lurlab-uci/rundisc (MIT)

Status: code verified, 9 files readable

[26340] doi:10.1038/s41467-024-49908-4 [paper, repository]

CNS-wide repopulation by hematopoietic-derived microglia-like cells corrects progranulin deficiency in mice.

Journal: Nature communications

Authors' code: nolanlab/bead-normalization (GPL-3.0)

Status: code verified, 4 files readable

[26341] doi:10.1038/s41563-024-01942-9 [paper, data]

Quantifying mechanical forces during vertebrate morphogenesis.

Journal: Nature materials

Status: data only, 1 dataset cited

[26342] doi:10.1038/s42003-024-06518-6 [paper]

Imagined speech event detection from electrocorticography and its transfer between speech modes and subjects.

Journal: Communications biology

Status: code on request

[26343] doi:10.1038/s44220-024-00271-9 [paper, repository]

A cognitive neural circuit biotype of depression showing functional and behavioral improvement after transcranial magnetic stimulation in the B-SMART-fMRI trial.

Journal: Nature. Mental health

Authors' code: leotozzi88/tms_fmri_Go-NoGo_2023 (no license)

Status: dead link

[26344] doi:10.1073/pnas.2314511121 [paper, repository]

A mathematical theory of relational generalization in transitive inference.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 12172070 (CC-BY-4.0)

Status: code verified

[26345] doi:10.1073/pnas.2317608121 [paper, repository]

Unraveling the mesoscale organization induced by network-driven processes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gbarzon/jacobian_geometry (Apache-2.0)

Status: code verified, 6 files readable, 1 match

[26346] doi:10.1073/pnas.2317833121 [paper, data]

Parkinson's-linked LRRK2-G2019S derails AMPAR trafficking, mobility, and composition in striatum with cell-type and subunit specificity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26347] doi:10.1073/pnas.2320070121 [paper, data]

Positive regulation of Hedgehog signaling via phosphorylation of GLI2/GLI3 by DYRK2 kinase.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26348] doi:10.1073/pnas.2400596121 [paper]

Adult neurogenesis is necessary for functional regeneration of a forebrain neural circuit.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[26349] doi:10.1073/pnas.2403763121 [paper, repository]

Attenuating midline thalamus bursting to mitigate absence epilepsy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: superdongping/c_fos_count (no license), superdongping/SWD_detection (no license)

Status: code verified, 26 files readable, 5 matches

[26350] doi:10.1101/2024.07.03.601842 [paper, data]

Apparent Diffusion Coefficient fMRI shines light on white matter resting-state connectivity compared to BOLD

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[26351] doi:10.1117/1.nph.11.3.035002 [paper, repository]

Flexible circuit-based spatially aware modular optical brain imaging system for high-density measurements in natural settings.

Journal: Neurophotonics

Authors' code: COTILab/MOCA (GPL-3.0)

Status: code verified, 50 files readable, 2 matches

[26352] doi:10.1186/s13064-024-00189-z [paper, repository]

scMultiome analysis identifies a single caudal hindbrain compartment in the developing zebrafish nervous system.

Journal: Neural development

Authors' code: zfin.org (no license), rebeccaorourke-cu/Sagerstrom_CHB_SC_r6 (no license)

Status: code verified, 13 files readable, 6 matches

[26353] doi:10.1371/journal.pcbi.1012246 [paper, repository]

Nonlinear fusion is optimal for a wide class of multisensory tasks.

Journal: PLoS computational biology

Authors' code: ghoshm/Nonlinear_fusion (MIT)

Status: code verified, 20 files readable, 5 matches

[26354] doi:10.1371/journal.pcbi.1012259 [paper, repository]

Modeling the impact of neuromorphological alterations in Down syndrome on fast neural oscillations.

Journal: PLoS computational biology

Authors' code: pclus/neuromorphology (GPL-3.0)

Status: code verified, 8 files readable, 2 matches

[26355] doi:10.1371/journal.pone.0298110 [paper, repository]

Lateral frontoparietal effective connectivity differentiates and predicts state of consciousness in a cohort of patients with traumatic disorders of consciousness.

Journal: PloS one

Authors' code: RikuIhalainen/DCM-of-DoC (no license)

Status: code verified, 3 files readable, 3 matches

[26356] doi:10.1523/eneuro.0438-23.2024 [paper, repository]

Cell-Specific Single Viral Vector CRISPR/Cas9 Editing and Genetically Encoded Tool Delivery in the Central and Peripheral Nervous Systems.

Journal: eNeuro

Authors' code: jamiecm17/CRISPR-Cas9-Paper (no license)

Status: code verified, 3 files readable, 2 matches

[26357] doi:10.3389/fnhum.2024.1370572 [paper, data]

Predicting language outcome at birth.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[26358] doi:10.3390/ijms25137383 [paper, repository]

MMP-3 Knockout Induces Global Transcriptional Changes and Reduces Cerebral Infarction in Both Male and Female Models of Ischemic Stroke.

Journal: International journal of molecular sciences

Authors' code: ENCODE-DCC/long-rna-seq-pipeline (MIT)

Status: code verified, 180 files readable, 1 match

[26359] doi:10.3390/ijms25137391 [paper, repository]

Novel Insights into Changes in Gene Expression within the Hypothalamus in Two Asthma Mouse Models: A Transcriptomic Lung-Brain Axis Study.

Journal: International journal of molecular sciences

Authors' code: markziemann/lung_brain (MIT)

Status: code verified, 5 files readable, 4 matches

[26360] doi:10.3390/insects15070501 [paper]

A Female-Biased Chemosensory Protein PxutCSP19 in the Antennae of <i>Papilio xuthus</i> Tuned to Host Volatiles and Insecticides.

Journal: Insects

Status: data only

[26361] doi:10.7554/elife.91327 [paper, repository]

Early parafoveal semantic integration in natural reading.

Journal: eLife

Authors' code: yalipan666/Semantic (no license)

Status: code verified, 127 files readable, 11 matches

[26362] doi:10.7554/elife.91685 [paper, repository]

Factorized visual representations in the primate visual system and deep neural networks.

Journal: eLife

Authors' code: brain-score/vision (MIT), issalab/Lindsey-Issa-Factorization (MIT)

Status: code verified, 2,002 files readable, 3 matches

Thursday, 4 July 2024 (21 papers)

[26363] doi:10.1002/alz.13883 [paper, repository]

Stress testing the Centiloid: Precision and variability of PET quantification of amyloid pathology.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: MahnazShekari/Centiloid-pipeline (no license)

Status: code verified, 2 files readable

[26364] doi:10.1002/epi4.13002 [paper]

Efficacy of perampanel by etiology in Japanese patients with epilepsy-subpopulation analysis of a prospective post-marketing observational study.

Journal: Epilepsia open

Status: code on request

[26365] doi:10.1016/j.celrep.2024.114423 [paper, repository]

Competition and synergy of Arp2/3 and formins in nucleating actin waves.

Journal: Cell reports

Authors' code: min-wu-lab/2024-Chua-et-al (MIT), Zenodo 8083400 (other-open), min-wu-lab/mmo-analysis (MIT)

Status: code verified, 39 files readable, 6 matches

[26366] doi:10.1016/j.heliyon.2024.e34119 [paper]

Association of M2 macrophages with EMT in glioma identified through combination of multi-omics and machine learning.

Journal: Heliyon

Status: data only

[26367] doi:10.1016/j.jbc.2024.107540 [paper, data]

Characterization of ribosome stalling and no-go mRNA decay stimulated by the fragile X protein, FMRP.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[26368] doi:10.1016/j.neurot.2024.e00422 [paper, repository]

Identifying responders to vagus nerve stimulation based on microstructural features of thalamocortical tracts in drug-resistant epilepsy.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Authors' code: Hyedryn/elikopy (AGPL-3.0), AthenaEPI/dmipy (MIT), Zenodo 10514466 (CC-BY-4.0)

Status: code verified, 143 files readable, 12 matches

[26369] doi:10.1016/j.xpro.2024.103164 [paper]

Protocol for adeno-associated virus-mediated optogenetic activation of olfactory output neurons in neonatal mice.

Journal: STAR protocols

Status: code on request

[26370] doi:10.1016/j.xpro.2024.103168 [paper, repository]

Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq.

Journal: STAR protocols

Authors' code: fpauler/Multipotent-Progenitors-Instruct-Ontogeny-of-the-Superior-Colliculus (no license)

Status: code verified, 24 files readable, 2 matches

[26371] doi:10.1038/s41467-024-50014-8 [paper, data]

Illuminating the dark space of neutral glycosphingolipidome by selective enrichment and profiling at multi-structural levels.

Journal: Nature communications

Status: data only, 1 dataset cited

[26372] doi:10.1038/s41591-024-03118-z [paper, repository]

AI-based differential diagnosis of dementia etiologies on multimodal data.

Journal: Nature medicine

Authors' code: vkola-lab/nmed2024 (AGPL-3.0)

Status: code verified, 103 files readable, 16 matches

[26373] doi:10.1038/s41598-024-59263-5 [paper, data]

Temporal-spatial cross attention network for recognizing imagined characters.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26374] doi:10.1038/s41598-024-66346-w [paper, repository]

Going beyond still images to improve input variance resilience in multi-stream vision understanding models.

Journal: Scientific reports

Authors' code: amfad33/3-stream-model (no license)

Status: code verified, 30 files readable, 6 matches

[26375] doi:10.1038/s42003-024-06493-y [paper, repository]

Creative connections: the neural correlates of semantic relatedness are associated with creativity.

Journal: Communications biology

Authors' code: CaroHerault/CreativeConnections_scripts (no license)

Status: code verified, 7 files readable, 2 matches

[26376] doi:10.1038/s43856-024-00562-3 [paper]

Towards machine learning-based quantitative hyperspectral image guidance for brain tumor resection.

Journal: Communications medicine

Status: code on request

[26377] doi:10.1038/s44271-024-00114-4 [paper, repository]

A measure of reliability convergence to select and optimize cognitive tasks for individual differences research.

Journal: Communications psychology

Authors' code: jankawis.github.io/reliability-web-app (no license), jankaWIS/reliability-paper (MIT), Zenodo 11564065 (MIT), Zenodo 11564064 (CC-BY-4.0)

Status: code verified, 114 files readable, 4 matches

[26378] doi:10.1080/19585969.2024.2373075 [paper, repository]

Predictive values of pre-treatment brain age models to rTMS effects in neurocognitive disorder with depression: Secondary analysis of a randomised sham-controlled clinical trial.

Journal: Dialogues in clinical neuroscience

Authors' code: hannabrainscience/Brain-age-prediction (no license)

Status: empty repository, 1 file readable

[26379] doi:10.1186/s12868-024-00877-w [paper, data]

Changes of brain functional network in Alzheimer's disease and frontotemporal dementia: a graph-theoretic analysis.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[26380] doi:10.1186/s12868-024-00879-8 [paper, repository]

Persistent vocal learning in an aging open-ended learner reflected in neural FoxP2 expression.

Journal: BMC neuroscience

Authors' code: doi:10.5061/dryad.gb5mkkwvj (no license)

Status: code verified

[26381] doi:10.3389/fncel.2024.1434165 [paper, repository]

Ectopic burst induced by blockade of axonal potassium channels on the mouse hippocampal mossy fiber.

Journal: Frontiers in cellular neuroscience

Authors' code: modeldb:263034 (no license), modeldb:2015571 (no license)

Status: code verified

[26382] doi:10.3390/s24134355 [paper, data]

Comprehensive Review: Machine and Deep Learning in Brain Stroke Diagnosis.

Journal: Sensors (Basel, Switzerland)

Status: data only, 4 datasets cited

[26383] doi:10.48327/mtsi.v4i3.2024.452 [paper, repository]

[Multidrug-resistant Enterobacteriaceae meningoencephalitis in the Guinean-Malian area].

Journal: Medecine tropicale et sante internationale

Authors' code: doi:10.5281/hsd.v23i5.3615 (no license)

Status: dead link

Wednesday, 3 July 2024 (30 papers)

[26384] doi:10.1007/s10565-024-09894-1 [paper, data]

Zinc oxide nanoparticles induces cell death and consequently leading to incomplete neural tube closure through oxidative stress during embryogenesis.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[26385] doi:10.1016/j.ijchp.2024.100484 [paper, data]

Chronic academic stress improves attentional control: Behavioral and electrophysiological evidence.

Journal: International journal of clinical and health psychology : IJCHP

Status: data only, 1 dataset cited

[26386] doi:10.1016/j.isci.2024.110444 [paper, repository]

Kv2 channels do not function as canonical delayed rectifiers in spinal motoneurons.

Journal: iScience

Authors' code: Brownstone-lab/KV2_paper_Allfiles_for_jupyterNB (no license)

Status: code verified, 1 file readable, 7 matches

[26387] doi:10.1016/j.isci.2024.110453 [paper]

Delta-alpha/beta coupling as a signature of visual working memory in the prefrontal cortex.

Journal: iScience

Status: code on request

[26388] doi:10.1021/acsmedchemlett.4c00219 [paper, data]

Discovery and Characterization of a Chemical Probe for Cyclin-Dependent Kinase-Like 2.

Journal: ACS medicinal chemistry letters

Status: data only, 5 datasets cited

[26389] doi:10.1038/s41380-024-02648-9 [paper, data]

Influenza A virus during pregnancy disrupts maternal intestinal immunity and fetal cortical development in a dose- and time-dependent manner.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[26390] doi:10.1038/s41467-024-49923-5 [paper, repository]

Multi-omic characterization of allele-specific regulatory variation in hybrid pigs.

Journal: Nature communications

Authors' code: JianpingQuan/ASEanalysis (no license), Zenodo 11204941 (CC-BY-4.0)

Status: code verified, 140 files readable, 20 matches

[26391] doi:10.1038/s41586-024-07611-w [paper, repository]

Adenosine signalling to astrocytes coordinates brain metabolism and function.

Journal: Nature

Authors' code: Zenodo 10941579 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[26392] doi:10.1038/s41586-024-07619-2 [paper, repository]

Kinetic features dictate sensorimotor alignment in the superior colliculus.

Journal: Nature

Authors' code: AlexEMG/DeepLabCut (LGPL-3.0), AnaG-R/Visuomotor-model-SC (MIT)

Status: code verified, 532 files readable, 5 matches

[26393] doi:10.1038/s41586-024-07632-5 [paper, data]

The cortical amygdala consolidates a socially transmitted long-term memory.

Journal: Nature

Status: data only, 2 datasets cited

[26394] doi:10.1038/s41586-024-07643-2 [paper, repository]

Semantic encoding during language comprehension at single-cell resolution.

Journal: Nature

Authors' code: evarol/DREDge (MIT), williamunoz/InterpolationAfterDREDge (CC0-1.0)

Status: code verified, 190 files readable, 2 matches

[26395] doi:10.1038/s41598-024-60611-8 [paper, repository]

Structure focused neurodegeneration convolutional neural network for modelling and classification of Alzheimer's disease.

Journal: Scientific reports

Authors' code: Simi912/Deep-convolutional-neural-network-classifier-for-Alzheimer-s-Disease-1 (no license)

Status: code verified, 2 files readable, 3 matches

[26396] doi:10.1038/s41598-024-66117-7 [paper, repository]

Integrative network analysis of miRNA-mRNA expression profiles during epileptogenesis in rats reveals therapeutic targets after emergence of first spontaneous seizure.

Journal: Scientific reports

Authors' code: nirajkhe/EpimiRNA (GPL-2.0), Zenodo 7693342 (CC-BY-4.0)

Status: code verified, 4 files readable

[26397] doi:10.1038/s42003-024-06447-4 [paper]

Direct and indirect pathways for heterosynaptic interaction underlying developmental synapse elimination in the mouse cerebellum.

Journal: Communications biology

Status: code on request

[26398] doi:10.1038/s44271-024-00111-7 [paper, repository]

Expression perceptive fields explain individual differences in the recognition of facial emotions.

Journal: Communications psychology

Authors' code: OSF h4q6u (no license)

Status: code verified, 1 file readable, 3 matches

[26399] doi:10.1073/pnas.2306800121 [paper, repository]

The mechanics of correlated variability in segregated cortical excitatory subnetworks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 11398126 (CC-BY-4.0), gregoryhandy/the-mechanics-of-correlated-variability-in-segregated-cortical-excitatory-subnetworks (BSD-2-Clause)

Status: code verified, 22 files readable

[26400] doi:10.1098/rsos.240608 [paper, repository]

Androgen receptor alpha deficiency impacts aromatase expression in the female cichlid brain.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7300835 (no license)

Status: code found, still to be checked

[26401] doi:10.1098/rsos.240744 [paper, repository]

Physiological state matching in a pair bonded poison frog.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7305356 (no license)

Status: code found, still to be checked

[26402] doi:10.1111/acel.14263 [paper, data]

Transcriptomic and metabolomic changes might predict frailty in SAMP8 mice.

Journal: Aging cell

Status: data only, 1 dataset cited

[26403] doi:10.1117/1.nph.11.3.035001 [paper]

Detectability of hemodynamic oscillations in cerebral cortex through functional near-infrared spectroscopy: a simulation study.

Journal: Neurophotonics

Status: code on request

[26404] doi:10.1162/imag_a_00215 [paper, repository]

Individualised prediction of longitudinal change in multimodal brain imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: weikanggong/LongitudinalPrediction (no license)

Status: empty repository, 1 file readable

[26405] doi:10.1186/s12974-024-03161-0 [paper, repository]

Integrating single-nucleus RNA sequencing and spatial transcriptomics to elucidate a specialized subpopulation of astrocytes, microglia and vascular cells in brains of mouse model of lipopolysaccharide-induced sepsis-associated encephalopathy.

Journal: Journal of neuroinflammation

Authors' code: BGIResearch/SAW (GPL-3.0)

Status: code verified, 9 files readable

[26406] doi:10.1186/s13059-024-03327-2 [paper, data]

SETDB1 regulates short interspersed nuclear elements and chromatin loop organization in mouse neural precursor cells.

Journal: Genome biology

Status: data only, 1 dataset cited

[26407] doi:10.1242/dev.202990 [paper, data]

BET activity plays an essential role in control of stem cell attributes in Xenopus.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[26408] doi:10.1371/journal.pcbi.1012257 [paper, repository]

NeuroMotion: Open-source platform with neuromechanical and deep network modules to generate surface EMG signals during voluntary movement.

Journal: PLoS computational biology

Authors' code: shihan-ma/NeuroMotion (GPL-3.0), shihan-ma/BioMime (no license)

Status: code verified, 38 files readable, 11 matches

[26409] doi:10.1371/journal.pone.0305864 [paper, data]

Deep learning-based stress detection for daily life use using single-channel EEG and GSR in a virtual reality interview paradigm.

Journal: PloS one

Status: data only, 1 dataset cited

[26410] doi:10.1523/eneuro.0330-23.2024 [paper, repository]

The Lack of Synapsin Alters Presynaptic Plasticity at Hippocampal Mossy Fibers in Male Mice.

Journal: eNeuro

Authors' code: Imbrosci/synaptic-vesicles-detection (no license), FeliBrue/Bruentgens_et_al_2024 (MIT)

Status: code verified, 15 files readable, 10 matches

[26411] doi:10.3390/brainsci14070677 [paper, repository]

Regional Differences in Microbial Infiltration of Brain Tissue from Alzheimer's Disease Patients and Control Individuals.

Journal: Brain sciences

Authors' code: figshare 25902031 (CC-BY-4.0)

Status: code verified, 3 files readable, 3 matches

[26412] doi:10.3390/cancers16132449 [paper]

Deep Residual Learning-Based Classification with Identification of Incorrect Predictions and Quantification of Cellularity and Nuclear Morphological Features in Digital Pathological Images of Common Astrocytic Tumors.

Journal: Cancers

Status: code on request

[26413] doi:10.7554/elife.90944 [paper, repository]

Neurofeedback training can modulate task-relevant memory replay rate in rats.

Journal: eLife

Authors' code: LorenFrankLab/Gillespie_eLife_2024 (MIT)

Status: code verified, 27 files readable, 3 matches

Tuesday, 2 July 2024 (47 papers, 19 on this page)

[26414] doi:10.1007/s11547-024-01839-2 [paper, data]

Tracking longitudinal thalamic volume changes during early stages of SCA1 and SCA2.

Journal: La Radiologia medica

Status: data only, 2 datasets cited

[26415] doi:10.1016/j.actbio.2024.06.038 [paper, repository]

Discovering 3D hidden elasticity in isotropic and transversely isotropic materials with physics-informed UNets.

Journal: Acta biomaterialia

Authors' code: supp:PMC13128258/NIHMS2148087-supplement-example.mlx (no license)

Status: code verified, 1 file readable

[26416] doi:10.1016/j.cell.2024.06.001 [paper]

Loss of transient receptor potential channel 5 causes obesity and postpartum depression.

Journal: Cell

Status: code on request

[26417] doi:10.1016/j.cell.2024.06.010 [paper, data]

The germline coordinates mitokine signaling.

Journal: Cell

Status: code on request, 1 dataset cited

[26418] doi:10.1016/j.isci.2024.110256 [paper, data]

Altering heparan sulfate suppresses cell abnormalities and neuron loss in &lt;i&gt;Drosophila presenilin&lt;/i&gt; model of Alzheimer Disease.

Journal: iScience

Status: code on request, 2 datasets cited

[26419] doi:10.1016/j.neurot.2024.e00383 [paper, data]

Fibroblast growth factor 3 contributes to neuropathic pain through Akt/mTOR signaling in mouse primary sensory neurons.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[26420] doi:10.1016/j.nicl.2024.103638 [paper, repository]

Predicting recovery following stroke: Deep learning, multimodal data and feature selection using explainable AI.

Journal: NeuroImage. Clinical

Authors' code: ClearExplanationsAI/CLEAR-MRI (MIT)

Status: code verified, 19 files readable, 7 matches

[26421] doi:10.1021/acschemneuro.4c00116 [paper, repository]

Astrocyte Mitochondria Are a Sensitive Target of PCB52 and its Human-Relevant Metabolites.

Journal: ACS chemical neuroscience

Authors' code: ststrack/Strack-Lab-software (no license)

Status: empty repository

[26422] doi:10.1038/s41467-024-47365-7 [paper, repository]

Perirhinal cortex learns a predictive map of the task environment.

Journal: Nature communications

Authors' code: ramonnogueira/AutoPerirhinal (no license), common-chenlab (no license), Zenodo 10581525 (CC-BY-4.0), Zenodo 10581526 (CC-BY-4.0)

Status: code verified, 6 files readable, 4 matches

[26423] doi:10.1038/s41467-024-49442-3 [paper, repository]

A chemogenetic approach for dopamine imaging with tunable sensitivity.

Journal: Nature communications

Authors' code: PatriarchiLab/InVivoPhotometry (GPL-3.0)

Status: code verified, 39 files readable, 11 matches

[26424] doi:10.1038/s41467-024-49697-w [paper, repository]

Non-invasive and noise-robust light focusing using confocal wavefront shaping.

Journal: Nature communications

Authors' code: figshare 25348042 (CC-BY-4.0)

Status: code verified, 41 files readable, 3 matches

[26425] doi:10.1038/s41467-024-49702-2 [paper, repository]

Whole-exome sequencing identifies protein-coding variants associated with brain iron in 29,828 individuals.

Journal: Nature communications

Authors' code: Zenodo 11170064 (CC-BY-4.0), pcingola.github.io/snpeff (no license), saigegit/SAIGE (GPL-3.0), r-project.org (no license), cog-genomics.org/plink/2.0 (no license), fuma.ctglab.nl (no license), ctg.cncr.nl/software/magma (no license), string-db.org/.the (no license), weikanggong/BrainIronWES (no license)

Status: code verified, 72 files readable, 6 matches

[26426] doi:10.1038/s41467-024-49818-5 [paper, data]

Meningeal lymphatic supporting cells govern the formation and maintenance of zebrafish mural lymphatic endothelial cells.

Journal: Nature communications

Status: data only, 2 datasets cited

[26427] doi:10.1038/s41467-024-49845-2 [paper, repository]

Shifts in attention drive context-dependent subspace encoding in anterior cingulate cortex in mice during decision making.

Journal: Nature communications

Authors' code: CSNLWigner/mouse-acc-rnn-contextgatedattention (no license)

Status: code verified, 16 files readable, 7 matches

[26428] doi:10.1038/s41467-024-49897-4 [paper, repository]

Acquisition of non-olfactory encoding improves odour discrimination in olfactory cortex.

Journal: Nature communications

Authors' code: machenslab/dPCA (MIT), pillowlab/neuroGLM (MIT), marinburginlab/olfactionGLM (MIT)

Status: code verified, 157 files readable, 12 matches

[26429] doi:10.1038/s41593-024-01677-5 [paper, repository]

Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1.

Journal: Nature neuroscience

Authors' code: dekkerlab/cworld-dekker (Apache-2.0), BonevLab/Pereira_et_al_NatNeuro2024 (MIT)

Status: code verified, 116 files readable, 18 matches

[26430] doi:10.1038/s41593-024-01690-8 [paper]

Neural representation of human experimenters in the bat hippocampus.

Journal: Nature neuroscience

Status: code on request

[26431] doi:10.1038/s41597-024-03546-z [paper, data]

SignEEG v1.0: Multimodal Dataset with Electroencephalography and Hand-written Signature for Biometric Systems.

Journal: Scientific data

Status: data only, 1 dataset cited

[26432] doi:10.1038/s41597-024-03559-8 [paper, data]

Motion-BIDS: an extension to the brain imaging data structure to organize motion data for reproducible research.

Journal: Scientific data

Status: data only, 2 datasets cited

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