Every paper, by date: page 123

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 123 of 200: 31 May 2024 to 23 May 2024.

Friday, 31 May 2024 (30 papers)

[27329] doi:10.1007/s12264-024-01232-z [paper]

Link Brain-Wide Projectome to Neuronal Dynamics in the Mouse Brain.

Journal: Neuroscience bulletin

Status: code on request

[27330] doi:10.1016/j.isci.2024.110159 [paper]

Toward AI-driven neuroepigenetic imaging biomarker for alcohol use disorder: A proof-of-concept study.

Journal: iScience

Status: code on request

[27331] doi:10.1016/j.isci.2024.110164 [paper, repository]

A high-performance general computer cursor control scheme based on a hybrid BCI combining motor imagery and eye-tracking.

Journal: iScience

Authors' code: eytydgshib/MI-BCI-real (BSD-3-Clause)

Status: code verified, 14 files readable

[27332] doi:10.1016/j.neuroimage.2024.120662 [paper]

Mouse brain elastography changes with sleep/wake cycles, aging, and Alzheimer's disease.

Journal: NeuroImage

Status: code on request

[27333] doi:10.1016/j.xgen.2024.100581 [paper, repository]

SIMS: A deep-learning label transfer tool for single-cell RNA sequencing analysis.

Journal: Cell genomics

Authors' code: braingeneers/SIMS (MIT), Zenodo 11095105 (CC-BY-4.0), scverse/scvi-tools (BSD-3-Clause), jn-goe/gruffi (GPL-3.0), JesusGF1/sims_app (no license)

Status: code verified, 402 files readable, 13 matches

[27334] doi:10.1038/s41467-024-48373-3 [paper, repository]

Intrinsic and synaptic determinants of receptive field plasticity in Purkinje cells of the mouse cerebellum.

Journal: Nature communications

Authors' code: tingfenglin-ac/CerebellarPurkinjeRFplasticity (no license), Zenodo 10901777 (CC-BY-4.0)

Status: code verified, 42 files readable, 5 matches

[27335] doi:10.1038/s41467-024-48731-1 [paper, repository]

Deep brain stimulation of symptom-specific networks in Parkinson's disease.

Journal: Nature communications

Authors' code: netstim/DBS-Tractography-Atlas (no license), leaddbs/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 9 matches

[27336] doi:10.1038/s41467-024-48885-y [paper, repository]

AgRP neuron cis-regulatory analysis across hunger states reveals that IRF3 mediates leptin's acute effects.

Journal: Nature communications

Authors' code: Zenodo 10967242 (CC-BY-4.0)

Status: code verified

[27337] doi:10.1038/s41467-024-49016-3 [paper, data]

Aplp1 interacts with Lag3 to facilitate transmission of pathologic α-synuclein.

Journal: Nature communications

Status: data only, 1 dataset cited

[27338] doi:10.1038/s41467-024-49140-0 [paper, repository]

The neural basis of resting-state fMRI functional connectivity in fronto-limbic circuits revealed by chemogenetic manipulation.

Journal: Nature communications

Authors' code: RudebeckLab/rsFMRI-dreadds (no license)

Status: code verified, 23 files readable, 6 matches

[27339] doi:10.1038/s41598-024-63458-1 [paper, repository]

An ethologically relevant paradigm to assess defensive response to looming visual contrast stimuli.

Journal: Scientific reports

Authors' code: SalvadorCalanni/LTCV (no license)

Status: code verified, 6 files readable

[27340] doi:10.1117/1.jbo.29.6.067001 [paper]

Compact and cost-effective laser-powered speckle contrast optical spectroscopy fiber-free device for measuring cerebral blood flow.

Journal: Journal of biomedical optics

Status: code on request

[27341] doi:10.1126/sciadv.adk3229 [paper, repository]

Spinal inhibitory neurons degenerate before motor neurons and excitatory neurons in a mouse model of ALS.

Journal: Science advances

Authors' code: Zenodo 10600983 (CC-BY-4.0), Zenodo 10600965 (CC-BY-4.0), Zenodo 10600982 (CC-BY-4.0), Zenodo 10600964 (CC-BY-4.0), allodi-lab/hiplexup_pipeline (MIT), allodi-lab/iss_pipeline (MIT)

Status: code verified, 10 files readable, 7 matches

[27342] doi:10.1126/sciadv.adk7220 [paper, repository]

Neuroanatomical, transcriptomic, and molecular correlates of math ability and their prognostic value for predicting learning outcomes.

Journal: Science advances

Authors' code: Zenodo 10642197 (CC-BY-4.0), scsnl/Liu_Supekar_SA_2024 (no license)

Status: code verified, 120 files readable, 13 matches

[27343] doi:10.1177/0271678x241258576 [paper, repository]

High-resolution vasomotion analysis reveals novel arteriole physiological features and progressive modulation of cerebral vascular networks by stroke.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: JialabEleven/Vasomotion_analysis (no license)

Status: code verified, 16 files readable, 5 matches

[27344] doi:10.1186/s40478-024-01785-0 [paper, data]

Alpha-synuclein aggregates are phosphatase resistant.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[27345] doi:10.1371/journal.pcbi.1011145 [paper, repository]

How well do models of visual cortex generalize to out of distribution samples?

Journal: PLoS computational biology

Authors' code: dicarlolab/npc (MIT), BashivanLab/NeuralPredictionGeneralizationGap (MIT)

Status: code verified, 9 files readable, 4 matches

[27346] doi:10.1371/journal.pcbi.1012127 [paper, repository]

Estimating receptive fields of simple and complex cells in early visual cortex: A convolutional neural network model with parameterized rectification.

Journal: PLoS computational biology

Authors' code: JinaniSooriyaarachchi/CNNwithPReLU_RFestimateV1 (GPL-3.0), kendrickkay/knkutils (no license)

Status: code verified, 474 files readable, 4 matches

[27347] doi:10.1371/journal.pcbi.1012186 [paper, repository]

Astrocytes as a mechanism for contextually-guided network dynamics and function.

Journal: PLoS computational biology

Authors' code: lukegong20/Neuro-astrocyte-networks-and-Multi-armed-bandits (MIT)

Status: code verified, 6 files readable, 2 matches

[27348] doi:10.1371/journal.pone.0297244 [paper, repository]

A comprehensive protocol for quantitative magnetic resonance imaging of the brain at 3 Tesla.

Journal: PloS one

Authors' code: NoamBenEliezer/Multiparametric_qMRI_protocol (no license), lsoustelle/ihmt_proc (other)

Status: code verified, 7 files readable, 4 matches

[27349] doi:10.1371/journal.pone.0304419 [paper, repository]

MCE: Medical Cognition Embedded in 3D MRI feature extraction for advancing glioma staging.

Journal: PloS one

Authors' code: Turing17/MCE_model (no license)

Status: code verified, 48 files readable, 3 matches

[27350] doi:10.3389/fnins.2024.1354051 [paper, data]

Effects of different speed-accuracy instructions on perception in psychology experiments: evidence from event-related potential and oscillation.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[27351] doi:10.3389/fonc.2024.1307516 [paper]

On the effects of 30.5 GHz sinusoidal wave exposure on glioblastoma organoids.

Journal: Frontiers in oncology

Status: data only

[27352] doi:10.3390/biom14060647 [paper, data]

Neuroprotective Strategies and Cell-Based Biomarkers for Manganese-Induced Toxicity in Human Neuroblastoma (SH-SY5Y) Cells.

Journal: Biomolecules

Status: data only, 1 dataset cited

[27353] doi:10.3390/ijms25116059 [paper, repository]

A Continuous Attractor Model with Realistic Neural and Synaptic Properties Quantitatively Reproduces Grid Cell Physiology.

Journal: International journal of molecular sciences

Authors' code: Hippocampome-Org/spatial_nav (MIT), OSF jd6rv (no license)

Status: code verified, 240 files readable, 9 matches

[27354] doi:10.3390/ijms25116079 [paper, repository]

Role of iRhom2 in Olfaction: Implications for Odorant Receptor Regulation and Activity-Dependent Adaptation.

Journal: International journal of molecular sciences

Authors' code: Justice-Lu/iRhom2_Analysis (no license)

Status: code verified, 8 files readable, 5 matches

[27355] doi:10.3390/mi15060732 [paper, repository]

The Profile of Network Spontaneous Activity and Functional Organization Interplay in Hierarchically Connected Modular Neural Networks In Vitro.

Journal: Micromachines

Authors' code: alex-pimashkin/MeaData (no license)

Status: code verified, 1 file readable

[27356] doi:10.7554/elife.89516 [paper, data]

Genetically defined nucleus incertus neurons differ in connectivity and function.

Journal: eLife

Status: data only, 6 datasets cited

[27357] doi:10.7554/elife.94191 [paper, repository]

Visual working memories are abstractions of percepts.

Journal: eLife

Authors' code: princetonuniversity/princeton-mvpa-toolbox (GPL-3.0), clayspacelab/iEye (no license)

Status: code verified, 773 files readable, 6 matches

[27358] doi:10.7717/peerj.17482 [paper, repository]

A genomic hotspot of diversifying selection and structural change in the hoary bat (<i>Lasiurus cinereus</i>).

Journal: PeerJ

Authors' code: supp:PMC11146322/peerj-12-17482-s009.zip (no license)

Status: empty repository

Thursday, 30 May 2024 (19 papers)

[27359] doi:10.1016/j.brs.2024.05.014 [paper, repository]

TMS provokes target-dependent intracranial rhythms across human cortical and subcortical sites.

Journal: Brain stimulation

Authors' code: PrecisionNeuroLab/Analysis-SolomonEtAl2024 (no license)

Status: code verified, 21 files readable, 5 matches

[27360] doi:10.1016/j.ynstr.2024.100651 [paper, repository]

Adolescent environmental enrichment induces social resilience and alters neural gene expression in a selectively bred rodent model with anxious phenotype.

Journal: Neurobiology of stress

Authors' code: hagenaue/bHRbLR_Enrichment_Stress_BehaviorAndHormoneData (no license)

Status: code verified, 19 files readable, 4 matches

[27361] doi:10.1038/s41419-024-06768-6 [paper, data]

Biallelic variants in CSMD1 are implicated in a neurodevelopmental disorder with intellectual disability and variable cortical malformations.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[27362] doi:10.1038/s41467-024-48732-0 [paper, repository]

Chronic intracranial recordings in the globus pallidus reveal circadian rhythms in Parkinson's disease.

Journal: Nature communications

Authors' code: Fixel-Institute/Publication-Scripts (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[27363] doi:10.1038/s41593-024-01654-y [paper, repository]

Nf1 mutation disrupts activity-dependent oligodendroglial plasticity and motor learning in mice.

Journal: Nature neuroscience

Authors' code: Zenodo 10864194 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[27364] doi:10.1038/s41597-024-03413-x [paper, data]

Micro-CT data of complete metamorphosis process in Harmonia axyridis.

Journal: Scientific data

Status: data only, 1 dataset cited

[27365] doi:10.1073/pnas.2318641121 [paper, repository]

In vivo whole-cortex marker of excitation-inhibition ratio indexes cortical maturation and cognitive ability in youth.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 1 match

[27366] doi:10.1155/2024/4678554 [paper, data]

Multimodal Brain Tumor Classification Using Convolutional Tumnet Architecture.

Journal: Behavioural neurology

Status: data only, 1 dataset cited

[27367] doi:10.1162/imag_a_00180 [paper, repository]

VINNA for neonates: Orientation independence through latent augmentations.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: deep-mi/VINNA4neonates (Apache-2.0)

Status: code verified, 29 files readable, 11 matches

[27368] doi:10.1371/journal.pbio.3002622 [paper, data]

Negation mitigates rather than inverts the neural representations of adjectives.

Journal: PLoS biology

Status: data only, 1 dataset cited

[27369] doi:10.1371/journal.pcbi.1012161 [paper, repository]

Temporal dynamics of short-term neural adaptation across human visual cortex.

Journal: PLoS computational biology

Authors' code: ABra1993/tAdaptation_ECoG (no license), WinawerLab/ECoG_utils (no license)

Status: code verified, 424 files readable, 16 matches

[27370] doi:10.1371/journal.pone.0300720 [paper, repository]

Brain age monotonicity and functional connectivity differences of healthy subjects.

Journal: PloS one

Authors' code: sorooshyari/PLOS_ONE_2004 (no license)

Status: code verified, 4 files readable, 6 matches

[27371] doi:10.3389/fnhum.2024.1388267 [paper, data]

Consistent spectro-spatial features of human ECoG successfully decode naturalistic behavioral states.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[27372] doi:10.3389/fnins.2024.1396518 [paper, repository]

PhyberSIM: a tool for the generation of ground truth to evaluate brain fiber clustering algorithms.

Journal: Frontiers in neuroscience

Authors' code: elidapoo/Brain_bundle_simulator (MIT)

Status: code verified, 7 files readable, 1 match

[27373] doi:10.3390/biomedicines12061215 [paper, data]

Mild Disease Course of Experimental Autoimmune Encephalomyelitis without Pertussis Toxin: Brain Transcriptome Analysis Reveals Similar Signaling to Active Lesions in Multiple Sclerosis.

Journal: Biomedicines

Status: data only, 1 dataset cited

[27374] doi:10.3390/brainsci14060555 [paper, data]

The Effects of Post-Exercise Cold Water Immersion on Neuromuscular Control of Knee.

Journal: Brain sciences

Status: data only, 1 dataset cited

[27375] doi:10.3390/ijms25115985 [paper, data]

Imbalance in <i>Unc80</i> RNA Editing Disrupts Dynamic Neuronal Activity and Olfactory Perception.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[27376] doi:10.3390/s24113521 [paper, data]

High-Density Electroencephalogram Facilitates the Detection of Small Stimuli in Code-Modulated Visual Evoked Potential Brain-Computer Interfaces.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[27377] doi:10.7554/elife.91533 [paper, repository]

Theoretical principles explain the structure of the insect head direction circuit.

Journal: eLife

Authors' code: Dominic-DallOsto/insect-navigation-sinusoidal-optimality (BSD-3-Clause)

Status: code verified, 19 files readable, 9 matches

Wednesday, 29 May 2024 (34 papers)

[27378] doi:10.1002/advs.202304551 [paper, repository]

AAV-mediated Gene Cocktails Enhance Supporting Cell Reprogramming and Hair Cell Regeneration.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: cole-trapnell-lab/monocle-release (no license)

Status: code verified, 67 files readable, 4 matches

[27379] doi:10.1002/alz.13913 [paper, data]

"Brain-IT": Exergame training with biofeedback breathing in neurocognitive disorders.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[27380] doi:10.1016/j.devcel.2024.05.005 [paper, repository]

Axonal endoplasmic reticulum tubules control local translation via P180/RRBP1-mediated ribosome interactions.

Journal: Developmental cell

Authors' code: ekatrukha/DoM_Utrecht (GPL-3.0)

Status: code verified, 44 files readable

[27381] doi:10.1016/j.isci.2024.110145 [paper]

Layer specific regulation of critical period timing and maturation of mouse visual cortex by endocannabinoids.

Journal: iScience

Status: code on request

[27382] doi:10.1016/j.mex.2024.102784 [paper, repository]

High resolution depth profile scanning of plankton organisms-VERTILICE.

Journal: MethodsX

Authors' code: Zenodo 7418314 (CC-BY-4.0)

Status: code verified, 10 files readable, 3 matches

[27383] doi:10.1038/s41380-024-02604-7 [paper, repository]

Diffusion imaging genomics provides novel insight into early mechanisms of cerebral small vessel disease.

Journal: Molecular psychiatry

Authors' code: rgcgithub.github.io/regenie (no license), cog-genomics.org/plink (no license), gusevlab.org/projects/fusion (no license), WSpiller/RadialMR (GPL-3.0), mrcieu.github.io/twosamplemr (no license)

Status: code verified, 11 files readable, 2 matches

[27384] doi:10.1038/s41467-024-48740-0 [paper, data]

Breast cancer cell-secreted miR-199b-5p hijacks neurometabolic coupling to promote brain metastasis.

Journal: Nature communications

Status: data only, 2 datasets cited

[27385] doi:10.1038/s41467-024-48962-2 [paper, repository]

Temporal interference stimulation disrupts spike timing in the primate brain.

Journal: Nature communications

Authors' code: OSF 92m4b (no license)

Status: code verified, 5 files readable, 1 match

[27386] doi:10.1038/s41562-024-01901-z [paper, repository]

Non-invasive stimulation of the human striatum disrupts reinforcement learning of motor skills.

Journal: Nature human behaviour

Authors' code: Zenodo 10458885 (CC-BY-4.0)

Status: code verified

[27387] doi:10.1038/s41586-024-07473-2 [paper, repository]

The complete sequence and comparative analysis of ape sex chromosomes.

Journal: Nature

Authors' code: abcsFrederick/non-B_gfa (MIT), fedorrik/apeXY_hmm (no license), makovalab-psu/T2T_primate_XY (MIT), Zenodo 10680008 (CC-BY-4.0), Zenodo 10680094 (CC-BY-4.0)

Status: code verified, 56 files readable, 8 matches

[27388] doi:10.1038/s41597-024-03398-7 [paper, repository]

ChineseEEG: A Chinese Linguistic Corpora EEG Dataset for Semantic Alignment and Neural Decoding.

Journal: Scientific data

Authors' code: ncclabsustech/Chinese_reading_task_eeg_processing (no license)

Status: code verified, 14 files readable, 12 matches

[27389] doi:10.1038/s42003-024-06358-4 [paper, repository]

Uncovering kinesin dynamics in neurites with MINFLUX.

Journal: Communications biology

Authors' code: Zenodo 10718784 (CC-BY-4.0)

Status: code verified, 10 files readable, 3 matches

[27390] doi:10.1073/pnas.2316364121 [paper, data]

Preictal dysfunctions of inhibitory interneurons paradoxically lead to their rebound hyperactivity and to low-voltage-fast onset seizures in Dravet syndrome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[27391] doi:10.1073/pnas.2403796121 [paper, data]

NAD activates olfactory receptor 1386 to regulate type I interferon responses in &lt;i&gt;Plasmodium yoelii&lt;/i&gt; YM infection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27392] doi:10.1093/bioadv/vbae064 [paper, repository]

Uncover spatially informed variations for single-cell spatial transcriptomics with STew.

Journal: Bioinformatics advances

Authors' code: fanzhanglab/STew (MIT)

Status: code verified, 38 files readable, 13 matches

[27393] doi:10.1098/rsos.230601 [paper, repository]

Epileptic seizure detection using CHB-MIT dataset: The overlooked perspectives.

Journal: Royal Society open science

Authors' code: WWM-EMRAN/DIHC_FeatureManager (no license), pycaret/pycaret (MIT)

Status: code verified, 308 files readable, 3 matches

[27394] doi:10.1098/rsos.240238 [paper, repository]

Electroactive composite biofilms integrating Kombucha, Chlorella and synthetic proteinoid Proto-Brains.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7214477 (no license)

Status: code found, still to be checked

[27395] doi:10.1098/rspb.2023.2708 [paper, data]

Melanopsin-mediated amplification of cone signals in the human visual cortex.

Journal: Proceedings. Biological sciences

Status: data only, 1 dataset cited

[27396] doi:10.1098/rspb.2024.0138 [paper, repository]

Smarter foragers do not forage smarter: a test of the diet hypothesis for brain expansion.

Journal: Proceedings. Biological sciences

Authors' code: Zenodo 10059599 (CC-BY-4.0), sealavi/hirsch-et-al.-2023-test-of-the-diet-hypothesis-for-brain-expansion (no license), doi:10.6084/m9.figshare.c.7241638 (no license)

Status: code verified, 24 files readable, 4 matches

[27397] doi:10.1126/sciadv.adk7214 [paper, data]

Decision-related activity and movement selection in primate visual cortex.

Journal: Science advances

Status: data only, 1 dataset cited

[27398] doi:10.1126/sciadv.adn4203 [paper, repository]

Mesostriatal dopamine is sensitive to changes in specific cue-reward contingencies.

Journal: Science advances

Authors' code: namboodirilab/ANCCR (no license)

Status: code verified, 66 files readable, 2 matches

[27399] doi:10.1152/jn.00073.2024 [paper, data]

Differential cortical and subcortical visual processing with eyes shut.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[27400] doi:10.1186/s12915-024-01920-2 [paper, repository]

Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F₁ hybrids.

Journal: BMC biology

Authors' code: JesperBoman/DNA_methylation_flycatchers (no license)

Status: code verified, 70 files readable, 14 matches

[27401] doi:10.1186/s13024-024-00731-x [paper, data]

Unraveling the complex role of MAPT-containing H1 and H2 haplotypes in neurodegenerative diseases.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[27402] doi:10.1212/nxg.0000000000200143 [paper, repository]

Dissecting the Shared Genetic Architecture of Common Epilepsies With Cortical Brain Morphology.

Journal: Neurology. Genetics

Authors' code: precimed/mixer (GPL-3.0), comorment/ldsc (GPL-3.0), BioPsyk/cleansumstats (no license)

Status: code verified, 198 files readable

[27403] doi:10.1212/nxi.0000000000200259 [paper]

Single-Cell Transcriptomic Analyses of Brain Parenchyma in Patients With New-Onset Refractory Status Epilepticus (NORSE).

Journal: Neurology(R) neuroimmunology & neuroinflammation

Status: code on request

[27404] doi:10.1371/journal.pone.0303608 [paper, repository]

3D octopus kinematics of complex postures: Translation to long, thin, soft devices and their potential for clinical use.

Journal: PloS one

Authors' code: supp:PMC11135735/pone.0303608.s003.m (no license)

Status: code verified, 1 file readable

[27405] doi:10.1523/jneurosci.2048-23.2024 [paper]

Impaired Cortical Tracking of Speech in Children with Developmental Language Disorder.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[27406] doi:10.1523/jneurosci.2223-23.2024 [paper, repository]

The Brain's Topographical Organization Shapes Dynamic Interaction Patterns That Support Flexible Behavior Based on Rules and Long-Term Knowledge.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Xiuyi-Wang/Control_Project (no license)

Status: code verified, 11 files readable, 1 match

[27407] doi:10.3390/brainsci14060552 [paper, data]

Neonatal Physical Growth Predicts Electroencephalography Power in Rural South African Children.

Journal: Brain sciences

Status: data only, 1 dataset cited

[27408] doi:10.3390/ijms25115976 [paper, repository]

scZAG: Integrating ZINB-Based Autoencoder with Adaptive Data Augmentation Graph Contrastive Learning for scRNA-seq Clustering.

Journal: International journal of molecular sciences

Authors' code: RJiXiang/scZAG (no license)

Status: code verified, 11 files readable

[27409] doi:10.7554/elife.76803 [paper, repository]

Brain representations of motion and position in the double-drift illusion.

Journal: eLife

Authors' code: elimerriam/doubleDrift (no license), OSF 3zx8p (no license), Zenodo 1299496 (other-open), justingardner/mgl (GPL-2.0)

Status: code verified, 736 files readable, 3 matches

[27410] doi:10.7554/elife.93357 [paper, repository]

Reactivation strength during cued recall is modulated by graph distance within cognitive maps.

Journal: eLife

Authors' code: CIMH-Clinical-Psychology/DeSMRRest-clustered-reactivation (MIT)

Status: code verified, 30 files readable, 6 matches

[27411] doi:10.7554/elife.94167 [paper, repository]

Pan-cortical 2-photon mesoscopic imaging and neurobehavioral alignment in awake, behaving mice.

Journal: eLife

Authors' code: vickerse1/mesoscope_spontaneous (BSD-3-Clause), sjara/uobrainflex (no license), lindermanlab/ssm (MIT), Zenodo 10966793 (CC-BY-4.0)

Status: code verified, 173 files readable, 9 matches

Tuesday, 28 May 2024 (37 papers)

[27412] doi:10.1007/s00406-024-01826-8 [paper]

Reduced contrast sensitivity, pattern electroretinogram ratio, and diminished a-wave amplitude in patients with major depressive disorder.

Journal: European archives of psychiatry and clinical neuroscience

Status: code on request

[27413] doi:10.1016/j.cub.2024.04.079 [paper]

CMTR-1 RNA methyltransferase mutations activate widespread expression of a dopaminergic neuron-specific mitochondrial complex I gene.

Journal: Current biology : CB

Status: code on request

[27414] doi:10.1016/j.isci.2024.110147 [paper, repository]

Endogenous retroviruses are dysregulated in ALS.

Journal: iScience

Authors' code: mhammell-laboratory/TEtranscripts (GPL-3.0), nickap5/Endogenous-Retroviruses-are-Dysregulated-in-ALS- (GPL-2.0), nickap5/Endogenous-Retroviruses-are-Dysregulated-in-ALS (no license)

Status: code verified, 34 files readable, 12 matches

[27415] doi:10.1016/j.isci.2024.110148 [paper]

Cocaine disrupts action flexibility via glucocorticoid receptors.

Journal: iScience

Status: code on request

[27416] doi:10.1016/j.isci.2024.110149 [paper]

Hyperactive mTORC1 disrupts habenula function and light preference in zebrafish model of Tuberous sclerosis complex.

Journal: iScience

Status: code on request

[27417] doi:10.1016/j.nicl.2024.103624 [paper, repository]

Cortical thickness and grey-matter volume anomaly detection in individual MRI scans: Comparison of two methods.

Journal: NeuroImage. Clinical

Authors' code: SCAN-NRAD/ScanOMetrics (BSD-3-Clause), scanometrics.readthedocs.io (no license), SCAN-NRAD/DL-DiReCT (BSD-3-Clause), Zenodo 14712270 (BSD-3-Clause), Zenodo 14712271 (BSD-3-Clause), Zenodo 14712214 (BSD-3-Clause), Zenodo 14712213 (BSD-3-Clause)

Status: code verified, 72 files readable, 10 matches

[27418] doi:10.1016/j.pacs.2024.100621 [paper, repository]

Learning-based sound speed estimation and aberration correction for linear-array photoacoustic imaging.

Journal: Photoacoustics

Authors' code: MengjieSHI/learning-based-sos-correction-us-pa (no license)

Status: code verified, 5 files readable, 2 matches

[27419] doi:10.1021/jacsau.4c00182 [paper, repository]

CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules.

Journal: JACS Au

Authors' code: KoubaPetr/CoVAMPnet (MIT)

Status: code verified, 20 files readable, 5 matches

[27420] doi:10.1038/s41386-024-01891-6 [paper, repository]

Acute effects of different types of cannabis on young adult and adolescent resting-state brain networks.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: OSF z638r (no license), OSF jg9qp (no license)

Status: empty repository

[27421] doi:10.1038/s41398-024-02939-3 [paper, repository]

Bidirectional two-sample Mendelian randomization analyses support causal relationships between structural and diffusion imaging-derived phenotypes and the risk of major neurodegenerative diseases.

Journal: Translational psychiatry

Authors' code: ziruiwang313/IDP_NDD_MR (no license)

Status: code verified, 1 file readable, 2 matches

[27422] doi:10.1038/s41398-024-02941-9 [paper]

Prenatal exposure to alcohol and its impact on reward processing and substance use in adulthood.

Journal: Translational psychiatry

Status: code on request

[27423] doi:10.1038/s41398-024-02945-5 [paper, repository]

Videogame training increases clinical well-being, attention and hippocampal-prefrontal functional connectivity in patients with schizophrenia.

Journal: Translational psychiatry

Authors' code: MaxiBecker/SCZ_Training (MIT)

Status: code verified, 3 files readable, 3 matches

[27424] doi:10.1038/s41590-024-01857-2 [paper, repository]

Nociceptor-immune interactomes reveal insult-specific immune signatures of pain.

Journal: Nature immunology

Authors' code: gyorilab/neuroimmune_interactome (no license)

Status: code verified, 5 files readable, 4 matches

[27425] doi:10.1038/s41597-024-03353-6 [paper, repository]

An fNIRS dataset for driving risk cognition of passengers in highly automated driving scenarios.

Journal: Scientific data

Authors' code: benchidefeng/fNIRS-experiment-for-automated-driving-scenarios (no license)

Status: code verified, 13 files readable, 3 matches

[27426] doi:10.1038/s41597-024-03380-3 [paper, repository]

Long non-coding RNAs expression and regulation across different brain regions in primates.

Journal: Scientific data

Authors' code: TransDecoder/TransDecoder (BSD-3-Clause), NavandarM/PrimBrainLnc (no license), NavandarM/lncRNA-expression-and-regulation-across-different-brain-regions-in-primates (no license)

Status: code verified, 533 files readable, 4 matches

[27427] doi:10.1038/s41598-024-61706-y [paper, repository]

Reconstructing rodent brain signals during euthanasia with eigensystem realization algorithm (ERA).

Journal: Scientific reports

Authors' code: kza4256/ERA-Demo (no license)

Status: code verified, 3 files readable

[27428] doi:10.1038/s42003-024-06361-9 [paper, repository]

Neural correlates of obesity across the lifespan.

Journal: Communications biology

Authors' code: FilipMorys/Obesity_maps (no license), KirstieJane/NSPN_WhitakerVertes_PNAS2016 (MIT), Zenodo 11068535 (CC-BY-4.0)

Status: code verified, 97 files readable, 2 matches

[27429] doi:10.1038/s44318-024-00118-0 [paper]

Neurons dispose of hyperactive kinesin into glial cells for clearance.

Journal: The EMBO journal

Status: data only

[27430] doi:10.1073/pnas.2314213121 [paper, data]

Deep sequencing of Phox2a nuclei reveals five classes of anterolateral system neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27431] doi:10.1073/pnas.2318740121 [paper, data]

Neuronal differentiation requires BRAT1 complex to remove REST from chromatin.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27432] doi:10.1088/1741-2552/ad4916 [paper, repository]

PyHFO: lightweight deep learning-powered end-to-end high-frequency oscillations analysis application.

Journal: Journal of neural engineering

Authors' code: roychowdhuryresearch/pyHFO (other), roychowdhuryresearch/hfo-classification (no license)

Status: code verified, 1,627 files readable, 10 matches

[27433] doi:10.1186/s12864-024-10447-3 [paper]

Single-nucleus analysis reveals microenvironment-specific neuron and glial cell enrichment in Alzheimer's disease.

Journal: BMC genomics

Status: data only

[27434] doi:10.1186/s12974-024-03133-4 [paper, data]

Inhibition of mannan-binding lectin associated serine protease (MASP)-2 reduces the cognitive deficits in a mouse model of severe traumatic brain injury.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[27435] doi:10.1186/s13059-024-03271-1 [paper, data]

ePRINT: exonuclease assisted mapping of protein-RNA interactions.

Journal: Genome biology

Status: data only, 1 dataset cited

[27436] doi:10.1242/dev.202209 [paper, repository]

Investigating the basis of lineage decisions and developmental trajectories in the dorsal spinal cord through pseudotime analyses.

Journal: Development (Cambridge, England)

Authors' code: Zenodo 11154386 (CC-BY-4.0), Zenodo 11154385 (CC-BY-4.0)

Status: code verified, 34 files readable, 12 matches

[27437] doi:10.12688/f1000research.148102.1 [paper, repository]

Effectiveness of Mannitol Use on Clinical Outcomes of Severe Traumatic Brain Injury Patients.

Journal: F1000Research

Authors' code: Zenodo 11091191 (CC-BY-4.0), Zenodo 11113667 (CC-BY-4.0)

Status: empty repository

[27438] doi:10.1371/journal.pbio.3002642 [paper, repository]

Leveraging interindividual variability in threat conditioning of inbred mice to model trait anxiety.

Journal: PLoS biology

Authors' code: Zenodo 10926698 (CC-BY-4.0)

Status: code verified, 4 files readable, 18 matches

[27439] doi:10.1371/journal.pcbi.1011605 [paper, data]

Adaptive modeling and inference of higher-order coordination in neuronal assemblies: A dynamic greedy estimation approach.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[27440] doi:10.1371/journal.pcbi.1012111 [paper, repository]

Dorsal and median raphe neuronal firing dynamics characterized by nonlinear measures.

Journal: PLoS computational biology

Authors' code: Cpasco/Entropy_Raphe (no license)

Status: code verified, 5 files readable, 1 match

[27441] doi:10.1371/journal.pcbi.1012175 [paper, repository]

Surprise-minimization as a solution to the structural credit assignment problem.

Journal: PLoS computational biology

Authors' code: fwurm/2023_Wurm_SurpriseMinimization (CC-BY-4.0)

Status: code verified, 28 files readable, 12 matches

[27442] doi:10.1371/journal.pgen.1011278 [paper, repository]

Clock-dependent chromatin accessibility rhythms regulate circadian transcription.

Journal: PLoS genetics

Authors' code: yeyuan98/pub_ATAC_2024 (GPL-3.0), yeyuan98/edgeCounter (GPL-3.0)

Status: code verified, 15 files readable, 2 matches

[27443] doi:10.1523/eneuro.0187-24.2024 [paper, repository]

Phase Delays between Mouse Globus Pallidus Neurons Entrained by Common Oscillatory Drive Arise from Their Intrinsic Properties, Not Their Coupling.

Journal: eNeuro

Authors' code: eolivaresb/Phase-locking-and-correlations-in-globus-pallidus (MIT)

Status: code verified, 34 files readable, 7 matches

[27444] doi:10.1523/eneuro.0252-23.2024 [paper, repository]

Spatiotemporal Organization of Prefrontal Norepinephrine Influences Neuronal Activity.

Journal: eNeuro

Authors' code: kayelab/nejrgeco (no license)

Status: code verified, 33 files readable, 5 matches

[27445] doi:10.21037/tcr-23-2286 [paper, data]

Expression and prognostic significance of microsomal triglyceride transfer protein in brain tumors: a retrospective cohort study.

Journal: Translational cancer research

Status: data only, 1 dataset cited

[27446] doi:10.3389/fncom.2024.1398898 [paper, repository]

Simulated dynamical transitions in a heterogeneous marmoset pFC cluster.

Journal: Frontiers in computational neuroscience

Authors' code: BrainDynamicsUSYD/MarmosetCortex (no license)

Status: code verified, 12 files readable, 9 matches

[27447] doi:10.3389/fneur.2024.1391010 [paper, data]

Association between ABO genotypes and risk of dementia and neuroimaging markers: roles of sex and APOE status.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[27448] doi:10.3390/biomimetics9060321 [paper, repository]

SonoNERFs: Neural Radiance Fields Applied to Biological Echolocation Systems Allow 3D Scene Reconstruction through Perceptual Prediction.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: Cosys-Lab/SonoNERF (MIT)

Status: code verified, 102 files readable, 2 matches

Monday, 27 May 2024 (22 papers)

[27449] doi:10.1016/j.clinph.2024.05.010 [paper, data]

Optimizing automated detection of high frequency oscillations using visual markings does not improve SOZ localization.

Journal: Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology

Status: data only, 1 dataset cited

[27450] doi:10.1038/s41380-024-02612-7 [paper, data]

Disease-specific alterations in central fear network engagement during acquisition and extinction of conditioned interoceptive fear in inflammatory bowel disease.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[27451] doi:10.1038/s41467-024-48683-6 [paper, repository]

Noninvasive imaging-guided ultrasonic neurostimulation with arbitrary 2D patterns and its application for high-quality vision restoration.

Journal: Nature communications

Authors' code: gengxilu/UltrasoundRP (MIT), Zenodo 10989656 (CC-BY-4.0)

Status: code verified, 8 files readable

[27452] doi:10.1038/s41467-024-48757-5 [paper, repository]

Glioblastoma disrupts cortical network activity at multiple spatial and temporal scales.

Journal: Nature communications

Authors' code: Zenodo 10954324 (CC-BY-4.0), trajektorie/nat_comms_code_20240408 (GPL-3.0)

Status: code verified, 4 files readable

[27453] doi:10.1038/s41467-024-48776-2 [paper, data]

Apo and Aβ46-bound γ-secretase structures provide insights into amyloid-β processing by the APH-1B isoform.

Journal: Nature communications

Status: data only, 2 datasets cited

[27454] doi:10.1038/s41467-024-48924-8 [paper, data]

Organization of corticocortical and thalamocortical top-down inputs in the primary visual cortex.

Journal: Nature communications

Status: data only, 1 dataset cited

[27455] doi:10.1038/s41562-024-01887-8 [paper, repository]

Evolutionary-developmental (evo-devo) dynamics of hominin brain size.

Journal: Nature human behaviour

Authors' code: Zenodo 10887414 (CC-BY-4.0), Zenodo 7801640 (CC-BY-4.0)

Status: code verified, 58 files readable, 14 matches

[27456] doi:10.1038/s41562-024-01899-4 [paper, data]

Human ventromedial prefrontal cortex is necessary for prosocial motivation.

Journal: Nature human behaviour

Status: data only, 1 dataset cited

[27457] doi:10.1038/s41587-024-02249-5 [paper, repository]

Long-term intravital subcellular imaging with confocal scanning light-field microscopy.

Journal: Nature biotechnology

Authors' code: THU-IBCS/csLFM-master (GPL-2.0), Zenodo 8198063 (CC-BY-4.0)

Status: code verified, 11 files readable, 4 matches

[27458] doi:10.1038/s42003-024-06345-9 [paper]

Altered projection-specific synaptic remodeling and its modification by oxytocin in an idiopathic autism marmoset model.

Journal: Communications biology

Status: data only

[27459] doi:10.1186/s12885-024-12399-z [paper, repository]

Multi-omics profiling reveals dysregulated ribosome biogenesis and impaired cell proliferation following knockout of CDR2L.

Journal: BMC cancer

Authors' code: ETSunhome (no license)

Status: code verified

[27460] doi:10.1186/s12967-024-05121-x [paper, data]

Molecular signatures in prion disease: altered death receptor pathways in a mouse model.

Journal: Journal of translational medicine

Status: data only, 2 datasets cited

[27461] doi:10.1186/s12974-024-03136-1 [paper, data]

Hyperglycemia enhances brain susceptibility to lipopolysaccharide-induced neuroinflammation via astrocyte reprogramming.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[27462] doi:10.1186/s12987-024-00547-3 [paper, data]

The circadian clock in the choroid plexus drives rhythms in multiple cellular processes under the control of the suprachiasmatic nucleus.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[27463] doi:10.1186/s13148-024-01678-y [paper]

No association between peripheral serotonin-gene-related DNA methylation and brain serotonin neurotransmission in the healthy and depressed state.

Journal: Clinical epigenetics

Status: code on request

[27464] doi:10.3389/fneur.2024.1407598 [paper, data]

Enhancing stroke risk prediction in patients with transient ischemic attack: insights from a prospective cohort study implementing fast-track care.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[27465] doi:10.3389/fnins.2024.1406821 [paper, repository]

PyHySCO: GPU-enabled susceptibility artifact distortion correction in seconds.

Journal: Frontiers in neuroscience

Authors' code: EmoryMLIP/PyHySCO (GPL-3.0), hjmshi/PyTorch-LBFGS (MIT)

Status: code verified, 47 files readable, 28 matches

[27466] doi:10.3389/fphar.2024.1390187 [paper, data]

Adenosine A&lt;sub&gt;2A&lt;/sub&gt; and dopamine D&lt;sub&gt;2&lt;/sub&gt; receptor interaction controls fatigue resistance.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[27467] doi:10.3390/ani14111588 [paper, repository]

The First Genetic Characterization of the <i>SPRN</i> Gene in Pekin Ducks (<i>Anas platyrhynchos domesticus</i>).

Journal: Animals : an open access journal from MDPI

Authors' code: sokrypton/colabfold (MIT)

Status: code verified, 74 files readable

[27468] doi:10.3390/cimb46060319 [paper, data]

Endocrine and Transcriptome Changes Associated with Testicular Growth and Differentiation in Atlantic Salmon (<i>Salmo salar</i> L.).

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[27469] doi:10.3390/diagnostics14111109 [paper, data]

White Matter Hyperintensity in Patients with Sudden Sensorineural Hearing Loss.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[27470] doi:10.7150/ijms.95598 [paper, data]

Retinal ganglion cell type-specific expression of synuclein family members revealed by scRNA-sequencing.

Journal: International journal of medical sciences

Status: data only, 1 dataset cited

Sunday, 26 May 2024 (4 papers)

[27471] doi:10.1016/j.nicl.2024.103623 [paper, repository]

Geodesic shape regression based deep learning segmentation for assessing longitudinal hippocampal atrophy in dementia progression.

Journal: NeuroImage. Clinical

Authors' code: calliegao/ARMM (no license)

Status: code verified, 2 files readable

[27472] doi:10.1177/10870547241253999 [paper, repository]

A Network Approach to Understanding the Role of Executive Functioning and Alpha Oscillations in Inattention and Hyperactivity-Impulsivity Symptoms of ADHD.

Journal: Journal of attention disorders

Authors' code: tinyurl.com/nv4hdpwk (no license)

Status: code verified

[27473] doi:10.3390/ijms25115779 [paper, repository]

Structural Features Influencing the Bioactive Conformation of Angiotensin II and Angiotensin A: Relationship between Receptor Desensitization, Addiction, and the Blood-Brain Barrier.

Journal: International journal of molecular sciences

Authors' code: nhmrc.gov.au/about-us/publications (no license)

Status: code found, still to be checked

[27474] doi:10.7759/cureus.61138 [paper, repository]

Common Relationship Between Causality Orientation and the Prefrontal Region in Psychiatric Disorders as Revealed by Diffusional Kurtosis Imaging.

Journal: Cureus

Authors' code: sulantha2006/VoxelStats (other)

Status: code verified, 189 files readable, 2 matches

Saturday, 25 May 2024 (14 papers)

[27475] doi:10.1007/s00429-024-02792-6 [paper, repository]

Intelligence and cortical morphometry: caveats in brain-behavior associations.

Journal: Brain structure & function

Authors' code: vandadim/IQ_prediction (MIT), Zenodo 11121851 (MIT), Zenodo 11121850 (MIT)

Status: code verified, 18 files readable, 7 matches

[27476] doi:10.1016/j.celrep.2024.114244 [paper, repository]

Stimulus information guides the emergence of behavior-related signals in primary somatosensory cortex during learning.

Journal: Cell reports

Authors' code: cortex-lab/suite2p (other), rmaffulli/nit (no license)

Status: code verified, 426 files readable, 6 matches

[27477] doi:10.1016/j.ymthe.2024.05.029 [paper, repository]

AAV-mediated gene therapy for sialidosis.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Authors' code: stjude/dab_detection (no license)

Status: dead link

[27478] doi:10.1038/s41398-024-02930-y [paper, data]

Oxytocin attenuates hypothalamic injury-induced cognitive dysfunction by inhibiting hippocampal ERK signaling and Aβ deposition.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[27479] doi:10.1038/s41419-024-06757-9 [paper]

Mitochondrial iron deficiency triggers cytosolic iron overload in PKAN hiPS-derived astrocytes.

Journal: Cell death & disease

Status: code on request

[27480] doi:10.1038/s41467-024-47811-6 [paper, repository]

Spike-based dynamic computing with asynchronous sensing-computing neuromorphic chip.

Journal: Nature communications

Authors' code: zhangxiann/TPAMI_Gait_Identification (no license), Event-AHU/HARDVS (Apache-2.0), BICLab (no license)

Status: code verified, 222 files readable, 1 match

[27481] doi:10.1038/s41467-024-48577-7 [paper, repository]

Synergizing habits and goals with variational Bayes.

Journal: Nature communications

Authors' code: Zenodo 10987473 (Apache-2.0), oist-cnru/The-Bayesian-Behavior-Framework (no license), scottclowe/superbar (BSD-2-Clause)

Status: code verified, 32 files readable, 8 matches

[27482] doi:10.1038/s41467-024-48664-9 [paper, repository]

Neuronal activation sequences in lateral prefrontal cortex encode visuospatial working memory during virtual navigation.

Journal: Nature communications

Authors' code: mullerlab/buschEAsequences (no license)

Status: code verified, 13 files readable, 3 matches

[27483] doi:10.1038/s41467-024-48734-y [paper, repository]

Lipidome atlas of the adult human brain.

Journal: Nature communications

Authors' code: Zenodo 10908108 (CC-BY-4.0)

Status: code verified

[27484] doi:10.1038/s41598-024-62934-y [paper]

Discriminating orientation information with phase consistency in alpha and low-gamma frequency bands: an EEG study.

Journal: Scientific reports

Status: code on request

[27485] doi:10.1038/s42003-024-06349-5 [paper, repository]

SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics.

Journal: Communications biology

Authors' code: swainasish/SpatialPrompt (GPL-3.0), Zenodo 11070217 (CC-BY-4.0)

Status: code verified, 58 files readable, 5 matches

[27486] doi:10.1159/000539506 [paper, data]

Structural and Functional Effects of C5aR1 Antagonism in a Rat Model of Neonatal Hypoxic-Ischemic Encephalopathy.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[27487] doi:10.1186/s12864-024-10434-8 [paper, repository]

Spatial transcriptomic brain imaging reveals the effects of immunomodulation therapy on specific regional brain cells in a mouse dementia model.

Journal: BMC genomics

Authors' code: bsungwoo/STquantool (other)

Status: code verified, 9 files readable, 4 matches

[27488] doi:10.1186/s12868-024-00871-2 [paper, repository]

Automated glioblastoma patient classification using hypoxia levels measured through magnetic resonance images.

Journal: BMC neuroscience

Authors' code: Jfortin1/ComBatHarmonization (no license)

Status: code verified, 17 files readable

Friday, 24 May 2024 (30 papers)

[27489] doi:10.1007/s00018-024-05258-4 [paper, data]

Proteomic dissection of vanishing white matter pathogenesis.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[27490] doi:10.1007/s42113-024-00202-y [paper, repository]

Exploration-Exploitation Mechanisms in Recurrent Neural Networks and Human Learners in Restless Bandit Problems.

Journal: Computational brain & behavior

Authors' code: deniztu/p1_generalization (no license)

Status: code verified, 62 files readable, 12 matches

[27491] doi:10.1016/j.celrep.2024.114278 [paper]

Hippocampal astrocytes induce sex-dimorphic effects on memory.

Journal: Cell reports

Status: code on request

[27492] doi:10.1016/j.celrep.2024.114282 [paper]

A brain-derived insulin signal encodes protein satiety for nutrient-specific feeding inhibition.

Journal: Cell reports

Status: code on request

[27493] doi:10.1016/j.dcn.2024.101393 [paper, data]

Interactive effects of participant and stimulus race on cognitive performance in youth: Insights from the ABCD study.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[27494] doi:10.1016/j.isci.2024.110099 [paper]

Gap junctions fine-tune ganglion cell signals to equalize response kinetics within a given electrically coupled array.

Journal: iScience

Status: code on request

[27495] doi:10.1016/j.isci.2024.110101 [paper, repository]

The virtual multiple sclerosis patient.

Journal: iScience

Authors' code: ins-amu/virtual_ms (no license), CompImg/LST-AI (MIT)

Status: code verified, 44 files readable, 8 matches

[27496] doi:10.1016/j.isci.2024.110108 [paper]

Investigating cerebral neurovascular responses to hyperglycemia in a rat model of type 2 diabetes using multimodal assessment techniques.

Journal: iScience

Status: code on request

[27497] doi:10.1016/j.neuron.2024.04.035 [paper, repository]

Compensatory enhancement of input maintains aversive dopaminergic reinforcement in hungry Drosophila.

Journal: Neuron

Authors' code: seung-lab/CAVEclient (MIT), seung-lab/cloud-volume (BSD-3-Clause), google/neuroglancer (Apache-2.0), navis-org/navis (GPL-3.0)

Status: code verified, 1,348 files readable, 1 match

[27498] doi:10.1016/j.ymthe.2024.05.030 [paper]

Neuroglobin overexpression in cerebellar neurons of Harlequin mice improves mitochondrial homeostasis and reduces ataxic behavior.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: code on request

[27499] doi:10.1038/s41467-024-48331-z [paper, repository]

Hyperactivity of indirect pathway-projecting spiny projection neurons promotes compulsive behavior.

Journal: Nature communications

Authors' code: Zenodo 10790736 (CC-BY-4.0)

Status: code verified, 11 files readable, 3 matches

[27500] doi:10.1038/s41598-024-61404-9 [paper, repository]

Prolonged intermittent theta burst stimulation targeting the left prefrontal cortex and cerebellum does not affect executive functions in healthy individuals.

Journal: Scientific reports

Authors' code: EchoXu9/LDPFC-Cerebellum-iTBS (no license)

Status: code verified, 15 files readable, 1 match

[27501] doi:10.1038/s41598-024-62106-y [paper]

Choosing a camera and optimizing system parameters for speckle contrast optical spectroscopy.

Journal: Scientific reports

Status: code on request

[27502] doi:10.1038/s41598-024-62500-6 [paper, repository]

A novel transcranial MR Guided focused ultrasound method based on the ultrashort echo time skull acoustic model and phase retrieval techniques.

Journal: Scientific reports

Authors' code: ricedsp/prDeep (BSD-3-Clause)

Status: code verified, 11 files readable, 1 match

[27503] doi:10.1038/s41598-024-62562-6 [paper]

Dynamical and individualised approach of transcranial ultrasound neuromodulation effects in non-human primates.

Journal: Scientific reports

Status: code on request

[27504] doi:10.1038/s42003-024-06328-w [paper, data]

In vivo cyclic overexpression of Yamanaka factors restricted to neurons reverses age-associated phenotypes and enhances memory performance.

Journal: Communications biology

Status: data only, 1 dataset cited

[27505] doi:10.1038/s44321-024-00073-7 [paper]

Neuraminidase inhibition promotes the collective migration of neurons and recovery of brain function.

Journal: EMBO molecular medicine

Status: data only

[27506] doi:10.1093/zoolinnean/zlae060 [paper, repository]

Divergent patterns of cranial suture fusion in marsupial and placental mammals.

Journal: Zoological journal of the Linnean Society

Authors' code: HeatherEWhite/mammal_suture_fusion (MIT), Zenodo 11150953 (CC-BY-4.0)

Status: code verified, 12 files readable, 13 matches

[27507] doi:10.1097/j.pain.0000000000003245 [paper, data]

Eliciting the rubber hand illusion by the activation of nociceptive C and Aδ fibers.

Journal: Pain

Status: data only, 1 dataset cited

[27508] doi:10.1126/sciadv.adj8769 [paper, repository]

A brain-enriched circular RNA controls excitatory neurotransmission and restricts sensitivity to aversive stimuli.

Journal: Science advances

Authors' code: ipatop/shRNAtools (other)

Status: code verified, 13 files readable, 3 matches

[27509] doi:10.1242/dmm.050612 [paper, repository]

A small-molecule TrkB ligand improves dendritic spine phenotypes and atypical behaviors in female Rett syndrome mice.

Journal: Disease models & mechanisms

Authors' code: motr/motr (GNU)

Status: code verified, 815 files readable

[27510] doi:10.1371/journal.pone.0296548 [paper, repository]

Delayed center of mass feedback in elderly humans leads to greater muscle co-contraction and altered balance strategy under perturbed balance: A predictive musculoskeletal simulation study.

Journal: PloS one

Authors' code: figshare 25480828 (CC-BY-4.0)

Status: code verified, 1 file readable

[27511] doi:10.1371/journal.pone.0304064 [paper, data]

NMY-2, TOE-2 and PIG-1 regulate Caenorhabditis elegans asymmetric cell divisions.

Journal: PloS one

Status: data only, 1 dataset cited

[27512] doi:10.1523/eneuro.0520-23.2024 [paper, repository]

RNA Sequencing Demonstrates Ex Vivo Neocortical Transcriptomic Changes Induced by Epileptiform Activity in Male and Female Mice.

Journal: eNeuro

Authors' code: rb.gy/spf86r (no license)

Status: code verified

[27513] doi:10.3389/fnins.2024.1339479 [paper, data]

Binocularly suppressed stimuli induce brain activities related to aesthetic emotions.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[27514] doi:10.3389/fpubh.2024.1349169 [paper, repository]

Knowledge and attitudes toward mild traumatic brain injury among patients and family members.

Journal: Frontiers in public health

Authors' code: wjx.cn/app/survey.aspx (no license)

Status: code verified

[27515] doi:10.3390/genes15060680 [paper, repository]

Whole-Genome Sequencing Identified a Novel Mutation in the N-Terminal Domain of <i>KIF5A</i> in Chinese Patients with Familial Amyotrophic Lateral Sclerosis.

Journal: Genes

Authors' code: hall-lab/speedseq (MIT)

Status: code verified, 200 files readable

[27516] doi:10.3390/ijms25115703 [paper, repository]

Matrix Remodeling Enzymes as Potential Fluid Biomarkers of Neurodegeneration in Alzheimer's Disease.

Journal: International journal of molecular sciences

Authors' code: Zenodo 10402363 (CC-BY-4.0)

Status: empty repository

[27517] doi:10.3390/ijms25115731 [paper, data]

Longitudinal Neuropathological Consequences of Extracranial Radiation Therapy in Mice.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[27518] doi:10.3390/nu16111604 [paper]

The Mediterranean Diet in Pregnancy: Implications for Maternal Brain Morphometry in a Secondary Analysis of the IMPACT BCN Randomized Clinical Trial.

Journal: Nutrients

Status: code on request

Thursday, 23 May 2024 (42 papers, 34 on this page)

[27519] doi:10.1002/alz.13903 [paper, data]

Clusters of cognitive performance predict long-term cognitive impairment in elderly patients with subjective memory complaints and healthy controls.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[27520] doi:10.1007/s10916-024-02066-y [paper, repository]

Back to the Roots: Reconstructing Large and Complex Cranial Defects using an Image-based Statistical Shape Model.

Journal: Journal of medical systems

Authors' code: figshare 19328816 (CC-BY-4.0), Jianningli/ssm (no license)

Status: code verified, 2 files readable

[27521] doi:10.1016/j.artmed.2024.102898 [paper, data]

Neural topic models with survival supervision: Jointly predicting time-to-event outcomes and learning how clinical features relate.

Journal: Artificial intelligence in medicine

Status: data only, 1 dataset cited

[27522] doi:10.1016/j.ebiom.2024.105160 [paper, repository]

Association between hearing ability and cortical morphology in the elderly: multiparametric mapping, cognitive relevance, and neurobiological underpinnings.

Journal: EBioMedicine

Authors' code: canlab/MediationToolbox (no license), OSF fs6pa (no license), juryxy/JuSpace (no license)

Status: code verified, 235 files readable, 3 matches

[27523] doi:10.1016/j.heliyon.2024.e31827 [paper, data]

A real-time epilepsy seizure detection approach based on EEG using short-time Fourier transform and Google-Net convolutional neural network.

Journal: Heliyon

Status: data only, 1 dataset cited

[27524] doi:10.1016/j.isci.2024.110033 [paper]

Topiramate suppresses peri-infarct spreading depolarization and improves outcomes in a rat model of photothrombotic stroke.

Journal: iScience

Status: code on request

[27525] doi:10.1016/j.isci.2024.110065 [paper, repository]

Thalamocortical interactions shape hierarchical neural variability during stimulus perception.

Journal: iScience

Authors' code: AdTau/DI-Inference (LGPL-2.1), mvilavidal/DI-Inference-for-Python (GPL-2.0), rauladse/thalamocortical-interactions-shape-hierarchical-neural-variability-during-stimulus-perception (MIT), adtau/di-inference,github.com (no license)

Status: code verified, 20 files readable, 4 matches

[27526] doi:10.1016/j.isci.2024.110094 [paper]

Cytosolic dopamine determines hypersensitivity to blunt force trauma.

Journal: iScience

Status: code on request

[27527] doi:10.1016/j.nicl.2024.103620 [paper, repository]

Fine hippocampal morphology analysis with a multi-dataset cross-sectional study on 2911 subjects.

Journal: NeuroImage. Clinical

Authors' code: YangQinzhu/Hippocampus-Shape-Analysis (no license)

Status: code verified, 8 files readable

[27528] doi:10.1016/j.ymthe.2024.05.001 [paper, data]

Targeted rescue of synaptic plasticity improves cognitive decline in sepsis-associated encephalopathy.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 1 dataset cited

[27529] doi:10.1038/s41467-024-48827-8 [paper, repository]

The brain structure, inflammatory, and genetic mechanisms mediate the association between physical frailty and depression.

Journal: Nature communications

Authors' code: Jiang-brain/frailty-depression (no license), Zenodo 10999403 (CC-BY-4.0)

Status: code verified, 2 files readable

[27530] doi:10.1038/s41598-024-60968-w [paper]

Transfontanellar shear wave elastography of the neonatal brain for quantitative evaluation of white matter damage.

Journal: Scientific reports

Status: code on request

[27531] doi:10.1038/s41598-024-61232-x [paper, data]

Softly empowering a prosocial expert in the family: lasting effects of a counter-misinformation intervention in an informational autocracy.

Journal: Scientific reports

Status: data only, 2 datasets cited

[27532] doi:10.1038/s41598-024-62411-6 [paper, data]

Assessing the efficacy of 2D and 3D CNN algorithms in OCT-based glaucoma detection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27533] doi:10.1038/s42003-024-06329-9 [paper, data]

The role of elasticity on adhesion and clustering of neurons on soft surfaces.

Journal: Communications biology

Status: data only, 1 dataset cited

[27534] doi:10.1038/s44321-024-00079-1 [paper]

Diabetes drugs activate neuroprotective pathways in models of neonatal hypoxic-ischemic encephalopathy.

Journal: EMBO molecular medicine

Status: data only

[27535] doi:10.1073/pnas.2400648121 [paper, data]

Astrocyte-to-microglia communication via Sema4B-Plexin-B2 modulates injury-induced reactivity of microglia.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27536] doi:10.1080/21505594.2024.2355971 [paper, data]

M1-type polarized macrophage contributes to brain damage through CXCR3.2/CXCL11 pathways after RGNNV infection in grouper.

Journal: Virulence

Status: data only, 1 dataset cited

[27537] doi:10.1093/braincomms/fcae174 [paper, repository]

Brain network changes and cognitive function after cardiac arrest.

Journal: Brain communications

Authors' code: CPernet/spmup (GPL-3.0), fishpm/revival (no license)

Status: code verified, 81 files readable, 4 matches

[27538] doi:10.1126/sciadv.adh2588 [paper, repository]

Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data.

Journal: Science advances

Authors' code: Zenodo 8175819 (CC-BY-4.0), RujiaDai/BrainDeconBenchmark (no license)

Status: code verified, 25 files readable, 8 matches

[27539] doi:10.1126/sciadv.adj4452 [paper, repository]

Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements.

Journal: Science advances

Authors' code: weng-lab/chrombpnet-workflow (MIT), kundajelab/chrombpnet (MIT), weng-lab/ldr (GPL-3.0), weng-lab/api-gateways (no license), weng-lab/psychscreen (MIT), cgl.gi.ucsc.edu/data/cactus (no license), Zenodo 10605867 (CC-BY-4.0), Zenodo 7567627 (MIT)

Status: code verified, 291 files readable, 17 matches

[27540] doi:10.1126/sciadv.adn7655 [paper, repository]

Brain cell-type shifts in Alzheimer's disease, autism, and schizophrenia interrogated using methylomics and genetics.

Journal: Science advances

Authors' code: gandallab/brain_CTP_deconv (no license), Zenodo 10624889 (CC-BY-4.0)

Status: code verified, 43 files readable, 23 matches

[27541] doi:10.1126/sciadv.adn7744 [paper, repository]

Predicting the next sentence (not word) in large language models: What model-brain alignment tells us about discourse comprehension.

Journal: Science advances

Authors' code: OSF 94y7h (no license)

Status: code verified, 1 file readable

[27542] doi:10.1155/2024/4523388 [paper, data]

Intelligent Stroke Disease Prediction Model Using Deep Learning Approaches.

Journal: Stroke research and treatment

Status: data only, 1 dataset cited

[27543] doi:10.1172/jci.insight.179853 [paper, repository]

Spatial analysis of recurrent glioblastoma reveals perivascular niche organization.

Journal: JCI insight

Authors' code: mjaniszewska-lab/IF-STAR-FISH (no license), MathOnco/onubogu_spatial_analysis_of_recurrent_glioblastoma (MIT), drieslab/giotto (other), satijalab/seurat (other)

Status: code verified, 220 files readable, 13 matches

[27544] doi:10.1177/17562864241253901 [paper, repository]

Differential risk factor profile and neuroimaging markers of small vessel disease between lacunar ischemic stroke and deep intracerebral hemorrhage.

Journal: Therapeutic advances in neurological disorders

Authors' code: datashare.ed.ac.uk/handle/10283 (no license)

Status: code verified

[27545] doi:10.1186/s12915-024-01911-3 [paper, repository]

Modality-specific effects of threat on self-motion perception.

Journal: BMC biology

Authors' code: figshare 25707660 (CC-BY-4.0)

Status: code verified, 11 files readable

[27546] doi:10.1186/s12915-024-01919-9 [paper, repository]

Deep behavioural phenotyping of the Q175 Huntington disease mouse model: effects of age, sex, and weight.

Journal: BMC biology

Authors' code: cameron-woodard/PiPaw (MIT), tf4ong/PMT (no license), Zenodo 11124082 (CC-BY-4.0), Zenodo 11180014 (CC-BY-4.0), Zenodo 11182899 (CC-BY-4.0), Zenodo 11177566 (CC-BY-4.0), Zenodo 11186949 (CC-BY-4.0)

Status: code verified, 76 files readable, 4 matches

[27547] doi:10.1186/s13041-024-01101-w [paper]

Region-specific activation in the accumbens nucleus by itch with modified scratch efficacy in mice - a model-free multivariate analysis.

Journal: Molecular brain

Status: code on request

[27548] doi:10.1242/dev.202292 [paper, data]

Foxg1 bimodally tunes L1-mRNA and -DNA dynamics in the developing murine neocortex.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[27549] doi:10.1371/journal.pcbi.1011973 [paper, repository]

Modeling oxygen transport in the brain: An efficient coarse-grid approach to capture perivascular gradients in the parenchyma.

Journal: PLoS computational biology

Authors' code: Zenodo 8383820 (no license)

Status: code verified

[27550] doi:10.1371/journal.pcbi.1012056 [paper, repository]

Diverse task-driven modeling of macaque V4 reveals functional specialization towards semantic tasks.

Journal: PLoS computational biology

Authors' code: sacadena/neurovisfit (MIT), dicarlolab/CORnet (GPL-3.0), sinzlab/neuralpredictors (MIT), sinzlab/nnfabrik (no license), sacadena/ptrnets (MIT)

Status: code verified, 205 files readable, 10 matches

[27551] doi:10.1371/journal.pcbi.1012086 [paper, repository]

Learning with sparse reward in a gap junction network inspired by the insect mushroom body.

Journal: PLoS computational biology

Authors' code: InsectRobotics/DynamicRoutingPublish (no license)

Status: code verified, 31 files readable, 5 matches

[27552] doi:10.1371/journal.pone.0303565 [paper, data]

An auditory brain-computer interface based on selective attention to multiple tone streams.

Journal: PloS one

Status: data only, 2 datasets cited

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