Every paper, by date: page 125

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 125 of 200: 15 May 2024 to 6 May 2024.

Wednesday, 15 May 2024 (45 papers, 18 on this page)

[27777] doi:10.1101/gr.278576.123 [paper, repository]

Transcriptional programs mediating neuronal toxicity and altered glial-neuronal signaling in a <i>Drosophila</i> knock-in tauopathy model.

Journal: Genome research

Authors' code: bwh-bioinformatics-hub/Single-cell-RNA-seq-of-the-CRISPR-engineered-endogenous-tauopathy-model (MIT), Zenodo 22237380 (CC-BY-4.0), Zenodo 22237381 (CC-BY-4.0)

Status: code verified, 62 files readable, 7 matches

[27778] doi:10.1111/acel.14172 [paper, repository]

Exercise rejuvenates microglia and reverses T cell accumulation in the aged female mouse brain.

Journal: Aging cell

Authors' code: CNSGenomics/SingleCell-MicrogliaAging (no license)

Status: dead link

[27779] doi:10.1111/pcn.13676 [paper, data]

Short tandem repeat expansions in cortical layer-specific genes implicate in phenotypic severity and adaptability of autism spectrum disorder.

Journal: Psychiatry and clinical neurosciences

Status: data only, 8 datasets cited

[27780] doi:10.1186/s12880-024-01261-0 [paper, data]

Integrated approach of federated learning with transfer learning for classification and diagnosis of brain tumor.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[27781] doi:10.1186/s13024-024-00711-1 [paper, data]

Alzheimer blood biomarkers: practical guidelines for study design, sample collection, processing, biobanking, measurement and result reporting.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[27782] doi:10.1186/s13046-024-03064-1 [paper, data]

PAX6 promotes neuroendocrine phenotypes of prostate cancer via enhancing MET/STAT5A-mediated chromatin accessibility.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 2 datasets cited

[27783] doi:10.1186/s13293-024-00615-1 [paper, repository]

Modeling brain sex in the limbic system as phenotype for female-prevalent mental disorders.

Journal: Biology of sex differences

Authors' code: gloriamatte/Limbic_Model (no license)

Status: code verified, 3 files readable

[27784] doi:10.1371/journal.pone.0299380 [paper, data]

Investigating gene-environment interaction on attention in a double-hit model for Autism Spectrum Disorder.

Journal: PloS one

Status: data only, 1 dataset cited

[27785] doi:10.1523/eneuro.0396-23.2024 [paper, repository]

Topography and Ensemble Activity in the Auditory Cortex of a Mouse Model of Fragile X Syndrome.

Journal: eNeuro

Authors' code: HirtzLab/Imaging_auditory_cortex_fmr1_KO (GPL-3.0)

Status: code verified, 45 files readable, 8 matches

[27786] doi:10.1523/jneurosci.1907-23.2024 [paper, data]

Distinctive and Complementary Roles of Default Mode Network Subsystems in Semantic Cognition.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 3 datasets cited

[27787] doi:10.1523/jneurosci.2009-22.2024 [paper, repository]

Neural Representations of Observed Interpersonal Synchrony/Asynchrony in the Social Perception Network.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF s6phj (no license)

Status: code verified

[27788] doi:10.3389/fnins.2024.1387339 [paper, repository]

Bi-sigmoid spike-timing dependent plasticity learning rule for magnetic tunnel junction-based SNN.

Journal: Frontiers in neuroscience

Authors' code: salah-daddi-nounou/bindsnet (AGPL-3.0)

Status: code verified, 82 files readable, 2 matches

[27789] doi:10.3389/fnrgo.2024.1346791 [paper, data]

Advancing passive BCIs: a feasibility study of two temporal derivative features and effect size-based feature selection in continuous online EEG-based machine error detection.

Journal: Frontiers in neuroergonomics

Status: data only, 1 dataset cited

[27790] doi:10.3389/fpsyt.2024.1372106 [paper, data]

Depression proteomic profiling in adolescents with transcriptome analyses in independent cohorts.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[27791] doi:10.3390/brainsci14050502 [paper, repository]

A Computational Model for the Simulation of Prepulse Inhibition and Its Modulation by Cortical and Subcortical Units.

Journal: Brain sciences

Authors' code: ThiagoTakechi/PPIModel (MIT)

Status: code verified, 3 files readable, 4 matches

[27792] doi:10.3762/bjnano.15.47 [paper, data]

On the additive artificial intelligence-based discovery of nanoparticle neurodegenerative disease drug delivery systems.

Journal: Beilstein journal of nanotechnology

Status: data only, 1 dataset cited

[27793] doi:10.7554/elife.91136 [paper, repository]

Functional diversity of dopamine axons in prefrontal cortex during classical conditioning.

Journal: eLife

Authors' code: pharmedku/2024-elife-da-axon (no license)

Status: code verified, 1 file readable

[27794] doi:10.7554/elife.95694 [paper, repository]

Comment on 'Accumbens cholinergic interneurons dynamically promote dopamine release and enable motivation'.

Journal: eLife

Authors' code: TritschLab/Taniguchi-Melani-2024 (MIT)

Status: code verified, 120 files readable, 1 match

Tuesday, 14 May 2024 (31 papers)

[27795] doi:10.1016/j.ajhg.2024.04.015 [paper, repository]

Therapeutic validation of MMR-associated genetic modifiers in a human ex vivo model of Huntington disease.

Journal: American journal of human genetics

Authors' code: michaelflower.org (no license)

Status: code verified

[27796] doi:10.1016/j.cub.2024.04.043 [paper, repository]

Ultrastructural differences impact cilia shape and external exposure across cell classes in the visual cortex.

Journal: Current biology : CB

Authors' code: doi:10.5281/zenodo (no license), catmaid/CATMAID (GPL-3.0), CAVEconnectome/CAVEclient (MIT), google/neuroglancer (Apache-2.0), Zenodo 10951285 (CC-BY-4.0), AllenInstitute/pycilium (BSD-2-Clause), Zenodo 3710398 (Apache-2.0), sdorkenw/meshparty (Apache-2.0)

Status: code verified, 1,759 files readable, 3 matches

[27797] doi:10.1016/j.dcn.2024.101390 [paper]

Clarifying the longitudinal factor structure, temporal stability, and construct validity of Go/No-Go task-related neural activation across adolescence and young adulthood.

Journal: Developmental cognitive neuroscience

Status: code on request

[27798] doi:10.1016/j.isci.2024.109973 [paper]

Functional remodeling of presynaptic voltage-gated calcium channels in superficial layers of the dorsal horn during neuropathic pain.

Journal: iScience

Status: code on request

[27799] doi:10.1016/j.isci.2024.109977 [paper, repository]

Combining patient-lesion and big data approaches to reveal hippocampal contributions to spatial memory and navigation.

Journal: iScience

Authors' code: shqdata.z6.web.core.windows.net (no license)

Status: code found, still to be checked

[27800] doi:10.1016/j.xcrm.2024.101570 [paper]

SARS-CoV-2 infection exacerbates the cellular pathology of Parkinson's disease in human dopaminergic neurons and a mouse model.

Journal: Cell reports. Medicine

Status: code on request

[27801] doi:10.1038/s41380-024-02584-8 [paper, data]

Structural deviations of the posterior fossa and the cerebellum and their cognitive links in a neurodevelopmental deletion syndrome.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[27802] doi:10.1038/s41467-024-47677-8 [paper, repository]

Dynamin1 long- and short-tail isoforms exploit distinct recruitment and spatial patterns to form endocytic nanoclusters.

Journal: Nature communications

Authors' code: tristanwallis/smlm_clustering (no license), mjohn218/dynamin_model (GPL-3.0)

Status: code verified, 11 files readable, 2 matches

[27803] doi:10.1038/s41467-024-48008-7 [paper, repository]

De novo motor learning creates structure in neural activity that shapes adaptation.

Journal: Nature communications

Authors' code: JoannaChang/de_novo_learning_structure (MIT)

Status: code verified, 71 files readable, 15 matches

[27804] doi:10.1038/s41467-024-48374-2 [paper, repository]

Primacy of vision shapes behavioral strategies and neural substrates of spatial navigation in marmoset hippocampus.

Journal: Nature communications

Authors' code: DiegoPiza/3Dmarms (Unlicense), Zenodo 10816116 (CC-BY-4.0)

Status: code verified, 147 files readable, 12 matches

[27805] doi:10.1038/s41467-024-48452-5 [paper, data]

Three-dimensional liquid metal-based neuro-interfaces for human hippocampal organoids.

Journal: Nature communications

Status: data only, 1 dataset cited

[27806] doi:10.1038/s41591-024-02960-5 [paper, repository]

Dynamics of cognitive variability with age and its genetic underpinning in NIHR BioResource Genes and Cognition cohort participants.

Journal: Nature medicine

Authors' code: shafiqnoa/genes-and-cognition-phase-1 (no license)

Status: code verified, 12 files readable, 1 match

[27807] doi:10.1038/s41597-024-03295-z [paper, repository]

ReMIND: The Brain Resection Multimodal Imaging Database.

Journal: Scientific data

Authors' code: ReubenDo/pydeface-niftyreg (MIT), ReubenDo/ReMIND (MIT)

Status: code verified, 12 files readable

[27808] doi:10.1038/s41598-024-59705-0 [paper, repository]

Accelerated MRI reconstructions via variational network and feature domain learning.

Journal: Scientific reports

Authors' code: facebookresearch/fastMRI (no license)

Status: code verified

[27809] doi:10.1038/s41598-024-60280-7 [paper, repository]

A brain machine interface framework for exploring proactive control of smart environments.

Journal: Scientific reports

Authors' code: plan4act (no license), Zenodo 3685793 (MIT), sensorimotorgroupdpz/macaque (MIT)

Status: code verified, 12 files readable

[27810] doi:10.1038/s41598-024-61045-y [paper]

Investigating sensitivity to multi-domain prediction errors in chronic auditory phantom perception.

Journal: Scientific reports

Status: code on request

[27811] doi:10.1038/s41598-024-61844-3 [paper, repository]

Multi-omics integration of scRNA-seq time series data predicts new intervention points for Parkinson's disease.

Journal: Scientific reports

Authors' code: Zenodo 10391383 (CC-BY-4.0), Zenodo 10391382 (CC-BY-4.0), katarinamihajlovic/netscnmtf-2stepmining (no license)

Status: code verified, 75 files readable, 6 matches

[27812] doi:10.1093/pnasnexus/pgae166 [paper, repository]

Impact of the gut microbiome composition on social decision-making.

Journal: PNAS nexus

Authors' code: OSF nk2mb (no license), OSF t36b5 (no license)

Status: code verified, 2 files readable, 3 matches

[27813] doi:10.1101/2024.05.12.593763 [paper, data]

Temporal prediction captures key differences between spiking excitatory and inhibitory V1 neurons

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[27814] doi:10.1177/0271678x241254718 [paper, repository]

Refined movement analysis in the staircase test reveals differential motor deficits in mouse models of stroke.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: ChariteExpMri/antx2 (LGPL-2.1), Wenger-Lab/MouseReach (no license)

Status: code verified, 2,056 files readable, 9 matches

[27815] doi:10.1177/19375867241251832 [paper, repository]

Nature-Based Design in Stroke Rehabilitation Environments: A Scoping Review.

Journal: HERD

Authors' code: OSF b9pck (no license)

Status: empty repository

[27816] doi:10.1371/journal.pbio.3002614 [paper, repository]

Spiking activity in the visual thalamus is coupled to pupil dynamics across temporal scales.

Journal: PLoS biology

Authors' code: doi:10.12751/g-node.ls6w8h (no license)

Status: code verified

[27817] doi:10.1371/journal.pcbi.1012110 [paper, repository]

Learning with filopodia and spines: Complementary strong and weak competition lead to specialized, graded, and protected receptive fields.

Journal: PLoS computational biology

Authors' code: albesagonzalez/filopodium-spine-learning (no license)

Status: code verified, 10 files readable, 3 matches

[27818] doi:10.1371/journal.pone.0302236 [paper, repository]

A hybrid CNN-SVM model for enhanced autism diagnosis.

Journal: PloS one

Authors' code: jackykyu/A-hybrid-CNN-SVM-model-for-enhanced-autism-diagnosis (MIT)

Status: code verified, 10 files readable, 4 matches

[27819] doi:10.1371/journal.pone.0303059 [paper, repository]

Development of rhesus macaque astrocyte cell lines supporting infection with a panel of viruses.

Journal: PloS one

Authors' code: TSun-tech/2023_Reiter_etal (no license)

Status: code verified, 2 files readable

[27820] doi:10.1371/journal.pone.0303146 [paper, data]

Spatio-temporal electroencephalographic power distribution in experimental pigs receiving propofol.

Journal: PloS one

Status: data only, 1 dataset cited

[27821] doi:10.1371/journal.pone.0303515 [paper, repository]

Spatial variations in the osteocyte lacuno-canalicular network density and analysis of the connectomic parameters.

Journal: PloS one

Authors' code: refelix/tina (MIT)

Status: code verified, 116 files readable, 1 match

[27822] doi:10.17179/excli2024-7151 [paper, repository]

Integrating fNIRS and machine learning: shedding light on Parkinson's disease detection.

Journal: EXCLI journal

Authors' code: GabrielSolana29/rs_fNIRS_PD (MIT)

Status: code verified, 10 files readable, 6 matches

[27823] doi:10.3389/fnins.2024.1393196 [paper, data]

Differential transcriptional profiles of vagal sensory neurons in female and male mice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[27824] doi:10.3758/s13423-024-02520-5 [paper, repository]

The neural implausibility of the diffusion decision model doesn't matter for cognitive psychometrics, but the Ornstein-Uhlenbeck model is better.

Journal: Psychonomic bulletin & review

Authors' code: Jiashun97/IDM (no license), Jiashun97/IDM.This (no license)

Status: code verified, 40 files readable, 2 matches

[27825] doi:10.7554/elife.91316 [paper, data]

Neuron-specific RNA-sequencing reveals different responses in peripheral neurons after nerve injury.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 13 May 2024 (33 papers)

[27826] doi:10.1007/s00406-024-01821-z [paper]

Characterization of cognitive symptoms in post COVID-19 patients.

Journal: European archives of psychiatry and clinical neuroscience

Status: code on request

[27827] doi:10.1007/s00429-024-02773-9 [paper, repository]

Comparing mouse and human cingulate cortex organization using functional connectivity.

Journal: Brain structure & function

Authors' code: neuroecology/allen-tracer-download (CC-BY-NC-ND-4.0), grandjeanlab/MouseMRIPrep (no license), grandjeanlab/MultiRat (Apache-2.0)

Status: code verified, 48 files readable, 7 matches

[27828] doi:10.1016/j.bbi.2024.05.014 [paper, repository]

Examining longitudinal associations between prenatal exposure to infections and child brain morphology.

Journal: Brain, behavior, and immunity

Authors' code: ajsuleri/Prenatal_infection_child_brain_development (GPL-3.0)

Status: code verified, 5 files readable, 10 matches

[27829] doi:10.1016/j.crmeth.2024.100777 [paper]

Effective cryopreservation of human brain tissue and neural organoids.

Journal: Cell reports methods

Status: code on request

[27830] doi:10.1016/j.csbj.2024.05.003 [paper, repository]

3D clustering of gene expression data from systemic autoinflammatory diseases using self-organizing maps (Clust3D).

Journal: Computational and structural biotechnology journal

Authors' code: Orepap/Clust3D (GPL-3.0)

Status: code verified, 11 files readable, 3 matches

[27831] doi:10.1016/j.redox.2024.103190 [paper, data]

JWA binding to NCOA4 alleviates degeneration in dopaminergic neurons through suppression of ferritinophagy in Parkinson's disease.

Journal: Redox biology

Status: data only, 1 dataset cited

[27832] doi:10.1016/j.xcrm.2024.101533 [paper, data]

Targeting the HSP47-collagen axis inhibits brain metastasis by reversing M2 microglial polarization and restoring anti-tumor immunity.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[27833] doi:10.1016/j.xcrm.2024.101559 [paper, data]

The adipose-neural axis is involved in epicardial adipose tissue-related cardiac arrhythmias.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[27834] doi:10.1016/j.xcrm.2024.101561 [paper, repository]

Clinical and CSF single-cell profiling of post-COVID-19 cognitive impairment.

Journal: Cell reports. Medicine

Authors' code: Zenodo 10962998 (CC-BY-4.0), MaGIC-Analytics/Hu_scRNA_COVID (no license)

Status: code verified, 4 files readable, 2 matches

[27835] doi:10.1021/acs.jcim.3c01060 [paper, repository]

Improving Anticancer Drug Selection and Prioritization via Neural Learning to Rank.

Journal: Journal of chemical information and modeling

Authors' code: ninglab/DrugRanker (no license)

Status: code verified, 33 files readable, 2 matches

[27836] doi:10.1038/s41467-024-48379-x [paper, repository]

Nonuniform and pathway-specific laminar processing of spatial frequencies in the primary visual cortex of primates.

Journal: Nature communications

Authors' code: BNUTW2023/PSLPSFV1 (no license), Zenodo 10890515 (CC-BY-4.0)

Status: code verified

[27837] doi:10.1038/s41562-024-01867-y [paper, repository]

Representation of internal speech by single neurons in human supramarginal gyrus.

Journal: Nature human behaviour

Authors' code: Zenodo 10697024 (CC-BY-4.0)

Status: code verified

[27838] doi:10.1038/s41593-024-01638-y [paper, repository]

Brain clearance is reduced during sleep and anesthesia.

Journal: Nature neuroscience

Authors' code: figshare 25483339 (CC-BY-4.0)

Status: code verified, 1 file readable, 1 match

[27839] doi:10.1038/s41593-024-01643-1 [paper, repository]

Cognitive representations of intracranial self-stimulation of midbrain dopamine neurons depend on stimulation frequency.

Journal: Nature neuroscience

Authors' code: philjrdb/ERTsimulation (no license)

Status: code verified, 12 files readable

[27840] doi:10.1080/19336934.2024.2352938 [paper, data]

A novel <i>adipose</i> loss-of-function mutant in <i>Drosophila</i>.

Journal: Fly

Status: data only, 1 dataset cited

[27841] doi:10.1093/braincomms/fcae164 [paper, repository]

The cortical neurophysiological signature of amyotrophic lateral sclerosis.

Journal: Brain communications

Authors' code: Zenodo 6875060 (BSD-3-Clause)

Status: code verified, 72 files readable, 5 matches

[27842] doi:10.1093/braincomms/fcae165 [paper, repository]

Utility of intracranial EEG networks depends on re-referencing and connectivity choice.

Journal: Brain communications

Authors' code: penn-cnt/CNT_Preprocessing_Toolkit (no license)

Status: code verified, 124 files readable, 11 matches

[27843] doi:10.1136/bmjsit-2023-000234 [paper, repository]

Theory and evidence-base for a digital platform for the delivery of language tests during awake craniotomy and collaborative brain mapping.

Journal: BMJ surgery, interventions, & health technologies

Authors' code: OSF su9xm (no license), OSF x4wsc (no license)

Status: empty repository

[27844] doi:10.1186/s12868-024-00867-y [paper, repository]

Characterizing dysregulations via cell-cell communications in Alzheimer's brains using single-cell transcriptomes.

Journal: BMC neuroscience

Authors' code: dssikdar/C2Cv0 (no license)

Status: code verified, 52 files readable, 4 matches

[27845] doi:10.1371/journal.pcbi.1011869 [paper, repository]

Topological state-space estimation of functional human brain networks.

Journal: PLoS computational biology

Authors' code: laplcebeltrami/PH-STAT (no license)

Status: code verified, 60 files readable, 11 matches

[27846] doi:10.1371/journal.pcbi.1012043 [paper, repository]

The tuning of tuning: How adaptation influences single cell information transfer.

Journal: PLoS computational biology

Authors' code: DepartmentofNeurophysiology/Analysis-tools-for-electrophysiological-somatosensory-cortex-databank (no license)

Status: code verified, 9 files readable, 4 matches

[27847] doi:10.1371/journal.pcbi.1012130 [paper, repository]

Network representation of multicellular activity in pancreatic islets: Technical considerations for functional connectivity analysis.

Journal: PLoS computational biology

Authors' code: MarkoSterk/beta_cell_analysis_suite (MIT)

Status: code verified, 28 files readable, 1 match

[27848] doi:10.1371/journal.pone.0291279 [paper, data]

A multifaceted suite of metrics for comparative myoelectric prosthesis controller research.

Journal: PloS one

Status: data only, 1 dataset cited

[27849] doi:10.1371/journal.pone.0299925 [paper, repository]

Non-Cartesian 3D-SPARKLING vs Cartesian 3D-EPI encoding schemes for functional Magnetic Resonance Imaging at 7 Tesla.

Journal: PloS one

Authors' code: Zaineb18/code_plosone (no license)

Status: code verified, 8 files readable, 2 matches

[27850] doi:10.26508/lsa.202402598 [paper, data]

Inflammatory risk contributes to post-COVID endothelial dysfunction through anti-ACKR1 autoantibody.

Journal: Life science alliance

Status: data only, 1 dataset cited

[27851] doi:10.3389/fendo.2024.1390203 [paper, repository]

Characterization of oxytocin and vasopressin receptors in the Southern giant pouched rat and comparison to other rodents.

Journal: Frontiers in endocrinology

Authors' code: OSF 6t3cw (no license)

Status: code verified, 4 files readable, 5 matches

[27852] doi:10.3389/fnins.2024.1383181 [paper, data]

Standard rodent diets differentially impact alcohol consumption, preference, and gut microbiome diversity.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[27853] doi:10.3390/brainsci14050493 [paper, repository]

Movement Termination of Slow-Wave Sleep-A Potential Biomarker?

Journal: Brain sciences

Authors' code: Zenodo 10956609 (CC-BY-4.0)

Status: empty repository

[27854] doi:10.3390/cells13100830 [paper, data]

Effects of the Dual FAAH/MAGL Inhibitor AKU-005 on Trigeminal Hyperalgesia in Male Rats.

Journal: Cells

Status: data only, 1 dataset cited

[27855] doi:10.4103/nrr.nrr-d-23-01477 [paper, repository]

Enhancing m6A modification in the motor cortex facilitates corticospinal tract remodeling after spinal cord injury.

Journal: Neural regeneration research

Authors' code: bioconductor.org/packages/release (no license)

Status: code verified

[27856] doi:10.4103/nrr.nrr-d-23-01871 [paper, data]

Dip2a regulates stress susceptibility in the basolateral amygdala.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[27857] doi:10.7554/elife.88514 [paper, repository]

Inferring control objectives in a virtual balancing task in humans and monkeys.

Journal: eLife

Authors' code: doi:10.5061/dryad.p2ngf1vzt (no license)

Status: code verified

[27858] doi:10.7717/peerj-cs.2031 [paper, repository]

Detecting Parkinson's disease from shoe-mounted accelerometer sensors using convolutional neural networks optimized with modified metaheuristics.

Journal: PeerJ. Computer science

Authors' code: supp:PMC11157549/peerj-cs-10-2031-s001.zip (no license)

Status: code verified, 8 files readable, 6 matches

Sunday, 12 May 2024 (2 papers)

[27859] doi:10.1002/alz.13828 [paper, data]

Characterizing molecular and synaptic signatures in mouse models of late-onset Alzheimer's disease independent of amyloid and tau pathology.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[27860] doi:10.1186/s13578-024-01240-6 [paper, data]

Multifunctional roles of γ-enolase in the central nervous system: more than a neuronal marker.

Journal: Cell & bioscience

Status: data only, 5 datasets cited

Saturday, 11 May 2024 (10 papers)

[27861] doi:10.1016/j.dcn.2024.101389 [paper, repository]

Associations between behavioral and self-reported impulsivity, brain structure, and genetic influences in middle childhood.

Journal: Developmental cognitive neuroscience

Authors' code: gitlab.partners.org/jk1330/abcd_impulsivity (no license)

Status: code found, still to be checked

[27862] doi:10.1016/j.isci.2024.109967 [paper, data]

Defining cis-regulatory elements and transcription factors that control human cortical interneuron development.

Journal: iScience

Status: code on request, 1 dataset cited

[27863] doi:10.1016/j.xpro.2024.103003 [paper]

Protocol to correlate electron microscopy with electrophysiology in single-cell autaptic microcultures.

Journal: STAR protocols

Status: code on request

[27864] doi:10.1016/j.xpro.2024.103063 [paper, repository]

Protocol for neuron tracing and analysis of dendritic structures from noisy microscopy images using Neuronalyzer.

Journal: STAR protocols

Authors' code: omer1yuval1/neuronalyzer (GPL-3.0), Zenodo 10938078 (CC-BY-4.0)

Status: code verified, 260 files readable, 4 matches

[27865] doi:10.1186/s12880-024-01292-7 [paper, data]

Enhancing brain tumor detection in MRI images through explainable AI using Grad-CAM with Resnet 50.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[27866] doi:10.1186/s12967-024-05268-7 [paper, repository]

Transcript and protein signatures derived from shared molecular interactions across cancers are associated with mortality.

Journal: Journal of translational medicine

Authors' code: SDTC-CPMed/shMCTM_cancer_mortality (no license)

Status: code verified, 5 files readable, 8 matches

[27867] doi:10.3390/brainsci14050487 [paper, data]

Beyond Frequency Bands: Complementary-Ensemble-Empirical-Mode-Decomposition-Enhanced Microstate Sequence Non-Randomness Analysis for Aiding Diagnosis and Cognitive Prediction of Dementia.

Journal: Brain sciences

Status: data only, 1 dataset cited

[27868] doi:10.3390/diagnostics14100997 [paper]

IMPA-Net: Interpretable Multi-Part Attention Network for Trustworthy Brain Tumor Classification from MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: code on request

[27869] doi:10.3390/genes15050615 [paper, repository]

Identification of a Novel Indel Variant in the <i>DARS2</i> Gene in Russian Patients with Leukoencephalopathy with Brainstem and Spinal Cord Involvement and Lactate Elevation.

Journal: Genes

Authors' code: Illumina/manta (GPL-3.0), dellytools/delly (BSD-3-Clause)

Status: code verified, 363 files readable, 1 match

[27870] doi:10.7150/ijbs.93445 [paper, data]

Activation of Neurotoxic Astrocytes Due to Mitochondrial Dysfunction Triggered by &lt;i&gt;POLG&lt;/i&gt; Mutation.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

Friday, 10 May 2024 (20 papers)

[27871] doi:10.1016/j.clinph.2024.05.002 [paper, repository]

Resting state electroencephalographic brain activity in neonates can predict age and is indicative of neurodevelopmental outcome.

Journal: Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology

Authors' code: Zenodo 10993300 (CC-BY-4.0), amirans65/brainagemodel (MIT)

Status: code verified, 26 files readable, 3 matches

[27872] doi:10.1016/j.heliyon.2024.e31121 [paper, data]

Role of mitochondrial dysfunction in acute traumatic brain injury: Evidence from bioinformatics analysis.

Journal: Heliyon

Status: data only, 1 dataset cited

[27873] doi:10.1038/s41467-023-43253-8 [paper, data]

Consensus-building conversation leads to neural alignment.

Journal: Nature communications

Status: data only, 1 dataset cited

[27874] doi:10.1038/s41467-024-48048-z [paper, repository]

Sex affects transcriptional associations with schizophrenia across the dorsolateral prefrontal cortex, hippocampus, and caudate nucleus.

Journal: Nature communications

Authors' code: broadinstitute/gtex-pipeline (BSD-3-Clause), LieberInstitute/sex_differences_sz (GPL-3.0), Zenodo 8410992 (other-open)

Status: code verified, 525 files readable, 30 matches

[27875] doi:10.1038/s41467-024-48329-7 [paper, repository]

Distributed representations of prediction error signals across the cortical hierarchy are synergistic.

Journal: Nature communications

Authors' code: robince/gcmi (GPL-3.0)

Status: code verified, 68 files readable

[27876] doi:10.1038/s41597-024-03337-6 [paper, repository]

SAROS: A dataset for whole-body region and organ segmentation in CT imaging.

Journal: Scientific data

Authors' code: umessen/saros-dataset (MIT)

Status: code verified, 10 files readable, 5 matches

[27877] doi:10.1038/s41598-024-60865-2 [paper, data]

Maternal gastrointestinal nematode infection alters hippocampal neuroimmunity, promotes synaptic plasticity, and improves resistance to direct infection in offspring.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27878] doi:10.1038/s41598-024-61515-3 [paper, data]

Identification of candidate biomarkers for GBM based on WGCNA.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27879] doi:10.1038/s41746-024-01115-7 [paper, repository]

Generalized sleep decoding with basal ganglia signals in multiple movement disorders.

Journal: NPJ digital medicine

Authors' code: dmlc/xgboost (Apache-2.0), microsoft/lightgbm (MIT), zixiao-yin/BGOOSE (other), OSF mt72e (no license)

Status: code verified, 1,373 files readable, 4 matches

[27880] doi:10.1126/sciadv.adj8571 [paper, data]

An edge-simplicity bias in the visual input to young infants.

Journal: Science advances

Status: data only, 2 datasets cited

[27881] doi:10.1162/imag_a_00165 [paper, repository]

Towards personalized precision functional mapping in infancy.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DCAN-Labs/compare_matrices_to_assign_networks (other), DCAN-Labs/infant-abcd-bids-pipeline (BSD-3-Clause), DCAN-Labs/abcd-bids-tfmri-pipeline (BSD-3-Clause), OSF csuyb (no license), Zenodo 7683282 (other-open)

Status: code verified, 141 files readable, 15 matches

[27882] doi:10.1162/imag_a_00167 [paper]

Neural mechanisms of the relationship between aerobic fitness and working memory in older adults: An fNIRS study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[27883] doi:10.1162/opmi_a_00143 [paper, repository]

Toward the Emergence of Intelligent Control: Episodic Generalization and Optimization.

Journal: Open mind : discoveries in cognitive science

Authors' code: tylergiallanza/EmergentIntelligentControl (no license)

Status: code verified, 7 files readable, 3 matches

[27884] doi:10.1186/s12979-024-00436-1 [paper, data]

Quercetin promotes the proportion and maturation of NK cells by binding to MYH9 and improves cognitive functions in aged mice.

Journal: Immunity & ageing : I & A

Status: data only, 1 dataset cited

[27885] doi:10.1503/jpn.230135 [paper, repository]

Effects of repetitive transcranial magnetic stimulation on individual variability of resting-state functional connectivity in major depressive disorder.

Journal: Journal of psychiatry & neuroscience : JPN

Authors' code: ThomasHMAC/THREE-D_Individual_Variability (no license)

Status: code verified, 3 files readable, 5 matches

[27886] doi:10.3389/fimmu.2024.1399989 [paper, data]

Retinal microglia express more MHC class I and promote greater T-cell-driven inflammation than brain microglia.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[27887] doi:10.3389/fnins.2024.1366761 [paper, repository]

Disrupted single-subject gray matter networks are associated with cognitive decline and cortical atrophy in Alzheimer's disease.

Journal: Frontiers in neuroscience

Authors' code: bettytijms/Single_Subject_Grey_Matter_Networks (MIT)

Status: code verified, 15 files readable, 1 match

[27888] doi:10.3389/frsle.2024.1349537 [paper, data]

Validation of spectral sleep scoring with polysomnography using forehead EEG device.

Journal: Frontiers in sleep

Status: data only, 1 dataset cited

[27889] doi:10.3390/genes15050609 [paper]

Altered Expression of PDE4 Genes in Schizophrenia: Insights from a Brain and Blood Sample Meta-Analysis and iPSC-Derived Neurons.

Journal: Genes

Status: data only

[27890] doi:10.7554/elife.88212 [paper, data]

Parallel processing of quickly and slowly mobilized reserve vesicles in hippocampal synapses.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 9 May 2024 (28 papers)

[27891] doi:10.1007/s00401-024-02733-x [paper, repository]

Physiological aging and inflammation-induced cellular senescence may contribute to oligodendroglial dysfunction in MS.

Journal: Acta neuropathologica

Authors' code: ctho1/dchiOL_aging (no license)

Status: code verified, 4 files readable, 5 matches

[27892] doi:10.1007/s11682-024-00886-7 [paper, repository]

Preoperative executive functioning impairments in patients with a meningioma: does a frontal location matter?

Journal: Brain imaging and behavior

Authors' code: cmictig.cs.ucl.ac.uk/wiki/index.php (no license), ETZ-TZO/visualize-cognitive-function (no license)

Status: code verified, 2 files readable

[27893] doi:10.1016/j.celrep.2024.114199 [paper, repository]

Ultraflexible electrodes for recording neural activity in the mouse spinal cord during motor behavior.

Journal: Cell reports

Authors' code: Zenodo 10982225 (CC-BY-4.0), yuwurice/spinal_net (no license)

Status: code verified, 202 files readable, 13 matches

[27894] doi:10.1016/j.isci.2024.109951 [paper, data]

Prioritized neural processing of social threats during perceptual decision-making.

Journal: iScience

Status: code on request, 1 dataset cited

[27895] doi:10.1016/j.jneumeth.2024.110160 [paper, data]

Simultaneous invasive and non-invasive recordings in humans: A novel Rosetta stone for deciphering brain activity.

Journal: Journal of neuroscience methods

Status: data only, 1 dataset cited

[27896] doi:10.1016/j.neuron.2024.04.015 [paper, repository]

A latent pool of neurons silenced by sensory-evoked inhibition can be recruited to enhance perception.

Journal: Neuron

Authors' code: llerussell/Naparm (no license)

Status: code verified, 80 files readable, 4 matches

[27897] doi:10.1016/j.xcrm.2024.101554 [paper, repository]

Lhx2 promotes axon regeneration of adult retinal ganglion cells and rescues neurodegeneration in mouse models of glaucoma.

Journal: Cell reports. Medicine

Authors' code: ngdc.cncb.ac.cn/gsa (no license)

Status: code verified

[27898] doi:10.1038/s41380-024-02576-8 [paper, repository]

Genetic regulation of human brain proteome reveals proteins implicated in psychiatric disorders.

Journal: Molecular psychiatry

Authors' code: marcelm/cutadapt (MIT), alexdobin/star (MIT), sourceforge.net/samtools (no license), deweylab/rsem (GPL-3.0), JUMPSuite/JUMP (no license), cran/coloc (no license), StoreyLab/qvalue (no license)

Status: code verified, 933 files readable, 8 matches

[27899] doi:10.1038/s41467-024-48053-2 [paper, repository]

Pervasive structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs.

Journal: Nature communications

Authors' code: ENCODE-DCC/rna-seq-pipeline (MIT), xieting0603/GBM (Apache-2.0), marianoimperatore/MeanFieldChromatin (no license), Zenodo 10829586 (no license), Zenodo 10830081 (CC-BY-4.0)

Status: code verified, 56 files readable, 10 matches

[27900] doi:10.1038/s41467-024-48337-7 [paper, repository]

Shared EEG correlates between non-REM parasomnia experiences and dreams.

Journal: Nature communications

Authors' code: jcataldi2/SleepWalking (no license)

Status: code verified, 3 files readable, 1 match

[27901] doi:10.1038/s41540-024-00376-y [paper, repository]

Alzheimer's disease rewires gene coexpression networks coupling different brain regions.

Journal: NPJ systems biology and applications

Authors' code: BIRDSgroup/InterTissueDC (LGPL-2.1)

Status: code verified, 22 files readable, 12 matches

[27902] doi:10.1038/s41587-024-02241-z [paper, repository]

Tracking single-cell evolution using clock-like chromatin accessibility loci.

Journal: Nature biotechnology

Authors' code: theislab/cellrank (BSD-3-Clause), caleblareau/mtscATACpaper_reproducibility (no license), GreenleafLab/MPAL-Single-Cell-2019 (no license), MagpiePKU/EpiTrace (GPL-3.0), epitrace.readthedocs.io (no license), OSF 8xd2p (no license)

Status: code verified, 205 files readable, 14 matches

[27903] doi:10.1038/s41598-024-60996-6 [paper, repository]

Diagnostic biomarker discovery from brain EEG data using LSTM, reservoir-SNN, and NeuCube methods in a pilot study comparing epilepsy and migraine.

Journal: Scientific reports

Authors' code: SSaeedinia/EEG-Classification-_Epilepsy-vs-Migraine (no license)

Status: code verified, 4 files readable, 3 matches

[27904] doi:10.1038/s42003-024-06203-8 [paper, repository]

Anti-Hebbian plasticity drives sequence learning in striatum.

Journal: Communications biology

Authors' code: Touboul-Lab/SequenceLearning (no license), Zenodo 3841377 (no license), figshare 25355848 (CC-BY-4.0), Zenodo 10794811 (CC-BY-4.0)

Status: code verified, 260 files readable, 1 match

[27905] doi:10.1117/1.nph.11.3.033408 [paper]

Encoding of self-initiated actions in axon terminals of the mesocortical pathway.

Journal: Neurophotonics

Status: code on request

[27906] doi:10.1159/000539135 [paper, data]

Beta Spectral Power during Passive Listening in Preschool Children with Specific Language Impairment.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[27907] doi:10.1162/imag_a_00160 [paper, repository]

The auditory P2 is influenced by pitch changes but not pitch strength and consists of two separate subcomponents.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF bnzmy (no license)

Status: code verified, 235 files readable, 5 matches

[27908] doi:10.1172/jci170813 [paper, data]

Peripherally targeted analgesia via AAV-mediated sensory neuron-specific inhibition of multiple pronociceptive sodium channels.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[27909] doi:10.1186/s13046-024-03058-z [paper]

LINC00606 promotes glioblastoma progression through sponge miR-486-3p and interaction with ATP11B.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only

[27910] doi:10.1242/dmm.050639 [paper, data]

Impaired polyamine metabolism causes behavioral and neuroanatomical defects in a mouse model of Snyder-Robinson syndrome.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[27911] doi:10.1523/eneuro.0545-23.2024 [paper, repository]

Auditory Encoding of Natural Speech at Subcortical and Cortical Levels Is Not Indicative of Cognitive Decline.

Journal: eNeuro

Authors' code: elbolt/subCortex-speech (MIT)

Status: code verified, 22 files readable, 13 matches

[27912] doi:10.3389/fnagi.2024.1382593 [paper, repository]

The pursuit for markers of disease progression in behavioral variant frontotemporal dementia: a scoping review to optimize outcome measures for clinical trials.

Journal: Frontiers in aging neuroscience

Authors' code: Zenodo 3582928 (CC-BY-NC-4.0)

Status: empty repository

[27913] doi:10.3389/fncel.2024.1320784 [paper, data]

Autism risk gene <i>Cul3</i> alters neuronal morphology via caspase-3 activity in mouse hippocampal neurons.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[27914] doi:10.3389/fneur.2024.1360273 [paper, repository]

Diffusion imaging markers of accelerated aging of the lower cingulum in subjective cognitive decline.

Journal: Frontiers in neurology

Authors' code: rf2485/camcan_scd_dMRI_paper (CC-BY-SA-4.0)

Status: code verified, 14 files readable, 4 matches

[27915] doi:10.3389/fnhum.2024.1324958 [paper, repository]

A simulation study: comparing independent component analysis and signal-space projection - source-informed reconstruction for rejecting muscle artifacts evoked by transcranial magnetic stimulation.

Journal: Frontiers in human neuroscience

Authors' code: tuomasmutanen/SSP-SIR_vs_ICA (CC-BY-NC-SA-4.0)

Status: empty repository, 2 files readable

[27916] doi:10.3389/fnmol.2024.1160435 [paper, data]

GnRH peripherally modulates nociceptor functions, exacerbating mechanical pain.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[27917] doi:10.3389/fnmol.2024.1381534 [paper, repository]

Mapping proteomic composition of excitatory postsynaptic sites in the cerebellar cortex.

Journal: Frontiers in molecular neuroscience

Authors' code: OSF w6c9u (no license)

Status: empty repository

[27918] doi:10.3390/genes15050604 [paper, data]

Molecular Regulation of Fetal Brain Development in Inbred and Congenic Mouse Strains Differing in Longevity.

Journal: Genes

Status: data only, 1 dataset cited

Wednesday, 8 May 2024 (28 papers)

[27919] doi:10.1002/nbm.5161 [paper]

High-resolution &lt;sup&gt;1&lt;/sup&gt;H-MRSI at 9.4 T by integrating relaxation enhancement and subspace imaging.

Journal: NMR in biomedicine

Status: code on request

[27920] doi:10.1007/s13365-024-01208-9 [paper, data]

Human endogenous retrovirus W in multiple sclerosis: transcriptional activity is associated with decline in oligodendrocyte proportions in the white matter of the brain.

Journal: Journal of neurovirology

Status: data only, 1 dataset cited

[27921] doi:10.1016/j.celrep.2024.114187 [paper]

Dopamine-sensitive neurons in the mesencephalic locomotor region control locomotion initiation, stop, and turns.

Journal: Cell reports

Status: code on request

[27922] doi:10.1016/j.isci.2024.109910 [paper, repository]

Male-specific behavioral and transcriptomic changes in aging &lt;i&gt;C. elegans&lt;/i&gt; neurons.

Journal: iScience

Authors' code: emc2cube/Bioinformatics (EUPL-1.2)

Status: code verified, 10 files readable, 1 match

[27923] doi:10.1038/s41467-024-47617-6 [paper, repository]

Spontaneous persistent activity and inactivity in vivo reveals differential cortico-entorhinal functional connectivity.

Journal: Nature communications

Authors' code: krishnizzle/Coupled_UDS_Networks (no license)

Status: code verified, 1 file readable, 2 matches

[27924] doi:10.1038/s41467-024-47683-w [paper, data]

Bacteroidota inhibit microglia clearance of amyloid-beta and promote plaque deposition in Alzheimer's disease mouse models.

Journal: Nature communications

Status: data only, 1 dataset cited

[27925] doi:10.1038/s41531-024-00698-y [paper, data]

Transcriptomic imputation of genetic risk variants uncovers novel whole-blood biomarkers of Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request, 1 dataset cited

[27926] doi:10.1038/s41598-024-58524-7 [paper, repository]

The impact of spike timing precision and spike emission reliability on decoding accuracy.

Journal: Scientific reports

Authors' code: modeldb:2015409 (no license)

Status: code verified

[27927] doi:10.1038/s41598-024-60664-9 [paper, data]

Periodic heat waves-induced neuronal etiology in the elderly is mediated by gut-liver-brain axis: a transcriptome profiling approach.

Journal: Scientific reports

Status: data only, 1 dataset cited

[27928] doi:10.1038/s42003-024-06228-z [paper, repository]

Distributed and dynamical communication: a mechanism for flexible cortico-cortical interactions and its functional roles in visual attention.

Journal: Communications biology

Authors' code: BrainDynamicsUSYD/Distributed_and_dynamical_communication (GPL-3.0), Zenodo 10959801 (CC-BY-4.0)

Status: code verified, 160 files readable, 30 matches

[27929] doi:10.1111/ene.16288 [paper, data]

Structural correlations between brain magnetic resonance image-derived phenotypes and retinal neuroanatomy.

Journal: European journal of neurology

Status: data only, 1 dataset cited

[27930] doi:10.1126/sciadv.adl1230 [paper, repository]

Flexible circumferential bioelectronics to enable 360-degree recording and stimulation of the spinal cord.

Journal: Science advances

Authors' code: Zenodo 10908887 (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[27931] doi:10.1162/imag_a_00153 [paper]

Effects of the spatial resolution of the Virtual Epileptic Patient on the identification of epileptogenic networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[27932] doi:10.1162/imag_a_00161 [paper, repository]

A thin line between conflict and reaction time effects on EEG and fMRI brain signals.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ewabeldzik/conflict_RT_effects (no license)

Status: code verified, 9 files readable, 6 matches

[27933] doi:10.1162/imag_a_00162 [paper, repository]

Relevance acquisition through motivational incentives: Modeling the time-course of associative learning and the role of visual features.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF cauxf (no license)

Status: empty repository

[27934] doi:10.1162/imag_a_00163 [paper, repository]

Ketosis regulates K&lt;sup&gt;+&lt;/sup&gt; ion channels, strengthening brain-wide signaling disrupted by age.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: lcneuro.org/data/eeg (no license)

Status: dead link

[27935] doi:10.1162/imag_a_00164 [paper, repository]

Identification of diffusion, kurtosis, and propagator MRI markers of Alzheimer's disease pathology in post-mortem human tissue.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Courtney-C/analysis-for-dMRI-in-PM-AD-paper (MIT)

Status: code verified, 7 files readable, 1 match

[27936] doi:10.1162/imag_a_00166 [paper, repository]

Thalamic nuclei segmentation from T1-weighted MRI: Unifying and benchmarking state-of-the-art methods.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: lunastra26/thalamic-nuclei-segmentation (MIT)

Status: code verified, 7 files readable, 6 matches

[27937] doi:10.1162/imag_a_00168 [paper, repository]

Role of the prefrontal cortex in musical and verbal short-term memory: A functional near-infrared spectroscopy study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jeremieginzburg/fNIRS_STM_adults (no license)

Status: code verified, 11 files readable, 2 matches

[27938] doi:10.1162/imag_a_00170 [paper, repository]

Through their eyes: Multi-subject brain decoding with simple alignment techniques.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: matteoferrante/cross-subject-decoding (no license)

Status: code verified, 11 files readable, 1 match

[27939] doi:10.1162/imag_a_00172 [paper]

Functional MR elastography measures visual cortex stiffening proportional to visual contrast intensity in regions of activation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[27940] doi:10.1186/s11689-024-09529-w [paper, repository]

Reduced lateralization of multiple functional brain networks in autistic males.

Journal: Journal of neurodevelopmental disorders

Authors' code: ThomasYeoLab/CBIG (MIT), Nielsen-Brain-and-Behavior-Lab/AutismHemisphericSpecialization2023 (MIT), cran.r-project.org/web/packages (no license)

Status: code verified, 2,029 files readable, 9 matches

[27941] doi:10.1186/s12887-024-04791-2 [paper, data]

Functional connectivity is linked to working memory differences in children with reading learning disability.

Journal: BMC pediatrics

Status: data only, 1 dataset cited

[27942] doi:10.1186/s12974-024-03093-9 [paper, repository]

Modelling lung infection with Klebsiella pneumoniae after murine traumatic brain injury.

Journal: Journal of neuroinflammation

Authors' code: mucosal-immunology-lab/microbiome-analysis (MIT)

Status: code verified, 8 files readable

[27943] doi:10.1371/journal.pbio.3002596 [paper, repository]

Loss of Katnal2 leads to ependymal ciliary hyperfunction and autism-related phenotypes in mice.

Journal: PLoS biology

Authors' code: sjleen/Cilia-stroke-analysis (no license)

Status: code verified, 2 files readable

[27944] doi:10.1523/jneurosci.1475-23.2024 [paper, data]

A Neural Decision Signal during Internal Sampling from Working Memory in Humans.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 2 datasets cited

[27945] doi:10.1523/jneurosci.1544-23.2024 [paper, data]

The Intellectual Disability Risk Gene &lt;i&gt;Kdm5b&lt;/i&gt; Regulates Long-Term Memory Consolidation in the Hippocampus.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[27946] doi:10.34133/cbsystems.0088 [paper, data]

Adaptive Spatial-Temporal Aware Graph Learning for EEG-Based Emotion Recognition.

Journal: Cyborg and bionic systems (Washington, D.C.)

Status: data only, 2 datasets cited

Tuesday, 7 May 2024 (31 papers)

[27947] doi:10.1002/alz.13821 [paper, repository]

Proteomic changes in the human cerebrovasculature in Alzheimer's disease and related tauopathies linked to peripheral biomarkers in plasma and cerebrospinal fluid.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: edammer/TAMPOR (MIT), edammer/parANOVA (MIT), edammer/TAMPOR29 (no license), edammer/MQ1pepAnnotate (MIT)

Status: code verified, 12 files readable, 13 matches

[27948] doi:10.1016/j.celrep.2024.114191 [paper, repository]

The mouse motor system contains multiple premotor areas and partially follows human organizational principles.

Journal: Cell reports

Authors' code: Zenodo 10912448 (CC-BY-4.0), git.fmrib.ox.ac.uk/preclinical-imaging/premotor-mouse-human (no license)

Status: code verified, 14 files readable, 2 matches

[27949] doi:10.1016/j.isci.2024.109917 [paper]

IGF2BP2-Shox2 axis regulates hippocampal-neuronal senescence to alleviate microgravity-induced recognition disturbance.

Journal: iScience

Status: code on request

[27950] doi:10.1016/j.isci.2024.109919 [paper, repository]

Behavioral and cortical arousal from sleep, muscimol-induced coma, and anesthesia by direct optogenetic stimulation of cortical neurons.

Journal: iScience

Authors' code: maomrong/mao-2023 (no license)

Status: code verified, 4 files readable, 1 match

[27951] doi:10.1016/j.isci.2024.109920 [paper]

Non-canonical type 1 cannabinoid receptor signaling regulates night visual processing in the inner rat retina.

Journal: iScience

Status: code on request

[27952] doi:10.1016/j.omtn.2024.102209 [paper]

A novel function and mechanism of ischemia-induced retinal astrocyte-derived exosomes for RGC apoptosis of ischemic retinopathy.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[27953] doi:10.1021/acs.jmedchem.4c00220 [paper, data]

Discovery and Preclinical Characterization of BIIB129, a Covalent, Selective, and Brain-Penetrant BTK Inhibitor for the Treatment of Multiple Sclerosis.

Journal: Journal of medicinal chemistry

Status: data only, 3 datasets cited

[27954] doi:10.1038/s41398-024-02913-z [paper, repository]

Faster bi-stable visual switching in psychosis.

Journal: Translational psychiatry

Authors' code: romainVala/matspec (GPL-3.0), mpschallmo/PsychosisHCP (CC-BY-4.0)

Status: code verified, 218 files readable, 4 matches

[27955] doi:10.1038/s41467-024-47996-w [paper, data]

Specific exercise patterns generate an epigenetic molecular memory window that drives long-term memory formation and identifies ACVR1C as a bidirectional regulator of memory in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[27956] doi:10.1038/s41556-024-01412-z [paper, repository]

Cerebral organoids display dynamic clonal growth and tunable tissue replenishment.

Journal: Nature cell biology

Authors' code: Cibiv/pyrganoid (no license)

Status: code verified, 40 files readable

[27957] doi:10.1038/s41597-024-03211-5 [paper, data]

Initiating PeriCBD to probe perinatal influences on neurodevelopment during 3-10 years in China.

Journal: Scientific data

Status: data only, 1 dataset cited

[27958] doi:10.1038/s42003-024-06223-4 [paper, data]

Chemogenetic activation of mammalian brain neurons expressing insect Ionotropic Receptors by systemic ligand precursor administration.

Journal: Communications biology

Status: data only, 1 dataset cited

[27959] doi:10.1073/pnas.2321711121 [paper, data]

A conserved molecular logic for neurogenesis to gliogenesis switch in the cerebral cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27960] doi:10.1093/braincomms/fcae139 [paper, repository]

Tracts in the limbic system show microstructural alterations post COVID-19 recovery.

Journal: Brain communications

Authors' code: OSF 3kh59 (no license)

Status: code verified, 5 files readable, 1 match

[27961] doi:10.1093/braincomms/fcae161 [paper, data]

Targeting thalamocortical circuits for closed-loop stimulation in Lennox-Gastaut syndrome.

Journal: Brain communications

Status: data only, 1 dataset cited

[27962] doi:10.1159/000538418 [paper, data]

Deep Brain Stimulation of the Globus Pallidus Internus in a Child with Refractory Dystonia due to L2-Hydroxyglutaric Aciduria.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[27963] doi:10.1186/s12864-024-10327-w [paper, data]

Integrated mRNA and miRNA analysis reveals the regulatory network of oxidative stress and inflammation in Coilia nasus brains during air exposure and salinity mitigation.

Journal: BMC genomics

Status: data only, 2 datasets cited

[27964] doi:10.1186/s12933-024-02255-6 [paper]

SGLT1 and SGLT2 inhibition, circulating metabolites, and cerebral small vessel disease: a mediation Mendelian Randomization study.

Journal: Cardiovascular diabetology

Status: code on request

[27965] doi:10.1186/s12974-024-03106-7 [paper, repository]

Impact of maternal immune activation and sex on placental and fetal brain cytokine and gene expression profiles in a preclinical model of neurodevelopmental disorders.

Journal: Journal of neuroinflammation

Authors' code: ciernialab (no license), ciernialab/ashwood-mia-rnaseq-2023 (GPL-3.0)

Status: code verified, 4 files readable, 3 matches

[27966] doi:10.1186/s12974-024-03114-7 [paper]

Neurons upregulate PD-L1 via IFN/STAT1/IRF1 to alleviate damage by CD8⁺ T cells in cerebral malaria.

Journal: Journal of neuroinflammation

Status: data only

[27967] doi:10.1186/s13071-024-06278-6 [paper]

Identification and coregulation pattern analysis of long noncoding RNAs in the mouse brain after Angiostrongylus cantonensis infection.

Journal: Parasites & vectors

Status: data only

[27968] doi:10.1186/s13072-024-00539-5 [paper, data]

Prenatal nicotine exposure leads to epigenetic alterations in peripheral nervous system signaling genes in the testis of the rat.

Journal: Epigenetics & chromatin

Status: data only, 1 dataset cited

[27969] doi:10.1371/journal.pbio.3002609 [paper, repository]

Protracted development of stick tool use skills extends into adulthood in wild western chimpanzees.

Journal: PLoS biology

Authors' code: supp:PMC11075877/pbio.3002609.s010.R (no license)

Status: code verified, 1 file readable

[27970] doi:10.14336/ad.2023.0507 [paper, data]

Thioredoxin1 Binding Metastasis-Associated Lung Adenocarcinoma Transcript 1 Attenuates Inflammation and Apoptosis after Intracerebral Hemorrhage.

Journal: Aging and disease

Status: data only, 1 dataset cited

[27971] doi:10.3389/fgene.2024.1356611 [paper, repository]

Cellular diversity through space and time: adding new dimensions to GBM therapeutic development.

Journal: Frontiers in genetics

Authors' code: Zenodo 22040374 (MIT)

Status: code verified, 12 files readable

[27972] doi:10.3389/fnins.2024.1375530 [paper, data]

Automatic geometry-based estimation of the locus coeruleus region on T&lt;sub&gt;1&lt;/sub&gt;-weighted magnetic resonance images.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[27973] doi:10.3390/bioengineering11050464 [paper, data]

Fast Fractional Fourier Transform-Aided Novel Graphical Approach for EEG Alcoholism Detection.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[27974] doi:10.3390/brainsci14050468 [paper, repository]

Error Function Optimization to Compare Neural Activity and Train Blended Rhythmic Networks.

Journal: Brain sciences

Authors' code: jbourahmahGSU/Voltage-recording-Error-function (no license), jbourahmahGSU/Blended-System (no license)

Status: code verified, 4 files readable

[27975] doi:10.3390/nu16101401 [paper, data]

Ketogenic Diet Induced Shifts in the Gut Microbiome Associate with Changes to Inflammatory Cytokines and Brain-Related miRNAs in Children with Autism Spectrum Disorder.

Journal: Nutrients

Status: data only, 1 dataset cited

[27976] doi:10.7554/elife.88053 [paper, repository]

Drift of neural ensembles driven by slow fluctuations of intrinsic excitability.

Journal: eLife

Authors' code: gdelamar/drift (MIT)

Status: code verified, 3 files readable

[27977] doi:10.7554/elife.89687 [paper, repository]

Synapsin E-domain is essential for α-synuclein function.

Journal: eLife

Authors' code: Zenodo 11067289 (CC-BY-4.0)

Status: code verified

Monday, 6 May 2024 (32 papers, 23 on this page)

[27978] doi:10.1007/s00421-024-05471-w [paper, data]

Eight weeks of high-intensity interval training versus stretching do not change the psychoneuroendocrine response to a social stress test in emotionally impulsive humans.

Journal: European journal of applied physiology

Status: data only, 1 dataset cited

[27979] doi:10.1007/s10456-024-09917-9 [paper, data]

IC100, a humanized therapeutic monoclonal anti-ASC antibody alleviates oxygen-induced retinopathy in mice.

Journal: Angiogenesis

Status: data only, 1 dataset cited

[27980] doi:10.1007/s11548-024-03143-w [paper, repository]

Neural digital twins: reconstructing complex medical environments for spatial planning in virtual reality.

Journal: International journal of computer assisted radiology and surgery

Authors' code: NVlabs/neuralangelo (other), autonomousvision/sdfstudio (Apache-2.0)

Status: code verified, 68 files readable, 1 match

[27981] doi:10.1007/s11682-024-00892-9 [paper, repository]

Memory retrieval effects as a function of differences in phenomenal experience.

Journal: Brain imaging and behavior

Authors' code: OSF tr78u (no license)

Status: code found, still to be checked

[27982] doi:10.1016/j.celrep.2024.114188 [paper, repository]

Simple synaptic modulations implement diverse novelty computations.

Journal: Cell reports

Authors' code: kaitken17/fms (no license), Zenodo 10914528 (CC-BY-4.0)

Status: code verified, 18 files readable, 20 matches

[27983] doi:10.1016/j.heliyon.2024.e30698 [paper]

Mixed anxiety-depressive disorder in Parkinson's disease associated with worse resting state functional response to deep brain stimulation of subthalamic nucleus.

Journal: Heliyon

Status: code on request

[27984] doi:10.1016/j.heliyon.2024.e30726 [paper, data]

Integrated single-cell and bulk RNA-sequencing data reveal molecular subtypes based on lactylation-related genes and prognosis and therapeutic response in glioma.

Journal: Heliyon

Status: data only, 1 dataset cited

[27985] doi:10.1016/j.jlr.2024.100555 [paper, data]

Unbiased insights into the multiplicity of the CYP46A1 brain effects in 5XFAD mice treated with low dose-efavirenz.

Journal: Journal of lipid research

Status: data only, 1 dataset cited

[27986] doi:10.1038/s41593-024-01626-2 [paper, repository]

Dimensionality reduction beyond neural subspaces with slice tensor component analysis.

Journal: Nature neuroscience

Authors' code: caycogajiclab/sliceTCA_paper (no license), arthur-pe/slicetca (MIT)

Status: code verified, 52 files readable, 6 matches

[27987] doi:10.1038/s41593-024-01634-2 [paper, repository]

Targeting pathological cells with senolytic drugs reduces seizures in neurodevelopmental mTOR-related epilepsy.

Journal: Nature neuroscience

Authors' code: jcponcer/poncerlab (GPL-3.0)

Status: code verified, 18 files readable

[27988] doi:10.1038/s42003-024-06210-9 [paper, repository]

The dynamics of functional brain network segregation in feedback-driven learning.

Journal: Communications biology

Authors' code: xiaoyu-TUD/functional-brain-network-segregation (no license)

Status: code verified, 41 files readable, 6 matches

[27989] doi:10.1038/s44271-024-00088-3 [paper, repository]

Loneliness corresponds with neural representations and language use that deviate from shared cultural perceptions.

Journal: Communications psychology

Authors' code: OSF v8wz5 (no license)

Status: code verified, 9 files readable, 13 matches

[27990] doi:10.1063/5.0196553 [paper, data]

Proteomics of human platelet lysates and insight from animal studies on platelet protein diffusion to hippocampus upon intranasal administration.

Journal: APL bioengineering

Status: data only, 1 dataset cited

[27991] doi:10.1073/pnas.2318119121 [paper, data]

Simultaneous targeting of peripheral and brain tumors with a therapeutic nanoparticle to disrupt metabolic adaptability at both sites.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27992] doi:10.1073/pnas.2322688121 [paper, data]

Cancer-stromal cell interactions in breast cancer brain metastases induce glycocalyx-mediated resistance to HER2-targeting therapies.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[27993] doi:10.1111/jre.13280 [paper, repository]

Exploring the link between tooth loss, cognitive function, and brain wellness in the context of healthy aging.

Journal: Journal of periodontal research

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[27994] doi:10.1152/ajpregu.00026.2024 [paper, data]

Pregnancy-induced oxidative stress and inflammation are not associated with impaired maternal neuronal activity or memory function.

Journal: American journal of physiology. Regulatory, integrative and comparative physiology

Status: data only, 1 dataset cited

[27995] doi:10.1159/000539212 [paper, data]

Distinguishing Laterality in Brain Injury in Rabbit Fetal Magnetic Resonance Imaging Using Novel Volume Rendering Techniques.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[27996] doi:10.1162/imag_a_00151 [paper, repository]

Resting-state global brain activity induces bias in fMRI motion estimates.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF sh79v (no license)

Status: code verified

[27997] doi:10.1162/opmi_a_00139 [paper, repository]

Two Determinants of Dynamic Adaptive Learning for Magnitudes and Probabilities.

Journal: Open mind : discoveries in cognitive science

Authors' code: cedricfoucault/ada-learn (MIT), florentmeyniel/TransitionProbModel (no license)

Status: code verified, 71 files readable, 6 matches

[27998] doi:10.1186/s12888-024-05789-x [paper]

Elucidating the association of obstructive sleep apnea with brain structure and cognitive performance.

Journal: BMC psychiatry

Status: code on request

[27999] doi:10.1186/s12911-024-02522-2 [paper, data]

Machine learning-empowered sleep staging classification using multi-modality signals.

Journal: BMC medical informatics and decision making

Status: data only, 2 datasets cited

[28000] doi:10.1186/s13195-024-01470-3 [paper, data]

Selective targeting and modulation of plaque associated microglia via systemic hydroxyl dendrimer administration in an Alzheimer's disease mouse model.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.