Every paper, by date: page 121

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 121 of 200: 17 June 2024 to 7 June 2024.

Monday, 17 June 2024 (30 papers, 6 on this page)

[26881] doi:10.1371/journal.pone.0305741 [paper, data]

Exploring laser-induced acute and chronic retinal vein occlusion mouse models: Development, temporal in vivo imaging, and application perspectives.

Journal: PloS one

Status: data only, 2 datasets cited

[26882] doi:10.26508/lsa.202402673 [paper, data]

<i>C. elegans</i> LIN-66 mediates EIF-3/eIF3-dependent protein translation via a cold-shock domain.

Journal: Life science alliance

Status: data only, 1 dataset cited

[26883] doi:10.3389/fnins.2024.1418694 [paper, data]

Effects of chronic light cycle disruption during adolescence on circadian clock, neuronal activity rhythms, and behavior in mice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[26884] doi:10.3390/e26060522 [paper, data]

Unambiguous Models and Machine Learning Strategies for Anomalous Extreme Events in Turbulent Dynamical System.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

[26885] doi:10.3390/ijms25126640 [paper, data]

Exploring the Potential Role of Oligodendrocyte-Associated PIP4K2A in Alzheimer's Disease Complicated with Type 2 Diabetes Mellitus via Multi-Omic Analysis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[26886] doi:10.7554/elife.92095 [paper, repository]

Homeostatic regulation of rapid eye movement sleep by the preoptic area of the hypothalamus.

Journal: eLife

Authors' code: tortugar/Lab (no license)

Status: code verified, 33 files readable, 12 matches

Sunday, 16 June 2024 (1 paper)

[26887] doi:10.1007/s11548-024-03201-3 [paper, data]

BrainLossNet: a fast, accurate and robust method to estimate brain volume loss from longitudinal MRI.

Journal: International journal of computer assisted radiology and surgery

Status: data only, 1 dataset cited

Saturday, 15 June 2024 (13 papers)

[26888] doi:10.1016/j.heliyon.2024.e33134 [paper, repository]

Differences in cortical microstructure according to body mass index in neurologically healthy populations using structural magnetic resonance imaging.

Journal: Heliyon

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause), MICA-MNI/BrainStat (BSD-3-Clause)

Status: code verified, 390 files readable, 8 matches

[26889] doi:10.1016/j.isci.2024.110284 [paper]

Investigation of a fluorescent reporter microenvironment niche labeling strategy in experimental brain metastasis.

Journal: iScience

Status: code on request

[26890] doi:10.1016/j.neuro.2024.06.008 [paper, data]

Developmental exposure to the Fox River PCB mixture modulates behavior in juvenile mice.

Journal: Neurotoxicology

Status: data only, 1 dataset cited

[26891] doi:10.1016/j.omtn.2024.102251 [paper]

Selection of DNA aptamers that prevent the fibrillization of α-synuclein protein in cellular and mouse models.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[26892] doi:10.1038/s41467-024-49368-w [paper, data]

m<sup>5</sup>C methylated lncRncr3-MeCP2 interaction restricts miR124a-initiated neurogenesis.

Journal: Nature communications

Status: data only, 1 dataset cited

[26893] doi:10.1038/s41467-024-49402-x [paper, repository]

Disease progression modelling reveals heterogeneity in trajectories of Lewy-type α-synuclein pathology.

Journal: Nature communications

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable, 2 matches

[26894] doi:10.1038/s41467-024-49478-5 [paper, repository]

Hebbian priming of human motor learning.

Journal: Nature communications

Authors' code: JONAS-RUD-BJORNDAL/HebbianPrimingMotorLearning (no license), Zenodo 11203521 (CC-BY-4.0), movementandneuroscience/ballisticmotortask (no license)

Status: code verified, 13 files readable, 7 matches

[26895] doi:10.1038/s41531-024-00728-9 [paper, data]

Tau seeding activity in skin biopsy differentiates tauopathies from synucleinopathies.

Journal: NPJ Parkinson's disease

Status: data only, 2 datasets cited

[26896] doi:10.1038/s41531-024-00737-8 [paper]

Subthalamic nucleus input-output dynamics are correlated with Parkinson's burden and treatment efficacy.

Journal: NPJ Parkinson's disease

Status: code on request

[26897] doi:10.1038/s41537-024-00476-y [paper, repository]

Excitation/inhibition imbalance in schizophrenia: a meta-analysis of inhibitory and excitatory TMS-EMG paradigms.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: OSF 8cef3 (no license)

Status: code verified, 1 file readable, 1 match

[26898] doi:10.1038/s41598-024-64004-9 [paper, data]

Detection of Parkinson disease using multiclass machine learning approach.

Journal: Scientific reports

Status: data only, 2 datasets cited

[26899] doi:10.1113/jp285897 [paper, repository]

A multimodal exercise countermeasure prevents the negative impact of head-down tilt bed rest on muscle volume and mitochondrial health in older adults.

Journal: The Journal of physiology

Authors' code: Zenodo 7510438 (CC-BY-4.0)

Status: empty repository

[26900] doi:10.3390/bioengineering11060613 [paper, data]

A Convolutional Neural Network for SSVEP Identification by Using a Few-Channel EEG.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 14 June 2024 (27 papers)

[26901] doi:10.1002/acn3.52121 [paper, repository]

Altered brain perfusion and oxygen levels relate to sleepiness and attention in post-COVID syndrome.

Journal: Annals of clinical and translational neurology

Authors' code: bbfrederick/rapidtide (Apache-2.0)

Status: code verified, 362 files readable, 5 matches

[26902] doi:10.1002/pdi3.86 [paper, repository]

Vitamin A deficiency triggers colonic methylation potentially impairing colonic neuron via downregulation SGK1/FOXO pathway.

Journal: Pediatric discovery

Authors' code: tanghaibao/GOatools (BSD-2-Clause)

Status: code verified, 136 files readable, 4 matches

[26903] doi:10.1016/j.immuni.2024.05.017 [paper]

The brain microvasculature is a primary mediator of interferon-α neurotoxicity in human cerebral interferonopathies.

Journal: Immunity

Status: code on request

[26904] doi:10.1016/j.isci.2024.110263 [paper, repository]

Machine learning on longitudinal multi-modal data enables the understanding and prognosis of Alzheimer's disease progression.

Journal: iScience

Authors' code: ZJU-BMI/Personalized_HMM_disease_progression (no license)

Status: code verified, 8 files readable, 3 matches

[26905] doi:10.1016/j.xpro.2024.103133 [paper]

Protocol for auxin-inducible protein degradation in C. elegans using different auxins and TIR1-expressing strains.

Journal: STAR protocols

Status: code on request

[26906] doi:10.1016/j.ynirp.2024.100210 [paper]

High angular resolution diffusion-weighted imaging and higher order tractography of the white matter tracts in the anterior thalamic area: Insights into deep brain stimulation targeting.

Journal: Neuroimage. Reports

Status: code on request

[26907] doi:10.1038/s41398-024-02969-x [paper, data]

Linking haploinsufficiency of the autism- and schizophrenia-associated gene Cyfip1 with striatal-limbic-cortical network dysfunction and cognitive inflexibility.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[26908] doi:10.1038/s41467-024-49144-w [paper, repository]

Brain-state mediated modulation of inter-laminar dependencies in visual cortex.

Journal: Nature communications

Authors' code: pgmpy/pgmpy (MIT)

Status: code verified, 698 files readable, 6 matches

[26909] doi:10.1038/s41467-024-49192-2 [paper, repository]

Scanless two-photon voltage imaging.

Journal: Nature communications

Authors' code: Zenodo 11507381 (CC-BY-4.0)

Status: code verified, 1 file readable

[26910] doi:10.1038/s42003-024-06355-7 [paper, repository]

BrainTACO: an explorable multi-scale multi-modal brain transcriptomic and connectivity data resource.

Journal: Communications biology

Authors' code: Zenodo 10400999 (no license)

Status: code verified

[26911] doi:10.1038/s42003-024-06417-w [paper]

An ultra-short-acting benzodiazepine in thalamic nucleus reuniens undermines fear extinction via intermediation of hippocamposeptal circuits.

Journal: Communications biology

Status: code on request

[26912] doi:10.1117/1.nph.11.3.034310 [paper, repository]

Widefield <i>in vivo</i> imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination.

Journal: Neurophotonics

Authors' code: NIL-NeuroScience/WidefieldImagingAnalysis (no license), Zenodo 10798996 (CC-BY-4.0), Zenodo 10798658 (CC-BY-4.0)

Status: code verified, 71 files readable, 6 matches

[26913] doi:10.1126/sciadv.adk3953 [paper, repository]

Neuronal representation of visual working memory content in the primate primary visual cortex.

Journal: Science advances

Authors' code: datadryad.org/stash/share/zjqjw1k7reijqm_h_yca0bemmei3yxbjxbxdhqfz1yc (no license)

Status: dead link

[26914] doi:10.1128/spectrum.00628-24 [paper, data]

JCPyV infection of primary choroid plexus epithelial cells reduces expression of critical junctional proteins and increases expression of barrier disrupting inflammatory cytokines.

Journal: Microbiology spectrum

Status: data only, 1 dataset cited

[26915] doi:10.1161/jaha.123.033616 [paper]

Data-Driven Analysis Reveals Cortical Infarction Patterns Correlated With Inflammation and Prognosis: A Retrospective, Multicenter Cohort Study.

Journal: Journal of the American Heart Association

Status: code on request

[26916] doi:10.1162/nol_a_00143 [paper, repository]

Impact of ASL Exposure on Spoken Phonemic Discrimination in Adult CI Users: A Functional Near-Infrared Spectroscopy Study.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: jasinskalab/GEAR (no license)

Status: code verified, 4 files readable, 4 matches

[26917] doi:10.1162/nol_a_00146 [paper, data]

Relationship Between Resting State Functional Connectivity and Reading-Related Behavioural Measures in 69 Adults.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 2 datasets cited

[26918] doi:10.1242/dev.202794 [paper, data]

GPR124 regulates murine brain embryonic angiogenesis and BBB formation by an intracellular domain-independent mechanism.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[26919] doi:10.1242/jeb.247483 [paper, data]

Individual differences in the boldness of female zebrafish are associated with alterations in serotonin function.

Journal: The Journal of experimental biology

Status: data only, 1 dataset cited

[26920] doi:10.1523/eneuro.0476-23.2024 [paper, repository]

Facilitating the Sharing of Electrophysiology Data Analysis Results Through In-Depth Provenance Capture.

Journal: eNeuro

Authors' code: python-quantities/python-quantities (other), INM-6/alpaca (BSD-3-Clause), INM-6/alpaca_use_case (BSD-3-Clause), doi:10.12751/incf.ni2018.0019 (no license)

Status: code verified, 132 files readable, 25 matches

[26921] doi:10.1523/eneuro.0511-23.2024 [paper, repository]

Individualized Closed-Loop Acoustic Stimulation Suggests an Alpha Phase Dependence of Sound Evoked and Induced Brain Activity Measured with EEG Recordings.

Journal: eNeuro

Authors' code: readlabuser/Individualized-closed-loop-sensory-stimulation-reveals-alpha-phase-dependence (MIT)

Status: code verified, 17 files readable, 9 matches

[26922] doi:10.3389/fphar.2024.1419098 [paper, data]

Characterizing defective lipid metabolism in the lateral septum of mice treated with olanzapine: implications for its side effects.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[26923] doi:10.3390/biom14060696 [paper, repository]

Quercetin Protects Blood-Brain Barrier Integrity via the PI3K/Akt/Erk Signaling Pathway in a Mouse Model of Meningitis Induced by <i>Glaesserella parasuis</i>.

Journal: Biomolecules

Authors' code: lh3/seqtk (MIT)

Status: code verified, 5 files readable

[26924] doi:10.3390/cells13121033 [paper, data]

Context-Dependent Regulation of Peripheral Nerve Abundance by the PI3K Pathway in the Tumor Microenvironment of Head and Neck Squamous Cell Carcinoma.

Journal: Cells

Status: data only, 1 dataset cited

[26925] doi:10.7554/elife.100526 [paper, data]

Correction: Statistical context dictates the relationship between feedback-related EEG signals and learning.

Journal: eLife

Status: data only, 1 dataset cited

[26926] doi:10.7554/elife.92844 [paper, repository]

Identification and characterization of intermediate states in mammalian neural crest cell epithelial to mesenchymal transition and delamination.

Journal: eLife

Authors' code: jayunruh/Jay_Plugins (GPL-2.0)

Status: code verified, 664 files readable, 4 matches

[26927] doi:10.7717/peerj-cs.2077 [paper, repository]

Deep learning-driven dyslexia detection model using multi-modality data.

Journal: PeerJ. Computer science

Authors' code: kaggle.com/code/alrohit (no license), supp:PMC11232624/peerj-cs-10-2077-s001.py (no license), supp:PMC11232624/peerj-cs-10-2077-s002.py (no license), supp:PMC11232624/peerj-cs-10-2077-s003.py (no license)

Status: code verified, 3 files readable, 2 matches

Thursday, 13 June 2024 (36 papers)

[26928] doi:10.1007/s12264-024-01231-0 [paper, repository]

A Cysteinyl-tRNA Synthetase Mutation Causes Novel Autosomal-Dominant Inheritance of a Parkinsonism/Spinocerebellar-Ataxia Complex.

Journal: Neuroscience bulletin

Authors' code: liuhankui/WGS-linkage (no license), BGI-flexlab/SOAPnuke (GPL-3.0), hall-lab/svtyper (MIT), magnusdv/segregatr (no license)

Status: code verified, 74 files readable, 2 matches

[26929] doi:10.1016/j.bbih.2024.100805 [paper, repository]

Changes in neuroinflammatory biomarkers correlate with disease severity and neuroimaging alterations in patients with COVID-19 neurological complications.

Journal: Brain, behavior, & immunity - health

Authors' code: Zenodo 8074722 (other-open), guireiso/omicscope (MIT)

Status: code verified, 73 files readable, 4 matches

[26930] doi:10.1016/j.ceca.2024.102923 [paper, data]

ER and SOCE Ca<sup>2+</sup> signals are not required for directed cell migration in human iPSC-derived microglia.

Journal: Cell calcium

Status: data only, 2 datasets cited

[26931] doi:10.1016/j.celrep.2024.114359 [paper, repository]

Causal evidence for cholinergic stabilization of attractor landscape dynamics.

Journal: Cell reports

Authors' code: Zenodo 11324156 (CC-BY-4.0), jlizier/jidt (gpl), shinelabusyd/cholinergic_analysis (no license)

Status: code verified, 594 files readable, 3 matches

[26932] doi:10.1016/j.cub.2024.05.031 [paper, repository]

Pheromone representation in the ant antennal lobe changes with age.

Journal: Current biology : CB

Authors' code: Zenodo 11151724 (CC-BY-4.0), Zenodo 11151756 (CC-BY-4.0)

Status: code verified, 5 files readable

[26933] doi:10.1016/j.heliyon.2024.e33030 [paper]

Identification of TNFAIP6 as a reliable prognostic indicator of low-grade glioma.

Journal: Heliyon

Status: code on request

[26934] doi:10.1016/j.isci.2024.110266 [paper, data]

Neural-circuit basis of song preference learning in fruit flies.

Journal: iScience

Status: code on request, 1 dataset cited

[26935] doi:10.1016/j.isci.2024.110267 [paper]

IL-6 is associated with poor seizure control in low-grade glioma patients undergoing primary resection.

Journal: iScience

Status: code on request

[26936] doi:10.1016/j.jbc.2024.107474 [paper, data]

Deafness causing neuroplastin missense variants fail to promote plasma membrane Ca<sup>2+</sup>-ATPase levels and Ca<sup>2+</sup> transient regulation in brain neurons.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[26937] doi:10.1016/j.stemcr.2024.05.006 [paper]

Self-assembling 3D vessel-on-chip model with hiPSC-derived astrocytes.

Journal: Stem cell reports

Status: code on request

[26938] doi:10.1016/j.stemcr.2024.05.008 [paper, repository]

Cellular and axonal transport phenotypes due to the C9ORF72 HRE in iPSC motor and sensory neurons.

Journal: Stem cell reports

Authors' code: jscaber/sensorimotor (GPL-3.0), cgat-developers/cgat-flow (MIT)

Status: code verified, 323 files readable, 7 matches

[26939] doi:10.1021/acsomega.4c02643 [paper, data]

Molecular Insight into the Effect of HIV-TAT Protein on Amyloid-β Peptides.

Journal: ACS omega

Status: data only, 2 datasets cited

[26940] doi:10.1038/s41439-024-00281-0 [paper, repository]

Identifying unstable CNG repeat loci in the human genome: a heuristic approach and implications for neurological disorders.

Journal: Human genome variation

Authors' code: bharathramh/str_repeat (no license)

Status: code verified, 1 file readable

[26941] doi:10.1038/s41467-024-48952-4 [paper, repository]

Differences in regional brain structure in toddlers with autism are related to future language outcomes.

Journal: Nature communications

Authors' code: Luckykathy6/ASDLanguagePredict (no license), Zenodo 11200676 (CC-BY-4.0)

Status: code verified, 2 files readable

[26942] doi:10.1038/s41467-024-49480-x [paper, data]

MRI-based microthrombi detection in stroke with polydopamine iron oxide.

Journal: Nature communications

Status: data only, 1 dataset cited

[26943] doi:10.1038/s41593-024-01676-6 [paper, data]

Fear learning induces synaptic potentiation between engram neurons in the rat lateral amygdala.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

[26944] doi:10.1038/s41597-024-03479-7 [paper, repository]

Neurophysiological recordings from parietal areas of macaque brain during an instructed-delay reaching task.

Journal: Scientific data

Authors' code: gin.g-node.org/sdiomedi/spl_single_units_reaching_task (CC-BY-4.0)

Status: code verified, 9 files readable

[26945] doi:10.1038/s41598-024-63541-7 [paper, data]

Altered immune pathways in patients of temporal lobe epilepsy with and without hippocampal sclerosis.

Journal: Scientific reports

Status: data only, 8 datasets cited

[26946] doi:10.1038/s41598-024-64375-z [paper]

Notch signaling regulates UNC5B to suppress endothelial proliferation, migration, junction activity, and retinal plexus branching.

Journal: Scientific reports

Status: data only

[26947] doi:10.1038/s41598-024-64417-6 [paper, repository]

Emergence of input selective recurrent dynamics via information transfer maximization.

Journal: Scientific reports

Authors' code: Zenodo 10801126 (CC-BY-4.0)

Status: code verified, 35 files readable

[26948] doi:10.1038/s41598-024-64498-3 [paper, data]

Prenatal family income, but not parental education, is associated with resting brain activity in 1-month-old infants.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[26949] doi:10.1038/s43856-024-00547-2 [paper]

Real-time motion-enabling positron emission tomography of the brain of upright ambulatory humans.

Journal: Communications medicine

Status: code on request

[26950] doi:10.1038/s44319-024-00174-x [paper, data]

ADAMTS2 promotes radial migration by activating TGF-β signaling in the developing neocortex.

Journal: EMBO reports

Status: data only, 1 dataset cited

[26951] doi:10.1073/pnas.2305326121 [paper, repository]

Synapse-type-specific competitive Hebbian learning forms functional recurrent networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: comp-neural-circuits/Synapse-type-specific-competitive-Hebbian-learning (no license)

Status: code verified, 9 files readable, 1 match

[26952] doi:10.1083/jcb.202312046 [paper, repository]

Torques within and outside the human spindle balance twist at anaphase.

Journal: The Journal of cell biology

Authors' code: abcucberkeley/LLSM5DTools (GPL-3.0)

Status: code verified, 753 files readable, 4 matches

[26953] doi:10.1088/1741-2552/ad5407 [paper, repository]

Irregular optogenetic stimulation waveforms can induce naturalistic patterns of hippocampal spectral activity.

Journal: Journal of neural engineering

Authors' code: ericrcole/opto_param_analysis (no license)

Status: code verified, 21 files readable, 10 matches

[26954] doi:10.1093/braincomms/fcae198 [paper, repository]

Disruption in functional networks mediated tau spreading in Alzheimer's disease.

Journal: Brain communications

Authors' code: fardinnabizadeh/Disruption-in-functional-networks-mediated-tau-spreading- (no license)

Status: code verified, 4 files readable

[26955] doi:10.1128/mbio.01321-24 [paper, data]

Short-chain fatty acids abrogate Japanese encephalitis virus-induced inflammation in microglial cells via miR-200a-3p/ZBTB20/IKβα axis.

Journal: mBio

Status: data only, 1 dataset cited

[26956] doi:10.1162/imag_a_00193 [paper, repository]

Generative AI for rapid diffusion MRI with improved image quality, reliability, and generalizability.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ucsfncl/dmri-swin (MIT)

Status: code verified, 8 files readable, 2 matches

[26957] doi:10.1186/s12974-024-03128-1 [paper, repository]

Profiling the neuroimmune cascade in 3xTg-AD mice exposed to successive mild traumatic brain injuries.

Journal: Journal of neuroinflammation

Authors' code: edammer/CellTypeFET (MIT), edammer/MAGMA.SPA (MIT)

Status: code verified, 6 files readable, 1 match

[26958] doi:10.1371/journal.pone.0289901 [paper, repository]

Inter and intralaminar excitation of parvalbumin interneurons in mouse barrel cortex.

Journal: PloS one

Authors' code: ksscheuer/Inter_intra_laminar (no license), Zenodo 11106962 (CC-BY-4.0)

Status: code verified, 4 files readable

[26959] doi:10.1371/journal.pone.0305082 [paper, data]

Analysis of the alpha activity envelope in electroencephalography in relation to the ratio of excitatory to inhibitory neural activity.

Journal: PloS one

Status: data only, 2 datasets cited

[26960] doi:10.1371/journal.pone.0305328 [paper, repository]

A planar neuromuscular controller to simulate compensation strategies in the sit-to-walk movement.

Journal: PloS one

Authors' code: BODIES-Lab-TU-Delft/Sit-to-walk-predictive-simulations (no license), BODIES-Lab-TU-Delft/STW-case-study-unilateral-pain (no license)

Status: empty repository, 2 files readable

[26961] doi:10.3389/fcell.2024.1406330 [paper, repository]

Cytokines IL-1β and IL-10 are required for Müller glia proliferation following light damage in the adult zebrafish retina.

Journal: Frontiers in cell and developmental biology

Authors' code: jiewwwang/Single-cell-retinal-regeneration (no license)

Status: empty repository, 1 file readable

[26962] doi:10.3389/fneur.2024.1387743 [paper, data]

Exploring MAP2K3 as a prognostic biomarker and potential immunotherapy target in glioma treatment.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[26963] doi:10.7554/elife.87297 [paper, repository]

Brain age has limited utility as a biomarker for capturing fluid cognition in older individuals.

Journal: eLife

Authors' code: HAM-lab-Otago-University/HCP-Aging_commonality (CC0-1.0)

Status: code verified, 27 files readable, 6 matches

Wednesday, 12 June 2024 (39 papers)

[26964] doi:10.1002/alz.13823 [paper, data]

Assessment of brain-derived extracellular vesicle enrichment for blood biomarker analysis in age-related neurodegenerative diseases: An international overview.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[26965] doi:10.1016/j.heliyon.2024.e32870 [paper, repository]

SurvNet: A low-complexity convolutional neural network for survival time classification of patients with glioblastoma.

Journal: Heliyon

Authors' code: OriginLyu/SurvNet (no license)

Status: code verified, 3 files readable, 1 match

[26966] doi:10.1016/j.isci.2024.110259 [paper]

IL-17A produced by POMC neurons regulates diet-induced obesity.

Journal: iScience

Status: code on request

[26967] doi:10.1016/j.nicl.2024.103631 [paper, repository]

Brain microstructure and connectivity in COVID-19 patients with olfactory or cognitive impairment.

Journal: NeuroImage. Clinical

Authors' code: 3tissue.github.io (no license)

Status: code verified

[26968] doi:10.1038/s41467-024-49300-2 [paper, repository]

Tau follows principal axes of functional and structural brain organization in Alzheimer's disease.

Journal: Nature communications

Authors' code: AICONSlab/AD_connectome_gradients (BSD-3-Clause)

Status: code verified, 6 files readable, 3 matches

[26969] doi:10.1038/s41586-024-07557-z [paper, repository]

Mental navigation in the primate entorhinal cortex.

Journal: Nature

Authors' code: jazlab/Neupane_Fiete_Jazayeri_mental_navigation (no license)

Status: code verified, 16 files readable, 3 matches

[26970] doi:10.1038/s41598-024-62341-3 [paper, repository]

Intersubject correlations in reward and mentalizing brain circuits separately predict persuasiveness of two types of ISIS video propaganda.

Journal: Scientific reports

Authors' code: OSF w5qpx (no license)

Status: code verified, 8 files readable, 7 matches

[26971] doi:10.1038/s41598-024-63511-z [paper, repository]

Visualization of incrementally learned projection trajectories for longitudinal data.

Journal: Scientific reports

Authors' code: TamashaM/IncrementalFramework (no license)

Status: code verified, 13 files readable, 1 match

[26972] doi:10.1038/s41598-024-63827-w [paper]

CircZNF609 and circNFIX as possible regulators of glioblastoma pathogenesis via miR-145-5p/EGFR axis.

Journal: Scientific reports

Status: data only

[26973] doi:10.1038/s41598-024-63942-8 [paper, repository]

Neuroprotective effects of naltrexone in a mouse model of post-traumatic seizures.

Journal: Scientific reports

Authors' code: Jackson-Kyle-CCOM/Automated-EEG-Algorithm (AGPL-3.0)

Status: code verified, 6 files readable, 2 matches

[26974] doi:10.1038/s41598-024-64409-6 [paper]

Dynamic modulation of the processing of unpredicted technical errors by the posterior cingulate and the default mode network.

Journal: Scientific reports

Status: code on request

[26975] doi:10.1038/s43856-024-00541-8 [paper, repository]

Distinct brain morphometry patterns revealed by deep learning improve prediction of post-stroke aphasia severity.

Journal: Communications medicine

Authors' code: alexteghipco/brainSurfer (BSD-2-Clause), alexteghipco/volDNN (GPL-3.0), alexteghipco/consensusClustering (BSD-2-Clause), alexteghipco/StabilitySelection (GPL-3.0), Zenodo 4027711 (other-open), Zenodo 10849305 (CC-BY-4.0), Zenodo 10849272 (CC-BY-4.0), Zenodo 10231528 (CC-BY-4.0)

Status: code verified, 455 files readable, 16 matches

[26976] doi:10.1063/5.0195680 [paper, repository]

Decoding electroencephalographic responses to visual stimuli compatible with electrical stimulation.

Journal: APL bioengineering

Authors' code: gretatuckute/DecodingSensitivityMapping (no license)

Status: code verified, 6 files readable

[26977] doi:10.1063/5.0202385 [paper, repository]

An open computational toolbox to analyze multi- and single-unit sympathetic nerve activity in microneurography.

Journal: Biophysics reviews

Authors' code: Neuro-Robotic-Touch-Laboratory/Microneurography-Toolbox (CC0-1.0)

Status: code verified, 2,000 files readable, 10 matches

[26978] doi:10.1093/braincomms/fcae176 [paper, data]

The relevance of Spearman's <i>g</i> for epilepsy.

Journal: Brain communications

Status: data only, 1 dataset cited

[26979] doi:10.1093/pnasnexus/pgae234 [paper, data]

A leak K⁺ channel TWK-40 sustains the rhythmic motor program.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[26980] doi:10.1098/rsob.230349 [paper, repository]

Risk factors for severe COVID-19 disease increase SARS-CoV-2 infectivity of endothelial cells and pericytes.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7214508 (no license)

Status: code found, still to be checked

[26981] doi:10.1098/rsob.240063 [paper, data]

Decoding frontotemporal and cell-type-specific vulnerabilities to neuropsychiatric disorders and psychoactive drugs.

Journal: Open biology

Status: data only, 3 datasets cited

[26982] doi:10.1098/rsos.231884 [paper, repository]

The causal involvement of the visual cortex in visual working memory remains uncertain.

Journal: Royal Society open science

Authors' code: OSF chzd7 (no license)

Status: code verified, 4 files readable, 2 matches

[26983] doi:10.1098/rsos.240329 [paper, repository]

Neuromolecular mechanisms related to reflex behaviour in <i>Aplysia</i> are affected by ocean acidification.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7262679.v1 (no license)

Status: code found, still to be checked

[26984] doi:10.1117/1.nph.11.3.034311 [paper, repository]

OpenSTED: open-source dynamic intensity minimum system for stimulated emission depletion microscopy.

Journal: Neurophotonics

Authors' code: cuneurophotonics/dyminsted4all (GPL-3.0)

Status: code verified, 13 files readable, 1 match

[26985] doi:10.1126/sciadv.adk6063 [paper, repository]

Neuroimaging epicenters as potential sites of onset of the neuroanatomical pathology in schizophrenia.

Journal: Science advances

Authors' code: frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 7 files readable

[26986] doi:10.1126/sciadv.adl5307 [paper, repository]

Discovering the gene-brain-behavior link in autism via generative machine learning.

Journal: Science advances

Authors' code: codeshinjini/Gene-brain-behavior-link (GPL-2.0), Zenodo 10982959 (GPL-2.0)

Status: code verified, 93 files readable, 8 matches

[26987] doi:10.1152/jn.00034.2024 [paper, data]

Dexterous manipulation: differential sensitivity of manipulation and grasp forces to task requirements.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[26988] doi:10.1152/jn.00287.2023 [paper, repository]

Optimization of an anatomically and electrically detailed rodent subthalamic nucleus neuron model.

Journal: Journal of neurophysiology

Authors' code: jimmychj/STN-Neuron (no license)

Status: code verified, 26 files readable, 7 matches

[26989] doi:10.1159/000539800 [paper, repository]

Classification of Mild Cognitive Impairment and Alzheimer's Disease Using Manual Motor Measures.

Journal: Neuro-degenerative diseases

Authors' code: mtorchiano/lmPerm (no license)

Status: code verified, 14 files readable

[26990] doi:10.1186/s12859-024-05825-3 [paper, repository]

Assessing transcriptomic heterogeneity of single-cell RNASeq data by bulk-level gene expression data.

Journal: BMC bioinformatics

Authors' code: chyeang/backward-deconvolution (no license)

Status: code verified, 2 files readable, 1 match

[26991] doi:10.1186/s12984-024-01398-7 [paper, repository]

Post-stroke hand gesture recognition via one-shot transfer learning using prototypical networks.

Journal: Journal of neuroengineering and rehabilitation

Authors' code: HSarwat/Few-Shot-Proto-TL (MIT)

Status: code verified, 12 files readable, 1 match

[26992] doi:10.1371/journal.pcbi.1012047 [paper, repository]

Conductance-based dendrites perform Bayes-optimal cue integration.

Journal: PLoS computational biology

Authors' code: unibe-cns/learning-bayes-optimal-dendritic-opinion-pooling (GPL-3.0)

Status: code verified, 14 files readable

[26993] doi:10.1371/journal.pone.0304563 [paper, data]

Behavioral and genetic correlates of heterogeneity in learning performance in individual honeybees, Apis mellifera.

Journal: PloS one

Status: data only, 1 dataset cited

[26994] doi:10.14336/ad.2024.0089 [paper, data]

Senescent Astrocytes Derived from Human Pluripotent Stem Cells Reveal Age-Related Changes and Implications for Neurodegeneration.

Journal: Aging and disease

Status: data only, 1 dataset cited

[26995] doi:10.14336/ad.2024.0429 [paper, repository]

Systematic Analysis of Biological Processes Reveals Gene Co-expression Modules Driving Pathway Dysregulation in Alzheimer's Disease.

Journal: Aging and disease

Authors' code: TemiLeke/systematic_ad_analysis (no license)

Status: code verified, 45 files readable, 21 matches

[26996] doi:10.1523/jneurosci.1873-23.2024 [paper, repository]

Computational Mechanisms Underlying Motivation to Earn Symbolic Reinforcers.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: dcb4p/mdp_tokens (no license)

Status: code verified, 1 file readable

[26997] doi:10.1523/jneurosci.2029-23.2024 [paper, repository]

40 Hz Steady-State Response in Human Auditory Cortex Is Shaped by Gabaergic Neuronal Inhibition.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Tosot91/ASSR_MEG_drugs (MIT), DonnerLab/pymeg (no license)

Status: code verified, 56 files readable, 13 matches

[26998] doi:10.2463/mrms.rev.2024-0007 [paper, repository]

Tractometry of Human Visual White Matter Pathways in Health and Disease.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Authors' code: 36000/MRMS_tractometry_review (no license)

Status: code verified, 6 files readable, 3 matches

[26999] doi:10.3389/fnana.2024.1403170 [paper, repository]

Network analysis of marmoset cortical connections reveals pFC and sensory clusters.

Journal: Frontiers in neuroanatomy

Authors' code: BrainDynamicsUSYD/MarmosetCortex (no license)

Status: code verified, 12 files readable, 4 matches

[27000] doi:10.3389/fnhum.2024.1394107 [paper, data]

A deep neural network and transfer learning combined method for cross-task classification of error-related potentials.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[27001] doi:10.3389/fnins.2024.1344114 [paper, repository]

A single fast Hebbian-like process enabling one-shot class addition in deep neural networks without backbone modification.

Journal: Frontiers in neuroscience

Authors' code: hosodakazufumi/tfdone (Apache-2.0)

Status: code verified, 7 files readable, 3 matches

[27002] doi:10.3389/fnins.2024.1389680 [paper, repository]

Tractometry of the Human Connectome Project: resources and insights.

Journal: Frontiers in neuroscience

Authors' code: nrdg/tractoscope (no license), Zenodo 11204589 (CC-BY-4.0), OSF u4g5p (no license), niivue/niivue (BSD-2-Clause)

Status: code verified, 322 files readable, 2 matches

Tuesday, 11 June 2024 (35 papers)

[27003] doi:10.1007/s00401-024-02749-3 [paper]

Early and selective localization of tau filaments to glutamatergic subcellular domains within the human anterodorsal thalamus.

Journal: Acta neuropathologica

Status: code on request

[27004] doi:10.1007/s12021-024-09668-4 [paper, repository]

Solving the Pervasive Problem of Protocol Non-Compliance in MRI using an Open-Source tool mrQA.

Journal: Neuroinformatics

Authors' code: Open-Minds-Lab/MRdataset (Apache-2.0), Open-Minds-Lab/mrQA (Apache-2.0), open-minds-lab.github.io/mrdataset (no license)

Status: code verified, 66 files readable, 5 matches

[27005] doi:10.1016/j.ajhg.2024.05.015 [paper, repository]

A scalable and robust variance components method reveals insights into the architecture of gene-environment interactions underlying complex traits.

Journal: American journal of human genetics

Authors' code: sriramlab/GENIE (MIT)

Status: code verified, 599 files readable

[27006] doi:10.1016/j.celrep.2024.114330 [paper]

CGG repeats in the human FMR1 gene regulate mRNA localization and cellular stress in developing neurons.

Journal: Cell reports

Status: code on request

[27007] doi:10.1016/j.isci.2024.110239 [paper]

Projection neurons from medial entorhinal cortex to basolateral amygdala are critical for the retrieval of morphine withdrawal memory.

Journal: iScience

Status: code on request

[27008] doi:10.1016/j.isci.2024.110243 [paper]

Neuronal-enriched small extracellular vesicles trigger a PD-L1-mediated broad suppression of T cells in Parkinson's disease.

Journal: iScience

Status: code on request

[27009] doi:10.1016/j.isci.2024.110247 [paper]

Early language experience modulates the tradeoff between acoustic-temporal and lexico-semantic cortical tracking of speech.

Journal: iScience

Status: code on request

[27010] doi:10.1016/j.isci.2024.110248 [paper]

Molecular and cellular basis of sodium sensing in <i>Drosophila</i> labellum.

Journal: iScience

Status: code on request

[27011] doi:10.1016/j.xcrm.2024.101608 [paper, repository]

Cancer mutational signatures identification in clinical assays using neural embedding-based representations.

Journal: Cell reports. Medicine

Authors' code: facebookresearch/StarSpace (MIT), ma-compbio/MutSpace (MIT), Adarya/MESiCA (other)

Status: code verified, 65 files readable, 13 matches

[27012] doi:10.1038/s41467-024-48576-8 [paper, repository]

Transcranial focused ultrasound to V5 enhances human visual motion brain-computer interface by modulating feature-based attention.

Journal: Nature communications

Authors' code: bfinl/tFUS-mVEPBCI-Analysis (BSD), Zenodo 10969062 (CC-BY-4.0)

Status: code verified, 20 files readable, 14 matches

[27013] doi:10.1038/s41467-024-48841-w [paper, repository]

Secretome profiling reveals acute changes in oxidative stress, brain homeostasis, and coagulation following short-duration spaceflight.

Journal: Nature communications

Authors' code: eliah-o/inspiration4-omics (no license), Zenodo 1109378 (CC-BY-4.0)

Status: code verified, 91 files readable, 9 matches

[27014] doi:10.1038/s41467-024-48916-8 [paper, repository]

Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice.

Journal: Nature communications

Authors' code: giacomellolab/NASA_RR3_Brain (MIT)

Status: code verified, 23 files readable, 11 matches

[27015] doi:10.1038/s41598-024-61840-7 [paper, repository]

Whole-genome sequencing identifies variants in ANK1, LRRN1, HAS1, and other genes and regulatory regions for stroke in type 1 diabetes.

Journal: Scientific reports

Authors' code: zhanxw.github.io/rvtests (no license), xihaoli/STAAR (GPL-3.0), hanchenphd/GMMAT (other)

Status: code verified, 144 files readable

[27016] doi:10.1038/s41598-024-64054-z [paper, repository]

Cortical processes of multisensory plausibility modulation of vibrotactile perception in virtual environments in middled-aged and older adults.

Journal: Scientific reports

Authors' code: OSF 625qn (no license)

Status: code verified, 6 files readable, 3 matches

[27017] doi:10.1038/s42003-024-06211-8 [paper, repository]

Regional brain aging: premature aging of the domain general system predicts aphasia severity.

Journal: Communications biology

Authors' code: neurolabusc/nii_preprocess (no license), james-cole/brainageR (LGPL-3.0), Zenodo 4027711 (other-open), rogiedodgie/nii_preprocess (no license)

Status: code verified, 304 files readable, 7 matches

[27018] doi:10.1038/s42003-024-06372-6 [paper, repository]

Cortical-striatal brain network distinguishes deepfake from real speaker identity.

Journal: Communications biology

Authors' code: OSF 89m2s (no license)

Status: code verified, 2 files readable

[27019] doi:10.1038/s42003-024-06407-y [paper, data]

Knockout of the longevity gene Klotho perturbs aging and Alzheimer's disease-linked brain microRNAs and tRNA fragments.

Journal: Communications biology

Status: data only, 1 dataset cited

[27020] doi:10.1073/pnas.2405588121 [paper, data]

A population of neurons selective for human voice in the monkey brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[27021] doi:10.1085/jgp.202313484 [paper, repository]

Fusion pore flux controls the rise-times of quantal synaptic responses.

Journal: The Journal of general physiology

Authors' code: meyerjackson/minis-jgp-2024 (no license)

Status: code verified, 2 files readable, 1 match

[27022] doi:10.1093/braincomms/fcae200 [paper, repository]

Under pressure: the interplay of hypertension and white matter hyperintensities with cognition in chronic stroke aphasia.

Journal: Brain communications

Authors' code: neurolabusc/nii_preprocess (no license), Zenodo 4027711 (other-open), rogiedodgie/nii_preprocess (no license)

Status: code verified, 295 files readable, 4 matches

[27023] doi:10.1093/braincomms/fcae202 [paper, data]

Downregulation of the silent potassium channel Kv8.1 increases motor neuron vulnerability in amyotrophic lateral sclerosis.

Journal: Brain communications

Status: data only, 1 dataset cited

[27024] doi:10.1093/braincomms/fcae205 [paper, repository]

SuperAging functional connectomics from resting-state functional MRI.

Journal: Brain communications

Authors' code: ThomasYeoLab/CBIG (MIT)

Status: code verified, 2,000 files readable, 1 match

[27025] doi:10.1186/s10194-024-01803-5 [paper, data]

Longitudinal neurofunctional changes in medication overuse headache patients after mindfulness practice in a randomized controlled trial (the MIND-CM study).

Journal: The journal of headache and pain

Status: data only, 2 datasets cited

[27026] doi:10.1186/s10194-024-01806-2 [paper, repository]

Shifts in structural connectome organization in the limbic and sensory systems of patients with episodic migraine.

Journal: The journal of headache and pain

Authors' code: sites.google.com/site/bctnet (no license), MICA-MNI/ENIGMA (BSD-3-Clause)

Status: code verified, 119 files readable, 2 matches

[27027] doi:10.1212/wnl.0000000000209419 [paper, repository]

Continuous β-Amyloid CSF/PET Imbalance Model to Capture Alzheimer Disease Heterogeneity.

Journal: Neurology

Authors' code: amypad.eu/resources/software (no license)

Status: code verified

[27028] doi:10.12688/f1000research.146347.2 [paper, repository]

Wings of Change: aPKC/FoxP-dependent plasticity in steering motor neurons underlies operant self-learning in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: F1000Research

Authors' code: Zenodo 7102195 (other-open), Zenodo 10041052 (CC-BY-4.0), Zenodo 7101734 (other-open), Zenodo 7101741 (CC-BY-4.0), brembslab/DTSevaluations (GPL-3.0), brembslab/dtsexperiments (no license)

Status: code verified, 29 files readable, 5 matches

[27029] doi:10.1371/journal.pone.0305044 [paper, data]

Neural respiratory drive during maximal voluntary ventilation in individuals with hypertension: A case-control study.

Journal: PloS one

Status: data only, 1 dataset cited

[27030] doi:10.1371/journal.pone.0305166 [paper, data]

Epilepsy detection based on multi-head self-attention mechanism.

Journal: PloS one

Status: data only, 1 dataset cited

[27031] doi:10.1371/journal.pone.0305256 [paper, repository]

Postnatal maternal care moderates the effects of prenatal bisphenol exposure on offspring neurodevelopmental, behavioral, and transcriptomic outcomes.

Journal: PloS one

Authors' code: lapphe/raspberry_rat (no license), lapphe/automated_anxiety (no license), SLauby/bisphenols_maternalcare_tagseq (no license), z0on/tag-based_RNAseq (no license)

Status: code verified, 51 files readable, 7 matches

[27032] doi:10.3389/fnagi.2024.1419253 [paper]

Brain and serum lipidomic profiles implicate Lands cycle acyl chain remodeling association with <i>APOEε4</i> and mild cognitive impairment.

Journal: Frontiers in aging neuroscience

Status: code on request

[27033] doi:10.3389/fnhum.2024.1405586 [paper, data]

BrainCDNet: a concatenated deep neural network for the detection of brain tumors from MRI images.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[27034] doi:10.3390/biom14060678 [paper, data]

Examining Transcriptomic Alterations in Rat Models of Intracerebral Hemorrhage and Severe Intracerebral Hemorrhage.

Journal: Biomolecules

Status: data only, 1 dataset cited

[27035] doi:10.3390/cells13121020 [paper, data]

Digital Pathology Identifies Associations between Tissue Inflammatory Biomarkers and Multiple Sclerosis Outcomes.

Journal: Cells

Status: data only, 1 dataset cited

[27036] doi:10.3390/jimaging10060141 [paper, data]

Residual-Based Multi-Stage Deep Learning Framework for Computer-Aided Alzheimer's Disease Detection.

Journal: Journal of imaging

Status: data only, 2 datasets cited

[27037] doi:10.3390/s24123779 [paper]

Synchronization of Neurophysiological and Biomechanical Data in a Real-Time Virtual Gait Analysis System (GRAIL): A Proof-of-Principle Study.

Journal: Sensors (Basel, Switzerland)

Status: code on request

Monday, 10 June 2024 (38 papers)

[27038] doi:10.1007/s10548-024-01057-z [paper, repository]

The Role of Anatomic Connectivity in Inhibitory Control Revealed by Combining Connectome-based Lesion-symptom Mapping with Event-related Potentials.

Journal: Brain topography

Authors' code: CorentinWicht/GFPPeaks (CC-BY-NC-4.0), Zenodo 7845740 (CC-BY-4.0)

Status: code verified, 100 files readable, 4 matches

[27039] doi:10.1016/j.csbj.2024.06.002 [paper, data]

Numerical simulation study of nanoparticle diffusion in gray matter.

Journal: Computational and structural biotechnology journal

Status: data only, 1 dataset cited

[27040] doi:10.1016/j.dcn.2024.101401 [paper, repository]

Neuroadaptive Bayesian optimisation to study individual differences in infants' engagement with social cues.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 8yfv2 (no license)

Status: empty repository

[27041] doi:10.1016/j.ncrna.2024.06.008 [paper, data]

Oligodendrocyte-specific expression of <i>PSG8</i>-<i>AS1</i> suggests a role in myelination with prognostic value in oligodendroglioma.

Journal: Non-coding RNA research

Status: data only, 1 dataset cited

[27042] doi:10.1038/s41398-024-02947-3 [paper, repository]

Pharmacological modulation of developmental and synaptic phenotypes in human SHANK3 deficient stem cell-derived neuronal models.

Journal: Translational psychiatry

Authors' code: Ksilink/PhenoLink (LGPL-2.1), ksilink/notebooks (no license)

Status: code verified, 235 files readable, 3 matches

[27043] doi:10.1038/s41398-024-02958-0 [paper, data]

Hippocampal transcriptome-wide association study and pathway analysis of mitochondrial solute carriers in Alzheimer's disease.

Journal: Translational psychiatry

Status: code on request, 1 dataset cited

[27044] doi:10.1038/s41467-024-48257-6 [paper, data]

Planar cell polarity proteins mediate ketamine-induced restoration of glutamatergic synapses in prefrontal cortical neurons in a mouse model for chronic stress.

Journal: Nature communications

Status: data only, 1 dataset cited

[27045] doi:10.1038/s41467-024-48974-y [paper, data]

Engineering viral vectors for acoustically targeted gene delivery.

Journal: Nature communications

Status: data only, 1 dataset cited

[27046] doi:10.1038/s41467-024-49283-0 [paper, repository]

Heterogeneous associations of multiplexed environmental factors and multidimensional aging metrics.

Journal: Nature communications

Authors' code: SiriusPu/Heterogeneous-associations-of-multiplexed-environmental-factors-and-multidimensional-aging-metrics (no license), LCBC-UiO/VidalPineiro_BrainAge (GPL-3.0)

Status: code verified, 22 files readable, 4 matches

[27047] doi:10.1038/s41556-024-01428-5 [paper, repository]

Tumour microenvironment programming by an RNA-RNA-binding protein complex creates a druggable vulnerability in IDH-wild-type glioblastoma.

Journal: Nature cell biology

Authors' code: Zenodo 10836321 (CC-BY-4.0)

Status: code verified

[27048] doi:10.1038/s41598-024-62543-9 [paper, repository]

In situ brain tumor detection using a Raman spectroscopy system-results of a multicenter study.

Journal: Scientific reports

Authors' code: mr-sheg/orpl (LGPL-3.0)

Status: code verified, 43 files readable, 4 matches

[27049] doi:10.1073/pnas.2310433121 [paper, repository]

Brain representations of affective valence and intensity in sustained pleasure and pain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 11239415 (CC-BY-4.0), canlab/CanlabCore (GPL-2.0), cocoanlab/cocoanCORE (GPL-3.0)

Status: code verified, 2,127 files readable, 7 matches

[27050] doi:10.1073/pnas.2312293121 [paper, repository]

A unified framework for perceived magnitude and discriminability of sensory stimuli.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jingyang-zhou/WeberStevens_2024 (no license)

Status: code verified, 2 files readable

[27051] doi:10.1073/pnas.2321614121 [paper, repository]

Border cells without theta rhythmicity in the medial prefrontal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zhang-Sheng-Jia-Lab/mPFC_Code (no license)

Status: code verified, 1 file readable

[27052] doi:10.1093/braincomms/fcae166 [paper, repository]

The phase coherence of the neurovascular unit is reduced in Huntington's disease.

Journal: Brain communications

Authors' code: luphysics/MODA (GPL-3.0)

Status: code verified, 72 files readable, 3 matches

[27053] doi:10.1098/rstb.2023.0222 [paper, repository]

GluN2A- and GluN2B-containing pre-synaptic &lt;i&gt;N&lt;/i&gt;-methyl-d-aspartate receptors differentially regulate action potential-evoked Ca&lt;sup&gt;2+&lt;/sup&gt; influx via modulation of SK channels.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7202770 (no license)

Status: code found, still to be checked

[27054] doi:10.1098/rstb.2023.0229 [paper, repository]

Interplay of hippocampal long-term potentiation and long-term depression in enabling memory representations.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7249508 (no license)

Status: code found, still to be checked

[27055] doi:10.1098/rstb.2023.0234 [paper, repository]

Rapidly reversible persistent long-term potentiation inhibition by patient-derived brain tau and amyloid ß proteins.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7202773 (no license)

Status: code found, still to be checked

[27056] doi:10.1098/rstb.2023.0235 [paper, repository]

Equal levels of pre- and postsynaptic potentiation produce unequal outcomes.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: modeldb:2796 (no license), Rusakovlab/BrainCell (BSD-3-Clause), LeonidSavtchenko/Arachne (MIT)

Status: code verified, 193 files readable, 1 match

[27057] doi:10.1098/rstb.2023.0240 [paper, repository]

Enhanced long-term potentiation in the anterior cingulate cortex of tree shrew.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7202779 (no license)

Status: code found, still to be checked

[27058] doi:10.1098/rstb.2023.0241 [paper, repository]

The role of calcium stores in long-term potentiation and synaptic tagging and capture in mouse hippocampus.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7202782 (no license)

Status: code found, still to be checked

[27059] doi:10.1098/rstb.2023.0475 [paper, repository]

Cortical nitric oxide required for presynaptic long-term potentiation in the insular cortex.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7202785 (no license)

Status: code found, still to be checked

[27060] doi:10.1101/2024.06.10.598294 [paper, data]

Neural evidence that humans reuse strategies to solve new tasks

Journal: bioRxiv (preprint)

Status: data only, 8 datasets cited

[27061] doi:10.1111/ene.16374 [paper, data]

Association of APOE genotype and cerebrospinal fluid Aβ and tau biomarkers with cognitive and motor phenotype in amyotrophic lateral sclerosis.

Journal: European journal of neurology

Status: data only, 1 dataset cited

[27062] doi:10.1159/000539607 [paper, repository]

The Fetal Spleen in Low-Risk Pregnancies and prior to Preterm Birth: Observational Study of the Role of Anatomical and Functional Magnetic Resonance Imaging.

Journal: Fetal diagnosis and therapy

Authors' code: SVRTK/SVRTK (Apache-2.0)

Status: code verified, 69 files readable

[27063] doi:10.1162/imag_a_00190 [paper]

The relationship between SV2A levels, neural activity, and cognitive function in healthy humans: A [11C]UCB-J PET and fMRI study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[27064] doi:10.1162/imag_a_00191 [paper, repository]

Edge-centric network control on the human brain structural network.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: huiliii/edge_control (no license)

Status: code verified, 5 files readable

[27065] doi:10.1162/imag_a_00192 [paper]

Using respiratory challenges to modulate CSF movement across different physiological pathways: An fMRI study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[27066] doi:10.1186/s12888-024-05882-1 [paper, data]

Study Protocol: Global Research Initiative on the Neurophysiology of Schizophrenia (GRINS) project.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[27067] doi:10.12688/wellcomeopenres.22276.1 [paper, data]

Analysis of hippocampal synaptic function in a rodent model of early life stress.

Journal: Wellcome open research

Status: data only, 1 dataset cited

[27068] doi:10.1371/journal.pgen.1011310 [paper, repository]

Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1.

Journal: PLoS genetics

Authors' code: hansenlab/fahrner_kabuki2 (no license)

Status: code verified, 8 files readable, 4 matches

[27069] doi:10.1371/journal.pone.0302023 [paper, data]

Falling into the trap: A study of the cognitive neural mechanisms of immediate rewards impact on consumer attitudes toward forwarding perk advertisements.

Journal: PloS one

Status: data only, 1 dataset cited

[27070] doi:10.1371/journal.pone.0305283 [paper, data]

An open-source perceptual crossing device for investigating brain dynamics during human interaction.

Journal: PloS one

Status: data only, 2 datasets cited

[27071] doi:10.3389/fncel.2024.1408607 [paper, repository]

Astrocytic Calcium Signaling Toolkit (astroCaST): efficient analysis of dynamic astrocytic calcium events.

Journal: Frontiers in cellular neuroscience

Authors' code: janreising/astrocast (GPL-3.0)

Status: code verified, 44 files readable, 25 matches

[27072] doi:10.3389/fncel.2024.1414142 [paper, data]

A convenient model of serum-induced reactivity of human astrocytes to investigate astrocyte-derived extracellular vesicles.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[27073] doi:10.3390/biomedicines12061283 [paper, data]

Graphical Insight: Revolutionizing Seizure Detection with EEG Representation.

Journal: Biomedicines

Status: data only, 3 datasets cited

[27074] doi:10.7554/elife.91532 [paper, repository]

Deciphering the genetic code of neuronal type connectivity through bilinear modeling.

Journal: eLife

Authors' code: muqiao0626/Bilinear_Model (Apache-2.0)

Status: code verified, 10 files readable, 3 matches

[27075] doi:10.7554/elife.93094 [paper, data]

7,8-Dihydroxyflavone is a direct inhibitor of human and murine pyridoxal phosphatase.

Journal: eLife

Status: data only, 4 datasets cited

Sunday, 9 June 2024 (5 papers)

[27076] doi:10.1016/j.nicl.2024.103630 [paper, repository]

Increased whole-brain functional heterogeneity in psychosis during rest and task.

Journal: NeuroImage. Clinical

Authors' code: ColeLab/ActflowToolbox (MIT), ColeLab/ColeAnticevicNetPartition (other), fmriprep.org (no license)

Status: code verified, 103 files readable, 4 matches

[27077] doi:10.1016/j.xpro.2024.103117 [paper]

Protocol for in vivo analysis of pre- and post-synaptic protein function in mice.

Journal: STAR protocols

Status: code on request

[27078] doi:10.1038/s41598-024-63675-8 [paper, repository]

Deep learning restores speech intelligibility in multi-talker interference for cochlear implant users.

Journal: Scientific reports

Authors' code: OSF 5gnex (no license)

Status: code verified, 14 files readable, 6 matches

[27079] doi:10.1186/s13024-024-00732-w [paper, repository]

Elevated nuclear TDP-43 induces constitutive exon skipping.

Journal: Molecular neurodegeneration

Authors' code: rcarmen1/skipticexonscomparisons (no license)

Status: code verified, 5 files readable, 1 match

[27080] doi:10.1186/s13244-024-01690-z [paper]

Unlocking the potential: T1-weighed MRI as a powerful predictor of levodopa response in Parkinson's disease.

Journal: Insights into imaging

Status: code on request

Saturday, 8 June 2024 (12 papers)

[27081] doi:10.1007/s11682-024-00898-3 [paper, data]

Age exacerbates the negative effect of depression on executive functioning in racial and ethnic minorities.

Journal: Brain imaging and behavior

Status: data only, 1 dataset cited

[27082] doi:10.1016/j.bbi.2024.06.009 [paper, repository]

Social fear extinction susceptibility is associated with Microbiota-Gut-Brain axis alterations.

Journal: Brain, behavior, and immunity

Authors' code: thomazbastiaanssen/Tjazi (GPL-3.0), qiyunzhu/woltka (BSD-3-Clause)

Status: code verified, 59 files readable, 4 matches

[27083] doi:10.1016/j.bpsgos.2024.100345 [paper, repository]

Genetic Implication of Specific Glutamatergic Neurons of the Prefrontal Cortex in the Pathophysiology of Schizophrenia.

Journal: Biological psychiatry global open science

Authors' code: cetume/Tume_BP-GOS_2024 (other)

Status: code verified, 14 files readable, 8 matches

[27084] doi:10.1016/j.celrep.2024.114326 [paper, repository]

Hofbauer cells and fetal brain microglia share transcriptional profiles and responses to maternal diet-induced obesity.

Journal: Cell reports

Authors' code: rbatorsky/fetal-mac-edlow (no license), chris-mcginnis-ucsf/DoubletFinder (no license), phipsonlab/speckle (GPL-3.0), CostaLab/sc2marker (MIT)

Status: code verified, 86 files readable, 17 matches

[27085] doi:10.1016/j.isci.2024.110229 [paper, repository]

Laminar dissociation of feedforward and feedback in high-level ventral visual cortex during imagery and perception.

Journal: iScience

Authors' code: carricarte/Face-Scene_7T-MRI (no license), layerfMRI/LAYNII (BSD-3-Clause)

Status: code verified, 165 files readable, 6 matches

[27086] doi:10.1038/s41390-024-03288-z [paper, repository]

Associations between perinatal risk and physical health in pre-adolescence in the Adolescent Brain Cognitive Development (ABCD) Study®: the unexpected relationship with sleep disruption.

Journal: Pediatric research

Authors' code: ABCD-STUDY (no license)

Status: code verified

[27087] doi:10.1038/s41531-024-00701-6 [paper, repository]

Predictors of short-term anxiety outcome in subthalamic stimulation for Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: ibm.com/uk-en/analytics (no license)

Status: dead link

[27088] doi:10.1038/s41598-024-63685-6 [paper, repository]

Disparate nonlinear neural dynamics measured with different techniques in macaque and human V1.

Journal: Scientific reports

Authors' code: jingyang-zhou/vsdDynamics_2024 (no license)

Status: code verified, 6 files readable

[27089] doi:10.1038/s42003-024-06240-3 [paper, repository]

Modulation of serotonin transporter expression by escitalopram under inflammation.

Journal: Communications biology

Authors' code: Zenodo 8406456 (CC-BY-4.0)

Status: code verified, 48 files readable, 7 matches

[27090] doi:10.1038/s44271-024-00105-5 [paper, repository]

Cortical signatures of auditory looming bias show cue-specific adaptation between newborns and young adults.

Journal: Communications psychology

Authors' code: OSF 4gdy2 (no license)

Status: code verified, 15 files readable, 9 matches

[27091] doi:10.1101/2024.06.08.597305 [paper, repository]

Ultrasound system for precise neuromodulation of human deep brain circuits

Journal: bioRxiv (preprint)

Authors' code: Zenodo 15360987 (CC-BY-4.0), Zenodo 15360988 (CC-BY-4.0)

Status: code verified, 20 files readable

[27092] doi:10.1159/000539743 [paper, data]

Differences in Cognitive Trajectories of Dementia: Comparison of Alzheimer's Disease Dementia and Dementia with Lewy Bodies in a Korean Patient Cohort.

Journal: Dementia and geriatric cognitive disorders

Status: data only, 1 dataset cited

Friday, 7 June 2024 (30 papers, 12 on this page)

[27093] doi:10.1002/ana.26952 [paper, repository]

Accelerated Aging after Traumatic Brain Injury: An ENIGMA Multi-Cohort Mega-Analysis.

Journal: Annals of neurology

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 2 matches

[27094] doi:10.1016/j.celrep.2024.114334 [paper, data]

Tentonin 3 is a pore-forming subunit of a slow inactivation mechanosensitive channel.

Journal: Cell reports

Status: code on request, 1 dataset cited

[27095] doi:10.1016/j.dcn.2024.101405 [paper, repository]

Longitudinal associations between language network characteristics in the infant brain and school-age reading abilities are mediated by early-developing phonological skills.

Journal: Developmental cognitive neuroscience

Authors' code: xiyu-bnu/infant_restingstate_prediction (no license), XinyiTang16/LanNet_code (no license)

Status: code verified, 10 files readable, 4 matches

[27096] doi:10.1016/j.isci.2024.110195 [paper, data]

Spontaneous biases enhance generalization in the neonate brain.

Journal: iScience

Status: data only, 1 dataset cited

[27097] doi:10.1016/j.isci.2024.110199 [paper, data]

Sustained generation of neurons destined for neocortex with oxidative metabolic upregulation upon filamin abrogation.

Journal: iScience

Status: code on request, 1 dataset cited

[27098] doi:10.1016/j.xpro.2024.103097 [paper, repository]

Protocol to fabricate a self-adhesive and long-term stable hydrogel for sleep EEG recording.

Journal: STAR protocols

Authors' code: Zenodo 10059079 (CC-BY-4.0)

Status: code verified, 6 files readable

[27099] doi:10.1038/s41467-024-48755-7 [paper, repository]

Parvalbumin-expressing basal forebrain neurons mediate learning from negative experience.

Journal: Nature communications

Authors' code: hangyabalazs/PV_Pavlovian_analysis (CC0-1.0), Zenodo 10808341 (CC-BY-4.0)

Status: code verified, 72 files readable, 13 matches

[27100] doi:10.1038/s41467-024-48839-4 [paper, repository]

Evolution of connectivity architecture in the Drosophila mushroom body.

Journal: Nature communications

Authors' code: evavigato/Ellis-et-al-2024 (no license)

Status: code verified, 7 files readable, 3 matches

[27101] doi:10.1038/s41467-024-48925-7 [paper, repository]

Stabilization of V1 interneuron-motor neuron connectivity ameliorates motor phenotype in a mouse model of ALS.

Journal: Nature communications

Authors' code: Zenodo 10956898 (CC-BY-4.0), allodi-lab/hesyt1-spinal-and-systemic-administration (MIT)

Status: code verified, 36 files readable, 10 matches

[27102] doi:10.1038/s41467-024-49196-y [paper, repository]

Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target.

Journal: Nature communications

Authors' code: KevinMenden/scaden (MIT), imsb-uke/MAXOMOD_Pipeline (MIT)

Status: code verified, 135 files readable, 18 matches

[27103] doi:10.1038/s41467-024-49198-w [paper, repository]

Protein translation rate determines neocortical neuron fate.

Journal: Nature communications

Authors' code: qoldt/IRE1aKO_Polysome_RNAseq (no license)

Status: code verified, 2 files readable, 2 matches

[27104] doi:10.1038/s41467-024-49263-4 [paper, repository]

Revealing brain cell-stratified causality through dissecting causal variants according to their cell-type-specific effects on gene expression.

Journal: Nature communications

Authors' code: rhhao/csMR (GPL-3.0), Zenodo 11079245 (CC-BY-4.0)

Status: code verified, 30 files readable, 10 matches

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