Every paper, by date: page 119

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 119 of 200: 2 July 2024 to 26 June 2024.

Tuesday, 2 July 2024 (47 papers, 28 on this page)

[26433] doi:10.1038/s41598-024-63496-9 [paper, data]

LMBiS-Net: A lightweight bidirectional skip connection based multipath CNN for retinal blood vessel segmentation.

Journal: Scientific reports

Status: data only, 3 datasets cited

[26434] doi:10.1038/s41598-024-64372-2 [paper, data]

Motor-sensory biases are associated with cognitive and social abilities in humans.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26435] doi:10.1038/s41598-024-65687-w [paper, repository]

Temporally extended successor feature neural episodic control.

Journal: Scientific reports

Authors' code: gitlab.inria.fr/robotlearn/sfnec (GPL-3.0)

Status: code verified, 70 files readable, 4 matches

[26436] doi:10.1038/s41598-024-65716-8 [paper, data]

Real-Time multifaceted artificial intelligence vs In-Person instruction in teaching surgical technical skills: a randomized controlled trial.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26437] doi:10.1038/s41598-024-65833-4 [paper, repository]

Behavioral and neural responses to social exclusion in women: the role of facial attractiveness and friendliness.

Journal: Scientific reports

Authors' code: BUCANL/EEG-IP-L (GPL-2.0)

Status: code verified, 30 files readable

[26438] doi:10.1038/s41598-024-66106-w [paper]

Zona incerta mediates early life isoflurane-induced fear memory deficits.

Journal: Scientific reports

Status: code on request

[26439] doi:10.1038/s41598-024-66110-0 [paper, data]

Power spectral density-based resting-state EEG classification of first-episode psychosis.

Journal: Scientific reports

Status: data only, 3 datasets cited

[26440] doi:10.1038/s42003-024-06462-5 [paper, data]

Ventrointermediate thalamic stimulation improves motor learning in humans.

Journal: Communications biology

Status: data only, 1 dataset cited

[26441] doi:10.1038/s42003-024-06506-w [paper, repository]

Flexible adaptation of task-positive brain networks predicts efficiency of evidence accumulation.

Journal: Communications biology

Authors' code: OSF yte76 (no license)

Status: code verified, 33 files readable, 6 matches

[26442] doi:10.1073/pnas.2321346121 [paper, repository]

A familiar face and person processing area in the human temporal pole.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: bmdeen/fmripermpipe (no license), bmdeen/identAnalysis (MIT)

Status: code verified, 139 files readable, 12 matches

[26443] doi:10.1093/braincomms/fcae220 [paper, data]

Head motion in the UK Biobank imaging subsample: longitudinal stability, associations with psychological and physical health, and risk of incomplete data.

Journal: Brain communications

Status: data only, 1 dataset cited

[26444] doi:10.1097/cmr.0000000000000982 [paper, data]

Interfering with aggregated α-synuclein in advanced melanoma leads to a major upregulation of MHC class II proteins.

Journal: Melanoma research

Status: data only, 1 dataset cited

[26445] doi:10.1097/j.pain.0000000000003315 [paper, repository]

A cellular mechanism contributing to pain-induced analgesia.

Journal: Pain

Authors' code: nevian_group_unibe/in-vitro-ephys (no license)

Status: code verified, 53 files readable, 2 matches

[26446] doi:10.1162/imag_a_00212 [paper, repository]

Volume electron microscopy in injured rat brain validates white matter microstructure metrics from diffusion MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: NYU-DiffusionMRI/RaW-seg (MIT), NYU-DiffusionMRI/DESIGNER-v1 (MIT), ekaden/smt (BSD-2-Clause), NYU-DiffusionMRI/Standard-Model-validation-using-3d-EM (MIT)

Status: code verified, 116 files readable, 12 matches

[26447] doi:10.1162/imag_a_00218 [paper, repository]

Automatic segmentation of the spinal cord nerve rootlets.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ivadomed/model-spinal-rootlets (MIT), spinalcordtoolbox/spinalcordtoolbox (LGPL-3.0)

Status: code verified, 269 files readable, 11 matches

[26448] doi:10.1186/s40478-024-01803-1 [paper]

Single-nucleus multi-omics of Parkinson's disease reveals a glutamatergic neuronal subtype susceptible to gene dysregulation via alteration of transcriptional networks.

Journal: Acta neuropathologica communications

Status: code on request

[26449] doi:10.1364/boe.528535 [paper, repository]

Spectral library and method for sparse unmixing of hyperspectral images in fluorescence guided resection of brain tumors.

Journal: Biomedical optics express

Authors' code: boe-15-8-4406-s001.pdf (no license)

Status: code found, still to be checked

[26450] doi:10.1371/journal.pone.0298102 [paper, repository]

Brain tumor classification in VIT-B/16 based on relative position encoding and residual MLP.

Journal: PloS one

Authors' code: zhulei2016/rst-saliency (BSD-2-Clause)

Status: code verified, 330 files readable

[26451] doi:10.1371/journal.pone.0304413 [paper, data]

Do all sedatives promote biological sleep electroencephalogram patterns? A machine learning framework to identify biological sleep promoting sedatives using electroencephalogram.

Journal: PloS one

Status: data only, 1 dataset cited

[26452] doi:10.2463/mrms.mp.2023-0124 [paper, data]

Deep Learning-based Hierarchical Brain Segmentation with Preliminary Analysis of the Repeatability and Reproducibility.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Status: data only, 1 dataset cited

[26453] doi:10.3389/fmed.2024.1379335 [paper, data]

Alterations in tryptophan metabolism and <i>de novo</i> NAD⁺ biosynthesis within the microbiota-gut-brain axis in chronic intestinal inflammation.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

[26454] doi:10.3389/fnhum.2024.1383630 [paper, repository]

Brain structure correlates of social information use: an exploratory machine learning approach.

Journal: Frontiers in human neuroscience

Authors' code: sudegroot/200SCANS (no license)

Status: code verified, 16 files readable, 8 matches

[26455] doi:10.3390/bioengineering11070672 [paper, data]

An Ensemble Machine Learning and Data Mining Approach to Enhance Stroke Prediction.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 2 datasets cited

[26456] doi:10.3758/s13414-024-02904-8 [paper, repository]

Neural mechanism underlying preview effects and masked priming effects in visual word processing.

Journal: Attention, perception & psychophysics

Authors' code: OSF hk37q (no license)

Status: empty repository

[26457] doi:10.3758/s13414-024-02916-4 [paper, repository]

An early effect of the parafoveal preview on post-saccadic processing of English words.

Journal: Attention, perception & psychophysics

Authors' code: OSF 6rzba (no license)

Status: code verified, 2 files readable, 7 matches

[26458] doi:10.7150/ijms.95848 [paper, data]

ZO-1 and IL-1RAP Phosphorylation: Potential Role in Mediated Brain-Gut Axis Dysregulation in Irritable Bowel Syndrome-like Stressed Mice.

Journal: International journal of medical sciences

Status: data only, 1 dataset cited

[26459] doi:10.7554/elife.89483 [paper, repository]

Hippocampus and striatum show distinct contributions to longitudinal changes in value-based learning in middle childhood.

Journal: eLife

Authors' code: OSF pju65 (no license)

Status: code verified, 7 files readable, 12 matches

[26460] doi:10.7554/elife.92543 [paper, repository]

Systemic pharmacological suppression of neural activity reverses learning impairment in a mouse model of Fragile X syndrome.

Journal: eLife

Authors' code: raymondlab/code (MIT)

Status: code verified, 481 files readable, 1 match

Monday, 1 July 2024 (93 papers)

[26461] doi:10.1001/jamanetworkopen.2024.20479 [paper, repository]

Dementia Subtypes Defined Through Neuropsychiatric Symptom-Associated Brain Connectivity Patterns.

Journal: JAMA network open

Authors' code: alienx-zero/scca_rsfc_nps (no license)

Status: code verified, 6 files readable, 3 matches

[26462] doi:10.1002/alz.14038 [paper, repository]

Plasma and CSF biomarkers of aging and cognitive decline in Caribbean vervets.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: cvcv23/Vervet-Proteomics (no license)

Status: empty repository, 1 file readable

[26463] doi:10.1002/brb3.3611 [paper, repository]

Choroid plexus volumes and auditory verbal learning scores are associated with conversion from mild cognitive impairment to Alzheimer's disease.

Journal: Brain and behavior

Authors' code: EhsanTadayon/choroid-plexus-segmentation (no license), rjaydewilliams/ADNI_CHP_MCI (no license)

Status: code verified, 4 files readable, 4 matches

[26464] doi:10.1002/cnr2.2080 [paper, data]

Evaluation of secretome biomarkers in glioblastoma cancer stem cells: A bioinformatics analysis.

Journal: Cancer reports (Hoboken, N.J.)

Status: code on request, 1 dataset cited

[26465] doi:10.1002/hbm.26715 [paper, repository]

MRI-based axis-referenced morphometric model corresponding to lamellar organization for assessing hippocampal atrophy in dementia.

Journal: Human brain mapping

Authors' code: calliegao/ARMM (no license)

Status: code verified, 2 files readable

[26466] doi:10.1002/hbm.26759 [paper, data]

Morphological patterns and spatial probability maps of the inferior frontal sulcus in the human brain.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[26467] doi:10.1002/hbm.26763 [paper, repository]

Bayesian varying-effects vector autoregressive models for inference of brain connectivity networks and covariate effects in pediatric traumatic brain injury.

Journal: Human brain mapping

Authors' code: marinavannucci/BVAR_connect (no license), YangfanR/VEVAR-fmri (no license)

Status: code verified, 12 files readable

[26468] doi:10.1002/hbm.26768 [paper, repository]

Brain-age prediction: Systematic evaluation of site effects, and sample age range and size.

Journal: Human brain mapping

Authors' code: centilebrain.org (no license)

Status: code verified

[26469] doi:10.1002/hbm.26770 [paper, data]

The role of alpha oscillations in free- and goal-directed semantic associations.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[26470] doi:10.1002/hbm.26776 [paper, repository]

Dynamic properties in functional connectivity changes and striatal dopamine deficiency in Parkinson's disease.

Journal: Human brain mapping

Authors' code: asendorfa/handling-gift (no license)

Status: code verified, 3 files readable, 1 match

[26471] doi:10.1002/hbm.26778 [paper, data]

Reliability of variability and complexity measures for task and task-free BOLD fMRI.

Journal: Human brain mapping

Status: code on request, 1 dataset cited

[26472] doi:10.1002/hbm.26782 [paper, repository]

Reliability of dynamic causal modelling of resting-state magnetoencephalography.

Journal: Human brain mapping

Authors' code: NIMG-22-2183/HM-reliability-of-DCM (no license)

Status: code verified, 4 files readable, 2 matches

[26473] doi:10.1002/hbm.26786 [paper, data]

Awareness of embodiment enhances enjoyment and engages sensorimotor cortices.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[26474] doi:10.1016/j.brs.2024.07.022 [paper, data]

Optogenetic fMRI reveals therapeutic circuits of subthalamic nucleus deep brain stimulation.

Journal: Brain stimulation

Status: data only, 2 datasets cited

[26475] doi:10.1016/j.ijchp.2024.100498 [paper, data]

Imaging body-mind crosstalk in young adults.

Journal: International journal of clinical and health psychology : IJCHP

Status: data only, 1 dataset cited

[26476] doi:10.1016/j.ijchp.2024.100501 [paper, repository]

Sensori-motor neurofeedback improves inhibitory control and induces neural changes: a placebo-controlled, double-blind, event-related potentials study.

Journal: International journal of clinical and health psychology : IJCHP

Authors' code: tmonseigne/SMR-Neurofeedback-Analysis (MIT)

Status: code verified, 7 files readable, 4 matches

[26477] doi:10.1016/j.isci.2024.110430 [paper]

Impaired phase separation and nucleolar functions in hiPSC models of &lt;i&gt;SNORD118&lt;/i&gt;-related ribosomopathies.

Journal: iScience

Status: code on request

[26478] doi:10.1016/j.nicl.2024.103637 [paper, repository]

Validation of fNIRS measurement of executive demand during walking with and without dual-task in younger and older adults and people with Parkinson's disease.

Journal: NeuroImage. Clinical

Authors' code: OSF uqy6d (no license), alkvi/fnirs_dataset_preparation (no license), alkvi/fnirs_validation_study (no license)

Status: code verified, 48 files readable, 8 matches

[26479] doi:10.1016/j.xcrm.2024.101630 [paper]

A multicenter, phase 1, Adult Brain Tumor Consortium trial of oral terameprocol for patients with recurrent high-grade glioma (GATOR).

Journal: Cell reports. Medicine

Status: code on request

[26480] doi:10.1016/j.xcrm.2024.101647 [paper, data]

Dysregulation of FLVCR1a-dependent mitochondrial calcium handling in neural progenitors causes congenital hydrocephalus.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[26481] doi:10.1016/j.xcrm.2024.101652 [paper]

Increased regional activity of a pro-autophagy pathway in schizophrenia as a contributor to sex differences in the disease pathology.

Journal: Cell reports. Medicine

Status: code on request

[26482] doi:10.1016/j.ynpai.2024.100166 [paper, repository]

Induction of long-term hyperexcitability by memory-related cAMP signaling in isolated nociceptor cell bodies.

Journal: Neurobiology of pain (Cambridge, Mass.)

Authors' code: rmcassidy/FIBSI_program (BSD-3-Clause)

Status: code verified, 8 files readable

[26483] doi:10.1038/s41467-024-48955-1 [paper, repository]

The chromatin regulator Ankrd11 controls cardiac neural crest cell-mediated outflow tract remodeling and heart function.

Journal: Nature communications

Authors' code: Zenodo 10998925 (CC-BY-4.0), voronlab/kibalnyk-2024-ankrd11 (AGPL-3.0)

Status: code verified, 9 files readable, 3 matches

[26484] doi:10.1038/s41467-024-49684-1 [paper, data]

CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment.

Journal: Nature communications

Status: data only, 6 datasets cited

[26485] doi:10.1038/s41567-024-02566-1 [paper, repository]

Empowering deep neural quantum states through efficient optimization.

Journal: Nature physics

Authors' code: Zenodo 7657551 (CC-BY-4.0), ChenAo-Phys/MinSR (MIT)

Status: code verified, 98 files readable, 1 match

[26486] doi:10.1038/s41591-024-02994-9 [paper]

Continuous neural control of a bionic limb restores biomimetic gait after amputation.

Journal: Nature medicine

Status: code on request

[26487] doi:10.1038/s41698-024-00632-8 [paper, repository]

Combination of MRI-based prediction and CRISPR/Cas12a-based detection for IDH genotyping in glioma.

Journal: NPJ precision oncology

Authors' code: google-research/vision_transformer (Apache-2.0), facebookresearch/mae (CC-BY-NC-4.0), Tofu-fish/Vit-for-IDH-genotyping (no license)

Status: code verified, 59 files readable, 1 match

[26488] doi:10.1042/bsr20240117 [paper, data]

Expression, purification and application of a recombinant, membrane permeating version of the light chain of botulinum toxin B.

Journal: Bioscience reports

Status: data only, 1 dataset cited

[26489] doi:10.1073/pnas.2403635121 [paper, data]

Capturing alterations of intracellular-extracellular lactate distribution in the brain using diffusion-weighted MR spectroscopy in vivo.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26490] doi:10.1083/jcb.202310022 [paper, data]

A force-sensitive mutation reveals a non-canonical role for dynein in anaphase progression.

Journal: The Journal of cell biology

Status: data only, 9 datasets cited

[26491] doi:10.1089/neur.2023.0059 [paper, repository]

Evaluation of Brain Function Recovery After Traumatic Brain Injury Treatment in a Porcine Model by Cross-Group Temporal-Spatial Correlation Analysis.

Journal: Neurotrauma reports

Authors' code: liebertpub.com/loi/neu14 (no license)

Status: code found, still to be checked

[26492] doi:10.1093/bib/bbae393 [paper, repository]

Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling.

Journal: Briefings in bioinformatics

Authors' code: Yixin-Hu/TetWild (GPL-3.0), modeldb:146950 (no license), ModelDBRepository/146950 (no license), NeuroBox3D/AnaMorph (LGPL-3.0), marwan-abdellah/OMesh (no license), epfl.ch/research/domains (no license), epfl.ch (no license), gnu.org/licenses/gpl-3.0.en.html (no license)

Status: code verified, 79 files readable, 3 matches

[26493] doi:10.1093/brain/awae051 [paper, repository]

A cell autonomous regulator of neuronal excitability modulates tau in Alzheimer's disease vulnerable neurons.

Journal: Brain : a journal of neurology

Authors' code: alz.princeton.edu (no license)

Status: code found, still to be checked

[26494] doi:10.1093/brain/awae114 [paper, data]

Subtitled speech: the neural mechanisms of ticker-tape synaesthesia.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[26495] doi:10.1093/cei/uxae032 [paper, data]

Dysregulated lipid metabolism networks modulate T-cell function in people with relapsing-remitting multiple sclerosis.

Journal: Clinical and experimental immunology

Status: data only, 1 dataset cited

[26496] doi:10.1093/cercor/bhae266 [paper, repository]

Top-down and bottom-up oscillatory dynamics regulate implicit visuomotor sequence learning.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF fmbkw (no license)

Status: code verified, 1 file readable, 1 match

[26497] doi:10.1093/cercor/bhae269 [paper, data]

MRI resting-state signature of the propensity to experience meaningful coincidences: a functional coupling analysis.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 2 datasets cited

[26498] doi:10.1093/cercor/bhae278 [paper, repository]

Task and stimulus coding in the multiple-demand network.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Washington-University/HCPpipelines (BSD-2-Clause)

Status: code verified, 463 files readable, 7 matches

[26499] doi:10.1093/cercor/bhae279 [paper, repository]

Mapping short association fibre connectivity up to V3 in the human brain in vivo.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: dchaimow/streamline_positions_from_surfaces (no license)

Status: code verified, 3 files readable

[26500] doi:10.1093/cercor/bhae280 [paper, repository]

Get out of my head: social evaluative brain states carry over into post-feedback rest and influence remembering how others view us.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 4a98m (no license)

Status: code verified, 9 files readable, 14 matches

[26501] doi:10.1093/function/zqae013 [paper, repository]

The Left-Right Side-Specific Neuroendocrine Signaling from Injured Brain: An Organizational Principle.

Journal: Function (Oxford, England)

Authors' code: YaromirKo/biostatistics-nms (MIT)

Status: code verified, 45 files readable, 11 matches

[26502] doi:10.1093/genetics/iyae077 [paper, data]

TWISP: a transgenic worm for interrogating signal propagation in Caenorhabditis elegans.

Journal: Genetics

Status: data only, 1 dataset cited

[26503] doi:10.1093/molbev/msae123 [paper, data]

The Human Developing Cerebral Cortex Is Characterized by an Elevated De Novo Expression of Long Noncoding RNAs in Excitatory Neurons.

Journal: Molecular biology and evolution

Status: data only, 2 datasets cited

[26504] doi:10.1093/nar/gkae457 [paper, repository]

PHF2 regulates genome topology and DNA replication in neural stem cells via cohesin.

Journal: Nucleic acids research

Authors' code: ncbi/sra-tools (other), open2c/cooler (BSD-3-Clause)

Status: code verified, 1,710 files readable

[26505] doi:10.1093/nar/gkae522 [paper, data]

Cooperative Gsx2-DNA binding requires DNA bending and a novel Gsx2 homeodomain interface.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[26506] doi:10.1093/narmme/ugae011 [paper, repository]

Nuclear expansion and chromatin structure remodeling in mouse aging neurons.

Journal: NAR molecular medicine

Authors' code: nvictus/lavaburst (MIT), theislab/diffxpy (BSD-3-Clause), shappiron/Aging_Brain_Mice (no license), Zenodo 13711283 (CC-BY-4.0)

Status: code verified, 88 files readable, 1 match

[26507] doi:10.1093/pnasnexus/pgae261 [paper, repository]

Nondifferentiable activity in the brain.

Journal: PNAS nexus

Authors' code: yasuhirotsubo/neuroscience (GPL-3.0)

Status: code verified, 25 files readable, 9 matches

[26508] doi:10.1093/radadv/umae019 [paper, repository]

Deep learning-based amyloid PET harmonization to predict cognitive decline in non-demented elderly.

Journal: Radiology advances

Authors' code: yoonchoi-neuro/amylPET_DL-ADprob (no license)

Status: code verified, 1 file readable

[26509] doi:10.1093/scan/nsae043 [paper, repository]

More than labels: neural representations of emotion words are widely distributed across the brain.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF wmszj (no license)

Status: code verified, 6 files readable, 5 matches

[26510] doi:10.1093/scan/nsae044 [paper, repository]

Early adolescent perceived friendship quality aids affective and neural responses to social inclusion and exclusion in young adults with and without adverse childhood experiences.

Journal: Social cognitive and affective neuroscience

Authors' code: repository.cam.ac.uk (no license)

Status: code verified

[26511] doi:10.1093/scan/nsae045 [paper, repository]

Normativity vs. uniqueness: effects of social relationship strength on neural representations of others.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF wnyma (no license)

Status: code verified, 7 files readable

[26512] doi:10.1093/scan/nsae050 [paper, repository]

D2 dopamine receptor expression, reactivity to rewards, and reinforcement learning in a complex value-based decision-making task.

Journal: Social cognitive and affective neuroscience

Authors' code: cbanuelos/DRD2_Abnormal_Learning (no license)

Status: code verified, 6 files readable, 3 matches

[26513] doi:10.1093/sleep/zsae101 [paper]

Interindividual differences in mindfulness are linked to sleep-electroencephalographic characteristics.

Journal: Sleep

Status: code on request

[26514] doi:10.1111/acel.14251 [paper, repository]

Single-cell sequencing unveils the impact of aging on the progenitor cell diversity in the telencephalon of the female killifish N. furzeri.

Journal: Aging cell

Authors' code: ayanarajagopal/YA-Killifish_scSeq (no license)

Status: code verified, 11 files readable, 21 matches

[26515] doi:10.1111/adb.13419 [paper, repository]

The ReCoDe addiction research consortium: Losing and regaining control over drug intake-Findings and future perspectives.

Journal: Addiction biology

Authors' code: OSF n5a2z (no license)

Status: code verified

[26516] doi:10.1111/adb.13423 [paper]

Altered executive control network and default model network topology are linked to acute electronic cigarette use: A resting-state fNIRS study.

Journal: Addiction biology

Status: code on request

[26517] doi:10.1111/cns.14791 [paper, data]

Targeting MS4A4A: A novel pathway to improve immunotherapy responses in glioblastoma.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[26518] doi:10.1111/cns.14818 [paper, data]

GSK3: A potential target and pending issues for treatment of Alzheimer's disease.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[26519] doi:10.1111/cns.14850 [paper, data]

NDC80/HEC1 promotes macrophage polarization and predicts glioma prognosis via single-cell RNA-seq and in vitro experiment.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[26520] doi:10.1111/cns.14866 [paper, repository]

Common functional mechanisms underlying dynamic brain network changes across five general anesthetics: A rat fMRI study.

Journal: CNS neuroscience & therapeutics

Authors' code: CoBrALab/RABIES (other)

Status: code verified, 54 files readable, 6 matches

[26521] doi:10.1117/1.jmi.11.4.044008 [paper]

Field-of-view extension for brain diffusion MRI via deep generative models.

Journal: Journal of medical imaging (Bellingham, Wash.)

Status: code on request

[26522] doi:10.1117/1.jmi.11.4.044508 [paper, repository]

Generative adversarial network-based reconstruction of healthy anatomy for anomaly detection in brain CT scans.

Journal: Journal of medical imaging (Bellingham, Wash.)

Authors' code: odegeasslbc/fastgan-pytorch (no license)

Status: code found, still to be checked

[26523] doi:10.1117/1.nph.11.3.034312 [paper, repository]

Computer vision-guided open-source active commutator for neural imaging in freely behaving animals.

Journal: Neurophotonics

Authors' code: bsbrl/Motorized-Commutator (no license)

Status: code verified, 15 files readable, 2 matches

[26524] doi:10.1117/1.nph.11.3.035007 [paper, repository]

Optical constraints on two-photon voltage imaging.

Journal: Neurophotonics

Authors' code: luminosmicroscopy.com (no license), adamcohenlab/luminos-microscopy (other)

Status: code verified, 612 files readable, 3 matches

[26525] doi:10.1117/1.nph.11.3.035008 [paper]

Exploring the impact of pre-anastomosis cerebral microcirculation on cerebral hyperperfusion syndrome in superficial temporal artery-middle cerebral artery bypass surgery of moyamoya disease.

Journal: Neurophotonics

Status: code on request

[26526] doi:10.1117/1.nph.11.3.035009 [paper]

Two-photon optogenetics-based assessment of neuronal connectivity in healthy and chronic hypoperfusion mice.

Journal: Neurophotonics

Status: code on request

[26527] doi:10.1117/1.nph.11.3.036601 [paper, repository]

ninjaCap: a fully customizable and 3D printable headgear for functional near-infrared spectroscopy and electroencephalography brain imaging.

Journal: Neurophotonics

Authors' code: bunpc/atlasviewer (BSD-2-Clause)

Status: code verified, 1,021 files readable, 3 matches

[26528] doi:10.1148/ryai.230364 [paper, repository]

Performance of an Open-Source Large Language Model in Extracting Information from Free-Text Radiology Reports.

Journal: Radiology. Artificial intelligence

Authors' code: BastienLeGuellec/RadioVicuna (Apache-2.0)

Status: code verified, 5 files readable

[26529] doi:10.1158/2159-8290.cd-24-0139 [paper, data]

The Pan-RAF-MEK Nondegrading Molecular Glue NST-628 Is a Potent and Brain-Penetrant Inhibitor of the RAS-MAPK Pathway with Activity across Diverse RAS- and RAF-Driven Cancers.

Journal: Cancer discovery

Status: data only, 2 datasets cited

[26530] doi:10.1158/2767-9764.crc-23-0566 [paper, data]

Epigenetic Induction of Cancer-Testis Antigens and Endogenous Retroviruses at Single-Cell Level Enhances Immune Recognition and Response in Glioma.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[26531] doi:10.1162/jocn_a_02182 [paper, repository]

Spatiotemporal Properties of Common Semantic Categories for Words and Pictures.

Journal: Journal of cognitive neuroscience

Authors' code: Y-Bezs/cross-modal-project (no license)

Status: code verified, 81 files readable, 4 matches

[26532] doi:10.1162/netn_a_00357 [paper, repository]

On null models for temporal small-worldness in brain dynamics.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: aurorarossi/TemporalBrainNetworksCode (no license)

Status: code verified, 25 files readable, 2 matches

[26533] doi:10.1162/netn_a_00361 [paper, repository]

Individualized epidemic spreading models predict epilepsy surgery outcomes: A pseudo-prospective study.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: anapmillan/ESSES (AGPL-3.0)

Status: code verified, 24 files readable, 9 matches

[26534] doi:10.1162/netn_a_00362 [paper, repository]

Altered correlation of concurrently recorded EEG-fMRI connectomes in temporal lobe epilepsy.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: jwirsich/eeg-fmri-tle (MIT)

Status: code verified, 20 files readable, 2 matches

[26535] doi:10.1162/netn_a_00363 [paper, repository]

Comparing the stability and reproducibility of brain-behavior relationships found using canonical correlation analysis and partial least squares within the ABCD sample.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: hajernakua/cca_pls_comparison_ABCD (no license)

Status: code verified, 23 files readable, 10 matches

[26536] doi:10.1162/netn_a_00364 [paper, repository]

Similar neural states, but dissimilar decoding patterns for motor control in parietal cortex.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: sdiomedi/neuralhiddenmarkovmodel-oneemissionvariable (BSD-3-Clause)

Status: code verified, 21 files readable, 4 matches

[26537] doi:10.1162/netn_a_00367 [paper, repository]

Impaired brain-heart axis in focal epilepsy: Alterations in information flow and implications for seizure dynamics.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: CatramboneVincenzo/Brain-Heart-Interaction-Indices (no license)

Status: dead link

[26538] doi:10.1162/netn_a_00369 [paper, repository]

Measures of the coupling between fluctuating brain network organization and heartbeat dynamics.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: diegocandiar/brain_heart_psv_sdg (no license), minepy (no license)

Status: code verified, 4 files readable

[26539] doi:10.1167/iovs.65.8.39 [paper, repository]

Optimization-Based Pairwise Interaction Point Process (O-PIPP): A Precise and Universal Retinal Mosaic Modeling Approach.

Journal: Investigative ophthalmology & visual science

Authors' code: heliy/OPIPP (MIT)

Status: code verified, 13 files readable, 2 matches

[26540] doi:10.1167/jov.24.7.15 [paper, repository]

The radial-tangential anisotropy of numerosity perception.

Journal: Journal of vision

Authors' code: miaoli-psy/ms2_numerosity (BSD-2-Clause)

Status: code verified, 28 files readable, 2 matches

[26541] doi:10.1167/tvst.13.7.13 [paper, repository]

SLO-Net: Enhancing Multiple Sclerosis Diagnosis Beyond Optical Coherence Tomography Using Infrared Reflectance Scanning Laser Ophthalmoscopy Images.

Journal: Translational vision science & technology

Authors' code: royaarian101/SLO-MSNet (no license)

Status: code verified, 12 files readable, 4 matches

[26542] doi:10.1242/bio.061721 [paper, repository]

Characterization of alternative splicing during mammalian brain development reveals the extent of isoform diversity and potential effects on protein structural changes.

Journal: Biology open

Authors' code: BeatrizToledo/paper (no license)

Status: code verified, 33 files readable, 3 matches

[26543] doi:10.1364/oe.521581 [paper, repository]

Unwrapping non-locality in the image transmission through turbid media.

Journal: Optics express

Authors' code: Zenodo 11657876 (CC-BY-4.0)

Status: code verified, 2 files readable, 2 matches

[26544] doi:10.1364/oe.525479 [paper, repository]

Frequency-multiplexed aberration measurement for confocal microscopy.

Journal: Optics express

Authors' code: figshare 178662 (CC-BY-4.0)

Status: empty repository

[26545] doi:10.1371/journal.pbio.3002706 [paper, data]

Retrieval of contextual memory can be predicted by CA3 remapping and is differentially influenced by NMDAR activity in rat hippocampus subregions.

Journal: PLoS biology

Status: data only, 1 dataset cited

[26546] doi:10.1371/journal.pcbi.1012220 [paper, repository]

Co-existence of synaptic plasticity and metastable dynamics in a spiking model of cortical circuits.

Journal: PLoS computational biology

Authors' code: lacameralab/learning-metastability (no license)

Status: code verified, 3 files readable, 2 matches

[26547] doi:10.1371/journal.pcbi.1012237 [paper, repository]

Model-based analysis of the acute effects of transcutaneous magnetic spinal cord stimulation on micturition after spinal cord injury in humans.

Journal: PLoS computational biology

Authors' code: mfardadi/Model-based-Analysis (no license)

Status: code verified, 4 files readable

[26548] doi:10.1371/journal.pone.0299784 [paper, data]

Behavioral and neural measures of confidence using a novel auditory pitch identification task.

Journal: PloS one

Status: data only, 1 dataset cited

[26549] doi:10.1503/jpn.230118 [paper]

Plasma exosomes carrying mmu-miR-146a-5p and Notch signalling pathway-mediated synaptic activity in schizophrenia.

Journal: Journal of psychiatry & neuroscience : JPN

Status: data only

[26550] doi:10.2147/nss.s463495 [paper, repository]

Brain Age Estimation from Overnight Sleep Electroencephalography with Multi-Flow Sequence Learning.

Journal: Nature and science of sleep

Authors' code: dizhang-xdu/brain-age (MIT)

Status: code verified, 23 files readable, 5 matches

[26551] doi:10.2337/db23-0123 [paper, data]

Efficient Vascular and Neural Engraftment of Stem Cell-Derived Islets.

Journal: Diabetes

Status: data only, 1 dataset cited

[26552] doi:10.5281/zenodo.11397347 [paper, repository]

[Electromyography in atypical variants of motor neuron disease: a case series].

Journal: Revista medica del Instituto Mexicano del Seguro Social

Authors' code: Zenodo 10278187 (CC-BY-4.0)

Status: empty repository

[26553] doi:10.5765/jkacap.240008 [paper, data]

The Relationship Between Brain Activation for Taking Others' Perspective and Interoceptive Abilities in Autism Spectrum Disorder: An fMRI Study.

Journal: Journal of the Korean Academy of Child and Adolescent Psychiatry

Status: data only, 1 dataset cited

Sunday, 30 June 2024 (1 paper)

[26554] doi:10.3390/s24134256 [paper, data]

Efficient Generalized Electroencephalography-Based Drowsiness Detection Approach with Minimal Electrodes.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 29 June 2024 (15 papers)

[26555] doi:10.1016/j.bpr.2024.100169 [paper, repository]

Numerical model for electrogenic transport by the ATP-dependent potassium pump KdpFABC.

Journal: Biophysical reports

Authors' code: Zenodo 10934111 (CC-BY-4.0), dls4n/pumpsim (no license)

Status: code verified, 4 files readable, 4 matches

[26556] doi:10.1016/j.bpsgos.2024.100357 [paper, repository]

Distinct Mindfulness States Produce Dissociable Effects on Neural Markers of Emotion Processing: Evidence From the Late Positive Potential.

Journal: Biological psychiatry global open science

Authors' code: OSF uv9yn (no license)

Status: code verified, 14 files readable

[26557] doi:10.1016/j.bpsgos.2024.100358 [paper, repository]

Altered Physiological, Affective, and Functional Connectivity Responses to Acute Stress in Patients With Alcohol Use Disorder.

Journal: Biological psychiatry global open science

Authors' code: OSF cm7kb (no license)

Status: code verified, 2 files readable, 3 matches

[26558] doi:10.1016/j.isci.2024.110419 [paper, data]

Integrity assay for messenger RNA in mouse and human brain samples and synaptosomal preparations.

Journal: iScience

Status: code on request, 1 dataset cited

[26559] doi:10.1016/j.yhbeh.2024.105596 [paper, repository]

Linking menopause-related factors, history of depression, APOE ε4, and proxies of biological aging in the UK biobank cohort.

Journal: Hormones and behavior

Authors' code: dmlc/xgboost (Apache-2.0), ukbiobank.ac.uk/enable-your-research/register (no license)

Status: code verified, 1,114 files readable, 3 matches

[26560] doi:10.1038/s41386-024-01902-6 [paper, data]

Identification of novel genetic loci and candidate genes for progressive ethanol consumption in diversity outbred mice.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[26561] doi:10.1038/s41398-024-02929-5 [paper, repository]

Dynamicity of brain network organization &amp; their community architecture as characterizing features for classification of common mental disorders from whole-brain connectome.

Journal: Translational psychiatry

Authors' code: aaronclauset.github.io/wsbm (no license), cbdl/workspace (no license)

Status: code verified

[26562] doi:10.1038/s41467-024-49173-5 [paper, repository]

Shared functional specialization in transformer-based language models and the human brain.

Journal: Nature communications

Authors' code: tsumers/bert-brains (GPL-3.0), stanojevic/ccgtools (MIT), thomasyeolab/cbig (MIT), Zenodo 10863840 (CC-BY-4.0)

Status: code verified, 2,095 files readable, 12 matches

[26563] doi:10.1038/s41467-024-49794-w [paper, repository]

Prefrontal cortex neurons encode ambient light intensity differentially across regions and layers.

Journal: Nature communications

Authors' code: hhentschke/measures-of-effect-size-toolbox (BSD-2-Clause), elyashivzangen/light-and-the-mPFC-code (no license), Zenodo 11265775 (CC-BY-4.0)

Status: code verified, 694 files readable, 9 matches

[26564] doi:10.1038/s41531-024-00743-w [paper, repository]

Associations of cholinergic system integrity with cognitive decline in GBA1 and LRRK2 mutation carriers.

Journal: NPJ Parkinson's disease

Authors' code: mvgolub/FW-DTI-Beltrami (BSD-3-Clause)

Status: code verified, 13 files readable, 1 match

[26565] doi:10.1038/s42003-024-06461-6 [paper, repository]

Predicting creative behavior using resting-state electroencephalography.

Journal: Communications biology

Authors' code: nitrc.org/projects/bioimagesuite (no license), bioimagesuiteweb.github.io/webapp (no license)

Status: code verified

[26566] doi:10.1111/cpr.13697 [paper, repository]

Single-cell RNA sequencing elucidated the landscape of breast cancer brain metastases and identified ILF2 as a potential therapeutic target.

Journal: Cell proliferation

Authors' code: dylkot/cNMF (MIT)

Status: code verified, 19 files readable

[26567] doi:10.1186/s13148-024-01701-2 [paper, repository]

Epigenetic scores derived in saliva are associated with gestational age at birth.

Journal: Clinical epigenetics

Authors' code: OSF 4jnfv (no license)

Status: empty repository

[26568] doi:10.3390/brainsci14070669 [paper]

Verbal Learning and Memory Deficits across Neurological and Neuropsychiatric Disorders: Insights from an ENIGMA Mega Analysis.

Journal: Brain sciences

Status: code on request

[26569] doi:10.3390/brainsci14070670 [paper, data]

Children and Young Adults with Epilepsy Exhibit an Interictal Autonomic Dysfunction: A Prospective Exploratory Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

Friday, 28 June 2024 (29 papers)

[26570] doi:10.1007/s12035-024-04293-3 [paper, data]

Novel Isoforms of Adhesion G Protein-Coupled Receptor B1 (ADGRB1/BAI1) Generated from an Alternative Promoter in Intron 17.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[26571] doi:10.1016/j.omtn.2024.102264 [paper]

Enhanced AAV transduction across preclinical CNS models: A comparative study in human brain organoids with cross-species evaluations.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[26572] doi:10.1016/j.xpro.2024.103160 [paper, repository]

Protocol for matching protein localization to synapse morphology in primary rat neurons by correlative super-resolution microscopy.

Journal: STAR protocols

Authors' code: Zenodo 11197887 (CC-BY-4.0), biorender.com (no license)

Status: code verified, 3 files readable, 1 match

[26573] doi:10.1038/s41467-024-49449-w [paper, data]

A fluorescent perilipin 2 knock-in mouse model reveals a high abundance of lipid droplets in the developing and adult brain.

Journal: Nature communications

Status: code on request, 1 dataset cited

[26574] doi:10.1038/s41467-024-49669-0 [paper, repository]

Immersive scene representation in human visual cortex with ultra-wide-angle neuroimaging.

Journal: Nature communications

Authors' code: jpark203.github.io/fullfield-neuroimaging (no license), jpark203/FullField-ImageWarping (no license), Zenodo 11113136 (CC-BY-4.0), jpark203/fullfield-imagewapring (no license)

Status: code verified, 9 files readable

[26575] doi:10.1038/s41467-024-49719-7 [paper, repository]

Synergistic olfactory processing for social plasticity in desert locusts.

Journal: Nature communications

Authors' code: Zenodo 11190013 (CC-BY-4.0), yannickguenzel/petelski-guenzel-et-al-syn-olf-proc (no license)

Status: code verified, 60 files readable, 21 matches

[26576] doi:10.1038/s41598-024-65747-1 [paper, data]

Exploring the dynamics of prefrontal cortex in the interaction between orienteering experience and cognitive performance by fNIRS.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26577] doi:10.1073/pnas.2316608121 [paper, data]

A computational account of transsaccadic attentional allocation based on visual gain fields.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26578] doi:10.1093/braincomms/fcae223 [paper, repository]

Repeat traumatic brain injury exacerbates acute thalamic hyperconnectivity in humans.

Journal: Brain communications

Authors' code: rebeccaemma24/Repeat_mTBI_thalamic_hyperconnectivity (no license)

Status: code verified, 7 files readable, 4 matches

[26579] doi:10.1111/eva.13703 [paper, repository]

Genetic and epigenetic differentiation in response to genomic selection for avian lay date.

Journal: Evolutionary applications

Authors' code: MLindner0/GenomicSelection_AvianLayDate_WGBS (no license)

Status: dead link

[26580] doi:10.1126/sciadv.adk2913 [paper, data]

Regulation of blood-brain barrier integrity by &lt;i&gt;Dmp1&lt;/i&gt;-expressing astrocytes through mitochondrial transfer.

Journal: Science advances

Status: data only, 1 dataset cited

[26581] doi:10.1126/science.ado7082 [paper, repository]

Brainwide silencing of prion protein by AAV-mediated delivery of an engineered compact epigenetic editor.

Journal: Science (New York, N.Y.)

Authors' code: nanoporetech/modkit (GPL-3.0), edwin-n-neumann/CHARM_x_Prion (no license)

Status: code verified, 135 files readable, 1 match

[26582] doi:10.1162/imag_a_00203 [paper]

The contribution of the vascular architecture and cerebrovascular reactivity to the BOLD signal formation across cortical depth.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[26583] doi:10.1162/imag_a_00206 [paper, repository]

The neural correlates of response inhibition across the transition from infancy to toddlerhood: An fNIRS study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: figshare 13258814 (CC-BY-4.0), nitrc.org/projects/homer2 (no license), DOT-HUB (no license)

Status: code verified, 17 files readable

[26584] doi:10.1162/imag_a_00209 [paper, repository]

Enhancement of brain atlases with laminar coordinate systems: Flatmaps and barrel column annotations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: BlueBrain/atlas-enhancement (Apache-2.0)

Status: code verified, 96 files readable, 5 matches

[26585] doi:10.1162/opmi_a_00150 [paper, repository]

On the Mathematical Relationship Between Contextual Probability and N400 Amplitude.

Journal: Open mind : discoveries in cognitive science

Authors' code: OSF w5hez (no license)

Status: code verified, 6 files readable, 1 match

[26586] doi:10.1186/s12993-024-00243-0 [paper, data]

Neuroanatomical correlates of musicianship in left-handers.

Journal: Behavioral and brain functions : BBF

Status: data only, 1 dataset cited

[26587] doi:10.1186/s13578-024-01268-8 [paper, data]

Generation and transcriptomic characterization of MIR137 knockout miniature pig model for neurodevelopmental disorders.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[26588] doi:10.1364/boe.523430 [paper, repository]

3D super-resolution optical fluctuation imaging with temporal focusing two-photon excitation.

Journal: Biomedical optics express

Authors' code: Zenodo 11094685 (CC-BY-4.0)

Status: code verified

[26589] doi:10.1371/journal.pbio.3002624 [paper, repository]

The human hypothalamus coordinates switching between different survival actions.

Journal: PLoS biology

Authors' code: OSF k5p3m (no license)

Status: code verified, 2 files readable, 3 matches

[26590] doi:10.3389/fcvm.2024.1368094 [paper, repository]

Association between deep neural network-derived electrocardiographic-age and incident stroke.

Journal: Frontiers in cardiovascular medicine

Authors' code: antonior92/ecg-age-prediction (MIT)

Status: code verified, 8 files readable, 1 match

[26591] doi:10.3389/fninf.2024.1392661 [paper, data]

Explainable deep-learning framework: decoding brain states and prediction of individual performance in false-belief task at early childhood stage.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[26592] doi:10.3389/fphys.2024.1403545 [paper, repository]

Re-entry in models of cardiac ventricular tissue with scar represented as a Gaussian random field.

Journal: Frontiers in physiology

Authors' code: RichardClayton/VentricularFibrosis (no license)

Status: code verified, 37 files readable, 7 matches

[26593] doi:10.3389/fpsyt.2024.1323109 [paper, repository]

DeepRetroMoCo: deep neural network-based retrospective motion correction algorithm for spinal cord functional MRI.

Journal: Frontiers in psychiatry

Authors' code: mahdimplus/DeepRetroMoco (MIT)

Status: code verified, 26 files readable, 1 match

[26594] doi:10.3390/nu16132073 [paper]

Abnormality in Peripheral and Brain Iron Contents and the Relationship with Grey Matter Volumes in Major Depressive Disorder.

Journal: Nutrients

Status: code on request

[26595] doi:10.7554/elife.87753 [paper, repository]

GABAergic synaptic scaling is triggered by changes in spiking activity rather than AMPA receptor activation.

Journal: eLife

Authors' code: pwenner/Wenner-eLIfe-data (MIT)

Status: empty repository, 2 files readable

[26596] doi:10.7554/elife.90278 [paper, data]

Serotonergic and dopaminergic neurons in the dorsal raphe are differentially altered in a mouse model for parkinsonism.

Journal: eLife

Status: data only, 3 datasets cited

[26597] doi:10.7554/elife.92938 [paper, repository]

Neural interactions in the human frontal cortex dissociate reward and punishment learning.

Journal: eLife

Authors' code: brainets/papercode (GPL-3.0)

Status: code verified, 20 files readable, 1 match

[26598] doi:10.7717/peerj.17623 [paper, repository]

Dragon boat exercise reshapes the temporal-spatial dynamics of the brain.

Journal: PeerJ

Authors' code: supp:PMC11216202/peerj-12-17623-s002.rar (no license)

Status: code verified

Thursday, 27 June 2024 (17 papers)

[26599] doi:10.1002/mrm.30201 [paper, repository]

Accelerated 3D multi-channel B 1 + mapping at 7 T for the brain and heart.

Journal: Magnetic resonance in medicine

Authors' code: jameslewiskent/Acc3DmTxMapping (no license)

Status: code verified, 65 files readable, 8 matches

[26600] doi:10.1016/j.celrep.2024.114413 [paper, repository]

Probing multiplexed basal dendritic computations using two-photon 3D holographic uncaging.

Journal: Cell reports

Authors' code: shulanx1/SynMultiplex (no license), shulanx1/stochasticH_python (no license), Zenodo 11304034 (CC-BY-4.0), Zenodo 11303742 (CC-BY-4.0), cortex-lab/KiloSort (GPL-2.0), Zenodo 11303939 (CC-BY-4.0), shulanx1/dynamic_clamp (no license), shulanx1/stochasticHH_python (no license)

Status: code verified, 189 files readable, 4 matches

[26601] doi:10.1016/j.heliyon.2024.e33761 [paper, repository]

The active components of Erzhi wan and their anti-Alzheimer's disease mechanisms determined by an integrative approach of network pharmacology, bioinformatics, molecular docking, and molecular dynamics simulation.

Journal: Heliyon

Authors' code: jerkwin/gmxtools (no license)

Status: code verified, 9 files readable, 2 matches

[26602] doi:10.1016/j.heliyon.2024.e33791 [paper, data]

IL-34 and its receptors as predictors of brain metastasis and prognosis in lung adenocarcinoma: Unveiling insights through bioinformatic and immunohistochemical investigations.

Journal: Heliyon

Status: data only, 1 dataset cited

[26603] doi:10.1016/j.isci.2024.110399 [paper]

Effect of excessive internet gaming on inhibitory control based on resting EEG and ERP.

Journal: iScience

Status: code on request

[26604] doi:10.1016/j.isci.2024.110400 [paper, repository]

Robustness and adaptability of sensorimotor skills in expert piano performance.

Journal: iScience

Authors' code: Zenodo 11178751 (CC-BY-4.0)

Status: code verified, 8 files readable

[26605] doi:10.1016/j.xgen.2024.100589 [paper, repository]

Evolutionary and biomedical implications of sex differences in the primate brain transcriptome.

Journal: Cell genomics

Authors' code: ardecasien/cayo_brain_transcriptome_sex (no license), Zenodo 11068290 (CC-BY-4.0), alexdobin/STAR (MIT)

Status: code verified, 405 files readable, 22 matches

[26606] doi:10.1038/s41467-024-49564-8 [paper, data]

Identification of the FSH-RH as the other gonadotropin-releasing hormone.

Journal: Nature communications

Status: data only, 1 dataset cited

[26607] doi:10.1038/s41598-024-65607-y [paper, data]

Predicting the bodily self in space and time.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26608] doi:10.1038/s42003-024-06446-5 [paper, repository]

Functional locus coeruleus imaging to investigate an ageing noradrenergic system.

Journal: Communications biology

Authors' code: OSF h5pgr (no license)

Status: code verified, 2 files readable, 1 match

[26609] doi:10.1111/jcpp.14028 [paper, data]

Prenatal maternal infections and early childhood developmental outcomes: analysis of linked administrative health data for Greater Glasgow &amp; Clyde, Scotland.

Journal: Journal of child psychology and psychiatry, and allied disciplines

Status: data only, 1 dataset cited

[26610] doi:10.1162/imag_a_00207 [paper, repository]

Response-locked theta dissociations reveal potential feedback signal following successful retrieval.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: longtermmemorylab.com (no license)

Status: code verified

[26611] doi:10.1371/journal.pbio.3002665 [paper, data]

From hidden hearing loss to supranormal auditory processing by neurotrophin 3-mediated modulation of inner hair cell synapse density.

Journal: PLoS biology

Status: data only, 1 dataset cited

[26612] doi:10.1371/journal.pcbi.1012190 [paper, repository]

The stabilized supralinear network accounts for the contrast dependence of visual cortical gamma oscillations.

Journal: PLoS computational biology

Authors' code: ahmadianlab/ssn_gamma (no license)

Status: code verified, 8 files readable, 10 matches

[26613] doi:10.1371/journal.pdig.0000422 [paper, repository]

Explainable deep learning for disease activity prediction in chronic inflammatory joint diseases.

Journal: PLOS digital health

Authors' code: uzh-dqbm-cmi/scqm (no license)

Status: code verified, 142 files readable, 3 matches

[26614] doi:10.3390/nu16132050 [paper, data]

Vitamin B6, B12, and Folate's Influence on Neural Networks in the UK Biobank Cohort.

Journal: Nutrients

Status: data only, 1 dataset cited

[26615] doi:10.3390/s24134167 [paper, data]

The Effect of Stress on a Personal Identification System Based on Electroencephalographic Signals.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Wednesday, 26 June 2024 (42 papers, 41 on this page)

[26616] doi:10.1002/alz.13915 [paper, repository]

An ANXA11 P93S variant dysregulates TDP-43 and causes corticobasal syndrome.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: NIH-CARD/ANXA11_novel_variant (no license)

Status: code verified, 2 files readable, 1 match

[26617] doi:10.1007/s00062-024-01432-0 [paper, repository]

Evaluation of Neonatal Cerebral Circulation Under Hypoxic Ischemic Risk Factors Based on Quantitative Analysis of Cerebral Veins with Magnetic Resonance Susceptibility Weighted Imaging.

Journal: Clinical neuroradiology

Authors' code: wkentaro/labelme (GPL-3.0)

Status: code verified, 211 files readable

[26618] doi:10.1016/j.celrep.2024.114380 [paper]

Cell-specific regulation of the circadian clock by BMAL1 in the paraventricular nucleus: Implications for regulation of systemic biological rhythms.

Journal: Cell reports

Status: code on request

[26619] doi:10.1016/j.cub.2024.05.068 [paper, repository]

Tonically active GABAergic neurons in the dorsal periaqueductal gray control instinctive escape in mice.

Journal: Current biology : CB

Authors' code: SWC-Advanced-Microscopy/BakingTray (LGPL-3.0), Zenodo 3631609 (LGPL-3.0), SainsburyWellcomeCentre/BakingTray (LGPL-3.0)

Status: code verified, 1,023 files readable, 4 matches

[26620] doi:10.1016/j.heliyon.2024.e33645 [paper, repository]

Understanding state-of-the-art situation of transport planning strategies in earthquake-prone areas by using AI-supported literature review methodology.

Journal: Heliyon

Authors' code: jerryjliu/llama_index (MIT), hwchase17/langchain (MIT)

Status: code verified, 2,376 files readable, 4 matches

[26621] doi:10.1016/j.xcrm.2024.101623 [paper]

Arrestin-3-assisted activation of JNK3 mediates dopaminergic behavioral sensitization.

Journal: Cell reports. Medicine

Status: code on request

[26622] doi:10.1016/j.xpro.2024.103157 [paper, repository]

Protocol for quantitative reconstruction of cell lineage using mosaic analysis with double markers in mice.

Journal: STAR protocols

Authors' code: supp:PMC11260041/mmc1.zip (no license)

Status: empty repository

[26623] doi:10.1038/s41380-024-02637-y [paper, data]

Social context and drug cues modulate inhibitory control in cocaine addiction: involvement of the STN evidenced through functional MRI.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[26624] doi:10.1038/s41386-024-01905-3 [paper, data]

VTA glutamatergic projections to the nucleus accumbens suppress psychostimulant-seeking behavior.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[26625] doi:10.1038/s41467-024-48829-6 [paper, repository]

Claustrum neurons projecting to the anterior cingulate restrict engagement during sleep and behavior.

Journal: Nature communications

Authors' code: Citrilab/Atlan_et_al_2024 (no license)

Status: code verified, 9 files readable, 2 matches

[26626] doi:10.1038/s41467-024-49268-z [paper, repository]

Divergent landscapes of A-to-I editing in postmortem and living human brain.

Journal: Nature communications

Authors' code: BreenMS/Living-Brain (no license)

Status: code verified, 3 files readable, 2 matches

[26627] doi:10.1038/s41467-024-49703-1 [paper, repository]

Uncovering 2-D toroidal representations in grid cell ensemble activity during 1-D behavior.

Journal: Nature communications

Authors' code: DiogoSantosPata/gridcells (no license), figshare 16764508 (CC0-1.0), erikher/Uncovering-spatial-representations-in-large-scale-recordings (MIT), Zenodo 10893952 (CC-BY-4.0)

Status: code verified, 26 files readable, 6 matches

[26628] doi:10.1038/s41467-024-49732-w [paper, repository]

Metabotropic signaling within somatostatin interneurons controls transient thalamocortical inputs during development.

Journal: Nature communications

Authors' code: Pouchelon-Lab/metabotropic_signaling (MIT), Zenodo 11074523 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[26629] doi:10.1038/s41467-024-49773-1 [paper, repository]

Microglia contribute to neuronal synchrony despite endogenous ATP-related phenotypic transformation in acute mouse brain slices.

Journal: Nature communications

Authors' code: isdneuroimaging/mmqt (BSD-3-Clause)

Status: code verified, 33 files readable

[26630] doi:10.1038/s41556-024-01446-3 [paper, data]

Loss of Kmt2c or Kmt2d drives brain metastasis via KDM6A-dependent upregulation of MMP3.

Journal: Nature cell biology

Status: data only, 2 datasets cited

[26631] doi:10.1038/s42003-024-06438-5 [paper, repository]

Individual characteristics outperform resting-state fMRI for the prediction of behavioral phenotypes.

Journal: Communications biology

Authors' code: omidvarnia/Dynamic_brain_connectivity_analysis (no license)

Status: code verified, 63 files readable, 16 matches

[26632] doi:10.1073/pnas.2320454121 [paper, repository]

Efficient models of cortical activity via local dynamic equilibria and coarse-grained interactions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Texense/NYU-EffiModel (GPL-2.0)

Status: code verified, 124 files readable

[26633] doi:10.1073/pnas.2402143121 [paper, repository]

Cholinergic macrophages promote the resolution of peritoneal inflammation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ChongEdwardWu/PNAS_2024_ChEM (no license)

Status: code verified, 16 files readable, 13 matches

[26634] doi:10.1073/pnas.2403333121 [paper, data]

Structural dynamics at cytosolic interprotomer interfaces control gating of a mammalian TRPM5 channel.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 24 datasets cited

[26635] doi:10.1093/braincomms/fcae207 [paper, data]

Evaluating the associations between intelligence quotient and multi-tissue proteome from the brain, CSF and plasma.

Journal: Brain communications

Status: data only, 1 dataset cited

[26636] doi:10.1098/rsos.240691 [paper, repository]

Applying a synergistic mindsets intervention to an esports context.

Journal: Royal Society open science

Authors' code: OSF kgdsx (no license), doi:10.6084/m9.figshare.c.7249302 (no license)

Status: code found, still to be checked

[26637] doi:10.1126/sciadv.adk1296 [paper, repository]

The annotation of &lt;i&gt;GBA1&lt;/i&gt; has been concealed by its protein-coding pseudogene &lt;i&gt;GBAP1&lt;/i&gt;.

Journal: Science advances

Authors' code: Jbrenton191/GBA_multimapping_2022 (no license), egustavsson/pipeline-ref-isoforms-ONT (no license), raquelgarza/GBA_snRNAseq_cutnrun_Gustavsson2022 (no license), egustavsson/GBA_GBAP1_manuscript (MIT), Zenodo 10514842 (CC-BY-4.0)

Status: code verified, 84 files readable, 21 matches

[26638] doi:10.1159/000539483 [paper, data]

Surgical Complications in Subthalamic Nucleus Deep Brain Stimulation for Parkinson's Disease: Experience in 800 Patients.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[26639] doi:10.1162/imag_a_00202 [paper]

Multiple focal pulvinar projection fields in the macaque cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[26640] doi:10.1162/imag_a_00204 [paper, repository]

GPT-based normative models of brain sMRI correlate with dimensional psychopathology.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: SergioLeonardoMendes/normative_psychiatry (MIT)

Status: code verified, 124 files readable, 1 match

[26641] doi:10.1162/imag_a_00205 [paper, repository]

The relationship between interhemispheric homotopic functional connectivity and left-right difference of intrahemispheric functional integration in the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: liang-xinyu/Homotopy-IntraLI-Pipeline (no license)

Status: code verified, 66 files readable, 1 match

[26642] doi:10.1162/imag_a_00208 [paper, repository]

Atlas for the Lateralized Visuospatial Attention Networks (ALANs): Insights from fMRI and network analyses.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: loiclabache (no license), loiclabache/ALANs_brainAtlas (MIT)

Status: code verified, 7 files readable, 3 matches

[26643] doi:10.1186/s12864-024-10556-z [paper, data]

Analysis of the aging-related biomarker in a nonhuman primate model using multilayer omics.

Journal: BMC genomics

Status: data only, 1 dataset cited

[26644] doi:10.1186/s13195-024-01513-9 [paper]

Diagnostic performance of plasma pTau₂₁₇, pTau₁₈₁, Aβ_1-42 and Aβ_1-40 in the LUMIPULSE automated platform for the detection of Alzheimer disease.

Journal: Alzheimer's research & therapy

Status: code on request

[26645] doi:10.12688/f1000research.150773.1 [paper, data]

Comparison of image quality between Deep learning image reconstruction and Iterative reconstruction technique for CT Brain- a pilot study.

Journal: F1000Research

Status: data only, 1 dataset cited

[26646] doi:10.1371/journal.pbio.3002713 [paper, repository]

Subpopulations of neurons in the perirhinal cortex enable both modality-specific and modality-invariant recognition of objects.

Journal: PLoS biology

Authors' code: LeeLab-SNU/Lim_Lee_2024 (no license), Zenodo 11218592 (CC-BY-4.0)

Status: code verified, 14 files readable, 4 matches

[26647] doi:10.1371/journal.pone.0306218 [paper, data]

Possible mechanisms to improve sleep spindles via closed loop stimulation during slow wave sleep: A computational study.

Journal: PloS one

Status: data only, 1 dataset cited

[26648] doi:10.1523/jneurosci.1757-23.2024 [paper, repository]

Seven Tesla Evidence for Columnar and Rostral-Caudal Organization of the Human Periaqueductal Gray Response in the Absence of Threat: A Working Memory Study.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Zenodo 15236635 (MIT), alexfischbach/local_csf_pipeline (MIT), Zenodo 15236634 (MIT)

Status: code verified, 25 files readable

[26649] doi:10.1523/jneurosci.1883-23.2024 [paper, repository]

Linking Cognitive Integrity to Working Memory Dynamics in the Aging Human Brain.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: DonnerLab/pymeg (no license), DonnerLab/meg-preproc (no license), DonnerLab/2024_Monov_WM-dynamics-in-the-aging-human-brain (no license)

Status: code verified, 175 files readable, 40 matches

[26650] doi:10.3389/fbioe.2024.1411680 [paper, repository]

ML-driven segmentation of microvascular features during histological examination of tissue-engineered vascular grafts.

Journal: Frontiers in bioengineering and biotechnology

Authors' code: ViacheslavDanilov/histology_segmentation (MIT), Zenodo 10838431 (CC-BY-4.0), Zenodo 10901377 (CC-BY-4.0)

Status: code verified, 30 files readable, 10 matches

[26651] doi:10.3389/fimmu.2024.1427200 [paper, data]

Single-cell transcriptomic analysis identifies downregulated phosphodiesterase 8B as a novel oncogene in IDH-mutant glioma.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[26652] doi:10.3389/fnins.2024.1384336 [paper, repository]

A lightweight data-driven spiking neuronal network model of <i>Drosophila</i> olfactory nervous system with dedicated hardware support.

Journal: Frontiers in neuroscience

Authors' code: tnanami/fly-olfactory-network-fpga (MIT)

Status: code verified, 28 files readable, 9 matches

[26653] doi:10.3389/fnins.2024.1411797 [paper, repository]

TractoSCR: a novel supervised contrastive regression framework for prediction of neurocognitive measures using multi-site harmonized diffusion MRI tractography.

Journal: Frontiers in neuroscience

Authors' code: pnlbwh/ukftractography (other)

Status: code verified, 97 files readable, 2 matches

[26654] doi:10.3389/fnins.2024.1421010 [paper, data]

EEG-based driving intuition and collision anticipation using joint temporal-frequency multi-layer dynamic brain network.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[26655] doi:10.3389/fonc.2024.1322795 [paper, data]

GQIcombi application to subdue glioma via differentiation therapy.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[26656] doi:10.3390/e26070545 [paper, repository]

A Dynamic Entropy Approach Reveals Reduced Functional Network Connectivity Trajectory Complexity in Schizophrenia.

Journal: Entropy (Basel, Switzerland)

Authors' code: davidblair8/Entropy-intro (no license)

Status: code verified, 117 files readable, 6 matches

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.