Every paper, by date: page 124

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 124 of 200: 23 May 2024 to 15 May 2024.

Thursday, 23 May 2024 (42 papers, 8 on this page)

[27553] doi:10.1371/journal.pone.0304234 [paper, repository]

Brain health index as a predictor of possible vascular dementia in the Mexican health and aging study 2012-2015.

Journal: PloS one

Authors' code: scielo.org.mx/scielo.php (no license)

Status: code verified

[27554] doi:10.1371/journal.pone.0304356 [paper, repository]

Opening the dialogue: A preliminary exploration of hair color, hair cleanliness, light, and motion effects on fNIRS signal quality.

Journal: PloS one

Authors' code: lpollonini/qt-nirs (CC-BY-NC-SA-4.0)

Status: code verified, 12 files readable, 1 match

[27555] doi:10.18632/aging.205856 [paper, data]

Sensitivity of substrate translocation in chaperone-mediated autophagy to Alzheimer's disease progression.

Journal: Aging

Status: code on request, 1 dataset cited

[27556] doi:10.30773/pi.2023.0149 [paper, data]

Informational Analysis and Prediction of Obsessive-Compulsive Disorder Pathogenesis.

Journal: Psychiatry investigation

Status: data only, 1 dataset cited

[27557] doi:10.3389/fnana.2024.1388084 [paper, repository]

A complementary approach for neocortical cytoarchitecture inspection with cellular resolution imaging at whole brain scale.

Journal: Frontiers in neuroanatomy

Authors' code: atlas.brainsmatics.org/a/zhong2019 (no license)

Status: code verified

[27558] doi:10.3389/fninf.2024.1292667 [paper, data]

Events in context-The HED framework for the study of brain, experience and behavior.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[27559] doi:10.3390/biomimetics9060314 [paper, repository]

Innate Orientating Behavior of a Multi-Legged Robot Driven by the Neural Circuits of <i>C. elegans</i>.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: hukangxin/c.-elegans-whole-brain-neural-network-building-and-simulation (no license)

Status: code verified, 75 files readable

[27560] doi:10.34133/research.0366 [paper, repository]

Deep Learning Model Coupling Wearable Bioelectric and Mechanical Sensors for Refined Muscle Strength Assessment.

Journal: Research (Washington, D.C.)

Authors' code: Zenodo 8361754 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

Wednesday, 22 May 2024 (35 papers)

[27561] doi:10.1007/s42761-024-00237-1 [paper, repository]

Neural Reactivity to Social Reward Moderates the Association Between Social Media Use and Momentary Positive Affect in Adolescents.

Journal: Affective science

Authors' code: Kodiologist/Survivor (gnu)

Status: empty repository, 1 file readable

[27562] doi:10.1016/j.dib.2024.110535 [paper, repository]

WheelSimPhysio-2023 dataset: Physiological and questionnaire-based dataset of immersive multisensory wheelchair simulator from 58 participants.

Journal: Data in brief

Authors' code: tadasbaltrusaitis/openface (other)

Status: code verified, 1,733 files readable

[27563] doi:10.1016/j.gendis.2024.101337 [paper, data]

Gene interactions analysis of brain spatial transcriptome for Alzheimer's disease.

Journal: Genes & diseases

Status: data only, 1 dataset cited

[27564] doi:10.1016/j.heliyon.2024.e31699 [paper, repository]

Effect of dry needling on pain and central sensitization in women with chronic pelvic pain: A randomized parallel-group controlled clinical trial.

Journal: Heliyon

Authors' code: sccn.ucsd.edu/eeglab/index.html (no license)

Status: dead link

[27565] doi:10.1016/j.isci.2024.110043 [paper]

Neuronal response of the primate striatum tail to face of socially familiar persons.

Journal: iScience

Status: code on request

[27566] doi:10.1016/j.isci.2024.110047 [paper]

Robust GRK2/3/6-dependent desensitization of oxytocin receptor in neurons.

Journal: iScience

Status: code on request

[27567] doi:10.1016/j.isci.2024.110052 [paper, data]

Caste-biased patterns of brain investment in the subterranean termite <i>Reticulitermes flavipes</i>.

Journal: iScience

Status: code on request, 1 dataset cited

[27568] doi:10.1016/j.isci.2024.110076 [paper]

Sleep-dependent decorrelation of hippocampal spatial representations.

Journal: iScience

Status: code on request

[27569] doi:10.1016/j.isci.2024.110078 [paper, data]

Ciliogenesis defects after neurulation impact brain development and neuronal activity in larval zebrafish.

Journal: iScience

Status: code on request, 1 dataset cited

[27570] doi:10.1016/j.nbd.2024.106539 [paper, repository]

MRI-derived brain iron, grey matter volume, and risk of dementia and Parkinson's disease: Observational and genetic analysis in the UK Biobank cohort.

Journal: Neurobiology of disease

Authors' code: n-mounier/MRlap (GPL-2.0)

Status: code verified, 11 files readable, 3 matches

[27571] doi:10.1038/s41467-024-48146-y [paper, repository]

A modular framework for multi-scale tissue imaging and neuronal segmentation.

Journal: Nature communications

Authors' code: cauzzo-s5/SENPAI (GPL-3.0), sourceforge.net/neurogps-tree (no license)

Status: code verified, 10 files readable, 6 matches

[27572] doi:10.1038/s41467-024-48153-z [paper, repository]

Integrating human endogenous retroviruses into transcriptome-wide association studies highlights novel risk factors for major psychiatric conditions.

Journal: Nature communications

Authors' code: opain/Calculating-FUSION-TWAS-weights-pipeline (GPL-3.0), rodrigoduarte88/TWAS_HERVs-SCZ (CC0-1.0), rodrigoduarte88.github.io/neuro_rtwas (no license)

Status: code verified, 14 files readable

[27573] doi:10.1038/s41467-024-48338-6 [paper, repository]

Localized and global representation of prior value, sensory evidence, and choice in male mouse cerebral cortex.

Journal: Nature communications

Authors' code: funamizu-lab/Ishizu_et_al_2023 (no license), Zenodo 10881334 (CC-BY-4.0)

Status: code verified, 286 files readable, 3 matches

[27574] doi:10.1038/s41467-024-48367-1 [paper, repository]

Hippocampal sharp-wave ripples correlate with periods of naturally occurring self-generated thoughts in humans.

Journal: Nature communications

Authors' code: figshare 22815746 (CC-BY-4.0)

Status: code verified, 5 files readable, 4 matches

[27575] doi:10.1038/s41586-024-07440-x [paper, repository]

Distinct µ-opioid ensembles trigger positive and negative fentanyl reinforcement.

Journal: Nature

Authors' code: Zenodo 10890957 (CC-BY-4.0), Zenodo 8359491 (CC-BY-4.0)

Status: code verified

[27576] doi:10.1038/s41586-024-07451-8 [paper, repository]

Mapping model units to visual neurons reveals population code for social behaviour.

Journal: Nature

Authors' code: murthylab/one2one-mapping (GPL-3.0), sleap.ai (no license), murthylab/MurthyLab_FlySongSegmenter (no license)

Status: code verified, 73 files readable, 22 matches

[27577] doi:10.1038/s41587-024-02245-9 [paper, repository]

Mapping medically relevant RNA isoform diversity in the aged human frontal cortex with deep long-read RNA-seq.

Journal: Nature biotechnology

Authors' code: Zenodo 8180677 (CC-BY-4.0), UK-SBCoA-EbbertLab/brain_cDNA_discovery (MIT)

Status: code verified, 134 files readable, 2 matches

[27578] doi:10.1038/s41597-024-03346-5 [paper, repository]

BRAIN - Holocene archaeo-data for assessing plant-cultural diversity in Italy and other Mediterranean regions.

Journal: Scientific data

Authors' code: doi:10.6084/m9.figshare.c.7029929.v1 (no license)

Status: dead link

[27579] doi:10.1038/s41598-024-61798-6 [paper, repository]

A deep learning model for brain segmentation across pediatric and adult populations.

Journal: Scientific reports

Authors' code: icometrix/gmm-augmentation (MIT)

Status: code verified, 4 files readable, 1 match

[27580] doi:10.1038/s41598-024-62621-y [paper, data]

Repeated diagnostic ultrasound exposure modifies the structural properties of CA1 dendrites and alters the hippocampal transcriptome.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27581] doi:10.1073/pnas.2316117121 [paper, repository]

Characteristic BOLD signals are detectable in white matter of the spinal cord at rest and after a stimulus.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 25425862 (CC-BY-4.0)

Status: empty repository

[27582] doi:10.1080/19420889.2024.2357346 [paper, data]

Phytochemical constituents analysis in <i>laminaria digitata</i> for Alzheimer's disease: molecular docking and in-silico toxicity approach.

Journal: Communicative & integrative biology

Status: data only, 1 dataset cited

[27583] doi:10.1242/dev.202252 [paper, data]

Fetal brain response to maternal inflammation requires microglia.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[27584] doi:10.1371/journal.pone.0293781 [paper, repository]

Investigating the neural effects of typicality and predictability for face and object stimuli.

Journal: PloS one

Authors' code: OSF x5cyq (no license)

Status: empty repository

[27585] doi:10.1371/journal.pone.0300449 [paper, data]

An epidemiological study of season of birth, mental health, and neuroimaging in the UK Biobank.

Journal: PloS one

Status: data only, 1 dataset cited

[27586] doi:10.1371/journal.pone.0303086 [paper, data]

Neurophysiological, balance and motion evidence in adolescent idiopathic scoliosis: A systematic review.

Journal: PloS one

Status: data only, 1 dataset cited

[27587] doi:10.1523/jneurosci.0015-24.2024 [paper]

Exploratory Rearing Is Governed by Hypothalamic Melanin-Concentrating Hormone Neurons According to Locus Ceruleus.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[27588] doi:10.3389/fncel.2024.1391556 [paper, data]

Characteristics of quiescent adult neural stem cells induced by the bFGF/BMP4 combination or BMP4 alone <i>in vitro</i>.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[27589] doi:10.3389/fnmol.2024.1389100 [paper, data]

Adolescent binge ethanol impacts H3K9me3-occupancy at synaptic genes and the regulation of oligodendrocyte development.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[27590] doi:10.3389/fnmol.2024.1389816 [paper, repository]

Spiral ganglion neuron degeneration in aminoglycoside-deafened rats involves innate and adaptive immune responses not requiring complement.

Journal: Frontiers in molecular neuroscience

Authors' code: bgansemer/ABR-analysis (no license), alexdobin/STAR (MIT)

Status: code verified, 341 files readable, 2 matches

[27591] doi:10.3389/fphar.2024.1364138 [paper, data]

System biology approach to identify the novel biomarkers in glioblastoma multiforme tumors by using computational analysis.

Journal: Frontiers in pharmacology

Status: data only, 6 datasets cited

[27592] doi:10.3390/ijms25115616 [paper, repository]

Rabies Virus Infection Causes Pyroptosis of Neuronal Cells.

Journal: International journal of molecular sciences

Authors' code: genome.jp/kegg (no license)

Status: code verified

[27593] doi:10.3390/ijms25115647 [paper, data]

Systems Genome: Coordinated Gene Activity Networks, Recurring Coordination Modules, and Genome Homeostasis in Developing Neurons.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[27594] doi:10.3390/s24113316 [paper, data]

Evaluation of EEG Signals by Spectral Peak Methods and Statistical Correlation for Mental State Discrimination Induced by Arithmetic Tasks.

Journal: Sensors (Basel, Switzerland)

Status: code on request, 1 dataset cited

[27595] doi:10.7717/peerj-cs.2056 [paper, repository]

Detection of mild cognitive impairment based on attention mechanism and parallel dilated convolution.

Journal: PeerJ. Computer science

Authors' code: adni.loni.usc.edu (no license), supp:PMC11157520/peerj-cs-10-2056-s001.zip (no license)

Status: code verified, 6 files readable, 2 matches

Tuesday, 21 May 2024 (43 papers)

[27596] doi:10.1007/s00018-024-05244-w [paper, repository]

Endothelial PDGF-D contributes to neurovascular protection after ischemic stroke by rescuing pericyte functions.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: Zenodo 10839501 (CC-BY-4.0), elalilab/supportingmaterial (MIT)

Status: code verified, 6 files readable, 1 match

[27597] doi:10.1007/s10654-024-01131-7 [paper]

Serum neurofilament light chain as a prognostic marker of all-cause mortality in a national sample of US adults.

Journal: European journal of epidemiology

Status: code on request

[27598] doi:10.1007/s11060-024-04702-6 [paper, repository]

Rapid DNA methylation-based classification of pediatric brain tumors from ultrasonic aspirate specimens.

Journal: Journal of neuro-oncology

Authors' code: pesk/nanoDx (GPL-3.0), pesk/nanoCUSA (no license)

Status: code verified, 35 files readable, 2 matches

[27599] doi:10.1016/j.celrep.2024.114026 [paper, repository]

Beyond the MUN domain, Munc13 controls priming and depriming of synaptic vesicles.

Journal: Cell reports

Authors' code: brungerlab/single_molecule_matlab_scripts (GPL-3.0)

Status: code verified, 21 files readable

[27600] doi:10.1016/j.isci.2024.110064 [paper, repository]

Decoding heterogeneous and coordinated tissue architecture in glioblastoma using spatial transcriptomics.

Journal: iScience

Authors' code: satijalab/seurat (other), ncbi.nlm.nih.gov/geo/info (no license)

Status: code verified, 136 files readable, 3 matches

[27601] doi:10.1016/j.isci.2024.110069 [paper]

Astrocytes sense glymphatic-level shear stress through the interaction of sphingosine-1-phosphate with Piezo1.

Journal: iScience

Status: code on request

[27602] doi:10.1016/j.omtm.2024.101269 [paper]

A blood-brain barrier-penetrant AAV gene therapy improves neurological function in symptomatic mucolipidosis IV mice.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[27603] doi:10.1016/j.xhgg.2024.100311 [paper, repository]

Critical reasoning on the co-expression module QTL in the dorsolateral prefrontal cortex.

Journal: HGG advances

Authors' code: accote45/module-QTL (no license)

Status: code verified, 17 files readable, 15 matches

[27604] doi:10.1038/s41419-024-06728-0 [paper, repository]

Foxo3 regulates cortical and medullary thymic epithelial cell homeostasis with implications in T cell development.

Journal: Cell death & disease

Authors' code: ebi.ac.uk/ena (no license)

Status: code verified

[27605] doi:10.1038/s41467-024-47481-4 [paper, data]

Ventral tegmental area dopamine projections to the hippocampus trigger long-term potentiation and contextual learning.

Journal: Nature communications

Status: data only, 1 dataset cited

[27606] doi:10.1038/s41467-024-48302-4 [paper, repository]

Spatiotemporal brain hierarchies of auditory memory recognition and predictive coding.

Journal: Nature communications

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0), Zenodo 10701724 (CC-BY-4.0), Zenodo 11072410 (CC-BY-4.0), leonardob92/spatiotemporalbrainhierarchiesauditorymemoryrecognitionpredictivecoding_naturecommunications (no license)

Status: code verified, 344 files readable, 40 matches

[27607] doi:10.1038/s41467-024-48341-x [paper, repository]

Self-organization of modular activity in immature cortical networks.

Journal: Nature communications

Authors' code: SmithNeuroLab/uniform_opto (MIT), Zenodo 10892426 (CC-BY-4.0)

Status: code verified, 10 files readable, 2 matches

[27608] doi:10.1038/s41467-024-48342-w [paper]

Graded decisions in the human brain.

Journal: Nature communications

Status: code on request

[27609] doi:10.1038/s41467-024-48730-2 [paper, data]

Astrocytic ALKBH5 in stress response contributes to depressive-like behaviors in mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[27610] doi:10.1038/s41514-024-00150-8 [paper]

Investigating nutrient biomarkers of healthy brain aging: a multimodal brain imaging study.

Journal: npj aging

Status: code on request

[27611] doi:10.1038/s41531-024-00679-1 [paper, data]

Neither alpha-synuclein fibril strain nor host murine genotype influences seeding efficacy.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[27612] doi:10.1038/s41593-024-01648-w [paper, repository]

Orexin neurons track temporal features of blood glucose in behaving mice.

Journal: Nature neuroscience

Authors' code: Pauvis/HON-Gluocse (MIT)

Status: code verified, 8 files readable, 1 match

[27613] doi:10.1038/s41593-024-01650-2 [paper, repository]

LINE-1 retrotransposons contribute to mouse PV interneuron development.

Journal: Nature neuroscience

Authors' code: gist.github.com/331e1780975969afcebc2996ddb8c7a2 (no license)

Status: code verified, 1 file readable

[27614] doi:10.1038/s41598-024-62422-3 [paper, data]

Neural mechanisms of costly helping in the general population and mirror-pain synesthetes.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27615] doi:10.1038/s41598-024-62534-w [paper, data]

Chronic ingestion of soy peptide supplementation reduces aggressive behavior and abnormal fear memory caused by juvenile social isolation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27616] doi:10.1038/s42003-024-06315-1 [paper, repository]

Spatially resolved cell atlas of the teleost telencephalon and deep homology of the vertebrate forebrain.

Journal: Communications biology

Authors' code: ggruenhagen3/cichlid_st (no license), Zenodo 8364925 (other-open)

Status: code verified, 76 files readable, 10 matches

[27617] doi:10.1038/s42003-024-06316-0 [paper, repository]

Belief inference for hierarchical hidden states in spatial navigation.

Journal: Communications biology

Authors' code: RisaKatayama/article-belief-hierarchical-spatial (MIT)

Status: code verified, 11 files readable, 1 match

[27618] doi:10.1073/pnas.2316176121 [paper, data]

Construction of human 3D striato-nigral assembloids to recapitulate medium spiny neuronal projection defects in Huntington's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27619] doi:10.1073/pnas.2318859121 [paper, data]

Cryo-EM structures elucidate the multiligand receptor nature of megalin.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 30 datasets cited

[27620] doi:10.1093/braincomms/fcae175 [paper, repository]

Cross-modal plasticity in children with cochlear implant: converging evidence from EEG and functional near-infrared spectroscopy.

Journal: Brain communications

Authors' code: OSF zqynm (no license)

Status: code verified, 5 files readable, 9 matches

[27621] doi:10.1107/s1600577524002923 [paper, data]

Laminography as a tool for imaging large-size samples with high resolution.

Journal: Journal of synchrotron radiation

Status: data only, 1 dataset cited

[27622] doi:10.1128/jb.00087-24 [paper, data]

Group B <i>Streptococcus</i> transcriptome when interacting with brain endothelial cells.

Journal: Journal of bacteriology

Status: data only, 1 dataset cited

[27623] doi:10.1177/0271678x241255599 [paper, data]

Evolution of brain injury and neurological dysfunction after cardiac arrest in the rat - A multimodal and comprehensive model.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: data only, 2 datasets cited

[27624] doi:10.1186/s12880-024-01285-6 [paper, data]

Refining neural network algorithms for accurate brain tumor classification in MRI imagery.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[27625] doi:10.1186/s12885-024-12345-z [paper, data]

mRNA markers for survival prediction in glioblastoma multiforme patients: a systematic review with bioinformatic analyses.

Journal: BMC cancer

Status: data only, 1 dataset cited

[27626] doi:10.1186/s13063-024-08168-9 [paper]

High-precision stereotactic irradiation for focal drug-resistant epilepsy versus standard treatment: a randomized waitlist-controlled trial (the PRECISION trial).

Journal: Trials

Status: code on request

[27627] doi:10.1186/s13195-024-01471-2 [paper, repository]

Experimental colitis in young Tg2576 mice accelerates the onset of an Alzheimer's-like clinical phenotype.

Journal: Alzheimer's research & therapy

Authors' code: leandrod94/papers (no license)

Status: code verified, 99 files readable, 8 matches

[27628] doi:10.1186/s40644-024-00709-4 [paper, repository]

MR-based radiomics predictive modelling of EGFR mutation and HER2 overexpression in metastatic brain adenocarcinoma: a two-centre study.

Journal: Cancer imaging : the official publication of the International Cancer Imaging Society

Authors' code: Radiomics/pyradiomics (BSD-3-Clause)

Status: code verified, 60 files readable, 2 matches

[27629] doi:10.1371/journal.pone.0303278 [paper, repository]

Explainability of three-dimensional convolutional neural networks for functional magnetic resonance imaging of Alzheimer's disease classification based on gradient-weighted class activation mapping.

Journal: PloS one

Authors' code: Neutrino000/3D-VGG-ADNI (MIT)

Status: code verified, 9 files readable

[27630] doi:10.1371/journal.pone.0303822 [paper, repository]

Uncertainty quantification and sensitivity analysis of neuron models with ion concentration dynamics.

Journal: PloS one

Authors' code: CINPLA/edNEGmodel (MIT), letiziasignorelli/edNEGmodel_UQSA (MIT), Zenodo 10775265 (CC-BY-4.0)

Status: code verified, 45 files readable, 7 matches

[27631] doi:10.1371/journal.pone.0303843 [paper, repository]

Single trial Bayesian inference by population vector readout in the barn owl's sound localization system.

Journal: PloS one

Authors' code: brian-fischer/Single-Trial-Bayesian-Inference (no license)

Status: code verified, 2 files readable, 4 matches

[27632] doi:10.18632/aging.205836 [paper]

miR-101a-3p/ROCK2 axis regulates neuronal injury in Parkinson's disease models.

Journal: Aging

Status: data only

[27633] doi:10.2147/ijn.s455492 [paper, data]

Polydopamine-Coated Kaempferol-Loaded MOF Nanoparticles: A Novel Therapeutic Strategy for Postoperative Neurocognitive Disorder.

Journal: International journal of nanomedicine

Status: data only, 1 dataset cited

[27634] doi:10.2147/jir.s460161 [paper, data]

Role of Inflammation in the Development of COVID-19 to Parkinson's Disease.

Journal: Journal of inflammation research

Status: data only, 1 dataset cited

[27635] doi:10.3389/fnagi.2024.1401109 [paper, data]

Increased hippocampal epigenetic age in the Ts65Dn mouse model of Down Syndrome.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[27636] doi:10.3389/fnbeh.2024.1399716 [paper, repository]

Not seeing the forest for the trees: combination of path integration and landmark cues in human virtual navigation.

Journal: Frontiers in behavioral neuroscience

Authors' code: pub.uni-bielefeld.de/record/2982046 (no license), gitlab.ub.uni-bielefeld.de/jonas.scherer/not_seeing_the_forest_for_the_trees_combination_of_path_integration_and_landmark_cues_in_human_virtual_navigation (CC-BY-4.0), gitlab.ub.uni-bielefeld.de/virtual_navigation_tools/unity_vnt_showcase_triangle_completion (no license)

Status: code verified, 69 files readable, 11 matches

[27637] doi:10.3389/fnut.2024.1351067 [paper, repository]

The relationship between coffee-related factors and cortical and hippocampal structure: a triangulation of evidence approach and Mendelian randomization research.

Journal: Frontiers in nutrition

Authors' code: Ruosining/PhenoScanner-Results-Processor (no license)

Status: dead link

[27638] doi:10.3390/nu16111544 [paper]

The Tryptophan Index Is Associated with Risk of Ischemic Stroke: A Community-Based Nested Case-Control Study.

Journal: Nutrients

Status: code on request

Monday, 20 May 2024 (43 papers)

[27639] doi:10.1002/ece3.11039 [paper, repository]

Identifying microbial drivers in biological phenotypes with a Bayesian network regression model.

Journal: Ecology and evolution

Authors' code: solislemuslab/BayesianNetworkRegression.jl (GPL-2.0), samozm/bayesian_network_regression_imp (GPL-2.0), solislemuslab/soil-microbiome-nn (no license)

Status: code verified, 331 files readable, 7 matches

[27640] doi:10.1007/s00221-024-06844-5 [paper, repository]

Differences in the organization of the primary motor cortex in people with and without low back pain and associations with motor control and sensory tests.

Journal: Experimental brain research

Authors' code: marlow17/surfaceanalysis (GPL-3.0)

Status: code verified, 20 files readable

[27641] doi:10.1007/s00422-024-00991-2 [paper, repository]

A computational neural model that incorporates both intrinsic dynamics and sensory feedback in the Aplysia feeding network.

Journal: Biological cybernetics

Authors' code: CMU-BORG/C3NS-IRG3-Simulink-Modular-Model (MIT), Zenodo 10228820 (CC-BY-4.0)

Status: code verified, 34 files readable, 2 matches

[27642] doi:10.1007/s10565-024-09869-2 [paper, data]

SIRT1 restores mitochondrial structure and function in rats by activating SIRT3 after cerebral ischemia/reperfusion injury.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[27643] doi:10.1007/s12021-024-09658-6 [paper, repository]

Where Top-Down Meets Bottom-Up: Cell-Type Specific Connectivity Map of the Whisker System.

Journal: Neuroinformatics

Authors' code: DepartmentofNeurophysiology/NeuralNet-ABC (MIT)

Status: code verified, 71 files readable

[27644] doi:10.1016/j.celrep.2024.114252 [paper]

Phosphatidic acid-dependent recruitment of microtubule motors to spherical supported lipid bilayers for in vitro motility assays.

Journal: Cell reports

Status: code on request

[27645] doi:10.1016/j.ebiom.2024.105161 [paper, data]

Akt and AMPK activators rescue hyperexcitability in neurons from patients with bipolar disorder.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[27646] doi:10.1016/j.xgen.2024.100563 [paper]

Lineage-specific splicing regulation of MAPT gene in the primate brain.

Journal: Cell genomics

Status: code on request

[27647] doi:10.1038/s41386-024-01880-9 [paper, repository]

Temporal dissociation between local and global functional adaptations of the maternal brain to childbirth: a longitudinal assessment.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: Zenodo 6884932 (other-nc), leondlotter/juspyce (CC-BY-NC-SA-4.0)

Status: code verified, 36 files readable

[27648] doi:10.1038/s41467-024-48015-8 [paper, repository]

Information-based TMS to mid-lateral prefrontal cortex disrupts action goals during emotional processing.

Journal: Nature communications

Authors' code: OSF 3tjsg (no license)

Status: code verified, 20 files readable, 5 matches

[27649] doi:10.1038/s41467-024-48369-z [paper, data]

Sex-specific developmental gene expression atlas unveils dimorphic gene networks in C. elegans.

Journal: Nature communications

Status: data only, 1 dataset cited

[27650] doi:10.1038/s41467-024-48547-z [paper, repository]

Heuristics in risky decision-making relate to preferential representation of information.

Journal: Nature communications

Authors' code: Zenodo 10950132 (CC-BY-4.0), evanrussek/meg_heuristics_risk_preferential_information (no license)

Status: code verified, 44 files readable, 3 matches

[27651] doi:10.1038/s41593-024-01636-0 [paper, repository]

Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry.

Journal: Nature neuroscience

Authors' code: jbryois/scrna_disease (no license), LieberInstitute/10xPilot_snRNAseq-human (Artistic-2.0), Zenodo 7777821 (CC-BY-4.0), LieberInstitute/aanri_phase1 (no license), Zenodo 8403712 (CC-BY-4.0)

Status: code verified, 1,532 files readable, 19 matches

[27652] doi:10.1038/s41597-024-03330-z [paper, repository]

A large and diverse brain organoid dataset of 1,400 cross-laboratory images of 64 trackable brain organoids.

Journal: Scientific data

Authors' code: LabTrivedi/MOrgAna (MIT), Zenodo 10568828 (CC-BY-4.0)

Status: code verified, 186 files readable, 3 matches

[27653] doi:10.1038/s41598-024-62004-3 [paper, repository]

Evolutionary trends in the elasmobranch neurocranium.

Journal: Scientific reports

Authors' code: figshare 25388581 (CC-BY-4.0)

Status: code verified, 1 file readable

[27654] doi:10.1038/s41598-024-62070-7 [paper]

Social context modulates multibrain broadband dynamics and functional brain-to-brain coupling in the group of mice.

Journal: Scientific reports

Status: code on request

[27655] doi:10.1038/s41598-024-62135-7 [paper, repository]

Movement trajectories as a window into the dynamics of emerging neural representations.

Journal: Scientific reports

Authors' code: mahiluthra/mousetracking_experiment (no license)

Status: code verified, 9 files readable

[27656] doi:10.1038/s41598-024-62230-9 [paper, repository]

Feasibility of decoding covert speech in ECoG with a Transformer trained on overt speech.

Journal: Scientific reports

Authors' code: ttlabtuat/ECoG2Speech (no license)

Status: code verified, 22 files readable, 4 matches

[27657] doi:10.1038/s41746-024-01065-0 [paper, repository]

Self-supervised learning of accelerometer data provides new insights for sleep and its association with mortality.

Journal: NPJ digital medicine

Authors' code: OxWearables/asleep (other)

Status: code verified, 27 files readable

[27658] doi:10.1038/s42003-024-06242-1 [paper, data]

Detecting the effect of genetic diversity on brain composition in an Alzheimer's disease mouse model.

Journal: Communications biology

Status: data only, 1 dataset cited

[27659] doi:10.1073/pnas.2316149121 [paper, repository]

Subthalamic nucleus-language network connectivity predicts dopaminergic modulation of speech function in Parkinson's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: scsnl/Cai_PD_Dopamine_STN_Language_RSFC_2023 (no license)

Status: code verified, 15 files readable

[27660] doi:10.1080/2162402x.2024.2356942 [paper]

HIF2A mediates lineage transition to aggressive phenotype of cancer-associated fibroblasts in lung cancer brain metastasis.

Journal: Oncoimmunology

Status: code on request

[27661] doi:10.1093/narcan/zcae021 [paper]

<i>FBXO42</i> activity is required to prevent mitotic arrest, spindle assembly checkpoint activation and lethality in glioblastoma and other cancers.

Journal: NAR cancer

Status: data only

[27662] doi:10.1111/acel.14201 [paper, data]

Centenarian hippocampus displays high levels of astrocytic metallothioneins.

Journal: Aging cell

Status: data only, 1 dataset cited

[27663] doi:10.1162/imag_a_00154 [paper, data]

Few sex differences in regional gray matter volume growth trajectories across early childhood.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request, 1 dataset cited

[27664] doi:10.1162/imag_a_00155 [paper, repository]

Exploring an EM-algorithm for banded regression in computational neuroscience.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: safugl/embanded (MIT)

Status: code verified, 48 files readable, 4 matches

[27665] doi:10.1162/imag_a_00169 [paper, repository]

Intrinsic functional connectivity among memory networks does not predict individual differences in narrative recall.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: memobc/paper-CamCanIDs (no license)

Status: code verified, 68 files readable, 12 matches

[27666] doi:10.1162/imag_a_00173 [paper, repository]

Concurrent maintenance of both veridical and transformed working memory representations within unique coding schemes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 3hdpc (no license), mijowolff/veridical-and-transformed-representations-in-wm (no license)

Status: code verified, 87 files readable, 6 matches

[27667] doi:10.1162/imag_a_00174 [paper]

Assessment of the macrovascular contribution to resting-state fMRI functional connectivity at 3 Tesla.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[27668] doi:10.1162/imag_a_00175 [paper, repository]

Precision brain morphometry using cluster scanning.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: maxwellelliott/cluster-pooling (no license)

Status: code verified, 2 files readable, 1 match

[27669] doi:10.1162/imag_a_00177 [paper, repository]

Unconstrained quantitative magnetization transfer imaging: Disentangling T &lt;sub&gt;1&lt;/sub&gt; of the free and semi-solid spin pools.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: JakobAsslaender/MRIgeneralizedBloch.jl (MIT), jakobasslaender.github.io/mrigeneralizedbloch.jl (no license), JakobAsslaender/MRFingerprintingRecon.jl (MIT), Zenodo 7433494 (other-open)

Status: code verified, 130 files readable, 4 matches

[27670] doi:10.1162/imag_a_00179 [paper, repository]

Simultaneous whole-head electrophysiological recordings using EEG and OPM-MEG.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ZSeedat/EEG_OPMMEG_HealthyAdultStudy_YoungEpilepsy (GPL-3.0)

Status: code verified, 13 files readable, 5 matches

[27671] doi:10.1162/imag_a_00181 [paper, repository]

Idiosyncratic patterns of interhemispheric connectivity in the face and scene networks of the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF w6dmx (no license)

Status: dead link

[27672] doi:10.1186/s13054-024-04951-x [paper, data]

Targeted temperature control following traumatic brain injury: ESICM/NACCS best practice consensus recommendations.

Journal: Critical care (London, England)

Status: data only, 1 dataset cited

[27673] doi:10.1212/wnl.0000000000209430 [paper]

Seizure Outcome After Intraoperative Electrocorticography-Tailored Epilepsy Surgery: A Systematic Review and Meta-Analysis.

Journal: Neurology

Status: code on request

[27674] doi:10.1242/dev.202640 [paper, repository]

Cell coupling compensates for changes in single-cell Her6 dynamics and provides phenotypic robustness.

Journal: Development (Cambridge, England)

Authors' code: TMinchington/tRecs (no license), Papalopulu-Lab/Doostdar2023 (no license)

Status: code verified, 2,039 files readable, 18 matches

[27675] doi:10.1371/journal.pbio.3002358 [paper, data]

Simple visual stimuli are sufficient to drive responses in action observation and execution neurons in macaque ventral premotor cortex.

Journal: PLoS biology

Status: data only, 2 datasets cited

[27676] doi:10.1371/journal.pcbi.1012075 [paper, repository]

Versatile multiple object tracking in sparse 2D/3D videos via deformable image registration.

Journal: PLoS computational biology

Authors' code: venkatachalamlab/ZephIR (MIT)

Status: code verified, 116 files readable, 10 matches

[27677] doi:10.1371/journal.pone.0292501 [paper, repository]

Augmenting complex and dynamic performance through mindfulness-based cognitive training: An evaluation of training adherence, trait mindfulness, personality and resting-state EEG.

Journal: PloS one

Authors' code: OSF y9hvt (no license)

Status: code verified, 2 files readable, 7 matches

[27678] doi:10.3389/fneur.2024.1389731 [paper, data]

Single-channel seizure detection with clinical confirmation of seizure locations using CHB-MIT dataset.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[27679] doi:10.3389/fnins.2024.1386801 [paper, data]

Rapidly repeated visual stimulation induces long-term potentiation of VEPs and increased content of membrane AMPA and NMDA receptors in the V1 cortex of cats.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[27680] doi:10.3389/fpsyt.2024.1397093 [paper, data]

Explaining deep learning-based representations of resting state functional connectivity data: focusing on interpreting nonlinear patterns in autism spectrum disorder.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[27681] doi:10.3390/e26050432 [paper, data]

Revisiting the Characterization of Resting Brain Dynamics with the Permutation Jensen-Shannon Distance.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

Sunday, 19 May 2024 (3 papers)

[27682] doi:10.1002/alz.13861 [paper, repository]

Sleep functional connectivity, hyperexcitability, and cognition in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: LamLab-MGH/SleepFC (no license)

Status: code verified, 8 files readable, 18 matches

[27683] doi:10.1016/j.bas.2024.102835 [paper, repository]

Advanced neuromonitoring powered by ICM+ and its place in the Brand New AI World, reflections at the 20th anniversary boundary.

Journal: Brain & spine

Authors' code: CMataczynski/ICMPWaveformClassificationPlugin (GPL-3.0)

Status: code verified, 9 files readable

[27684] doi:10.1016/j.isci.2024.110034 [paper]

The influence of psilocybin on subconscious and conscious emotional learning.

Journal: iScience

Status: code on request

Saturday, 18 May 2024 (11 papers)

[27685] doi:10.1016/j.isci.2024.109985 [paper, data]

Mapping the emotional homunculus with fMRI.

Journal: iScience

Status: data only, 1 dataset cited

[27686] doi:10.1038/s41398-024-02915-x [paper]

The circulating proteome and brain health: Mendelian randomisation and cross-sectional analyses.

Journal: Translational psychiatry

Status: code on request

[27687] doi:10.1038/s41467-024-48340-y [paper, repository]

Ventral pallidum GABA and glutamate neurons drive approach and avoidance through distinct modulation of VTA cell types.

Journal: Nature communications

Authors' code: lauren-faget/VPtoVTA_FP (no license)

Status: code verified, 5 files readable

[27688] doi:10.1038/s41467-024-48393-z [paper, repository]

Photoacoustic Tomography with Temporal Encoding Reconstruction (PATTERN) for cross-modal individual analysis of the whole brain.

Journal: Nature communications

Authors' code: CaA2318777/PATTERN (no license)

Status: code verified, 5 files readable, 1 match

[27689] doi:10.1038/s41531-024-00715-0 [paper]

Upregulated ECM genes and increased synaptic activity in Parkinson's human DA neurons with PINK1/ PRKN mutations.

Journal: NPJ Parkinson's disease

Status: code on request

[27690] doi:10.1038/s41531-024-00717-y [paper, repository]

Microstructure predicts non-motor outcomes following deep brain stimulation in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: dicemt/DTI-NODDI (AGPL-3.0)

Status: code verified, 5 files readable

[27691] doi:10.1038/s41598-024-62051-w [paper, repository]

New insights into the effects of type and timing of childhood maltreatment on brain morphometry.

Journal: Scientific reports

Authors' code: OSF u98va (no license)

Status: code verified

[27692] doi:10.1038/s42003-024-06294-3 [paper, repository]

Fast, accurate, and interpretable decoding of electrocorticographic signals using dynamic mode decomposition.

Journal: Communications biology

Authors' code: yanagisawa-lab/fast-accurate-and-interpretable-decoding-of-electrocorticographic-signals-using-DMD (no license)

Status: code verified, 10 files readable, 4 matches

[27693] doi:10.1186/s40478-024-01790-3 [paper, data]

A longer time to relapse is associated with a larger increase in differences between paired primary and recurrent IDH wild-type glioblastomas at both the transcriptomic and genomic levels.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[27694] doi:10.3390/cancers16101924 [paper, repository]

Neuropilin2 in Mesenchymal Stromal Cells as a Potential Novel Therapeutic Target in Myelofibrosis.

Journal: Cancers

Authors' code: anshupas/VosbeckEtal2024 (no license)

Status: code verified, 3 files readable, 5 matches

[27695] doi:10.3390/cells13100873 [paper, data]

Modification of Gas6 Protein in the Brain by a Functional Endogenous Tissue Vitamin K Cycle.

Journal: Cells

Status: data only, 1 dataset cited

Friday, 17 May 2024 (21 papers)

[27696] doi:10.1007/s00259-024-06759-x [paper, repository]

Assessment of cerebral drug occupancy in humans using a single PET-scan: A [&lt;sup&gt;11&lt;/sup&gt;C]UCB-J PET study.

Journal: European journal of nuclear medicine and molecular imaging

Authors' code: Gjertrud/ISI (no license)

Status: code verified, 4 files readable, 2 matches

[27697] doi:10.1016/j.celrep.2024.114218 [paper]

Metabolic regulation of single synaptic vesicle exo- and endocytosis in hippocampal synapses.

Journal: Cell reports

Status: code on request

[27698] doi:10.1016/j.celrep.2024.114257 [paper, repository]

Compensation between FOXP transcription factors maintains proper striatal function.

Journal: Cell reports

Authors' code: konopkalab/foxp-striatal-compensation (no license), Zenodo 11094304 (CC-BY-4.0), chris-mcginnis-ucsf/DoubletFinder (no license), macs3-project/MACS (BSD-3-Clause), RGLab/MAST (no license)

Status: code verified, 404 files readable, 7 matches

[27699] doi:10.1016/j.csbj.2024.05.019 [paper, repository]

A multi-omic single-cell landscape of cellular diversification in the developing human cerebral cortex.

Journal: Computational and structural biotechnology journal

Authors' code: YuhanTian/corticalDevelopment (no license)

Status: code verified, 66 files readable, 33 matches

[27700] doi:10.1016/j.jbc.2024.107382 [paper, data]

Transient kinetics reveal the mechanism of competitive inhibition of the neutral amino acid transporter ASCT2.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[27701] doi:10.1038/s41467-024-48375-1 [paper, repository]

Cingulate microstimulation induces negative decision-making via reduced top-down influence on primate fronto-cingulo-striatal network.

Journal: Nature communications

Authors' code: kenamemori/natcommun24 (no license)

Status: code verified, 2 files readable

[27702] doi:10.1038/s41467-024-48392-0 [paper, repository]

Mapping recurrent mosaic copy number variation in human neurons.

Journal: Nature communications

Authors' code: 10XGenomics/longranger (MIT), mills-lab/Scoval (MIT)

Status: code verified, 395 files readable

[27703] doi:10.1038/s41591-024-02969-w [paper, repository]

A prognostic neural epigenetic signature in high-grade glioma.

Journal: Nature medicine

Authors' code: imsb-uke/epigenetic-neural-glioblastoma (MIT), heilandd/GBNeural (no license), danasilv/Deconvolution_of_GBM_bulk_DNA_methylation_profiles (no license)

Status: code verified, 26 files readable, 14 matches

[27704] doi:10.1038/s42003-024-06273-8 [paper, repository]

Supervised latent factor modeling isolates cell-type-specific transcriptomic modules that underlie Alzheimer's disease progression.

Journal: Communications biology

Authors' code: Zenodo 10962415 (CC-BY-4.0), dblabs-mcgill-mila/snRNA-AD_latent_modules (MIT)

Status: code verified, 10 files readable, 12 matches

[27705] doi:10.1080/23744235.2024.2345712 [paper, data]

Biomarkers and genotypes in patients with Central nervous system infection caused by enterovirus.

Journal: Infectious diseases (London, England)

Status: data only, 1 dataset cited

[27706] doi:10.1111/acel.14177 [paper, repository]

Aging-associated decrease of PGC-1α promotes pain chronification.

Journal: Aging cell

Authors' code: harnett/Shiqiananalysis (no license)

Status: dead link

[27707] doi:10.1111/pcn.13675 [paper, repository]

Impact of a mindfulness-based intervention on neurobehavioral functioning and its association with large-scale brain networks in preterm young adolescents.

Journal: Psychiatry and clinical neurosciences

Authors' code: c4science.ch/source/icaps (no license)

Status: code found, still to be checked

[27708] doi:10.1126/sciadv.adm9326 [paper, data]

KAT6A deficiency impairs cognitive functions through suppressing RSPO2/Wnt signaling in hippocampal CA3.

Journal: Science advances

Status: data only, 1 dataset cited

[27709] doi:10.1162/imag_a_00186 [paper, repository]

Practical considerations for birefringence microscopy of myelin structure: Microscope design and tissue processing for effective imaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: alexgray103/BRMscope (no license)

Status: code verified, 42 files readable, 4 matches

[27710] doi:10.1186/s12880-024-01297-2 [paper, repository]

MRI reconstruction with enhanced self-similarity using graph convolutional network.

Journal: BMC medical imaging

Authors' code: Qiaoyu-K/GCESS-MRI-master (no license)

Status: code verified, 8 files readable

[27711] doi:10.1186/s13059-024-03250-6 [paper, data]

Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci.

Journal: Genome biology

Status: data only, 1 dataset cited

[27712] doi:10.1371/journal.pone.0300128 [paper, data]

Alpha interbrain synchrony during mediated interpersonal touch.

Journal: PloS one

Status: data only, 1 dataset cited

[27713] doi:10.3389/fnhum.2024.1398065 [paper, repository]

Decoding imagined speech with delay differential analysis.

Journal: Frontiers in human neuroscience

Authors' code: OSF d7m3n (no license)

Status: code verified, 20 files readable, 6 matches

[27714] doi:10.3389/fnmol.2024.1394058 [paper, data]

Dolutegravir induces FOLR1 expression during brain organoid development.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[27715] doi:10.3390/polym16101426 [paper, data]

Comparison of Printable Biomaterials for Use in Neural Tissue Engineering: An In Vitro Characterization and In Vivo Biocompatibility Assessment.

Journal: Polymers

Status: data only, 1 dataset cited

[27716] doi:10.7554/elife.88782 [paper, data]

FMRP regulates postnatal neuronal migration via MAP1B.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 16 May 2024 (33 papers)

[27717] doi:10.1007/s00429-024-02806-3 [paper, data]

A strong direct link from the layer 3/4 border to layer 6 of cat primary visual cortex.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[27718] doi:10.1016/j.isci.2024.109972 [paper]

Expression of GAD2 in excitatory neurons projecting from the ventrolateral periaqueductal gray to the locus coeruleus.

Journal: iScience

Status: code on request

[27719] doi:10.1016/j.isci.2024.109988 [paper, repository]

Integrative neurovascular coupling and neurotransmitter analyses in anisometropic and visual deprivation amblyopia children.

Journal: iScience

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable, 1 match

[27720] doi:10.1016/j.isci.2024.110006 [paper, data]

Microglial apolipoprotein E particles contribute to neuronal senescence and synaptotoxicity.

Journal: iScience

Status: code on request, 1 dataset cited

[27721] doi:10.1016/j.neuron.2024.04.020 [paper, data]

Distinct feedforward and feedback pathways for cell-type specific attention effects.

Journal: Neuron

Status: data only, 2 datasets cited

[27722] doi:10.1016/j.neuroscience.2024.05.017 [paper, data]

Brain Expression Levels of Commonly Measured Blood Biomarkers of Neurological Damage Differ with Respect to Sex, Race, and Age.

Journal: Neuroscience

Status: data only, 1 dataset cited

[27723] doi:10.1016/j.redox.2024.103197 [paper, data]

Nobiletin regulates intracellular Ca²⁺ levels via IP₃R and ameliorates neuroinflammation in Aβ42-induced astrocytes.

Journal: Redox biology

Status: data only, 1 dataset cited

[27724] doi:10.1016/j.xcrm.2024.101566 [paper, repository]

Bidirectional regulation of levodopa-induced dyskinesia by a specific neural ensemble in globus pallidus external segment.

Journal: Cell reports. Medicine

Authors' code: zhoupc/CNMF_E (GPL-3.0)

Status: code verified, 266 files readable, 4 matches

[27725] doi:10.1038/s41380-024-02592-8 [paper]

Sex differences in trajectories of cortical development in autistic children from 2-13 years of age.

Journal: Molecular psychiatry

Status: code on request

[27726] doi:10.1038/s41467-024-48489-6 [paper, repository]

Optogenetic activation of dorsal raphe serotonin neurons induces brain-wide activation.

Journal: Nature communications

Authors' code: Taiyou/OptofMRI_5HT (no license), Zenodo 10956557 (CC-BY-4.0)

Status: code verified, 158 files readable, 12 matches

[27727] doi:10.1038/s41467-024-48505-9 [paper, repository]

Magnetic voluntary head-fixation in transgenic rats enables lifespan imaging of hippocampal neurons.

Journal: Nature communications

Authors' code: dylan2106/Magnetic-Voluntary-Head-fixation (other), dylan2106/two_photon_collection_cannula (GPL-3.0)

Status: code verified, 50 files readable, 2 matches

[27728] doi:10.1038/s41467-024-48575-9 [paper, repository]

Zero-shot learning enables instant denoising and super-resolution in optical fluorescence microscopy.

Journal: Nature communications

Authors' code: tristazeng.github.io/zs-deconvnet-page (no license), TristaZeng/ZS-DeconvNet (no license), Zenodo 10991031 (CC-BY-4.0)

Status: code verified, 132 files readable, 6 matches

[27729] doi:10.1038/s41592-024-02266-x [paper, repository]

Spatial transition tensor of single cells.

Journal: Nature methods

Authors' code: cliffzhou92/stt (MIT), scvelo.readthedocs.io (no license)

Status: code verified, 40 files readable

[27730] doi:10.1038/s41593-024-01640-4 [paper, repository]

Hue selectivity from recurrent circuitry in Drosophila.

Journal: Nature neuroscience

Authors' code: rbehnialab/chreyesees (MIT)

Status: code verified, 33 files readable, 8 matches

[27731] doi:10.1038/s41598-024-61915-5 [paper, data]

A ResNet mini architecture for brain age prediction.

Journal: Scientific reports

Status: data only, 2 datasets cited

[27732] doi:10.1038/s42003-024-06267-6 [paper, repository]

The neurocomputational link between defensive cardiac states and approach-avoidance arbitration under threat.

Journal: Communications biology

Authors' code: can-lab/brainampconverter (GPL-3.0), can-lab/hera (GPL-3.0)

Status: code verified, 336 files readable, 8 matches

[27733] doi:10.1073/pnas.2319060121 [paper]

MACSPI enables tissue-selective proteomic and interactomic analyses in multicellular organisms.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[27734] doi:10.1073/pnas.2321496121 [paper, data]

Macrophage transplantation rescues RNASET2-deficient leukodystrophy by replacing deficient microglia in a zebrafish model.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27735] doi:10.1073/pnas.2406565121 [paper, repository]

A hyperpolarizing neuron recruits undocked innexin hemichannels to transmit neural information in &lt;i&gt;Caenorhabditis elegans&lt;/i&gt;.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ShunjiNakano/AIY_tracking (no license), sourceforge.net/mwt (no license), ikedamuneki/ThermotaxisAnalysis (no license)

Status: code verified, 30 files readable, 1 match

[27736] doi:10.1080/07853890.2024.2352603 [paper, data]

Accuracy of brain natriuretic peptide and N-terminal brain natriuretic peptide for detecting paediatric pulmonary hypertension: a systematic review and meta-analysis.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[27737] doi:10.1093/nc/niae021 [paper, repository]

Exploring effects of anesthesia on complexity, differentiation, and integrated information in rat EEG.

Journal: Neuroscience of consciousness

Authors' code: andresni/pyconscious (MIT), oizumi-lab/PhiToolbox (no license)

Status: code verified, 116 files readable, 4 matches

[27738] doi:10.1093/pnasnexus/pgae196 [paper, data]

D-ꞵ-hydroxybutyrate stabilizes hippocampal CA3-CA1 circuit during acute insulin resistance.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[27739] doi:10.1186/s12984-024-01371-4 [paper, data]

Enhancing touch sensibility with sensory electrical stimulation and sensory retraining.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[27740] doi:10.1242/jcs.262116 [paper, data]

Caskin2 is a novel talin- and Abi1-binding protein that promotes cell motility.

Journal: Journal of cell science

Status: data only, 1 dataset cited

[27741] doi:10.1371/journal.pbio.3002195 [paper, repository]

Acute stress during witnessing injustice shifts third-party interventions from punishing the perpetrator to helping the victim.

Journal: PLoS biology

Authors' code: OSF fkae9 (no license)

Status: code verified, 42 files readable, 5 matches

[27742] doi:10.1371/journal.pone.0247212 [paper, repository]

Functional classes of SNPs related to psychiatric disorders and behavioral traits contrast with those related to neurological disorders.

Journal: PloS one

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[27743] doi:10.1371/journal.pone.0298651 [paper, repository]

A predictor-informed multi-subject bayesian approach for dynamic functional connectivity.

Journal: PloS one

Authors' code: jayesrule/PIBDFC (MIT)

Status: code verified, 47 files readable, 4 matches

[27744] doi:10.1371/journal.pone.0301118 [paper, data]

Evaluation of microglia activation related markers following a clinical course of TBS: A non-human primate study.

Journal: PloS one

Status: data only, 1 dataset cited

[27745] doi:10.3389/fncom.2024.1240348 [paper, repository]

Information bottleneck-based Hebbian learning rule naturally ties working memory and synaptic updates.

Journal: Frontiers in computational neuroscience

Authors' code: darsnack/biological-hsic (MIT)

Status: code verified, 18 files readable

[27746] doi:10.3389/fninf.2024.1395916 [paper, repository]

Gershgorin circle theorem-based feature extraction for biomedical signal analysis.

Journal: Frontiers in neuroinformatics

Authors' code: sahaj432/Signal_GCFE (no license)

Status: code verified, 659 files readable

[27747] doi:10.3390/bioengineering11050497 [paper, repository]

Improving the Generalizability of Deep Learning for T2-Lesion Segmentation of Gliomas in the Post-Treatment Setting.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: LupoLab-UCSF/SpatialRegularization (no license)

Status: code verified, 5 files readable, 2 matches

[27748] doi:10.3390/ijms25105445 [paper]

Genome-Wide DNA Methylation in Early-Onset-Dementia Patients Brain Tissue and Lymphoblastoid Cell Lines.

Journal: International journal of molecular sciences

Status: data only

[27749] doi:10.3390/s24103168 [paper, data]

Optimal Channel Selection of Multiclass Motor Imagery Classification Based on Fusion Convolutional Neural Network with Attention Blocks.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Wednesday, 15 May 2024 (45 papers, 27 on this page)

[27750] doi:10.1002/acn3.52079 [paper, data]

Emerging variants, unique phenotypes, and transcriptomic signatures: an integrated study of COASY-associated diseases.

Journal: Annals of clinical and translational neurology

Status: data only, 2 datasets cited

[27751] doi:10.1002/mco2.568 [paper, data]

Neurotransmitter accumulation and Parkinson's disease-like phenotype caused by anion channelrhodopsin opto-controlled astrocytic mitochondrial depolarization in substantia nigra pars compacta.

Journal: MedComm

Status: data only, 1 dataset cited

[27752] doi:10.1007/s10803-024-06244-2 [paper, repository]

Accelerated Theta Burst Transcranial Magnetic Stimulation for Refractory Depression in Autism Spectrum Disorder.

Journal: Journal of autism and developmental disorders

Authors' code: cincibrainlab (no license)

Status: code verified

[27753] doi:10.1016/j.isci.2024.110003 [paper]

Interacting ventral temporal gradients of timescales and functional connectivity and their relationships to visual behavior.

Journal: iScience

Status: code on request

[27754] doi:10.1038/s41467-024-48024-7 [paper, repository]

Task-oriented machine learning surrogates for tipping points of agent-based models.

Journal: Nature communications

Authors' code: nicolasevangelou/agent_based (no license)

Status: code verified, 276 files readable, 5 matches

[27755] doi:10.1038/s41467-024-48046-1 [paper, repository]

MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer.

Journal: Nature communications

Authors' code: gruber-sciencelab/MAPP (Apache-2.0), Zenodo 10845501 (Apache-2.0)

Status: code verified, 512 files readable, 8 matches

[27756] doi:10.1038/s41467-024-48195-3 [paper, data]

Cell-mediated cytotoxicity within CSF and brain parenchyma in spinal muscular atrophy unaltered by nusinersen treatment.

Journal: Nature communications

Status: data only, 1 dataset cited

[27757] doi:10.1038/s41467-024-48292-3 [paper, data]

Interplay between Mg²⁺ and Ca²⁺ at multiple sites of the ryanodine receptor.

Journal: Nature communications

Status: code on request, 2 datasets cited

[27758] doi:10.1038/s41467-024-48422-x [paper, data]

Octyl itaconate enhances VSVΔ51 oncolytic virotherapy by multitarget inhibition of antiviral and inflammatory pathways.

Journal: Nature communications

Status: data only, 1 dataset cited

[27759] doi:10.1038/s41586-024-07349-5 [paper, data]

Temporal multiplexing of perception and memory codes in IT cortex.

Journal: Nature

Status: code on request, 2 datasets cited

[27760] doi:10.1038/s41586-024-07419-8 [paper, repository]

GLP-1-directed NMDA receptor antagonism for obesity treatment.

Journal: Nature

Authors' code: perslab/Petersen-Nature-2024 (no license)

Status: code verified, 8 files readable, 1 match

[27761] doi:10.1038/s41597-024-03350-9 [paper, repository]

A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation.

Journal: Scientific data

Authors' code: ecalabr/nnUNet_models (no license), fets-ai.github.io/front-end (no license)

Status: code verified, 1 file readable

[27762] doi:10.1038/s41597-024-03356-3 [paper, repository]

A longitudinal electrophysiological and behavior dataset for PD rat in response to deep brain stimulation.

Journal: Scientific data

Authors' code: doi:10.12751/g-node.lzvqb5 (no license)

Status: code verified

[27763] doi:10.1038/s41598-024-60781-5 [paper, repository]

Prediction of treatment response after stereotactic radiosurgery of brain metastasis using deep learning and radiomics on longitudinal MRI data.

Journal: Scientific reports

Authors' code: w-cho/mri_convgru (no license)

Status: code verified, 17 files readable, 3 matches

[27764] doi:10.1038/s41598-024-60932-8 [paper, repository]

Short-term meditation training alters brain activity and sympathetic responses at rest, but not during meditation.

Journal: Scientific reports

Authors' code: OSF 3y4nj (no license)

Status: empty repository

[27765] doi:10.1038/s41598-024-61989-1 [paper, data]

Decoding predicted musical notes from omitted stimulus potentials.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27766] doi:10.1038/s42003-024-06264-9 [paper, repository]

From pixels to connections: exploring in vitro neuron reconstruction software for network graph generation.

Journal: Communications biology

Authors' code: CentroEPiaggio/NEMO (GPL-2.0), cihanbilge/AutomatedTreeStructureExtraction (no license), DominikSchmidbauer/ExplantAnlayzer (no license)

Status: code verified, 81 files readable, 5 matches

[27767] doi:10.1038/s42003-024-06276-5 [paper, repository]

Vesicle and reaction-diffusion hybrid modeling with STEPS.

Journal: Communications biology

Authors' code: cns-oist/steps_validation (no license), cns-oist/steps (GPL-3.0), Zenodo 10910455 (CC-BY-4.0)

Status: code verified, 1,169 files readable, 11 matches

[27768] doi:10.1038/s44319-024-00154-1 [paper, data]

TrxT and dhd are dispensable for Drosophila brain development but essential for l(3)mbt brain tumour growth.

Journal: EMBO reports

Status: data only, 1 dataset cited

[27769] doi:10.1073/pnas.2316006121 [paper, data]

Synergistic induction of blood-brain barrier properties.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[27770] doi:10.1073/pnas.2321410121 [paper, repository]

Neuronal PAS domain 1 identifies a major subpopulation of wakefulness-promoting GABAergic neurons in the basal forebrain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 2ne8j (no license)

Status: code verified, 6 files readable, 2 matches

[27771] doi:10.1080/21678421.2024.2349924 [paper, data]

Implementation of the MiNDToolkit intervention for the management of behavioral symptoms in MND by healthcare professionals: a mixed-methods process evaluation.

Journal: Amyotrophic lateral sclerosis & frontotemporal degeneration

Status: data only, 1 dataset cited

[27772] doi:10.1093/narcan/zcae022 [paper, repository]

Neural-net-based cell deconvolution from DNA methylation reveals tumor microenvironment associated with cancer prognosis.

Journal: NAR cancer

Authors' code: yyoshiaki/MEnet (CC-BY-NC-4.0), cibersortx.stanford.edu/runcibersortx.php (no license), Zenodo 11085605 (CC-BY-4.0), yyoshiaki/MEnet_manuscript (no license), Zenodo 11085611 (CC-BY-4.0)

Status: code verified, 70 files readable, 12 matches

[27773] doi:10.1098/rsob.240018 [paper, repository]

CNTN4 modulates neural elongation through interplay with APP.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.7125279 (no license)

Status: code found, still to be checked

[27774] doi:10.1098/rsos.231536 [paper, data]

A qualitative analysis of an A&lt;i&gt;β&lt;/i&gt;-monomer model with inflammation processes for Alzheimer's disease.

Journal: Royal Society open science

Status: data only, 1 dataset cited

[27775] doi:10.1098/rsos.231541 [paper, data]

Short-term memory, attentional control and brain size in primates.

Journal: Royal Society open science

Status: data only, 4 datasets cited

[27776] doi:10.1101/2024.05.15.594341 [paper, data]

Rapid modulation of striatal cholinergic interneurons and dopamine release by satellite astrocytes

Journal: bioRxiv (preprint)

Status: data only, 4 datasets cited

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