Every paper, by date: page 122

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 122 of 200: 7 June 2024 to 1 June 2024.

Friday, 7 June 2024 (30 papers, 18 on this page)

[27105] doi:10.1038/s41593-024-01666-8 [paper, repository]

Developmental origin of oligodendrocytes determines their function in the adult brain.

Journal: Nature neuroscience

Authors' code: Castelo-Branco-lab/DTablation2023 (no license)

Status: empty repository

[27106] doi:10.1038/s41593-024-01675-7 [paper, repository]

A recurrent network model of planning explains hippocampal replay and human behavior.

Journal: Nature neuroscience

Authors' code: KrisJensen/planning_code (no license)

Status: code verified, 57 files readable, 11 matches

[27107] doi:10.1038/s41598-024-63727-z [paper, data]

Auditory gamma-band entrainment enhances default mode network connectivity in dementia patients.

Journal: Scientific reports

Status: data only, 2 datasets cited

[27108] doi:10.1038/s42003-024-06392-2 [paper, repository]

Age-related differences in network controllability are mitigated by redundancy in large-scale brain networks.

Journal: Communications biology

Authors' code: WilliamStanford/ControllabilityInAging (no license)

Status: code verified, 7 files readable, 1 match

[27109] doi:10.1038/s42003-024-06399-9 [paper, repository]

Fronto-thalamic networks and the left ventral thalamic nuclei play a key role in aphasia after thalamic stroke.

Journal: Communications biology

Authors' code: netstim/leaddbs (GPL-3.0), dorianps/LESYMAP (Apache-2.0)

Status: code verified, 2,040 files readable, 9 matches

[27110] doi:10.1038/s42003-024-06405-0 [paper, repository]

Semantic associative abilities and executive control functions predict novelty and appropriateness of idea generation.

Journal: Communications biology

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 1 match

[27111] doi:10.1126/sciadv.adj0385 [paper, repository]

A dynamic in vitro model of Down syndrome neurogenesis with trisomy 21 gene dosage correction.

Journal: Science advances

Authors' code: github.uconn.edu/sfp-lab/t21-xist (no license), Zenodo 10689222 (CC-BY-NC-SA-4.0)

Status: code verified, 6 files readable, 8 matches

[27112] doi:10.1126/sciadv.adk9000 [paper, data]

Orco-dependent survival of odorant receptor neurons in ants.

Journal: Science advances

Status: data only, 1 dataset cited

[27113] doi:10.1186/s12883-024-03685-1 [paper]

Single-cell RNA-seq reveals the role of YAP1 in prefrontal cortex microglia in depression.

Journal: BMC neurology

Status: code on request

[27114] doi:10.1186/s12964-024-01686-8 [paper, repository]

Altered glia-neuron communication in Alzheimer's Disease affects WNT, p53, and NFkB Signaling determined by snRNA-seq.

Journal: Cell communication and signaling : CCS

Authors' code: lasseignelab/230313_TS_CCCinHumanAD (MIT), Zenodo 10214497 (MIT), Zenodo 10211622 (CC-BY-4.0)

Status: code verified, 47 files readable, 16 matches

[27115] doi:10.1186/s13293-024-00622-2 [paper, repository]

Relationship between sex biases in gene expression and sex biases in autism and Alzheimer's disease.

Journal: Biology of sex differences

Authors' code: jdlabteam/gtex_peper_final_code (no license)

Status: code verified, 23 files readable, 15 matches

[27116] doi:10.1242/jcs.261828 [paper, repository]

pHusion - a robust and versatile toolset for automated detection and analysis of exocytosis.

Journal: Journal of cell science

Authors' code: EllenClelia/exocytosis-to-share-with-DA (no license), guptonlab.web.unc.edu/phusion (no license), sites.imagej.net/christopheleterrier/plugins (no license)

Status: code verified, 137 files readable, 2 matches

[27117] doi:10.1371/journal.pone.0300779 [paper, data]

Lack of effects of online HD-tDCS over the left or right DLPFC in an associative memory and metamemory monitoring task.

Journal: PloS one

Status: data only, 1 dataset cited

[27118] doi:10.1371/journal.pone.0301177 [paper, data]

Identification of candidate chemosensory genes in the antennal transcriptome of Monolepta signata.

Journal: PloS one

Status: data only, 1 dataset cited

[27119] doi:10.1523/eneuro.0286-23.2024 [paper, repository]

Large Individual Differences in Functional Connectivity in the Context of Major Depression and Antidepressant Pharmacotherapy.

Journal: eNeuro

Authors' code: OSF 79gv8 (no license), ColeLab/TaskFCRemoveMeanActivity (MIT)

Status: code verified, 41 files readable, 9 matches

[27120] doi:10.2147/nss.s459136 [paper, repository]

Exploring the Shared Genetic Architecture Between Obstructive Sleep Apnea and Body Mass Index.

Journal: Nature and science of sleep

Authors' code: bulik/ldsc (GPL-3.0), zhenin/HDL (no license), huwenboshi/hess (GPL-3.0), JonJala/mtag (GPL-3.0)

Status: code verified, 114 files readable, 8 matches

[27121] doi:10.3390/biomedicines12061273 [paper, data]

Oxytocin and Vasopressin Gene Expression in the Brain as Potential Biomarkers for Cannabidiol Therapeutic Efficacy.

Journal: Biomedicines

Status: data only, 1 dataset cited

[27122] doi:10.3390/membranes14060137 [paper, repository]

Characterizing Cellular Physiological States with Three-Dimensional Shape Descriptors for Cell Membranes.

Journal: Membranes

Authors' code: Zenodo 11103327 (CC-BY-4.0)

Status: code verified

Thursday, 6 June 2024 (28 papers)

[27123] doi:10.1007/s00432-024-05797-0 [paper, data]

SRSF9 promotes cell proliferation and migration of glioblastoma through enhancing CDK1 expression.

Journal: Journal of cancer research and clinical oncology

Status: data only, 1 dataset cited

[27124] doi:10.1007/s12264-024-01224-z [paper, data]

Quantitative Expression of Latent Disease Factors in Individuals Associated with Psychopathology Dimensions and Treatment Response.

Journal: Neuroscience bulletin

Status: data only, 1 dataset cited

[27125] doi:10.1016/j.bbih.2024.100798 [paper, data]

In a circuit necessary for cognition and emotional affect, Alzheimer's-like pathology associates with neuroinflammation, cognitive and motivational deficits in the young adult TgF344-AD rat.

Journal: Brain, behavior, & immunity - health

Status: data only, 1 dataset cited

[27126] doi:10.1016/j.crmeth.2024.100791 [paper, repository]

ElecFeX is a user-friendly toolbox for efficient feature extraction from single-cell electrophysiological recordings.

Journal: Cell reports methods

Authors' code: XinyueMa-neuro/ElecFeX (GPL-3.0), XinyueMa-neuro/ElecFeX-MaEtAl2024 (CC-BY-4.0)

Status: code verified, 10 files readable, 5 matches

[27127] doi:10.1016/j.dcn.2024.101403 [paper, data]

Growing Up Together in Society (GUTS): A team science effort to predict societal trajectories in adolescence and young adulthood.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[27128] doi:10.1016/j.heliyon.2024.e32609 [paper, repository]

Brain-machine interactive neuromodulation research tool with edge AI computing.

Journal: Heliyon

Authors' code: gaosiy/research-tool-seizure-detection (no license)

Status: code verified, 9 files readable, 2 matches

[27129] doi:10.1016/j.isci.2024.110153 [paper, data]

Decomposing loss aversion from a single neural signal.

Journal: iScience

Status: code on request, 1 dataset cited

[27130] doi:10.1021/acsomega.3c09938 [paper, data]

Transcriptome Study of rd1Mouse Brain and Association with Parkinson's Disease.

Journal: ACS omega

Status: data only, 1 dataset cited

[27131] doi:10.1038/s41398-024-02971-3 [paper, data]

General and anxiety-linked influences of acute serotonin reuptake inhibition on neural responses associated with attended visceral sensation.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[27132] doi:10.1038/s41467-024-48462-3 [paper]

Tau propagation in the brain olfactory circuits is associated with smell perception changes in aging.

Journal: Nature communications

Status: code on request

[27133] doi:10.1038/s41467-024-48648-9 [paper, repository]

The hippocampus dissociates present from past and future goals.

Journal: Nature communications

Authors' code: OSF 3kt98 (no license)

Status: empty repository

[27134] doi:10.1038/s41467-024-49133-z [paper, repository]

A single-cell and spatial RNA-seq database for Alzheimer's disease (ssREAD).

Journal: Nature communications

Authors' code: OSU-BMBL/ssread (MIT), OSU-BMBL/ssread-backend (MIT)

Status: code verified, 49 files readable

[27135] doi:10.1038/s41467-024-49139-7 [paper, data]

m6a methylation orchestrates IMP1 regulation of microtubules during human neuronal differentiation.

Journal: Nature communications

Status: data only, 2 datasets cited

[27136] doi:10.1038/s41467-024-49206-z [paper, repository]

Development and organization of the retinal orientation selectivity map.

Journal: Nature communications

Authors' code: Llamero/Light_Color_and_Intensity_Datalogger (Apache-2.0), TiriacLabCodeShare/OSproject (no license), Zenodo 11236270 (CC-BY-4.0)

Status: code verified, 24 files readable, 1 match

[27137] doi:10.1038/s41467-024-49226-9 [paper, repository]

Months-long tracking of neuronal ensembles spanning multiple brain areas with Ultra-Flexible Tentacle Electrodes.

Journal: Nature communications

Authors' code: buzsakilab/buzcode (GPL-3.0), michael-zugaro/FMAToolbox (gpl), Neurotechnology-at-ETH-Zurich/UFTE_paper (no license), Zenodo 11246326 (CC-BY-4.0), Zenodo 11259136 (CC-BY-4.0)

Status: code verified, 2,305 files readable, 11 matches

[27138] doi:10.1038/s41598-024-63566-y [paper, repository]

Long-term impact of digital media on brain development in children.

Journal: Scientific reports

Authors' code: samniv/screentime-and-brain (no license)

Status: empty repository, 1 file readable

[27139] doi:10.1038/s41598-024-63758-6 [paper, data]

Motor imagery drives the effects of combined action observation and motor imagery on corticospinal excitability for coordinative lower-limb actions.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27140] doi:10.1111/jsr.14258 [paper, data]

The daily reciprocal associations between electroencephalography measured sleep and affect.

Journal: Journal of sleep research

Status: data only, 1 dataset cited

[27141] doi:10.1140/epjc/s10052-024-12868-6 [paper, repository]

Decorrelation using optimal transport.

Journal: The European physical journal. C, Particles and fields

Authors' code: malteal/ot-decorrelation (MIT)

Status: code verified, 16 files readable, 2 matches

[27142] doi:10.1371/journal.pone.0299275 [paper, repository]

Assessing the effects of an 8-week mindfulness training program on neural oscillations and self-reports during meditation practice.

Journal: PloS one

Authors' code: OSF r8739 (no license)

Status: code verified, 5 files readable, 4 matches

[27143] doi:10.1371/journal.pone.0303959 [paper, data]

The investigation of dysregulated visual perceptual organization in adults with autism spectrum disorders with phase-amplitude coupling and directed connectivity.

Journal: PloS one

Status: data only, 1 dataset cited

[27144] doi:10.21203/rs.3.rs-4464161/v1 [paper, repository]

Is noxious stimulus-evoked electroencephalography response a reliable, valid, and interpretable outcome measure to assess analgesic efficacy in neonates? A systematic review and individual participant data (IPD) meta-analysis protocol

Journal: Research Square (preprint)

Authors' code: OSF 6uhze (no license)

Status: empty repository

[27145] doi:10.3389/fncom.2024.1410335 [paper, repository]

Pathological cell assembly dynamics in a striatal MSN network model.

Journal: Frontiers in computational neuroscience

Authors' code: adampdp/MSNnetwork (no license), sbi-dev.github.io/sbi (no license), vladscript/finderspiker (MIT)

Status: code verified, 310 files readable, 2 matches

[27146] doi:10.3390/brainsci14060584 [paper, repository]

Temporal-Posterior Alpha Power in Resting-State Electroencephalography as a Potential Marker of Complex Childhood Trauma in Institutionalized Adolescents.

Journal: Brain sciences

Authors' code: OSF kf4x5 (no license)

Status: code verified, 2 files readable

[27147] doi:10.3390/diagnostics14111199 [paper, repository]

Deep Learning-Based High-Resolution Magnetic Resonance Angiography (MRA) Generation Model for 4D Time-Resolved Angiography with Interleaved Stochastic Trajectories (TWIST) MRA in Fast Stroke Imaging.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: junyanz/CycleGAN (BSD-3-Clause)

Status: code verified, 8 files readable

[27148] doi:10.3390/s24113696 [paper, data]

Investigation of Appropriate Scaling of Networks and Images for Convolutional Neural Network-Based Nerve Detection in Ultrasound-Guided Nerve Blocks.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[27149] doi:10.3390/tomography10060068 [paper, repository]

Causal Forest Machine Learning Analysis of Parkinson's Disease in Resting-State Functional Magnetic Resonance Imaging.

Journal: Tomography (Ann Arbor, Mich.)

Authors' code: GabrielSolana29/fmri_causalForest (no license)

Status: code verified, 10 files readable, 6 matches

[27150] doi:10.7554/elife.92620 [paper, repository]

Rule-based modulation of a sensorimotor transformation across cortical areas.

Journal: eLife

Authors' code: yitingchang/cross_modal_task (MIT)

Status: code verified, 47 files readable, 28 matches

Wednesday, 5 June 2024 (53 papers)

[27151] doi:10.1002/advs.202307804 [paper, data]

Minor Spliceosomal 65K/RNPC3 Interacts with ANKRD11 and Mediates HDAC3-Regulated Histone Deacetylation and Transcription.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[27152] doi:10.1002/advs.202309889 [paper, repository]

Polygenic Score for Conscientiousness Is a Protective Factor for Reversion from Mild Cognitive Impairment to Normal Cognition.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 4 matches

[27153] doi:10.1002/alz.13870 [paper, data]

Mapping the interplay of atrial fibrillation, brain structure, and cognitive dysfunction.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[27154] doi:10.1002/hipo.23619 [paper, repository]

Low rate hippocampal delay period activity encodes behavioral experience.

Journal: Hippocampus

Authors' code: MarkosAthanasiadis/patternsfromattacks (GPL-3.0)

Status: code verified, 23 files readable, 5 matches

[27155] doi:10.1007/s00429-024-02811-6 [paper, data]

Selective activations and functional connectivities to the sight of faces, scenes, body parts and tools in visual and non-visual cortical regions leading to the human hippocampus.

Journal: Brain structure & function

Status: data only, 2 datasets cited

[27156] doi:10.1007/s12264-024-01234-x [paper, data]

Compensation or Preservation? Different Roles of Functional Lateralization in Speech Perception of Older Non-musicians and Musicians.

Journal: Neuroscience bulletin

Status: data only, 1 dataset cited

[27157] doi:10.1016/j.celrep.2024.114309 [paper]

Lineage specification in glioblastoma is regulated by METTL7B.

Journal: Cell reports

Status: code on request

[27158] doi:10.1016/j.celrep.2024.114312 [paper, repository]

Representation of rhythmic chunking in striatum of mice executing complex continuous movement sequences.

Journal: Cell reports

Authors' code: Zenodo 11201270 (CC-BY-4.0), hirokame/chunk_neuron (GPL-3.0)

Status: code verified, 663 files readable

[27159] doi:10.1016/j.isci.2024.110172 [paper, repository]

Zebrafish models of candidate human epilepsy-associated genes provide evidence of hyperexcitability.

Journal: iScience

Authors' code: Zenodo 11165681 (CC-BY-4.0), Zenodo 11166076 (CC-BY-4.0), Zenodo 11165954 (CC-BY-4.0), podurilab/zebrafish-lfp (no license), podurilab/zebrafish-rnaseq (no license), podurilab/zebrafish-neuron-counter (no license)

Status: code verified, 12 files readable

[27160] doi:10.1016/j.isci.2024.110176 [paper]

Chronic modulation of cAMP signaling elicits synaptic scaling irrespective of activity.

Journal: iScience

Status: code on request

[27161] doi:10.1016/j.isci.2024.110178 [paper]

Immunosuppression-induced Zika virus reactivation causes brain inflammation and behavioral deficits in mice.

Journal: iScience

Status: code on request

[27162] doi:10.1016/j.omton.2024.200824 [paper]

Enhanced treatment of breast cancer brain metastases with oncolytic virus expressing anti-CD47 antibody and temozolomide.

Journal: Molecular therapy. Oncology

Status: code on request

[27163] doi:10.1016/j.smhl.2024.100498 [paper, data]

Ultra low-power, wearable, accelerated shallow-learning fall detection for elderly at-risk persons.

Journal: Smart health (Amsterdam, Netherlands)

Status: data only, 1 dataset cited

[27164] doi:10.1016/j.xcrm.2024.101593 [paper]

Ketogenic diet administration later in life improves memory by modifying the synaptic cortical proteome via the PKA signaling pathway in aging mice.

Journal: Cell reports. Medicine

Status: code on request

[27165] doi:10.1016/j.xpro.2024.103110 [paper, repository]

Protocol for calcium imaging and analysis of hippocampal CA1 activity evoked by non-spatial stimuli.

Journal: STAR protocols

Authors' code: Zenodo 11118231 (CC-BY-4.0)

Status: code verified, 19 files readable, 3 matches

[27166] doi:10.1021/acs.langmuir.4c01107 [paper, data]

Thermosensory Spiking Activity of Proteinoid Microspheres Cross-Linked by Actin Filaments.

Journal: Langmuir : the ACS journal of surfaces and colloids

Status: data only, 1 dataset cited

[27167] doi:10.1038/s41380-024-02629-y [paper, repository]

iPSC-derived hindbrain organoids to evaluate escitalopram oxalate treatment responses targeting neuropsychiatric symptoms in Alzheimer's disease.

Journal: Molecular psychiatry

Authors' code: alopezmontes/organoid_segmentation (no license)

Status: code verified, 2 files readable, 1 match

[27168] doi:10.1038/s41467-024-47277-6 [paper, data]

Planum temporale asymmetry in newborn monkeys predicts the future development of gestural communication's handedness.

Journal: Nature communications

Status: data only, 1 dataset cited

[27169] doi:10.1038/s41467-024-49128-w [paper, repository]

General mechanisms of task engagement in the primate frontal cortex.

Journal: Nature communications

Authors' code: Zenodo 10960864 (CC-BY-4.0), jangrohn/macaqueengagment (no license)

Status: code verified, 16 files readable

[27170] doi:10.1038/s41467-024-49129-9 [paper]

Coexistence of state, choice, and sensory integration coding in barrel cortex LII/III.

Journal: Nature communications

Status: code on request

[27171] doi:10.1038/s41467-024-49205-0 [paper, repository]

Postmortem imaging reveals patterns of medial temporal lobe vulnerability to tau pathology in Alzheimer's disease.

Journal: Nature communications

Authors' code: sadhana-r/exvivo_tau_atlas_scripts (no license), pyushkevich/tau_recon_scripts (no license), Zenodo 11123538 (CC-BY-4.0), Zenodo 11123539 (CC-BY-4.0)

Status: code verified, 69 files readable, 3 matches

[27172] doi:10.1038/s41526-024-00405-4 [paper, repository]

Effect of artificial gravity on neurocognitive performance during head-down tilt bedrest.

Journal: NPJ microgravity

Authors' code: figshare 22246138 (CC-BY-4.0)

Status: code verified, 15 files readable, 5 matches

[27173] doi:10.1038/s41556-024-01436-5 [paper, data]

MFSD1 with its accessory subunit GLMP functions as a general dipeptide uniporter in lysosomes.

Journal: Nature cell biology

Status: data only, 6 datasets cited

[27174] doi:10.1038/s41586-024-07516-8 [paper, data]

Senescent glia link mitochondrial dysfunction and lipid accumulation.

Journal: Nature

Status: data only, 2 datasets cited

[27175] doi:10.1038/s41586-024-07523-9 [paper, repository]

Descending networks transform command signals into population motor control.

Journal: Nature

Authors' code: NeLy-EPFL/twoppp (no license), NeLy-EPFL/dn_networks (MIT)

Status: code verified, 129 files readable, 40 matches

[27176] doi:10.1038/s41597-024-03390-1 [paper, repository]

Individual Brain Charting dataset extension, third release for movie watching and retinotopy data.

Journal: Scientific data

Authors' code: individual-brain-charting/public_protocols (BSD-3-Clause), individual-brain-charting/public_analysis_code (BSD-3-Clause), individual-brain-charting/api (no license)

Status: code verified, 424 files readable, 13 matches

[27177] doi:10.1038/s41597-024-03421-x [paper, repository]

A Transcriptomic Dataset of Embryonic Murine Telencephalon.

Journal: Scientific data

Authors' code: hgdownload.soe.ucsc.edu/goldenpath (no license), r-project.org/help.html (no license), gsea-msigdb.org/gsea/msigdb (no license)

Status: code verified

[27178] doi:10.1038/s41598-024-63301-7 [paper]

Estimating individual trajectories of structural and cognitive decline in mild cognitive impairment for early prediction of progression to dementia of the Alzheimer's type.

Journal: Scientific reports

Status: code on request

[27179] doi:10.1038/s41598-024-63483-0 [paper, repository]

Anisotropic longitudinal water proton relaxation in white matter investigated ex vivo in porcine spinal cord with sample rotation.

Journal: Scientific reports

Authors' code: doi:10.7910/dvn/euavix (no license)

Status: code found, still to be checked

[27180] doi:10.1038/s42003-024-06391-3 [paper, repository]

Normative modelling of molecular-based functional circuits captures clinical heterogeneity transdiagnostically in psychiatric patients.

Journal: Communications biology

Authors' code: Zenodo 5138031 (other-open)

Status: code verified, 5 files readable

[27181] doi:10.1038/s44321-024-00083-5 [paper, data]

Aggregation-resistant alpha-synuclein tetramers are reduced in the blood of Parkinson's patients.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[27182] doi:10.1073/pnas.2403054121 [paper, data]

Protective function and differentiation cues of brain-resident CD8+ T cells during surveillance of latent <i>Toxoplasma gondii</i> infection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27183] doi:10.1098/rsos.231374 [paper, repository]

STEP: extraction of underlying physics with robust machine learning.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7247039 (no license)

Status: code found, still to be checked

[27184] doi:10.1098/rsos.231420 [paper, repository]

Short-term plasticity as 'energetic memory' of ion channel components of action potential.

Journal: Royal Society open science

Authors' code: beastraban/HH_With_Piston (CC0-1.0), beastraban/HH_With_Pistona (no license), Zenodo 10947417 (CC-BY-4.0)

Status: code verified, 4 files readable

[27185] doi:10.1098/rsos.231767 [paper, repository]

Optimal sampling of spatial patterns improves deep learning-based early warning signals of critical transitions.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7214469 (no license)

Status: code found, still to be checked

[27186] doi:10.1101/2024.06.04.597334 [paper, repository]

The dominance of large-scale phase dynamics in human cortex, from delta to gamma

Journal: bioRxiv (preprint)

Authors' code: duguelab/traveling-wave-analysis (GPL-3.0)

Status: code verified, 12 files readable, 7 matches

[27187] doi:10.1126/sciadv.adn1640 [paper, repository]

Gene regulatory landscape of cerebral cortex folding.

Journal: Science advances

Authors' code: taiyun/corrplot (other)

Status: code verified, 23 files readable

[27188] doi:10.1159/000538986 [paper, data]

Brain MRI Injury Patterns across Gestational Age among Preterm Infants with Perinatal Asphyxia.

Journal: Neonatology

Status: data only, 1 dataset cited

[27189] doi:10.1162/imag_a_00182 [paper, repository]

Extracting reproducible subject-specific MEG evoked responses with independent component analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: AaltoImagingLanguage/comICA (no license)

Status: code verified, 3 files readable

[27190] doi:10.1162/imag_a_00184 [paper, repository]

Time-varying functional connectivity as Wishart processes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OnnoKampman/FCEst-benchmarking (Apache-2.0)

Status: code verified, 123 files readable, 18 matches

[27191] doi:10.1186/s12864-024-10469-x [paper, repository]

HyperGCN: an effective deep representation learning framework for the integrative analysis of spatial transcriptomics data.

Journal: BMC genomics

Authors' code: JinmiaoChenLab/SEDR (MIT), hongleir/SpaceFlow (MIT), chonghua-1983/HyperGCN (no license)

Status: code verified, 32 files readable, 4 matches

[27192] doi:10.1186/s12974-024-03130-7 [paper]

Microglia undergo sex-dimorphic transcriptional and metabolic rewiring during aging.

Journal: Journal of neuroinflammation

Status: data only

[27193] doi:10.1227/neu.0000000000003012 [paper, repository]

Resting State Functional Networks in Gliomas: Validation With Direct Electric Stimulation Using a New Tool for Planning Brain Resections.

Journal: Neurosurgery

Authors' code: CIMeC-MRI-Lab/ReStNeuMap (GNU)

Status: code verified, 208 files readable, 6 matches

[27194] doi:10.1371/journal.pone.0304943 [paper, data]

Stitched vision transformer for age-related macular degeneration detection using retinal optical coherence tomography images.

Journal: PloS one

Status: data only, 1 dataset cited

[27195] doi:10.1523/eneuro.0313-23.2024 [paper, repository]

MousiPLIER: A Mouse Pathway-Level Information Extractor Model.

Journal: eNeuro

Authors' code: greenelab/mousiplier (BSD-3-Clause)

Status: code verified, 29 files readable, 4 matches

[27196] doi:10.18632/aging.205903 [paper, data]

Tsc22d3 promotes morphine tolerance in mice through the GPX4 ferroptosis pathway.

Journal: Aging

Status: data only, 1 dataset cited

[27197] doi:10.3389/fnins.2024.1394478 [paper, data]

Preserved VPS13A distribution and expression in Huntington's disease: divergent mechanisms of action for similar movement disorders?

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[27198] doi:10.3389/fnins.2024.1412509 [paper, repository]

Medial prefrontal cortex suppresses reward-seeking behavior with risk of punishment by reducing sensitivity to reward.

Journal: Frontiers in neuroscience

Authors' code: monami-nishio/PFC-punishment (no license)

Status: code verified, 29 files readable

[27199] doi:10.3389/fnrgo.2024.1286586 [paper, repository]

Optimizing spatial specificity and signal quality in fNIRS: an overview of potential challenges and possible options for improving the reliability of real-time applications.

Journal: Frontiers in neuroergonomics

Authors' code: nirx/devfOLD (no license), DOT-HUB/ArrayDesigner (GPL-3.0)

Status: code verified, 30 files readable, 1 match

[27200] doi:10.3389/fnrgo.2024.1411305 [paper, repository]

Visuo-haptic prediction errors: a multimodal dataset (EEG, motion) in BIDS format indexing mismatches in haptic interaction.

Journal: Frontiers in neuroergonomics

Authors' code: lukasgehrke/2021-Scientific-Data-Prediction-Error (no license)

Status: dead link

[27201] doi:10.3390/ani14111691 [paper, repository]

Observation of Agonistic Behavior in Pacific White Shrimp (<i>Litopenaeus vannamei</i>) and Transcriptome Analysis.

Journal: Animals : an open access journal from MDPI

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[27202] doi:10.3390/brainsci14060579 [paper, data]

The Utility of Heartrate and Heartrate Variability Biofeedback for the Improvement of Interoception across Behavioural, Physiological and Neural Outcome Measures: A Systematic Review.

Journal: Brain sciences

Status: data only, 1 dataset cited

[27203] doi:10.7717/peerj.17451 [paper, data]

Electrocortical theta activity may reflect sensory prediction errors during adaptation to a gradual gait perturbation.

Journal: PeerJ

Status: data only, 1 dataset cited

Tuesday, 4 June 2024 (19 papers)

[27204] doi:10.1016/j.heliyon.2024.e32375 [paper, repository]

Predicting cerebrovascular age and its clinical relevance: Modeling using 3D morphological features of brain vessels.

Journal: Heliyon

Authors' code: Hwan-ho/BrainVesselFeatureExtractor (no license)

Status: code verified, 1 file readable

[27205] doi:10.1016/j.isci.2024.110170 [paper, data]

Pleiotropic brain function of whirlin identified by a novel mutation.

Journal: iScience

Status: data only, 1 dataset cited

[27206] doi:10.1016/j.isci.2024.110173 [paper, repository]

Choice-dependent delta-band neural trajectory during semantic category decision making in the human brain.

Journal: iScience

Authors' code: Zenodo 11162604 (CC-BY-4.0), Zenodo 11162605 (CC-BY-4.0)

Status: code verified, 8 files readable, 2 matches

[27207] doi:10.1016/j.neuron.2024.05.009 [paper, repository]

Cell-class-specific electric field entrainment of neural activity.

Journal: Neuron

Authors' code: anastassiou-team/celltype_brainstim_invitro (no license), anastassiou-team/celltype_brainstim_insilico (no license), AllenInstitute/MIES (BSD-2-Clause), Zenodo 11111558 (CC-BY-4.0), Zenodo 11111563 (CC-BY-4.0)

Status: code verified, 4,058 files readable, 1 match

[27208] doi:10.1038/s41386-024-01885-4 [paper, data]

Smoking-informed methylation and expression QTLs in human brain and colocalization with smoking-associated genetic loci.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[27209] doi:10.1038/s41467-024-48748-6 [paper, repository]

An implantable piezoelectric ultrasound stimulator (ImPULS) for deep brain activation.

Journal: Nature communications

Authors' code: Zenodo 11094313 (CC-BY-4.0)

Status: code verified, 3 files readable

[27210] doi:10.1038/s41467-024-48781-5 [paper, repository]

Systematic evaluation of fMRI data-processing pipelines for consistent functional connectomics.

Journal: Nature communications

Authors' code: thomasyeolab/cbig (MIT), yetianmed/subcortex (MIT), bagrow/network-portrait-divergence (MIT), stdimitr/topological_filtering_networks (GPL-3.0), sites.google.com/site/bctnet (no license)

Status: code verified, 2,089 files readable, 6 matches

[27211] doi:10.1038/s41593-024-01672-w [paper, repository]

Cognitive control training with domain-general response inhibition does not change children's brains or behavior.

Journal: Nature neuroscience

Authors' code: DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause), ucjuliy/BIGDEVBRAINTRAIN (no license)

Status: code verified, 55 files readable, 17 matches

[27212] doi:10.1038/s41594-024-01320-8 [paper, repository]

Mini-heterochromatin domains constrain the cis-regulatory impact of SVA transposons in human brain development and disease.

Journal: Nature structural & molecular biology

Authors' code: raquelgarza/XDP_Horvath_2023 (no license)

Status: code verified, 8 files readable, 5 matches

[27213] doi:10.1038/s41597-024-03418-6 [paper, data]

Multiparametric MRI dataset for susceptibility-based radiomic feature extraction and analysis.

Journal: Scientific data

Status: data only, 1 dataset cited

[27214] doi:10.1038/s41598-024-63320-4 [paper, repository]

Representations of imaginary scenes and their properties in cortical alpha activity.

Journal: Scientific reports

Authors' code: OSF vxhtw (no license)

Status: code verified, 14 files readable, 8 matches

[27215] doi:10.1038/s41598-024-63716-2 [paper, repository]

Brain network topology and its cognitive impact in adult glioma survivors.

Journal: Scientific reports

Authors' code: OSF 7t3xu (no license)

Status: code verified, 3 files readable, 5 matches

[27216] doi:10.1073/pnas.2320064121 [paper, data]

Decoding transcriptomic signatures of cysteine string protein alpha-mediated synapse maintenance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27217] doi:10.1186/s12964-024-01691-x [paper, data]

A rare olive compound oleacein functions as a TrkB agonist and mitigates neuroinflammation both in vitro and in vivo.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[27218] doi:10.3389/fnagi.2024.1411320 [paper, data]

Bioinformatics analysis of the potential receptor and therapeutic drugs for Alzheimer's disease with comorbid Parkinson's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[27219] doi:10.3389/fphar.2024.1419044 [paper, data]

Crebanine, an aporphine alkaloid, induces cancer cell apoptosis through PI3K-Akt pathway in glioblastoma multiforme.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[27220] doi:10.3389/fradi.2024.1385424 [paper, repository]

Automated intracranial vessel segmentation of 4D flow MRI data in patients with atherosclerotic stenosis using a convolutional neural network.

Journal: Frontiers in radiology

Authors' code: drsol1986/AI-Segmentation- (MIT)

Status: code verified, 5 files readable, 2 matches

[27221] doi:10.7554/elife.90600 [paper, repository]

Adult-born granule cells modulate CA2 network activity during retrieval of developmental memories of the mother.

Journal: eLife

Authors' code: einaraz/SharpWaveRipple (MIT), Zenodo 7592606 (other-open)

Status: code verified, 6 files readable

[27222] doi:10.7554/elife.94561 [paper, repository]

Tracking the neurodevelopmental trajectory of beta band oscillations with optically pumped magnetometer-based magnetoencephalography.

Journal: eLife

Authors' code: LukasRier/RierRhodes_2024_Neurodevelopmental_OPMMEG (MIT)

Status: code verified, 117 files readable, 12 matches

Monday, 3 June 2024 (38 papers)

[27223] doi:10.1002/aisy.202400261 [paper, data]

Remotely Controlled 3D-Engineered Scaffolds for Biomimetic In Vitro Investigations on Brain Cell Cocultures.

Journal: Advanced intelligent systems (Weinheim an der Bergstrasse, Germany)

Status: data only, 1 dataset cited

[27224] doi:10.1016/j.bbi.2024.05.038 [paper, repository]

Microglia contribute to methamphetamine reinforcement and reflect persistent transcriptional and morphological adaptations to the drug.

Journal: Brain, behavior, and immunity

Authors' code: avm27.github.io/methamphetamine_microglialrnasequencing_analysis (no license)

Status: code verified

[27225] doi:10.1016/j.isci.2024.110165 [paper]

Ventral zona incerta parvalbumin neurons modulate sensory-induced and stress-induced self-grooming via input-dependent mechanisms in mice.

Journal: iScience

Status: code on request

[27226] doi:10.1016/j.omtn.2024.102234 [paper]

<i>CircHTT(2,3,4,5,6)</i> <i>-</i> co-evolving with the <i>HTT</i> CAG-repeat tract - modulates Huntington's disease phenotypes.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[27227] doi:10.1021/acs.analchem.3c05557 [paper, data]

Integrative Single-Plaque Analysis Reveals Signature Aβ and Lipid Profiles in the Alzheimer's Brain.

Journal: Analytical chemistry

Status: data only, 1 dataset cited

[27228] doi:10.1021/acs.jcim.4c00467 [paper, repository]

RhoMax: Computational Prediction of Rhodopsin Absorption Maxima Using Geometric Deep Learning.

Journal: Journal of chemical information and modeling

Authors' code: dina-lab3D/OpsiGen (no license)

Status: code verified, 44 files readable, 2 matches

[27229] doi:10.1038/s41398-024-02936-6 [paper]

Factor analysis of lifetime psychopathology and its brain morphometric and genetic correlates in a transdiagnostic sample.

Journal: Translational psychiatry

Status: code on request

[27230] doi:10.1038/s41398-024-02962-4 [paper, data]

Analysis of human neuronal cells carrying ASTN2 deletion associated with psychiatric disorders.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[27231] doi:10.1038/s41467-024-48490-z [paper, repository]

Neuromodulatory subcortical nucleus integrity is associated with white matter microstructure, tauopathy and APOE status.

Journal: Nature communications

Authors' code: Zenodo 10680563 (CC-BY-4.0)

Status: code verified

[27232] doi:10.1038/s41592-024-02270-1 [paper, repository]

Detailed mapping of the complex fiber structure and white matter pathways of the chimpanzee brain.

Journal: Nature methods

Authors' code: cornelius-eichner/EBC_dMRI_Preprocessing (MPL-2.0)

Status: code verified, 50 files readable, 5 matches

[27233] doi:10.1038/s41598-024-62155-3 [paper, repository]

Differential responses of primary neuron-secreted MCP-1 and IL-9 to type 2 diabetes and Alzheimer's disease-associated metabolites.

Journal: Scientific reports

Authors' code: Brubaker-Lab/AD-T2D-Cytokine-Manuscript (no license)

Status: code verified, 2 files readable, 8 matches

[27234] doi:10.1038/s41598-024-62374-8 [paper, data]

A computational fluid dynamics study to assess the impact of coughing on cerebrospinal fluid dynamics in Chiari type 1 malformation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27235] doi:10.1038/s42003-024-06342-y [paper, repository]

Correlations reveal the hierarchical organization of biological networks with latent variables.

Journal: Communications biology

Authors' code: Zenodo 8190172 (CC-BY-4.0), stefanhausler/modularization (BSD-3-Clause)

Status: code verified, 27 files readable, 7 matches

[27236] doi:10.1038/s44319-024-00168-9 [paper, repository]

miR-7 controls glutamatergic transmission and neuronal connectivity in a Cdr1as-dependent manner.

Journal: EMBO reports

Authors' code: arjunrajlaboratory/rajlabimagetools (no license)

Status: code verified, 847 files readable

[27237] doi:10.1073/pnas.2311570121 [paper, repository]

Developmental hearing loss-induced perceptual deficits are rescued by genetic restoration of cortical inhibition.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: nyu.box.com/s/q32vabsrlqcdb939x2o9qf6cid90bu6k (no license)

Status: dead link

[27238] doi:10.1073/pnas.2317707121 [paper, repository]

Natural scenes reveal diverse representations of 2D and 3D body pose in the human brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: naturalscenesdataset.org (no license), OSF n3adh (no license)

Status: code verified, 9 files readable, 1 match

[27239] doi:10.1109/access.2024.3408840 [paper, repository]

Adversarial Learning for MRI Reconstruction and Classification of Cognitively Impaired Individuals.

Journal: IEEE access : practical innovations, open solutions

Authors' code: vkola-lab/access2024 (MIT)

Status: code verified, 27 files readable, 1 match

[27240] doi:10.1159/000539584 [paper, data]

Peripuberty Is a Sensitive Period for Prefrontal Parvalbumin Interneuron Activity to Impact Adult Cognitive Flexibility.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[27241] doi:10.1162/imag_a_00185 [paper, repository]

External task switches activate default mode regions without enhanced processing of the surrounding scene.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ashleyxzhou/DMN-taskswitch-fMRI-code (no license)

Status: code verified, 17 files readable, 6 matches

[27242] doi:10.1162/nol_a_00122 [paper, repository]

Cortical Structure in Pre-Readers at Cognitive Risk for Dyslexia: Baseline Differences and Response to Intervention.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: meconomou/Economou_etal_GMplasticity (CC-BY-4.0), OSF cyked (no license)

Status: code verified, 6 files readable, 4 matches

[27243] doi:10.1162/nol_a_00127 [paper, repository]

Differences in Cortical Surface Area in Developmental Language Disorder.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF wmkrq (no license)

Status: code verified, 10 files readable, 2 matches

[27244] doi:10.1162/nol_a_00128 [paper, repository]

Tracking Components of Bilingual Language Control in Speech Production: An fMRI Study Using Functional Localizers.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 59za8 (no license)

Status: code verified, 4 files readable, 3 matches

[27245] doi:10.1162/nol_a_00129 [paper, repository]

Low-Level Auditory Processing Correlates With Language Abilities: An ERP Study Investigating Sequence Learning and Auditory Processing in School-Aged Children.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 7ng5h (no license)

Status: code verified, 2 files readable, 2 matches

[27246] doi:10.1162/nol_a_00132 [paper, data]

The Neural Correlates of Embodied L2 Learning: Does Embodied L2 Verb Learning Affect Representation and Retention?

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[27247] doi:10.1162/nol_a_00135 [paper, repository]

The Language Network Reliably "Tracks" Naturalistic Meaningful Nonverbal Stimuli.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF t8sz5 (no license)

Status: code verified, 6 files readable, 4 matches

[27248] doi:10.1162/nol_a_00136 [paper, repository]

Approaches to Measuring Language Lateralisation: An Exploratory Study Comparing Two fMRI Methods and Functional Transcranial Doppler Ultrasound.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF f6uyt (no license)

Status: code verified, 1 file readable, 6 matches

[27249] doi:10.1162/nol_a_00138 [paper, repository]

Reactive Inhibitory Control Precedes Overt Stuttering Events.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 97tsm (no license)

Status: code verified, 2 files readable, 3 matches

[27250] doi:10.1162/nol_a_00139 [paper, repository]

Pars Opercularis Underlies Efferent Predictions and Successful Auditory Feedback Processing in Speech: Evidence From Left-Hemisphere Stroke.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF hjwsx (no license), Zenodo 13839 (other-open), carrien/wave_viewer (GPL-2.0)

Status: code verified, 40 files readable, 1 match

[27251] doi:10.1162/nol_a_00141 [paper, repository]

Exploring the Interplay Between Language Comprehension and Cortical Tracking: The Bilingual Test Case.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF e6z3s (no license)

Status: empty repository

[27252] doi:10.1162/nol_a_00144 [paper, repository]

A Comparison of White Matter Brain Differences in Monolingual and Highly Proficient Multilingual Speakers.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: mrtrix3/mrtrix3 (MPL-2.0), mic-dkfz/tractseg (Apache-2.0)

Status: code verified, 974 files readable, 6 matches

[27253] doi:10.1162/nol_a_00145 [paper, data]

Selective Neural Entrainment Reveals Hierarchical Tuning to Linguistic Regularities in Reading.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 2 datasets cited

[27254] doi:10.1186/s13229-024-00604-6 [paper, repository]

Discrimination sensitivity of visual shapes sharpens in autistic adults but only after explicit category learning.

Journal: Molecular autism

Authors' code: OSF n4krv (no license)

Status: code verified, 6 files readable, 1 match

[27255] doi:10.1371/journal.pbio.3002664 [paper, repository]

The COMBO window: A chronic cranial implant for multiscale circuit interrogation in mice.

Journal: PLoS biology

Authors' code: Zenodo 11092491 (CC-BY-4.0), supp:PMC11185485/pbio.3002664.s044.m (no license), supp:PMC11185485/pbio.3002664.s045.m (no license), supp:PMC11185485/pbio.3002664.s046.m (no license), supp:PMC11185485/pbio.3002664.s047.m (no license), supp:PMC11185485/pbio.3002664.s048.m (no license), supp:PMC11185485/pbio.3002664.s049.m (no license), supp:PMC11185485/pbio.3002664.s050.m (no license), supp:PMC11185485/pbio.3002664.s051.m (no license), supp:PMC11185485/pbio.3002664.s052.m (no license), supp:PMC11185485/pbio.3002664.s053.m (no license)

Status: code verified, 22 files readable, 2 matches

[27256] doi:10.1371/journal.pcbi.1012178 [paper, repository]

Synergistic information supports modality integration and flexible learning in neural networks solving multiple tasks.

Journal: PLoS computational biology

Authors' code: aproca/PID_multitask (MIT)

Status: code verified, 59 files readable, 5 matches

[27257] doi:10.3389/fphar.2024.1405446 [paper, data]

The impact of abstinence from chronic alcohol consumption on the mouse striatal proteome: sex and subregion-specific differences.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[27258] doi:10.4103/nrr.nrr-d-23-01922 [paper, repository]

Hypoxia-preconditioned bone marrow-derived mesenchymal stem cells protect neurons from cardiac arrest-induced pyroptosis.

Journal: Neural regeneration research

Authors' code: najoshi/sickle (MIT)

Status: code verified, 10 files readable

[27259] doi:10.4103/nrr.nrr-d-23-01933 [paper, data]

Inhibiting ceramide synthase 5 expression in microglia decreases neuroinflammation after spinal cord injury.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[27260] doi:10.7717/peerj.17517 [paper, data]

Effect of oral tryptamines on the gut microbiome of rats-a preliminary study.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 2 June 2024 (1 paper)

[27261] doi:10.1016/j.nicl.2024.103628 [paper, repository]

Systematically altered connectome gradient in benign childhood epilepsy with centrotemporal spikes: Potential effect on cognitive function.

Journal: NeuroImage. Clinical

Authors' code: mingruixia/MDD_ConnectomeGradient (no license), ZaixuCui/Pattern_Regression (no license)

Status: code verified, 76 files readable, 1 match

Saturday, 1 June 2024 (67 papers)

[27262] doi:10.1002/brb3.3511 [paper, repository]

Modulation of habenular and nucleus accumbens functional connectivity by ketamine in major depression.

Journal: Brain and behavior

Authors' code: btaraku/SeedBased_dynamic_FC (no license)

Status: code verified, 3 files readable, 3 matches

[27263] doi:10.1002/brb3.3554 [paper, repository]

Assistive tools for classifying neurological disorders using fMRI and deep learning: A guide and example.

Journal: Brain and behavior

Authors' code: bips-hb/neuralnet (no license)

Status: code verified, 15 files readable, 2 matches

[27264] doi:10.1002/brb3.3573 [paper]

Assessing midbrain neuromelanin and its relationship to reward learning in anorexia nervosa: Stage 1 of a registered report.

Journal: Brain and behavior

Status: code on request

[27265] doi:10.1002/hbm.26606 [paper, repository]

Estimation of static and dynamic functional connectivity in resting-state fMRI using zero-frequency resonator.

Journal: Human brain mapping

Authors' code: sentudas32/ZFR_rest (no license)

Status: empty repository

[27266] doi:10.1002/hbm.26676 [paper, data]

Exploring neural tracking of acoustic and linguistic speech representations in individuals with post-stroke aphasia.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[27267] doi:10.1002/hbm.26682 [paper, data]

Principal component analysis as an efficient method for capturing multivariate brain signatures of complex disorders-ENIGMA study in people with bipolar disorders and obesity.

Journal: Human brain mapping

Status: data only, 3 datasets cited

[27268] doi:10.1002/hbm.26688 [paper, repository]

Quantitative susceptibility mapping in the brain reflects spatial expression of genes involved in iron homeostasis and myelination.

Journal: Human brain mapping

Authors' code: LiuCLab/qsm-gene-analysis (no license), BMHLab/AHBAprocessing (no license)

Status: code verified, 397 files readable, 6 matches

[27269] doi:10.1002/hbm.26707 [paper, repository]

Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer's disease.

Journal: Human brain mapping

Authors' code: vkola-lab/hbm2024 (MIT)

Status: code verified, 55 files readable, 9 matches

[27270] doi:10.1002/hbm.26717 [paper, repository]

Heritability of cerebellar subregion volumes in adolescent and young adult twins.

Journal: Human brain mapping

Authors' code: PsychiatricGenetics/Cerebellar_heritability (no license)

Status: code verified, 11 files readable, 6 matches

[27271] doi:10.1002/hbm.26719 [paper, repository]

Neural representations of statistical and rule-based predictions in Gilles de la Tourette syndrome.

Journal: Human brain mapping

Authors' code: OSF fz2ta (no license)

Status: code verified, 1 file readable, 2 matches

[27272] doi:10.1002/hbm.26721 [paper, repository]

Fast refacing of MR images with a generative neural network lowers re-identification risk and preserves volumetric consistency.

Journal: Human brain mapping

Authors' code: acit-lausanne/refacing-cgan (CC-BY-NC-SA-4.0)

Status: code verified, 55 files readable, 2 matches

[27273] doi:10.1002/hbm.26722 [paper, repository]

Longitudinal microstructural alterations surrounding subcortical ischemic stroke lesions detected by free-water imaging.

Journal: Human brain mapping

Authors' code: csi-hamburg/CSIframe (MIT), felenae/2023_freewater_subcortical_stroke (no license)

Status: code verified, 88 files readable, 5 matches

[27274] doi:10.1002/hbm.26725 [paper, repository]

Assessment of precision and accuracy of brain white matter microstructure using combined diffusion MRI and relaxometry.

Journal: Human brain mapping

Authors' code: NYU-DiffusionMRI/SMI (no license)

Status: code verified, 4 files readable, 3 matches

[27275] doi:10.1002/hbm.26747 [paper, data]

The effects of spatial leakage correction on the reliability of EEG-based functional connectivity networks.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[27276] doi:10.1002/hbm.26750 [paper, data]

Posterior default mode network is associated with the social performance in male children with autism spectrum disorder: A dynamic causal modeling analysis based on triple-network model.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[27277] doi:10.1002/hbm.26751 [paper, repository]

Impact of data processing varieties on DCM estimates of effective connectivity from task-fMRI.

Journal: Human brain mapping

Authors' code: CogPsycho2023/DCMs1 (no license)

Status: code verified, 48 files readable, 8 matches

[27278] doi:10.1002/hbm.26757 [paper, repository]

Functional dissociation of the language network and other cognition in early childhood.

Journal: Human brain mapping

Authors' code: SayginLab (no license)

Status: code verified

[27279] doi:10.1002/hbm.26761 [paper, repository]

Changes of brain parenchyma free water fraction reflect tissue damage and impaired processing speed in multiple sclerosis.

Journal: Human brain mapping

Authors' code: mvgolub/FW-DTI-Beltrami (BSD-3-Clause), alestella/mcDESPOT_FWF_MS (BSD-2-Clause)

Status: code verified, 53 files readable, 9 matches

[27280] doi:10.1002/hbm.26767 [paper, repository]

EEG decoding with spatiotemporal convolutional neural network for visualization and closed-loop control of sensorimotor activities: A simultaneous EEG-fMRI study.

Journal: Human brain mapping

Authors' code: Junichi-Ushiba-Laboratory/eeg-decoding-with-spatiotemporal-cnn (no license)

Status: code verified, 6 files readable

[27281] doi:10.1002/mgg3.2485 [paper]

Clinical characteristics of a case of multiple mitochondrial dysfunction syndrome 3.

Journal: Molecular genetics & genomic medicine

Status: data only

[27282] doi:10.1007/s00424-024-02971-8 [paper, repository]

Noise or signal? Spontaneous activity of dorsal horn neurons: patterns and function in health and disease.

Journal: Pflugers Archiv : European journal of physiology

Authors' code: Lucas-Romero-J/App_Spike_Train_Analysis_V3 (MIT)

Status: code verified, 8 files readable, 2 matches

[27283] doi:10.1007/s12264-024-01218-x [paper, repository]

Convergent Neuroimaging and Molecular Signatures in Mild Cognitive Impairment and Alzheimer's Disease: A Data-Driven Meta-Analysis with N = 3,118.

Journal: Neuroscience bulletin

Authors' code: YongLiuLab (no license)

Status: code verified

[27284] doi:10.1016/j.heliyon.2024.e32271 [paper, data]

Selenoprotein GPX3 is a novel prognostic indicator for stomach adenocarcinoma and brain low-grade gliomas: Evidence from an integrative pan-cancer analysis.

Journal: Heliyon

Status: data only, 1 dataset cited

[27285] doi:10.1016/j.mex.2024.102789 [paper, repository]

Implementing ABCD study&lt;sup&gt;Ⓡ&lt;/sup&gt; MRI sequences for multi-site cohort studies: Practical guide to necessary steps, preprocessing methods, and challenges.

Journal: MethodsX

Authors' code: trislett/ants_tbss (GPL-3.0)

Status: code verified, 6 files readable

[27286] doi:10.1016/j.xcrm.2024.101609 [paper, data]

The impact of ATP-binding cassette transporters in the diseased brain: Context matters.

Journal: Cell reports. Medicine

Status: data only, 1 dataset cited

[27287] doi:10.1038/s41467-024-48747-7 [paper, repository]

A 3D ray traced biological neural network learning model.

Journal: Nature communications

Authors' code: sensor-net.net/a-3d-ray-traced-biological-neural-network-learning-model (no license)

Status: code found, still to be checked

[27288] doi:10.1038/s41598-024-63085-w [paper, repository]

Robust memory of face moral values is encoded in the human caudate tail: a simultaneous EEG-fMRI study.

Journal: Scientific reports

Authors' code: AliAtaei1/face-value (no license)

Status: empty repository, 1 file readable

[27289] doi:10.1038/s41598-024-63312-4 [paper, repository]

Measuring global cerebrovascular pulsatility transmission using 4D flow MRI.

Journal: Scientific reports

Authors' code: ABI-Animus-Laboratory/QVTplus (BSD-2-Clause)

Status: code verified, 71 files readable, 1 match

[27290] doi:10.1038/s41598-024-63592-w [paper, data]

Mitochondrial RNA modification-based signature to predict prognosis of lower grade glioma: a multi-omics exploration and verification study.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[27291] doi:10.1038/s41746-024-01139-z [paper, repository]

Towards automatic home-based sleep apnea estimation using deep learning.

Journal: NPJ digital medicine

Authors' code: LCSB-SCG/DRIVEN (other)

Status: code verified, 25 files readable, 2 matches

[27292] doi:10.1038/s44220-024-00259-5 [paper, repository]

Early detection of dementia with default-mode network effective connectivity.

Journal: Nature. Mental health

Authors' code: Wolfson-PNU-QMUL/UKB_DCM_dementia (no license)

Status: code verified, 21 files readable, 24 matches

[27293] doi:10.1063/5.0191946 [paper, repository]

Open-source device for high sensitivity magnetic particle spectroscopy, relaxometry, and hysteresis loop tracing.

Journal: The Review of scientific instruments

Authors' code: EliMattingly22/Simple_Impedance_Analyzer (MIT)

Status: code verified, 5 files readable

[27294] doi:10.1093/bioinformatics/btae264 [paper, repository]

TA-RNN: an attention-based time-aware recurrent neural network architecture for electronic health records.

Journal: Bioinformatics (Oxford, England)

Authors' code: bozdaglab/TA-RNN (CC-BY-NC-4.0)

Status: code verified, 5 files readable, 6 matches

[27295] doi:10.1093/brain/awae007 [paper, repository]

Huntington's disease affects mitochondrial network dynamics predisposing to pathogenic mitochondrial DNA mutations.

Journal: Brain : a journal of neurology

Authors' code: mtstamp/stamp (MIT)

Status: code verified, 16 files readable, 6 matches

[27296] doi:10.1093/brain/awae019 [paper, data]

Disease-linked mutations in Munc18-1 deplete synaptic Doc2.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[27297] doi:10.1093/brain/awae059 [paper, data]

Localization of stuttering based on causal brain lesions.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[27298] doi:10.1093/brain/awae102 [paper, repository]

Neurocomputational model of compulsivity: deviating from an uncertain goal-directed system.

Journal: Brain : a journal of neurology

Authors' code: takwan/arbitration-OCD (MIT)

Status: code verified, 13 files readable, 2 matches

[27299] doi:10.1093/cercor/bhae221 [paper, data]

The large-scale organization of shape processing in the ventral and dorsal pathways is dissociable from attention.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[27300] doi:10.1093/cercor/bhae233 [paper, repository]

Recalled through this day but forgotten next week?-retrieval activity predicts durability of partly consolidated memories.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: markushs/sdcflows (Apache-2.0)

Status: code verified, 37 files readable, 3 matches

[27301] doi:10.1093/cercor/bhae239 [paper, data]

Changes in primary visual and auditory cortex of blind and sighted adults following 10 weeks of click-based echolocation training.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[27302] doi:10.1093/cercor/bhae240 [paper, repository]

Division and spreading of attention across color.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 2kjsx (no license)

Status: code verified, 5 files readable

[27303] doi:10.1093/cercor/bhae246 [paper, repository]

The multiscale topological organization of the functional brain network in adolescent PTSD.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 8164459 (CC-BY-4.0)

Status: code verified, 32 files readable, 1 match

[27304] doi:10.1093/cercor/bhae256 [paper, repository]

Verbal semantic expertise is associated with reduced functional connectivity between left and right anterior temporal lobes.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF zbxt4 (no license)

Status: code verified, 2 files readable

[27305] doi:10.1093/cercor/bhae261 [paper, repository]

Microstructural associations between locus coeruleus, cortical, and subcortical regions are modulated by astrocyte reactivity: a 7T MRI adult lifespan study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: robbert-harms/MDT (LGPL-3.0)

Status: code verified, 189 files readable, 3 matches

[27306] doi:10.1093/cercor/bhae273 [paper, repository]

Simultaneous cortical, subcortical, and brainstem mapping of sensory activation.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: BrightLab-ANVIL/PreProc_BRAIN (no license), BrightLab-ANVIL/Reddy_SensoryWholeBrain (MIT)

Status: code verified, 18 files readable, 7 matches

[27307] doi:10.1093/ijnp/pyae023 [paper, repository]

Effects of Catecholaminergic and Transcranial Direct Current Stimulation on Response Inhibition.

Journal: The international journal of neuropsychopharmacology

Authors' code: OSF kwa54 (no license)

Status: code verified, 14 files readable, 4 matches

[27308] doi:10.1093/nar/gkae271 [paper, repository]

Extensive long-range polycomb interactions and weak compartmentalization are hallmarks of human neuronal 3D genome.

Journal: Nucleic acids research

Authors' code: Zenodo 10888357 (CC-BY-4.0), i-pletenev/NeuN_plus_minus_paper (MIT)

Status: code verified, 17 files readable, 19 matches

[27309] doi:10.1093/nar/gkae293 [paper, repository]

SpatialSPM: statistical parametric mapping for the comparison of gene expression pattern images in multiple spatial transcriptomic datasets.

Journal: Nucleic acids research

Authors' code: figshare 25538311 (MIT), portrai-io/spatialspm (MIT)

Status: code verified, 15 files readable, 3 matches

[27310] doi:10.1093/nar/gkae310 [paper, repository]

Precise editing of pathogenic nucleotide repeat expansions in iPSCs using paired prime editor.

Journal: Nucleic acids research

Authors' code: snugel/digenome-toolkit (no license)

Status: code verified, 11 files readable

[27311] doi:10.1093/neuonc/noae017 [paper, repository]

Glioblastoma and radiotherapy: A multicenter AI study for Survival Predictions from MRI (GRASP study).

Journal: Neuro-oncology

Authors' code: lyshc/glioblastoma-survival-classifier (MIT)

Status: code verified, 9 files readable, 4 matches

[27312] doi:10.1093/scan/nsae032 [paper, repository]

Brain-wide representation of social knowledge.

Journal: Social cognitive and affective neuroscience

Authors' code: nmningmei (no license)

Status: code verified

[27313] doi:10.1093/scan/nsae033 [paper, repository]

Corticostriatal responses to social reward are linked to trait reward sensitivity and subclinical substance use in young adults.

Journal: Social cognitive and affective neuroscience

Authors' code: DVS-Lab/istart-socdoors (MIT)

Status: code verified, 69 files readable, 2 matches

[27314] doi:10.1093/sleep/zsae048 [paper, repository]

Data-driven, generalizable prediction of adolescent sleep disturbances in the multisite Adolescent Brain Cognitive Development Study.

Journal: Sleep

Authors' code: SripadaLab/ABCD_sleep_disturbances_CCA (no license)

Status: code verified, 7 files readable, 4 matches

[27315] doi:10.1111/adb.13398 [paper, data]

Global, interhemispheric and intrahemispheric functional connection patterns in male adults with alcohol use disorder.

Journal: Addiction biology

Status: data only, 1 dataset cited

[27316] doi:10.1111/cns.14804 [paper, repository]

Disrupted individual-level morphological brain network in spinal muscular atrophy types 2 and 3.

Journal: CNS neuroscience & therapeutics

Authors' code: neuro-jena.github.io/software (no license)

Status: dead link

[27317] doi:10.1111/cns.14822 [paper, data]

Evidences of neurological injury caused by COVID-19 from glioma tissues and glioma organoids.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[27318] doi:10.1111/jcmm.18366 [paper]

Overexpression of olfactory receptor 78 ameliorates brain injury in cerebral ischaemia-reperfusion rats by activating Prkaca-mediated cAMP/PKA-MAPK pathway.

Journal: Journal of cellular and molecular medicine

Status: data only

[27319] doi:10.1167/jov.24.6.1 [paper, repository]

Convolutional neural network models applied to neuronal responses in macaque V1 reveal limited nonlinear processing.

Journal: Journal of vision

Authors' code: Huiyuan-Miao/V1-Nonlinear (no license)

Status: code verified, 17 files readable, 6 matches

[27320] doi:10.1167/jov.24.6.12 [paper, repository]

How does V1 population activity inform perceptual certainty?

Journal: Journal of vision

Authors' code: HukLab/PLDAPS (no license)

Status: code verified, 208 files readable

[27321] doi:10.1186/s12974-024-03144-1 [paper, data]

Differences in the characteristics and functions of brain and spinal cord regulatory T cells.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[27322] doi:10.1186/s13195-024-01488-7 [paper, repository]

Bayesian genome-wide TWAS with reference transcriptomic data of brain and blood tissues identified 141 risk genes for Alzheimer's disease dementia.

Journal: Alzheimer's research & therapy

Authors' code: yanglab-emory/BGW-TWAS (GPL-3.0)

Status: code verified, 513 files readable, 3 matches

[27323] doi:10.1192/bjp.2024.25 [paper]

Associations between multimorbidity and neuropathology in dementia: consideration of functional cognitive disorders, psychiatric illness and dementia mimics.

Journal: The British journal of psychiatry : the journal of mental science

Status: code on request

[27324] doi:10.1242/dmm.050574 [paper, data]

ATP1A3 regulates protein synthesis for mitochondrial stability under heat stress.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[27325] doi:10.3390/brainsci14060565 [paper, data]

Multi-Threshold Recurrence Rate Plot: A Novel Methodology for EEG Analysis in Alzheimer's Disease and Frontotemporal Dementia.

Journal: Brain sciences

Status: data only, 1 dataset cited

[27326] doi: [paper, repository]

nnSegNeXt: A 3D Convolutional Network for Brain Tissue Segmentation Based on Quality Evaluation

Journal: Bioengineering (Basel, Switzerland)

Authors' code: Liuyuchen0224/nnSegNeXt (MIT)

Status: code verified, 190 files readable, 8 matches

[27327] doi: [paper, repository]

Discontinuation of Palliative Brain Radiotherapy in Patients with Brain Metastases: A Case–Control Study

Journal: Journal of clinical medicine

Authors' code: windisch-paul/rt-treatment-discontinuation (no license)

Status: code verified, 2 files readable

[27328] doi: [paper, data]

Motor Imagery EEG Signal Classification Using Distinctive Feature Fusion with Adaptive Structural LASSO

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

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