Every paper, by date: page 120

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 120 of 200: 26 June 2024 to 17 June 2024.

Wednesday, 26 June 2024 (42 papers, 1 on this page)

[26657] doi:10.3390/nano14131093 [paper, data]

Raman Spectroscopy Reveals Photobiomodulation-Induced α-Helix to β-Sheet Transition in Tubulins: Potential Implications for Alzheimer's and Other Neurodegenerative Diseases.

Journal: Nanomaterials (Basel, Switzerland)

Status: data only, 1 dataset cited

Tuesday, 25 June 2024 (37 papers)

[26658] doi:10.1007/s00401-024-02755-5 [paper, data]

Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APP<sup>V717I</sup> mutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[26659] doi:10.1007/s00406-024-01838-4 [paper, data]

Diagnostic value of regional homogeneity and fractional amplitude of low-frequency fluctuations in the classification of schizophrenia and bipolar disorders.

Journal: European archives of psychiatry and clinical neuroscience

Status: data only, 1 dataset cited

[26660] doi:10.1007/s12028-024-02031-0 [paper]

Arterial Spin Labeling Magnetic Resonance Imaging for Acute Disorders of Consciousness in the Intensive Care Unit.

Journal: Neurocritical care

Status: code on request

[26661] doi:10.1016/j.ajhg.2024.06.001 [paper, repository]

Splicing-specific transcriptome-wide association uncovers genetic mechanisms for schizophrenia.

Journal: American journal of human genetics

Authors' code: gxiaolab/SpliTWAS (no license)

Status: code verified, 5 files readable, 1 match

[26662] doi:10.1016/j.celrep.2024.114396 [paper]

Sensation and expectation are embedded in mouse motor cortical activity.

Journal: Cell reports

Status: code on request

[26663] doi:10.1038/s41467-024-49455-y [paper, repository]

Automated neuronal reconstruction with super-multicolour Tetbow labelling and threshold-based clustering of colour hues.

Journal: Nature communications

Authors' code: mleiwe/HyD_NonLinearCorrection (GPL-3.0), mleiwe/LinearUnmixing (GPL-3.0), mleiwe/ChromaticAberrationCorrection (GPL-3.0), mleiwe/dCrawler (GPL-3.0), mleiwe/QDyeFinder (GPL-3.0), mleiwe/ModellingSuperTetbow (GPL-3.0), Elsword016/Swc-plugins-for-Imaris-10 (no license), TakeshiImaiLab (no license), Zenodo 11233271 (CC-BY-4.0), Zenodo 11180569 (CC-BY-4.0), Zenodo 11180581 (CC-BY-4.0), Zenodo 11180583 (CC-BY-4.0), Zenodo 11232721 (CC-BY-4.0), Zenodo 11180589 (CC-BY-4.0), Zenodo 11180585 (CC-BY-4.0), Zenodo 11232963 (CC-BY-4.0), takeshiimailab/chromaticaberrationcorrection (GPL-3.0), takeshiimailab/hyd_nonlinearcorrection (GPL-3.0), takeshiimailab/linearunmixing (GPL-3.0), takeshiimailab/qdyefinder (GPL-3.0), takeshiimailab/dcrawler (GPL-3.0), takeshiimailab/linear-unmixing-qdye (no license), takeshiimailab/modellingsupertetbow (GPL-3.0)

Status: code verified, 499 files readable, 11 matches

[26664] doi:10.1038/s41467-024-49691-2 [paper, repository]

Overtone photothermal microscopy for high-resolution and high-sensitivity vibrational imaging.

Journal: Nature communications

Authors' code: buchenglab (no license)

Status: code verified

[26665] doi:10.1038/s41467-024-49712-0 [paper, repository]

Development of a genetically encoded sensor for probing endogenous nociceptin opioid peptide release.

Journal: Nature communications

Authors' code: patriarchilab/NOPLight (GPL-3.0)

Status: code verified, 58 files readable, 10 matches

[26666] doi:10.1038/s41531-024-00742-x [paper, repository]

Interpretable video-based tracking and quantification of parkinsonism clinical motor states.

Journal: NPJ Parkinson's disease

Authors' code: abbasilab/Video-Tracking-PD (CC-BY-NC-ND-4.0)

Status: code verified, 10 files readable, 5 matches

[26667] doi:10.1038/s41598-024-64704-2 [paper, repository]

Multi-scale entropy assessment of magnetoencephalography signals in schizophrenia.

Journal: Scientific reports

Authors' code: ejwolfson/MSE-cpl-code-public (no license)

Status: code verified, 2 files readable

[26668] doi:10.1038/s41598-024-65092-3 [paper, repository]

Deep learning-based localization algorithms on fluorescence human brain 3D reconstruction: a comparative study using stereology as a reference.

Journal: Scientific reports

Authors' code: lens-biophotonics/ZetaStitcher (GPL-3.0), curzio/BCFind-v2 (no license)

Status: code verified, 96 files readable, 7 matches

[26669] doi:10.1038/s41598-024-65405-6 [paper, repository]

Age-related changes in the susceptibility to visual illusions of size.

Journal: Scientific reports

Authors' code: OSF 2ryxj (no license)

Status: code verified, 1 file readable

[26670] doi:10.1038/s41598-024-65610-3 [paper, repository]

The zebrafish gut microbiome influences benzo[a]pyrene developmental neurobehavioral toxicity.

Journal: Scientific reports

Authors' code: kstagaman/sharpton-lab-dada2-pipeline (no license), aalexiev/BaP_16S (no license)

Status: code verified, 41 files readable, 17 matches

[26671] doi:10.1038/s41598-024-65631-y [paper, repository]

Towards biologically plausible model-based reinforcement learning in recurrent spiking networks by dreaming new experiences.

Journal: Scientific reports

Authors' code: cristianocapone/biodreaming (no license)

Status: code verified, 12 files readable, 1 match

[26672] doi:10.1038/s42003-024-06423-y [paper, data]

Hub stability in the calcium calmodulin-dependent protein kinase II.

Journal: Communications biology

Status: data only, 1 dataset cited

[26673] doi:10.1038/s44318-024-00156-8 [paper, data]

Physiological regulation of neuronal Wnt activity is essential for TDP-43 localization and function.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[26674] doi:10.1039/d4lc00107a [paper, repository]

A fluid-walled microfluidic platform for human neuron microcircuits and directed axotomy.

Journal: Lab on a chip

Authors' code: craggASAP/microfluid_axotomy (CC0-1.0), Zenodo 11148154 (CC-BY-4.0)

Status: code verified, 4 files readable

[26675] doi:10.1073/pnas.2400964121 [paper, repository]

Altered circadian rhythm, sleep, and <i>rhodopsin 7</i>-dependent shade preference during diapause in <i>Drosophila melanogaster</i>.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: craig-montell-lab/meyerhof-et-al.-2024- (no license), datadryad.org/stash/share/ggfdmv3caqkri0zhvidxaxbke3xf0-qbl746n3hmsze (no license)

Status: code verified, 48 files readable

[26676] doi:10.1073/pnas.2404925121 [paper, data]

Spike-timing-dependent plasticity induction reveals dissociable supplementary- and premotor-motor pathways to automatic imitation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26677] doi:10.1088/1361-6420/ad4f0a [paper, data]

Learning a stable approximation of an existing but unknown inverse mapping: application to the half-time circular Radon transform.

Journal: Inverse problems

Status: data only, 1 dataset cited

[26678] doi:10.1101/2024.06.23.600044 [paper, data]

Pronouns reactivate conceptual representations in human hippocampal neurons

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[26679] doi:10.1101/gr.278416.123 [paper, repository]

Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice.

Journal: Genome research

Authors' code: hansenlab/mdem_neuron_paper (no license)

Status: code verified, 30 files readable, 13 matches

[26680] doi:10.1111/jora.12993 [paper, data]

Transcendent thinking counteracts longitudinal effects of mid-adolescent exposure to community violence in the anterior cingulate cortex.

Journal: Journal of research on adolescence : the official journal of the Society for Research on Adolescence

Status: data only, 1 dataset cited

[26681] doi:10.1162/imag_a_00196 [paper, repository]

The position of visual word forms in the anatomical and representational space of visual categories in occipitotemporal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: translationalneuromodeling.org/tapas (no license)

Status: code verified

[26682] doi:10.1162/imag_a_00197 [paper, repository]

Anatomy-aware and acquisition-agnostic joint registration with SynthMorph.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: w3id.org/synthmorph (no license)

Status: code verified

[26683] doi:10.1186/s12864-024-10534-5 [paper, data]

Uncovering the ferroptosis related mechanism of laduviglusib in the cell-type-specific targets of the striatum in Huntington's disease.

Journal: BMC genomics

Status: data only, 1 dataset cited

[26684] doi:10.1186/s12974-024-03157-w [paper, repository]

Maternal SARS-CoV-2 impacts fetal placental macrophage programs and placenta-derived microglial models of neurodevelopment.

Journal: Journal of neuroinflammation

Authors' code: rbatorsky/covid-placenta-edlow (MIT)

Status: code verified, 15 files readable, 11 matches

[26685] doi:10.1371/journal.pbio.3002670 [paper, repository]

Low and high beta rhythms have different motor cortical sources and distinct roles in movement control and spatiotemporal attention.

Journal: PLoS biology

Authors' code: supp:PMC11198906/pbio.3002670.s015.py (no license)

Status: code verified, 1 file readable, 1 match

[26686] doi:10.1371/journal.pdig.0000539 [paper, data]

Detecting QT prolongation from a single-lead ECG with deep learning.

Journal: PLOS digital health

Status: data only, 1 dataset cited

[26687] doi:10.1371/journal.pone.0289384 [paper, data]

Registered report: Age-preserved semantic memory and the CRUNCH effect manifested as differential semantic control networks: An fMRI study.

Journal: PloS one

Status: data only, 1 dataset cited

[26688] doi:10.1371/journal.pone.0304765 [paper, data]

Prognostic value of combining 24-hour ASPECTS and hemoglobin to red cell distribution width ratio to the THRIVE score in predicting in-hospital mortality among ischemic stroke patients treated with intravenous thrombolysis.

Journal: PloS one

Status: data only, 1 dataset cited

[26689] doi:10.17912/micropub.biology.001204 [paper, repository]

Physical presence of chemical synapses is necessary for turning behavior of anterograde synaptic vesicles at the branch point of PLM neurons in <i>C. elegans</i>.

Journal: microPublication biology

Authors' code: amruta2612/Fiji-macros (no license)

Status: empty repository, 1 file readable

[26690] doi:10.3389/fnetp.2024.1397151 [paper, repository]

Pairing cellular and synaptic dynamics into building blocks of rhythmic neural circuits. A tutorial.

Journal: Frontiers in network physiology

Authors' code: jamesjscully/plant_paper (no license)

Status: code verified, 107 files readable, 3 matches

[26691] doi:10.3390/bioengineering11070647 [paper, repository]

Understanding the Temporal Dynamics of Accelerated Brain Aging and Resilient Brain Aging: Insights from Discriminative Event-Based Analysis of UK Biobank Data.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: EuroPOND/pyebm (GPL-3.0)

Status: code verified, 19 files readable, 2 matches

[26692] doi:10.3390/biomedicines12071404 [paper, data]

Graph-Based Electroencephalography Analysis in Tinnitus Therapy.

Journal: Biomedicines

Status: data only, 1 dataset cited

[26693] doi:10.3390/cancers16132319 [paper, repository]

Pro-Oxidant Auranofin and Glutathione-Depleting Combination Unveils Synergistic Lethality in Glioblastoma Cells with Aberrant Epidermal Growth Factor Receptor Expression.

Journal: Cancers

Authors' code: gccri.bishop-lab.uthscsa.edu/shiny/correlation-analyzer (no license)

Status: code found, still to be checked

[26694] doi:10.7554/elife.91928 [paper, repository]

Reconfigurations of cortical manifold structure during reward-based motor learning.

Journal: eLife

Authors' code: areshenk-rpackages/spdm (GPL-3.0)

Status: code verified, 40 files readable

Monday, 24 June 2024 (25 papers)

[26695] doi:10.1002/acn3.52134 [paper, repository]

Proteomic networks of gray and white matter reveal tissue-specific changes in human tauopathy.

Journal: Annals of clinical and translational neurology

Authors' code: ashlyngjohnson/grey_white_tauopathy (no license), edammer/CellTypeFET (MIT), edammer/GOparallel (MIT), edammer/parANOVA (MIT)

Status: code verified, 10 files readable, 5 matches

[26696] doi:10.1002/mrm.30200 [paper]

Accelerated 3D metabolite T&lt;sub&gt;1&lt;/sub&gt; mapping of the brain using variable-flip-angle SPICE.

Journal: Magnetic resonance in medicine

Status: code on request

[26697] doi:10.1016/j.ebiom.2024.105211 [paper]

Targeting histone deacetylase 6 (HDAC6) to enhance radiation therapy in meningiomas in a 2D and 3D in vitro study.

Journal: EBioMedicine

Status: data only

[26698] doi:10.1016/j.isci.2024.110352 [paper, repository]

A novel developmental critical period of orexinergic signaling in the primary visual thalamus.

Journal: iScience

Authors' code: madeleinea/KilosortPLX (no license)

Status: code verified, 68 files readable, 2 matches

[26699] doi:10.1016/j.isci.2024.110361 [paper, repository]

Transformation of spatial representations along hippocampal circuits.

Journal: iScience

Authors' code: neurodroid/haussmeister (no license), Zenodo 10366829 (CC-BY-4.0)

Status: code verified, 38 files readable

[26700] doi:10.1016/j.isci.2024.110362 [paper]

Understanding the effects of omega-3 fatty acid supplementation on the physical properties of brain lipid membranes.

Journal: iScience

Status: code on request

[26701] doi:10.1016/j.mex.2024.102788 [paper, repository]

Resource: A curated database of brain-related functional gene sets (Brain.GMT).

Journal: MethodsX

Authors' code: hagenaue/Brain_GMT (MIT), hagenaue/BrainInABlender (other), hagenaue/HDRF_MetaAnalysis_Downstream (no license)

Status: code verified, 41 files readable, 13 matches

[26702] doi:10.1016/j.neuron.2024.06.001 [paper, repository]

Individual thalamic inhibitory interneurons are functionally specialized toward distinct visual features.

Journal: Neuron

Authors' code: Zenodo 11354455 (BSD-3-Clause)

Status: code verified, 30 files readable

[26703] doi:10.1016/j.phro.2024.100602 [paper]

Prediction of radiologic outcome-optimized dose plans and post-treatment magnetic resonance images: A proof-of-concept study in breast cancer brain metastases treated with stereotactic radiosurgery.

Journal: Physics and imaging in radiation oncology

Status: code on request

[26704] doi:10.1038/s41467-024-48816-x [paper, repository]

Prefrontal coding of learned and inferred knowledge during REM and NREM sleep.

Journal: Nature communications

Authors' code: IdlingBrainUT/Abdou2024_NatureCommunications (no license)

Status: code verified, 36 files readable, 1 match

[26705] doi:10.1038/s41593-024-01652-0 [paper, repository]

Single-cell epigenomic reconstruction of developmental trajectories from pluripotency in human neural organoid systems.

Journal: Nature neuroscience

Authors' code: ratschlab/scim (LGPL-3.0), quadbiolab/organoid_epigenomics (no license), Zenodo 10964284 (CC-BY-4.0), quadbio/organoid_epigenomics (no license)

Status: code verified, 185 files readable, 28 matches

[26706] doi:10.1038/s41597-024-03510-x [paper, data]

Histological Hyperspectral Glioblastoma Dataset (HistologyHSI-GB).

Journal: Scientific data

Status: data only, 2 datasets cited

[26707] doi:10.1073/pnas.2306029121 [paper, data]

Auditory cortical regions show resting-state functional connectivity with the default mode-like network in echolocating bats.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[26708] doi:10.1073/pnas.2311893121 [paper, repository]

The neuron as a direct data-driven controller.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 11399185 (CC-BY-4.0)

Status: code verified, 22 files readable, 2 matches

[26709] doi:10.1111/acel.14230 [paper, repository]

An interpretable machine learning-based cerebrospinal fluid proteomics clock for predicting age reveals novel insights into brain aging.

Journal: Aging cell

Authors' code: wusm-neurology-batmanlab/CSF-Proteomics-Aging-Clocks (no license)

Status: code verified, 2 files readable, 1 match

[26710] doi:10.1162/imag_a_00188 [paper, repository]

Progression of white matter hyperintensities is related to blood pressure increases and global cognitive decline - A registered report.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: fBeyer89/VRF-and-progression-of-WMH (no license), fBeyer89/VRF-and-progression-of-WML (CC0-1.0)

Status: code verified, 29 files readable, 35 matches

[26711] doi:10.1162/imag_a_00198 [paper, repository]

Selective inference for fMRI cluster-wise analysis, issues, and recommendations for critical vector selection: A comment on Blain et al.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: alexblnn/Notip (no license)

Status: code verified, 25 files readable

[26712] doi:10.1162/imag_a_00199 [paper, repository]

Arithmetic in two languages: Localizing simple multiplication processing in the adult bilingual brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF z9ajt (no license)

Status: empty repository

[26713] doi:10.1371/journal.pone.0305853 [paper, data]

The bidirectional role of GABAA and GABAB receptors during the differentiation process of neural precursor cells of the subventricular zone.

Journal: PloS one

Status: data only, 1 dataset cited

[26714] doi:10.14336/ad.2024.0350 [paper, data]

APOE 5'UTR Methylation Pattern Analysis in Blood and Brain Tissue from Alzheimer's Disease Affected Patients.

Journal: Aging and disease

Status: data only, 1 dataset cited

[26715] doi:10.3389/fbinf.2024.1381540 [paper, repository]

The evolution of mammalian Rem2: unraveling the impact of purifying selection and coevolution on protein function, and implications for human disorders.

Journal: Frontiers in bioinformatics

Authors' code: veg/hyphy-analyses (MIT), sokrypton/ColabFold (MIT), aglucaci/AOC-REM2 (MIT), aglucaci/SPA-REM2 (GPL-3.0), observablehq.com/@aglucaci/structure-rem2 (no license)

Status: code verified, 99 files readable, 1 match

[26716] doi:10.3389/fimmu.2024.1397475 [paper, data]

Integrated analysis of single-cell sequencing and machine learning identifies a signature based on monocyte/macrophage hub genes to analyze the intracranial aneurysm associated immune microenvironment.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[26717] doi:10.3389/fnins.2024.1415167 [paper, data]

Washed microbiota transplantation improves sleep quality in patients with sleep disorder by the gut-brain axis.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[26718] doi:10.3389/fpsyt.2024.1395563 [paper, data]

Enhancing Alzheimer's disease diagnosis and staging: a multistage CNN framework using MRI.

Journal: Frontiers in psychiatry

Status: data only, 2 datasets cited

[26719] doi:10.3390/bioengineering11070643 [paper, repository]

Radiomics and Deep Features: Robust Classification of Brain Hemorrhages and Reproducibility Analysis Using a 3D Autoencoder Neural Network.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: MASOUD-AJUMS/Reproducible-Brain-Hemorrhage-Classification-via-Radiomics-and-Deep-Features.git_ (no license)

Status: dead link

Sunday, 23 June 2024 (3 papers)

[26720] doi:10.3390/biology13070464 [paper, data]

Modification of Keratin Integrations and the Associated Morphogenesis in Frizzling Chicken Feathers.

Journal: Biology

Status: data only, 1 dataset cited

[26721] doi:10.3390/biomedicines12071395 [paper, repository]

Brain Tumor MRI Classification Using a Novel Deep Residual and Regional CNN.

Journal: Biomedicines

Authors' code: MumtazZahoor1/Res-BRNet- (no license)

Status: code verified, 4 files readable, 1 match

[26722] doi:10.3390/biomimetics9070380 [paper, data]

On Effect of Chloroform on Electrical Activity of Proteinoids.

Journal: Biomimetics (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 22 June 2024 (11 papers)

[26723] doi:10.1016/j.isci.2024.110348 [paper, repository]

Microbiome alterations are associated with apolipoprotein E mutation in <i>Octodon degus</i> and humans with Alzheimer's disease.

Journal: iScience

Authors' code: gzampieri/Degu_gut_microbiome (no license), benjjneb/dada2 (LGPL-3.0)

Status: code verified, 36 files readable, 5 matches

[26724] doi:10.1016/j.isci.2024.110355 [paper, repository]

Distinct transcriptional programs define a heterogeneous neuronal ensemble for social interaction.

Journal: iScience

Authors' code: nickfrostneuro/single-cell (no license)

Status: code verified, 26 files readable, 6 matches

[26725] doi:10.1038/s41467-024-49538-w [paper, repository]

Distinct basal ganglia contributions to learning from implicit and explicit value signals in perceptual decision-making.

Journal: Nature communications

Authors' code: OSF q29uf (no license)

Status: code verified, 49 files readable, 7 matches

[26726] doi:10.1038/s41597-024-03501-y [paper, repository]

An EEG &amp; eye-tracking dataset of ALS patients &amp; healthy people during eye-tracking-based spelling system usage.

Journal: Scientific data

Authors' code: txdat/bci-motor-imagery (MIT), dangkh/VINIF_IdentifyPerson (no license)

Status: code verified, 45 files readable, 4 matches

[26727] doi:10.1038/s41598-024-64240-z [paper, repository]

Uncertainty of treatment efficacy moderates placebo effects on reinforcement learning.

Journal: Scientific reports

Authors' code: CCS-Lab/hBayesDM (GPL-3.0), ihrke/2016-placebo-tdcs-study (CC0-1.0)

Status: code verified, 398 files readable, 2 matches

[26728] doi:10.1038/s41598-024-64872-1 [paper, data]

Metabolic flexibility ensures proper neuronal network function in moderate neuroinflammation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26729] doi:10.1038/s42003-024-06415-y [paper, repository]

Circadian rapid eye movement sleep expression is associated with brain microstructural integrity in older adults.

Journal: Communications biology

Authors' code: Zenodo 8434929 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[26730] doi:10.1038/s42003-024-06439-4 [paper, repository]

Neural connectivity patterns explain why adolescents perceive the world as moving slow.

Journal: Communications biology

Authors' code: OSF m7v2p (no license)

Status: code verified, 25 files readable, 14 matches

[26731] doi:10.1093/nc/niae028 [paper, data]

Tracking rivalry with neural rhythms: multivariate SSVEPs reveal perception during binocular rivalry.

Journal: Neuroscience of consciousness

Status: data only, 3 datasets cited

[26732] doi:10.1186/s13040-024-00370-4 [paper, repository]

Saliency-driven explainable deep learning in medical imaging: bridging visual explainability and statistical quantitative analysis.

Journal: BioData mining

Authors' code: yusufbrima/XAIBiomedical (Apache-2.0)

Status: code verified, 13 files readable, 10 matches

[26733] doi:10.1186/s13195-024-01492-x [paper, data]

Age, sex and Alzheimer's disease: a longitudinal study of 3xTg-AD mice reveals sex-specific disease trajectories and inflammatory responses mirrored in postmortem brains from Alzheimer's patients.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

Friday, 21 June 2024 (38 papers)

[26734] doi:10.1016/j.ajhg.2024.05.023 [paper, data]

Truncated variants of MAGEL2 are involved in the etiologies of the Schaaf-Yang and Prader-Willi syndromes.

Journal: American journal of human genetics

Status: data only, 1 dataset cited

[26735] doi:10.1016/j.bbih.2024.100814 [paper, repository]

Absence of association between maternal adverse events and long-term gut microbiome outcomes in the Australian autism biobank.

Journal: Brain, behavior, & immunity - health

Authors' code: geronimp/enrichM (GPL-3.0)

Status: code verified, 36 files readable

[26736] doi:10.1016/j.biopsych.2024.06.011 [paper, repository]

Decoding Early Psychoses: Unraveling Stable Microstructural Features Associated With Psychopathology Across Independent Cohorts.

Journal: Biological psychiatry

Authors' code: haleyrwang/CCNL_DecodingEP (MIT), MICA-MNI/ENIGMA (BSD-3-Clause)

Status: code verified, 131 files readable, 1 match

[26737] doi:10.1016/j.ebiom.2024.105201 [paper, repository]

The neurophysiological brain-fingerprint of Parkinson's disease.

Journal: EBioMedicine

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), jasondsc/PDneuralfingerprinting (Apache-2.0)

Status: code verified, 62 files readable, 6 matches

[26738] doi:10.1016/j.isci.2024.110340 [paper, repository]

Atypical cadherin, Fat2, regulates axon terminal organization in the developing <i>Drosophila</i> olfactory receptor neurons.

Journal: iScience

Authors' code: volkanlab/Vien_fat2_iScience2024 (no license)

Status: code verified, 2 files readable

[26739] doi:10.1016/j.isci.2024.110341 [paper, data]

Reactivating cue approached positive personality traits during sleep promotes positive self-referential processing.

Journal: iScience

Status: data only, 1 dataset cited

[26740] doi:10.1016/j.isci.2024.110342 [paper]

Altered neuronal lactate dehydrogenase A expression affects cognition in a sex- and age-dependent manner.

Journal: iScience

Status: code on request

[26741] doi:10.1016/j.patter.2024.101007 [paper, repository]

A hierarchically annotated dataset drives tangled filament recognition in digital neuron reconstruction.

Journal: Patterns (New York, N.Y.)

Authors' code: Brainsmatics/HiNeuron (no license)

Status: code verified, 9 files readable, 3 matches

[26742] doi:10.1038/s41467-024-49596-0 [paper, data]

Adult microglial TGFβ1 is required for microglia homeostasis via an autocrine mechanism to maintain cognitive function in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[26743] doi:10.1038/s41526-024-00411-6 [paper]

Physical exercise restores adult neurogenesis deficits induced by simulated microgravity.

Journal: NPJ microgravity

Status: data only

[26744] doi:10.1038/s41592-024-02316-4 [paper, repository]

Deciphering spatial domains from spatial multi-omics with SpatialGlue.

Journal: Nature methods

Authors' code: JinmiaoChenLab/SpatialGlue (AGPL-3.0), JinmiaoChenLab/SpatialGlue_3M (no license), JinmiaoChenLab/SpatialGlue_notebook (no license)

Status: code verified, 37 files readable, 18 matches

[26745] doi:10.1038/s41593-024-01684-6 [paper, data]

Derivation and transcriptional reprogramming of border-forming wound repair astrocytes after spinal cord injury or stroke in mice.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[26746] doi:10.1038/s41746-024-01153-1 [paper, repository]

Validation and application of computer vision algorithms for video-based tremor analysis.

Journal: NPJ digital medicine

Authors' code: peach-lucien/PoET (MIT)

Status: code verified, 20 files readable, 3 matches

[26747] doi:10.1038/s43587-024-00640-0 [paper, repository]

Single-nucleus sequencing reveals enriched expression of genetic risk factors in extratelencephalic neurons sensitive to degeneration in ALS.

Journal: Nature aging

Authors' code: LieberInstitute/HumanPilot (Artistic-2.0), LieberInstitute/spatialLIBD (Artistic-2.0)

Status: code verified, 194 files readable

[26748] doi:10.1038/s44318-024-00145-x [paper, repository]

Dynamin 1xA interacts with Endophilin A1 via its spliced long C-terminus for ultrafast endocytosis.

Journal: The EMBO journal

Authors' code: shigekiwatanabe/SynapsEM (no license), imotolab-neuroem/sted_image_analysis_package_public_v1.4 (no license)

Status: code verified, 98 files readable, 2 matches

[26749] doi:10.1038/s44320-024-00050-9 [paper, repository]

µPhos: a scalable and sensitive platform for high-dimensional phosphoproteomics.

Journal: Molecular systems biology

Authors' code: vdemichev/DiaNN (other)

Status: code verified, 441 files readable, 2 matches

[26750] doi:10.1073/pnas.2314795121 [paper, repository]

Near-infrared nanosensors enable optical imaging of oxytocin with selectivity over vasopressin in acute mouse brain slices.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jtdbod/Nanosensor-Brain-Imaging (MIT)

Status: code verified, 29 files readable

[26751] doi:10.1126/sciadv.adj9173 [paper, repository]

Harmonized cross-species cell atlases of trigeminal and dorsal root ganglia.

Journal: Science advances

Authors' code: Renthal-Lab/harmonized_atlas (no license)

Status: code verified, 15 files readable, 18 matches

[26752] doi:10.1126/sciadv.ado1583 [paper, data]

<i>MOXD1</i> is a lineage-specific gene and a tumor suppressor in neuroblastoma.

Journal: Science advances

Status: data only, 2 datasets cited

[26753] doi:10.1162/imag_a_00189 [paper, repository]

Do try this at home: Age prediction from sleep and meditation with large-scale low-cost mobile EEG.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: coffeine-labs/coffeine (MIT), meeg-ml-benchmarks/brain-age-benchmark-paper (BSD-3-Clause)

Status: code verified, 44 files readable, 5 matches

[26754] doi:10.1162/imag_a_00200 [paper]

Chemogenetic inhibition of dopaminergic neurons reduces stimulus-induced dopamine release, thereby altering the hemodynamic response function in the prefrontal cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[26755] doi:10.1186/s10194-024-01812-4 [paper, data]

Exploring potential neuroimaging biomarkers for the response to non-steroidal anti-inflammatory drugs in episodic migraine.

Journal: The journal of headache and pain

Status: data only, 1 dataset cited

[26756] doi:10.1186/s11689-024-09553-w [paper, data]

Volumetric brain reductions in adult patients with phenylketonuria and their relationship with blood phenylalanine levels.

Journal: Journal of neurodevelopmental disorders

Status: data only, 1 dataset cited

[26757] doi:10.1371/journal.pone.0299677 [paper, data]

An extremely fast neural mechanism to detect emotional visual stimuli: A two-experiment study.

Journal: PloS one

Status: data only, 1 dataset cited

[26758] doi:10.1371/journal.pone.0303596 [paper, data]

Exploring oculomotor functions in a pilot study with healthy controls: Insights from eye-tracking and fMRI.

Journal: PloS one

Status: data only, 1 dataset cited

[26759] doi:10.1371/journal.pone.0303699 [paper, repository]

A machine learning approach for differentiating bipolar disorder type II and borderline personality disorder using electroencephalography and cognitive abnormalities.

Journal: PloS one

Authors' code: mohammadjnazari/bipolar-borderline-classification (no license)

Status: code verified, 8 files readable, 2 matches

[26760] doi:10.1371/journal.pone.0303796 [paper, data]

Neural correlates underlying local and global processing during visual search across adulthood.

Journal: PloS one

Status: data only, 1 dataset cited

[26761] doi:10.1371/journal.pone.0306006 [paper, repository]

The Advanced BRain Imaging on ageing and Memory (ABRIM) data collection: Study design, data processing, and rationale.

Journal: PloS one

Authors' code: Donders-Institute/MP2RAGE-related-scripts (GPL-3.0)

Status: code verified, 39 files readable, 4 matches

[26762] doi:10.3389/fendo.2024.1302672 [paper, data]

Characterization of the somatostatin system in tilapia: implications for growth and reproduction.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[26763] doi:10.3389/fnhum.2024.1356483 [paper, repository]

Modelling individual differences in reading using an optimised MikeNet simulator: the impact of reading instruction.

Journal: Frontiers in human neuroscience

Authors' code: yaningchang/Chang_et_al_RI_ID_Paper_for_FHN (no license)

Status: code verified, 9 files readable, 1 match

[26764] doi:10.3389/fnhum.2024.1412307 [paper, data]

Neural correlates of motor imagery and execution in real-world dynamic behavior: evidence for similarities and differences.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[26765] doi:10.3389/fnhum.2024.1430086 [paper, data]

EEGGAN-Net: enhancing EEG signal classification through data augmentation.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[26766] doi:10.34133/cbsystems.0118 [paper]

Neural Correlates of Motor/Tactile Imagery and Tactile Sensation in a BCI paradigm: A High-Density EEG Source Imaging Study.

Journal: Cyborg and bionic systems (Washington, D.C.)

Status: code on request

[26767] doi:10.3758/s13428-024-02449-6 [paper, data]

Sheep (Ovis aries) training protocol for voluntary awake and unrestrained structural brain MRI acquisitions.

Journal: Behavior research methods

Status: data only, 4 datasets cited

[26768] doi:10.5114/ceji.2024.140651 [paper, data]

CSF3R as a potential prognostic biomarker and immunotherapy target in glioma.

Journal: Central-European journal of immunology

Status: data only, 1 dataset cited

[26769] doi:10.7554/elife.88985 [paper, data]

The Alk receptor tyrosine kinase regulates Sparkly, a novel activity regulating neuropeptide precursor in the <i>Drosophila</i> central nervous system.

Journal: eLife

Status: data only, 1 dataset cited

[26770] doi:10.7554/elife.94547 [paper, data]

The non-mitotic role of HMMR in regulating the localization of TPX2 and the dynamics of microtubules in neurons.

Journal: eLife

Status: data only, 1 dataset cited

[26771] doi:10.7554/elife.96876 [paper, data]

&lt;i&gt;Drosophila&lt;/i&gt; medulla neuroblast termination via apoptosis, differentiation, and gliogenic switch is scheduled by the depletion of the neuroepithelial stem cell pool.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 20 June 2024 (25 papers)

[26772] doi:10.1021/jacsau.4c00311 [paper, data]

Cyclic Peptides KS-133 and KS-487 Multifunctionalized Nanoparticles Enable Efficient Brain Targeting for Treating Schizophrenia.

Journal: JACS Au

Status: data only, 1 dataset cited

[26773] doi:10.1038/s41467-024-48344-8 [paper, data]

Orb2 enables rare-codon-enriched mRNA expression during Drosophila neuron differentiation.

Journal: Nature communications

Status: data only, 1 dataset cited

[26774] doi:10.1038/s41467-024-48905-x [paper, repository]

BiœmuS: A new tool for neurological disorders studies through real-time emulation and hybridization using biomimetic Spiking Neural Network.

Journal: Nature communications

Authors' code: Ceramic-Blue-Tim/bioemus (GPL-3.0)

Status: code verified, 96 files readable, 12 matches

[26775] doi:10.1038/s41467-024-48926-6 [paper, data]

Gliovascular transcriptional perturbations in Alzheimer's disease reveal molecular mechanisms of blood brain barrier dysfunction.

Journal: Nature communications

Status: data only, 5 datasets cited

[26776] doi:10.1038/s41467-024-49577-3 [paper, data]

Sensory ASIC3 channel exacerbates psoriatic inflammation via a neurogenic pathway in female mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[26777] doi:10.1038/s41467-024-49652-9 [paper, repository]

Hippocampal and orbitofrontal neurons contribute to complementary aspects of associative structure.

Journal: Nature communications

Authors' code: OSF ysnqt (no license)

Status: code verified, 250 files readable, 5 matches

[26778] doi:10.1038/s41514-024-00151-7 [paper]

Nodal degree centrality in the default mode-like network of the TgF344-AD Alzheimer's disease rat model as a measure of early network alterations.

Journal: npj aging

Status: code on request

[26779] doi:10.1038/s41598-024-61452-1 [paper, data]

Deep Ensemble learning and quantum machine learning approach for Alzheimer's disease detection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[26780] doi:10.1038/s41598-024-62820-7 [paper]

In vivo brain estrogen receptor density by neuroendocrine aging and relationships with cognition and symptomatology.

Journal: Scientific reports

Status: code on request

[26781] doi:10.1038/s41598-024-65203-0 [paper, repository]

Electrical impedance tomography provides information of brain injury during total aortic arch replacement through its correlation with relative difference of neurological biomarkers.

Journal: Scientific reports

Authors' code: OSF ucbd2 (no license)

Status: code found, still to be checked

[26782] doi:10.1038/s42003-024-06444-7 [paper, repository]

Speech prosody enhances the neural processing of syntax.

Journal: Communications biology

Authors' code: figshare 23609505 (CC-BY-4.0)

Status: code verified, 5 files readable, 2 matches

[26783] doi:10.1038/s44321-024-00091-5 [paper]

Minimally-invasive implantable device enhances brain cancer suppression.

Journal: EMBO molecular medicine

Status: data only

[26784] doi:10.1101/2024.06.20.599815 [paper, data]

An Open-Source Deep Learning-Based Toolbox for Automated Auditory Brainstem Response Analyses (ABRA)

Journal: bioRxiv (preprint)

Status: data only, 4 datasets cited

[26785] doi:10.1162/imag_a_00194 [paper, repository]

When spatial attention cannot be divided: Quadrantic enhancement of early visual processing across task-Relevant and irrelevant locations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: mert-ozkan/multifocal_attention (no license)

Status: code verified, 2 files readable, 2 matches

[26786] doi:10.1186/s13024-024-00735-7 [paper, data]

Mis-localization of endogenous TDP-43 leads to ALS-like early-stage metabolic dysfunction and progressive motor deficits.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[26787] doi:10.1186/s13041-024-01112-7 [paper, repository]

Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.

Journal: Molecular brain

Authors' code: Zenodo 1400710 (MIT), ftp.ebi.ac.uk/pub/databases (no license), Zenodo 10480924 (MIT), Zenodo 10481313 (MIT), lasseignelab/230227_EJ_MouseBrainIsoDiv (MIT), nf-core/rnaseq (MIT)

Status: code verified, 101 files readable, 11 matches

[26788] doi:10.1186/s13059-024-03305-8 [paper, repository]

Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons.

Journal: Genome biology

Authors' code: f-hamidlab/factR2 (Apache-2.0), f-hamidlab/Zhuravskaya-ASNMD (no license)

Status: code verified, 49 files readable, 20 matches

[26789] doi:10.1371/journal.pbio.3002647 [paper, repository]

Morphometric brain organization across the human lifespan reveals increased dispersion linked to cognitive performance.

Journal: PLoS biology

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), weiliao81/MSN_Development (no license), Zenodo 10977355 (CC-BY-4.0)

Status: code verified, 69 files readable, 2 matches

[26790] doi:10.1371/journal.pone.0300168 [paper, data]

FABP5-binding lipids regulate autophagy in differentiated SH-SY5Y cells.

Journal: PloS one

Status: data only, 1 dataset cited

[26791] doi:10.1371/journal.pone.0304076 [paper, repository]

A neural network model for online one-shot storage of pattern sequences.

Journal: PloS one

Authors' code: MelJan/PyDeep (no license), MelJan/OneShotHippocampus (GPL-3.0)

Status: code verified, 237 files readable, 7 matches

[26792] doi:10.1371/journal.pone.0304832 [paper, repository]

Integrate-and-fire-type models of the lateral superior olive.

Journal: PloS one

Authors' code: pinkbox-models (no license)

Status: code verified

[26793] doi:10.3389/fgene.2024.1377237 [paper, data]

How does the age of control individuals hinder the identification of target genes for Huntington's disease?

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[26794] doi:10.3389/fnins.2024.1371103 [paper, repository]

NoC simulation steered by NEST: McAERsim and a Noxim patch.

Journal: Frontiers in neuroscience

Authors' code: mrobens/nenocsi-mcaersim (no license)

Status: code verified, 86 files readable, 9 matches

[26795] doi:10.3389/fphar.2024.1415844 [paper, data]

Research on the anti-aging mechanisms of <i>Panax ginseng</i> extract in mice: a gut microbiome and metabolomics approach.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[26796] doi:10.7554/elife.93325 [paper, repository]

Spatial and temporal pattern of structure-function coupling of human brain connectome with development.

Journal: eLife

Authors' code: BMHLab/AHBAprocessing (no license), scikit-learn.org (no license), FelixFengCN/SC-FC-coupling-development (no license)

Status: code verified, 388 files readable, 4 matches

Wednesday, 19 June 2024 (25 papers)

[26797] doi:10.1007/s11222-024-10446-0 [paper, repository]

A Bayesian multilevel model for populations of networks using exponential-family random graphs.

Journal: Statistics and computing

Authors' code: brieuclehmann/multibergm-scripts (no license)

Status: code verified, 16 files readable, 2 matches

[26798] doi:10.1016/j.isci.2024.110308 [paper, data]

Loss of the polarity protein Par3 promotes dendritic spine neoteny and enhances learning and memory.

Journal: iScience

Status: code on request, 1 dataset cited

[26799] doi:10.1038/s41467-024-49470-z [paper, repository]

A spatial perturbation framework to validate implantation of the epileptogenic zone.

Journal: Nature communications

Authors' code: Lab-Frauscher/Spike-Gamma (no license), Zenodo 11237651 (CC-BY-4.0), lab-frauscher/spf (MIT)

Status: code verified, 29 files readable, 21 matches

[26800] doi:10.1038/s41467-024-49471-y [paper, data]

Structural insights into GABA&lt;sub&gt;A&lt;/sub&gt; receptor potentiation by Quaalude.

Journal: Nature communications

Status: data only, 2 datasets cited

[26801] doi:10.1038/s41467-024-49615-0 [paper, repository]

A prefrontal motor circuit initiates persistent movement.

Journal: Nature communications

Authors' code: ywang2822/Multi_Lick_ports_behavioral_setup (no license), nurahmadi/BAKS (no license), Zenodo 7953792 (CC-BY-4.0)

Status: code verified, 24 files readable, 9 matches

[26802] doi:10.1038/s41586-024-07528-4 [paper, repository]

Krause corpuscles are genital vibrotactile sensors for sexual behaviours.

Journal: Nature

Authors' code: JaneliaSciComp/JRCLUST (Apache-2.0), NeuronQi/Krause_corpuscle (no license)

Status: code verified, 367 files readable, 1 match

[26803] doi:10.1038/s41598-024-64919-3 [paper, data]

Optimizing EEG ICA decomposition with data cleaning in stationary and mobile experiments.

Journal: Scientific reports

Status: data only, 4 datasets cited

[26804] doi:10.1038/s41598-024-65078-1 [paper, repository]

Phylogeny, envenomation syndrome, and membrane permeabilising venom produced by Australia's electric caterpillar Comana monomorpha.

Journal: Scientific reports

Authors' code: TransDecoder/TransDecoder (BSD-3-Clause)

Status: code verified, 60 files readable

[26805] doi:10.1038/s42003-024-06436-7 [paper, repository]

Population-level normative models reveal race- and socioeconomic-related variability in cortical thickness of threat neurocircuitry.

Journal: Communications biology

Authors' code: nateharnett/ABCD_BrainDeviation_Analysis (no license)

Status: code verified, 3 files readable, 2 matches

[26806] doi:10.1098/rsob.240113 [paper, repository]

Altered socio-affective communication and amygdala development in mice with protocadherin10-deficient interneurons.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7262716 (no license)

Status: code found, still to be checked

[26807] doi:10.1098/rsos.240626 [paper, data]

Cue-based modulation of pain stimulus expectation: do ongoing oscillations reflect changes in pain perception? A registered report.

Journal: Royal Society open science

Status: data only, 2 datasets cited

[26808] doi:10.1177/0271678x241262583 [paper]

The relative brain signal variability increases in the behavioral variant of frontotemporal dementia and Alzheimer's disease but not in schizophrenia.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: code on request

[26809] doi:10.1186/s12993-024-00240-3 [paper, data]

Transcriptome analysis identifies an ASD-Like phenotype in oligodendrocytes and microglia from C58/J amygdala that is dependent on sex and sociability.

Journal: Behavioral and brain functions : BBF

Status: data only, 1 dataset cited

[26810] doi:10.1186/s13063-024-08198-3 [paper]

Effectiveness of repetitive transcranial magnetic stimulation for insomnia disorder on fear memory extinction: study protocol for a randomised controlled trial.

Journal: Trials

Status: code on request

[26811] doi:10.1186/s13195-024-01496-7 [paper]

Associations of computer gaming with incident dementia, cognitive functions, and brain structure: a prospective cohort study and Mendelian randomization analysis.

Journal: Alzheimer's research & therapy

Status: code on request

[26812] doi:10.1186/s41016-024-00371-6 [paper, data]

Knockdown of ATRX enhances radiosensitivity in glioblastoma.

Journal: Chinese neurosurgical journal

Status: data only, 1 dataset cited

[26813] doi:10.1523/jneurosci.0298-23.2024 [paper]

Cortical Networks Relating to Arousal Are Differentially Coupled to Neural Activity and Hemodynamics.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[26814] doi:10.3389/fnagi.2024.1383163 [paper, repository]

In-vivo neuronal dysfunction by Aβ and tau overlaps with brain-wide inflammatory mechanisms in Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Authors' code: neuropm-lab.com/publication-codes.html (no license)

Status: code verified

[26815] doi:10.3389/fnmol.2024.1391189 [paper, data]

Novel insights into STIM1's role in store-operated calcium entry and its implications for T-cell mediated inflammation in trigeminal neuralgia.

Journal: Frontiers in molecular neuroscience

Status: data only, 2 datasets cited

[26816] doi:10.3390/ijms25126725 [paper, data]

Combined Ionizing Radiation Exposure by Gamma Rays and Carbon-12 Nuclei Increases Neurotrophic Factor Content and Prevents Age-Associated Decreases in the Volume of the Sensorimotor Cortex in Rats.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[26817] doi:10.3390/jcm13123585 [paper, repository]

Working Memory Recovery in Adolescents with Concussion: Longitudinal fMRI Study.

Journal: Journal of clinical medicine

Authors' code: fsl.fmrib.ox.ac.uk/fsl/fslwiki (no license)

Status: code verified

[26818] doi:10.3390/nu16121950 [paper, data]

Alignment of Consumers' Expected Brain Benefits from Food and Supplements with Measurable Cognitive Performance Tests.

Journal: Nutrients

Status: data only, 1 dataset cited

[26819] doi:10.3390/s24123968 [paper, repository]

Multiclass Classification of Visual Electroencephalogram Based on Channel Selection, Minimum Norm Estimation Algorithm, and Deep Network Architectures.

Journal: Sensors (Basel, Switzerland)

Authors' code: Tatyvelu/EEG-Visual-Multiclass-Classification (CC0-1.0)

Status: empty repository, 2 files readable

[26820] doi:10.3390/s24123973 [paper, data]

Evaluating the Electroencephalographic Signal Quality of an In-Ear Wearable Device.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[26821] doi:10.7554/elife.91398 [paper, repository]

Machine learning of dissection photographs and surface scanning for quantitative 3D neuropathology.

Journal: eLife

Authors' code: mgh-lemon/elife-data (CC-BY-NC-ND-4.0), bbillot/synthseg (Apache-2.0)

Status: code verified, 50 files readable, 7 matches

Tuesday, 18 June 2024 (35 papers)

[26822] doi:10.1002/advs.202304687 [paper, data]

Cordycepin Modulates Microglial M2 Polarization Coupled with Mitochondrial Metabolic Reprogramming by Targeting HKII and PDK2.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[26823] doi:10.1016/j.celrep.2024.114376 [paper]

Transcriptional determinism and stochasticity contribute to the complexity of autism-associated SHANK family genes.

Journal: Cell reports

Status: code on request

[26824] doi:10.1016/j.dcn.2024.101408 [paper, repository]

Transparency and reproducibility in the Adolescent Brain Cognitive Development (ABCD) study.

Journal: Developmental cognitive neuroscience

Authors' code: Daniel-Adan-Lopez/ABCD_Transparency_Reproducibility (no license)

Status: empty repository, 1 file readable

[26825] doi:10.1016/j.heliyon.2024.e33191 [paper, data]

The analysis of aerobics intelligent fitness system for neurorobotics based on big data and machine learning.

Journal: Heliyon

Status: data only, 1 dataset cited

[26826] doi:10.1016/j.isci.2024.110245 [paper]

Blockade of mesenteric and omental adipose tissue sensory neurons improves cardiac remodeling through sympathetic pathway.

Journal: iScience

Status: code on request

[26827] doi:10.1038/s41467-024-49299-6 [paper, repository]

Traumatic brain injury promotes neurogenesis at the cost of astrogliogenesis in the adult hippocampus of male mice.

Journal: Nature communications

Authors' code: Zenodo 10829090 (CC-BY-4.0), Zenodo 10777580 (CC-BY-4.0), araboapresyan/rna_velocity_analysis (no license)

Status: code verified, 9 files readable, 8 matches

[26828] doi:10.1038/s41467-024-49396-6 [paper, repository]

PIP&lt;sub&gt;2&lt;/sub&gt; modulates TRPC3 activity via TRP helix and S4-S5 linker.

Journal: Nature communications

Authors' code: medunigraz/scana (GPL-3.0), Zenodo 11203604 (CC-BY-4.0)

Status: code verified, 18 files readable, 1 match

[26829] doi:10.1038/s41467-024-49430-7 [paper, repository]

Genetic influences on brain and cognitive health and their interactions with cardiovascular conditions and depression.

Journal: Nature communications

Authors' code: peterzhukovsky/imaging_genetics (GPL-3.0), Zenodo 10904367 (CC-BY-4.0)

Status: code verified, 46 files readable, 8 matches

[26830] doi:10.1038/s41467-024-49524-2 [paper, repository]

Disruption of myelin structure and oligodendrocyte maturation in a macaque model of congenital Zika infection.

Journal: Nature communications

Authors' code: Zenodo 10998903 (CC-BY-4.0), Zenodo 10998921 (CC-BY-4.0), lwhitmore/tisoncik-go_zika_nhp_bulkrnaseq_fetalbrain (no license), lwhitmore/tisoncik-go_zika_nhp_geomx_fetalbrain (no license)

Status: code verified, 9 files readable, 3 matches

[26831] doi:10.1038/s41467-024-49541-1 [paper, repository]

Intracranial EEG signals disentangle multi-areal neural dynamics of vicarious pain perception.

Journal: Nature communications

Authors' code: Huixin-Tan/iEEG_empathy (no license)

Status: code verified, 5 files readable, 4 matches

[26832] doi:10.1038/s41467-024-49592-4 [paper, repository]

Type-printable photodetector arrays for multichannel meta-infrared imaging.

Journal: Nature communications

Authors' code: We1wu/Multichannel-meta-infrared-imaging (no license), Zenodo 11544077 (CC-BY-4.0)

Status: code verified, 14 files readable

[26833] doi:10.1038/s41467-024-49597-z [paper, data]

Augmented microglial endoplasmic reticulum-mitochondria contacts mediate depression-like behavior in mice induced by chronic social defeat stress.

Journal: Nature communications

Status: data only, 1 dataset cited

[26834] doi:10.1038/s41592-024-02291-w [paper, repository]

Permittivity tensor imaging: modular label-free imaging of 3D dry mass and 3D orientation at high resolution.

Journal: Nature methods

Authors' code: mehta-lab/waveorder (BSD-3-Clause), micro-manager/pycro-manager (BSD-3-Clause)

Status: code verified, 165 files readable

[26835] doi:10.1038/s41598-024-64870-3 [paper, repository]

Neuronal avalanches in temporal lobe epilepsy as a noninvasive diagnostic tool investigating large scale brain dynamics.

Journal: Scientific reports

Authors' code: mccorsi/NeuronalAvalanches_TemporalLobeEpilepsy_EEG (BSD-3-Clause)

Status: code verified, 14 files readable, 8 matches

[26836] doi:10.1038/s41746-024-01140-6 [paper]

Head movement dynamics in dystonia: a multi-centre retrospective study using visual perceptive deep learning.

Journal: NPJ digital medicine

Status: code on request

[26837] doi:10.1038/s42003-024-06359-3 [paper, repository]

Membrane depolarization mediates both the inhibition of neural activity and cell-type-differences in response to high-frequency stimulation.

Journal: Communications biology

Authors' code: OSF hnpq4 (no license)

Status: code verified, 6 files readable, 1 match

[26838] doi:10.1038/s42003-024-06416-x [paper, repository]

Cognitive reserve involves decision making and is associated with left parietal and hippocampal hypertrophy in neurodegeneration.

Journal: Communications biology

Authors' code: OSF 894ae (no license)

Status: code verified, 4 files readable, 1 match

[26839] doi:10.1038/s44319-024-00178-7 [paper, data]

PHF2-mediated H3K9me balance orchestrates heterochromatin stability and neural progenitor proliferation.

Journal: EMBO reports

Status: data only, 2 datasets cited

[26840] doi:10.1038/s44321-024-00092-4 [paper]

Systemic immune challenge exacerbates neurodegeneration in a model of neurological lysosomal disease.

Journal: EMBO molecular medicine

Status: data only

[26841] doi:10.1073/pnas.2317673121 [paper, data]

Psychosocial experiences are associated with human brain mitochondrial biology.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[26842] doi:10.1073/pnas.2318361121 [paper, repository]

The time course of person perception from voices in the brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF n9kvc (no license)

Status: code verified, 1 file readable, 1 match

[26843] doi:10.1073/pnas.2405889121 [paper, repository]

Denisovan admixture facilitated environmental adaptation in Papua New Guinean populations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SillySabertooth/papuan_archaic_admixture (no license)

Status: code verified, 14 files readable, 2 matches

[26844] doi:10.1093/nsr/nwae213 [paper, repository]

Epigenomic landscapes during prefrontal cortex development and aging in rhesus.

Journal: National science review

Authors' code: ningchaozky/rheMac8paper (no license)

Status: code verified, 80 files readable

[26845] doi:10.1172/jci.insight.181339 [paper, data]

Chronic pharmacologic manipulation of dopamine transmission ameliorates metabolic disturbance in Trappc9-linked brain developmental syndrome.

Journal: JCI insight

Status: data only, 1 dataset cited

[26846] doi:10.1172/jci177692 [paper, data]

The NR4A2/VGF pathway fuels inflammation-induced neurodegeneration via promoting neuronal glycolysis.

Journal: The Journal of clinical investigation

Status: code on request, 1 dataset cited

[26847] doi:10.1186/s13024-024-00736-6 [paper, data]

Fate-mapping and functional dissection reveal perilous influence of type I interferon signaling in mouse brain aging.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[26848] doi:10.1186/s13578-024-01251-3 [paper]

Bradykinin promotes immune responses in differentiated embryonic neurospheres carrying APP^swe and PS1^dE9 mutations.

Journal: Cell & bioscience

Status: data only

[26849] doi:10.1212/wnl.0000000000209530 [paper, data]

Association of Cardiovascular Health With Brain Age Estimated Using Machine Learning Methods in Middle-Aged and Older Adults.

Journal: Neurology

Status: data only, 1 dataset cited

[26850] doi:10.1242/bio.060548 [paper, repository]

PatternJ: an ImageJ toolset for the automated and quantitative analysis of regular spatial patterns found in sarcomeres, axons, somites, and more.

Journal: Biology open

Authors' code: PierreMangeol/PatternJ (no license)

Status: code verified, 2 files readable

[26851] doi:10.1371/journal.pbio.3002651 [paper, repository]

A closed-loop auditory stimulation approach selectively modulates alpha oscillations and sleep onset dynamics in humans.

Journal: PLoS biology

Authors' code: HHebron/aclas_PB (no license), Zenodo 10834843 (CC-BY-4.0), jackatta/estimated-marginal-means (MIT)

Status: code verified, 14 files readable, 4 matches

[26852] doi:10.1371/journal.pone.0305333 [paper, data]

Chunk boundaries disrupt dependency processing in an AG: Reconciling incremental processing and discrete sampling.

Journal: PloS one

Status: data only, 1 dataset cited

[26853] doi:10.3389/fimmu.2024.1442322 [paper, data]

Editorial: Trends in neuroimmunology: cross-talk between brain-resident and peripheral immune cells in both health and disease.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[26854] doi:10.3389/fninf.2024.1414925 [paper, data]

Enhancing brain tumor detection in MRI with a rotation invariant Vision Transformer.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[26855] doi:10.3390/biomedicines12061348 [paper, data]

Effects of Cerebellar Non-Invasive Stimulation on Neurorehabilitation in Stroke Patients: An Updated Systematic Review.

Journal: Biomedicines

Status: data only, 1 dataset cited

[26856] doi:10.3758/s13428-024-02448-7 [paper, repository]

The Graded Incomplete Letters Test (GILT): a rapid test to detect cortical visual loss, with UK Biobank implementation.

Journal: Behavior research methods

Authors' code: eccentricvision/IncompleteLetters (MIT)

Status: code verified, 14 files readable, 2 matches

Monday, 17 June 2024 (30 papers, 24 on this page)

[26857] doi:10.1002/advs.202401467 [paper, repository]

Multiparametric Brain Hemodynamics Imaging Using a Combined Ultrafast Ultrasound and Photoacoustic System.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: pramethg/FUSPA (no license)

Status: code verified, 6 files readable

[26858] doi:10.1007/s00259-024-06796-6 [paper, repository]

Connectivity based on glucose dynamics reveals exaggerated sensorimotor network coupling on subject-level in Parkinson's disease.

Journal: European journal of nuclear medicine and molecular imaging

Authors' code: ruppertm/RSfPET-fMRI (no license)

Status: code verified, 5 files readable, 5 matches

[26859] doi:10.1007/s00422-024-00989-w [paper, repository]

COVID-19 and silent hypoxemia in a minimal closed-loop model of the respiratory rhythm generator.

Journal: Biological cybernetics

Authors' code: ModelDBRepository/229640 (no license), modeldb:229640 (no license), modeldb:2015954 (no license)

Status: code verified, 29 files readable, 2 matches

[26860] doi:10.1007/s10528-024-10832-3 [paper, data]

Establishment of the Diagnostic Signature of Ferroptosis Genes in Multiple Sclerosis.

Journal: Biochemical genetics

Status: data only, 1 dataset cited

[26861] doi:10.1016/j.isci.2024.110301 [paper]

Lateralized modulation of cortical beta power during human gait is related to arm swing.

Journal: iScience

Status: code on request

[26862] doi:10.1038/s41467-024-48746-8 [paper]

Differential cortical layer engagement during seizure initiation and spread in humans.

Journal: Nature communications

Status: code on request

[26863] doi:10.1038/s41531-024-00735-w [paper, data]

Neurovascular and immune factors of vulnerability of substantia nigra dopaminergic neurons in non-human primates.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[26864] doi:10.1038/s41537-024-00477-x [paper, repository]

Topological abnormalities of the morphometric similarity network of the cerebral cortex in schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: pnlbwh/pnlutil (no license)

Status: code verified, 256 files readable

[26865] doi:10.1038/s41591-024-03057-9 [paper, repository]

Personalized brain circuit scores identify clinically distinct biotypes in depression and anxiety.

Journal: Nature medicine

Authors' code: leotozzi88/cluster_study_2023 (no license)

Status: code verified, 48 files readable, 12 matches

[26866] doi:10.1038/s44321-024-00088-0 [paper, data]

DUSP6 inhibition overcomes neuregulin/HER3-driven therapy tolerance in HER2+ breast cancer.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[26867] doi:10.1073/pnas.2319175121 [paper, repository]

3.3 million years of stone tool complexity suggests that cumulative culture began during the Middle Pleistocene.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 11398650 (CC-BY-4.0), jnpaige/evolution_of_technological_complexity_analysis (no license)

Status: code verified, 4 files readable, 1 match

[26868] doi:10.1073/pnas.2402282121 [paper, data]

Two distinct networks for encoding goals and forms of action: An effective connectivity study.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[26869] doi:10.1080/19336934.2024.2368336 [paper, data]

The astrocyte-enriched gene &lt;i&gt;deathstar&lt;/i&gt; plays a crucial role in the development, locomotion, and lifespan of &lt;i&gt;D. melanogaster&lt;/i&gt;.

Journal: Fly

Status: data only, 1 dataset cited

[26870] doi:10.1093/beheco/arae049 [paper, repository]

Effects of maternal age and environmental enrichment on learning ability and brain size.

Journal: Behavioral ecology : official journal of the International Society for Behavioral Ecology

Authors' code: doi:10.5061/dryad.fxpnvx11h (no license)

Status: code verified

[26871] doi:10.1101/2024.06.17.599289 [paper, data]

Pathogenic LRRK2 mutations cause loss of primary cilia and Neurturin in striatal Parvalbumin interneurons

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[26872] doi:10.1162/imag_a_00195 [paper, data]

Predicting brain age across the adult lifespan with spontaneous oscillations and functional coupling in resting brain networks captured with magnetoencephalography.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[26873] doi:10.1172/jci179559 [paper, repository]

CIAO1 loss of function causes a neuromuscular disorder with compromise of nucleocytoplasmic Fe-S enzymes.

Journal: The Journal of clinical investigation

Authors' code: broadinstitute/gtex-pipeline (BSD-3-Clause)

Status: code verified, 39 files readable, 1 match

[26874] doi:10.1177/0271678x241262127 [paper, data]

Post-stroke cognitive impairment and brain hemorrhage are augmented in hypertensive mice.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: data only, 1 dataset cited

[26875] doi:10.1186/s10020-024-00857-0 [paper]

Unveiling the therapeutic potential of IHMT-337 in glioma treatment: targeting the EZH2-SLC12A5 axis.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only

[26876] doi:10.1186/s12864-024-10464-2 [paper, data]

Selection signatures of wool color in Gangba sheep revealed by genome-wide SNP discovery.

Journal: BMC genomics

Status: data only, 11 datasets cited

[26877] doi:10.1186/s12880-024-01323-3 [paper, data]

Robust brain tumor classification by fusion of deep learning and channel-wise attention mode approach.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[26878] doi:10.1186/s12938-024-01250-y [paper, data]

Automated diagnosis of schizophrenia based on spatial-temporal residual graph convolutional network.

Journal: Biomedical engineering online

Status: data only, 2 datasets cited

[26879] doi:10.1371/journal.pbio.3002678 [paper, repository]

The clock-like accumulation of germline and somatic mutations can arise from the interplay of DNA damage and repair.

Journal: PLoS biology

Authors' code: n-t-n-el/clock-like (MIT), Zenodo 11188647 (CC-BY-4.0)

Status: code verified, 8 files readable

[26880] doi:10.1371/journal.pcbi.1012184 [paper, repository]

Missing data in amortized simulation-based neural posterior estimation.

Journal: PLoS computational biology

Authors' code: emune-dev/Data-missingness-paper (no license), Zenodo 7515458 (CC-BY-4.0)

Status: code verified, 41 files readable, 3 matches

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.