Every paper, by date: page 126

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 126 of 200: 6 May 2024 to 26 April 2024.

Monday, 6 May 2024 (32 papers, 9 on this page)

[28001] doi:10.1186/s40478-024-01779-y [paper, data]

Comprehensive analysis of the REST transcription factor regulatory networks in IDH mutant and IDH wild-type glioma cell lines and tumors.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[28002] doi:10.1186/s40659-024-00505-1 [paper, repository]

High-fat diet, microbiome-gut-brain axis signaling, and anxiety-like behavior in male rats.

Journal: Biological research

Authors' code: bioinfonupeb/hfd-insitu-microbiome (MIT)

Status: code verified, 3 files readable

[28003] doi:10.1371/journal.pcbi.1012053 [paper, repository]

Removing direct photocurrent artifacts in optogenetic connectivity mapping data via constrained matrix factorization.

Journal: PLoS computational biology

Authors' code: bantin/PhoRC (no license)

Status: code verified, 51 files readable, 6 matches

[28004] doi:10.1371/journal.pcbi.1012058 [paper, repository]

Brain2GAN: Feature-disentangled neural encoding and decoding of visual perception in the primate brain.

Journal: PLoS computational biology

Authors' code: neuralcodinglab/brain2gan (no license), NVlabs/stylegan3 (other), autonomousvision/stylegan-xl (MIT)

Status: code verified, 162 files readable, 6 matches

[28005] doi:10.1371/journal.pcbi.1012085 [paper, repository]

Differential disruptions in population coding along the dorsal-ventral axis of CA1 in the APP/PS1 mouse model of Aβ pathology.

Journal: PLoS computational biology

Authors' code: uday-chockanathan/AD_dvCA1 (no license)

Status: code verified, 1 file readable, 7 matches

[28006] doi:10.1371/journal.pone.0301090 [paper, repository]

Mapping lower secondary school students' conceptions of three aspects critical for understanding the nervous system.

Journal: PloS one

Authors' code: afhayes.com/spss-sas-and-r-macros-and-code.html (no license)

Status: code verified

[28007] doi:10.1371/journal.pone.0302660 [paper, data]

Lessons learned from an fMRI-guided rTMS study on performance in a numerical Stroop task.

Journal: PloS one

Status: data only, 1 dataset cited

[28008] doi:10.1523/eneuro.0173-23.2024 [paper, repository]

Resting-State Networks of Awake Adolescent and Adult Squirrel Monkeys Using Ultra-High Field (9.4 T) Functional Magnetic Resonance Imaging.

Journal: eNeuro

Authors' code: bbfrederick/spikefix (Apache-2.0)

Status: empty repository, 2 files readable

[28009] doi:10.3389/fneur.2024.1358167 [paper, repository]

EEG biomarkers analysis in different cognitive impairment after stroke: an exploration study.

Journal: Frontiers in neurology

Authors' code: Zenodo 10161630 (CC-BY-4.0), mne-tools/mne-python (BSD-3-Clause)

Status: code verified, 959 files readable, 3 matches

Sunday, 5 May 2024 (5 papers)

[28010] doi:10.1002/advs.202402059 [paper, data]

Impaired Meningeal Lymphatics and Glymphatic Pathway in Patients with White Matter Hyperintensity.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[28011] doi:10.1016/j.celrep.2024.114193 [paper]

Astrocytic Slc4a4 regulates blood-brain barrier integrity in healthy and stroke brains via a CCL2-CCR2 pathway and NO dysregulation.

Journal: Cell reports

Status: code on request

[28012] doi:10.1111/jsr.14230 [paper, repository]

Extended wakefulness alters the relationship between EEG oscillations and performance in a sustained attention task.

Journal: Journal of sleep research

Authors' code: snipeso/Lapse-Causes (MIT), HuberSleepLab/Matcycle (MIT)

Status: code verified, 228 files readable, 5 matches

[28013] doi:10.1186/s40478-024-01765-4 [paper, data]

Laminin-associated integrins mediate Diffuse Intrinsic Pontine Glioma infiltration and therapy response within a neural assembloid model.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[28014] doi:10.21769/bioprotoc.4984 [paper, data]

Generation of Skeletal Muscle Organoids from Human Pluripotent Stem Cells.

Journal: Bio-protocol

Status: data only, 1 dataset cited

Saturday, 4 May 2024 (7 papers)

[28015] doi:10.1016/j.heliyon.2024.e30755 [paper, data]

RNA-Seq data analysis reveals novel nonsense mutations in the NPR3 gene leading to the progression of intellectual disability disorder.

Journal: Heliyon

Status: data only, 1 dataset cited

[28016] doi:10.1016/j.jbc.2024.107344 [paper, repository]

Conditional deletion of miR-204 and miR-211 in murine retinal pigment epithelium results in retinal degeneration.

Journal: The Journal of biological chemistry

Authors' code: immunogenomics/harmony (no license)

Status: code verified, 32 files readable, 1 match

[28017] doi:10.1038/s41380-024-02561-1 [paper]

Monozygotic twins discordant for schizophrenia differ in maturation and synaptic transmission.

Journal: Molecular psychiatry

Status: data only

[28018] doi:10.1038/s41380-024-02578-6 [paper, data]

Autism patient-derived SHANK2B<sup>Y29X</sup> mutation affects the development of ALDH1A1 negative dopamine neuron.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[28019] doi:10.1038/s41598-024-60937-3 [paper, repository]

Inferring skin-brain-skin connections from infodemiology data using dynamic Bayesian networks.

Journal: Scientific reports

Authors' code: bnlearn.com/research/loreal21 (no license)

Status: code verified

[28020] doi:10.1038/s41598-024-61241-w [paper]

Characterization of PANoptosis-related genes and the immune landscape in moyamoya disease.

Journal: Scientific reports

Status: data only

[28021] doi:10.1038/s42003-024-06217-2 [paper, repository]

Personalized whole-brain neural mass models reveal combined Aβ and tau hyperexcitable influences in Alzheimer's disease.

Journal: Communications biology

Authors' code: neuropm-lab.com/publication-codes.html (no license), Zenodo 10909566 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

Friday, 3 May 2024 (31 papers)

[28022] doi:10.1016/j.celrep.2024.114189 [paper, repository]

Highly local activation of inhibition at the seizure wavefront in vivo.

Journal: Cell reports

Authors' code: Packer-Lab/imagingplus (MIT), Zenodo 10825258 (CC-BY-4.0), Packer-Lab/AllOpticalSeizure (no license), llerussell/Naparm (no license)

Status: code verified, 496 files readable, 19 matches

[28023] doi:10.1016/j.isci.2024.109872 [paper, repository]

Auditory processing of communication calls in interacting bats.

Journal: iScience

Authors' code: angiesalles/iScience_Salles_et_al_Bats (no license), angiesalles/battykoda (no license)

Status: code verified, 490 files readable, 7 matches

[28024] doi:10.1016/j.isci.2024.109874 [paper]

Systemic phospho-defective and phospho-mimetic Drp1 mice exhibit normal growth and development with altered anxiety-like behavior.

Journal: iScience

Status: code on request

[28025] doi:10.1016/j.isci.2024.109876 [paper, repository]

Prolactin blood concentration relies on the scalability of the TIDA neurons' network efficiency <i>in vivo</i>.

Journal: iScience

Authors' code: evacher888/matlab-scripts-for-calcium (GPL-3.0)

Status: code verified, 8 files readable, 4 matches

[28026] doi:10.1016/j.isci.2024.109878 [paper]

Optimization of AAV vectors for transactivator-regulated enhanced gene expression within targeted neuronal populations.

Journal: iScience

Status: code on request

[28027] doi:10.1016/j.isci.2024.109880 [paper, data]

Single-cell transcriptomic reveals a cell atlas and diversity of chicken amygdala responded to social hierarchy.

Journal: iScience

Status: code on request, 1 dataset cited

[28028] doi:10.1016/j.isci.2024.109886 [paper]

Visual looming is a primitive for human emotion.

Journal: iScience

Status: code on request

[28029] doi:10.1016/j.mbm.2024.100071 [paper, repository]

Asymmetric crowders and membrane morphology at the nexus of intracellular trafficking and oncology.

Journal: Mechanobiology in medicine

Authors' code: bradleyrp/automacs (no license)

Status: code verified, 31 files readable, 2 matches

[28030] doi:10.1016/j.xcrm.2024.101522 [paper]

Microglial CMPK2 promotes neuroinflammation and brain injury after ischemic stroke.

Journal: Cell reports. Medicine

Status: code on request

[28031] doi:10.1016/j.xcrm.2024.101529 [paper, repository]

Genetic variants for head size share genes and pathways with cancer.

Journal: Cell reports. Medicine

Authors' code: steinlabunc/expression_splicing_qtls_public (no license)

Status: code verified, 21 files readable, 1 match

[28032] doi:10.1016/j.xcrm.2024.101546 [paper, data]

Targeting low levels of MIF expression as a potential therapeutic strategy for ALS.

Journal: Cell reports. Medicine

Status: code on request, 1 dataset cited

[28033] doi:10.1016/j.xhgg.2024.100303 [paper, data]

A functional schizophrenia-associated genetic variant near the TSNARE1 and ADGRB1 genes.

Journal: HGG advances

Status: data only, 1 dataset cited

[28034] doi:10.1021/acsomega.4c00028 [paper, data]

Imidazole-Derived Alkyl and Aryl Ethers: Synthesis, Characterization, In Vitro Anticancer and Antioxidant Activities, Carbonic Anhydrase I-II Inhibition Properties, and In Silico Studies.

Journal: ACS omega

Status: data only, 6 datasets cited

[28035] doi:10.1038/s41467-024-47649-y [paper, repository]

Discovery of immunotherapy targets for pediatric solid and brain tumors by exon-level expression.

Journal: Nature communications

Authors' code: shawlab-moffitt/CSEminer-manuscript (no license), Zenodo 10672928 (CC-BY-4.0), Zenodo 10594740 (no license)

Status: code verified, 20 files readable, 1 match

[28036] doi:10.1038/s41467-024-47945-7 [paper, repository]

A human neural crest model reveals the developmental impact of neuroblastoma-associated chromosomal aberrations.

Journal: Nature communications

Authors' code: cancerbits/saldana_montano2024_ncnb (no license), Zenodo 10891507 (CC-BY-4.0)

Status: code verified, 136 files readable, 40 matches

[28037] doi:10.1089/neu.2023.0099 [paper]

Widespread White Matter Abnormalities in Concussed Athletes Detected by 7T Diffusion Magnetic Resonance Imaging.

Journal: Journal of neurotrauma

Status: code on request

[28038] doi:10.1093/braincomms/fcae145 [paper]

Virtual reality gameplay classification illustrates the multidimensionality of visuospatial neglect.

Journal: Brain communications

Status: code on request

[28039] doi:10.1093/pnasnexus/pgae174 [paper, data]

Activation of feedforward wiring in adult hippocampal neurons by the basic-helix-loop-helix transcription factor Ascl4.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[28040] doi:10.1126/sciadv.adk7257 [paper, repository]

Unified control of temporal and spatial scales of sensorimotor behavior through neuromodulation of short-term synaptic plasticity.

Journal: Science advances

Authors' code: Zenodo 10405269 (CC-BY-4.0), ShanglinZhou/Temporal_Spatial_Scale_STP (no license)

Status: code verified, 8 files readable, 5 matches

[28041] doi:10.1126/sciadv.adm7039 [paper, repository]

FOXP1 regulates the development of excitatory synaptic inputs onto striatal neurons and induces phenotypic reversal with reinstatement.

Journal: Science advances

Authors' code: ColdP1228/Custom-Data-Acquisition-Program- (MIT), elifesciences-publications/Custom-Data-Acquisition-Program- (MIT), Zenodo 10685148 (CC-BY-4.0), konopkalab/foxp1-spn-development (no license)

Status: code verified, 6 files readable

[28042] doi:10.1186/s12864-024-10363-6 [paper, data]

Unraveling the genetic architecture of blood unfolded p-53 among non-demented elderlies: novel candidate genes for early Alzheimer's disease.

Journal: BMC genomics

Status: data only, 1 dataset cited

[28043] doi:10.1186/s12911-024-02514-2 [paper, repository]

Continuous patient state attention model for addressing irregularity in electronic health records.

Journal: BMC medical informatics and decision making

Authors' code: codeocean:4587224 (no license), YerevaNN/mimic3-benchmarks (MIT), locuslab/TCN (MIT), reml-lab/mTAN (MIT), YuliaRubanova/latent_ode (MIT)

Status: code verified, 122 files readable, 3 matches

[28044] doi:10.1186/s40478-024-01761-8 [paper, data]

Neuropathological assessment of the olfactory bulb and tract in individuals with COVID-19.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[28045] doi:10.1371/journal.pcbi.1011350 [paper, repository]

Re-awakening the brain: Forcing transitions in disorders of consciousness by external in silico perturbation.

Journal: PLoS computational biology

Authors' code: pcdagnino/Awakening_Coma_2023 (CC-BY-NC-4.0)

Status: code verified, 15 files readable, 5 matches

[28046] doi:10.1523/eneuro.0251-23.2024 [paper, repository]

Unsupervised Characterization of Prediction Error Markers in Unisensory and Multisensory Streams Reveal the Spatiotemporal Hierarchy of Cortical Information Processing.

Journal: eNeuro

Authors' code: cbdl/pe_erpandsourceanalysis (no license)

Status: empty repository

[28047] doi:10.3389/fimmu.2024.1384516 [paper, data]

A murine model of post-acute neurological sequelae following SARS-CoV-2 variant infection.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[28048] doi:10.3389/fnins.2024.1373515 [paper, data]

Data leakage in deep learning studies of translational EEG.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[28049] doi:10.3389/fpsyg.2024.1380196 [paper, repository]

Modality-specific impacts of distractors on visual and auditory categorical decision-making: an evidence accumulation perspective.

Journal: Frontiers in psychology

Authors' code: OSF vfegr (no license)

Status: code verified, 54 files readable, 10 matches

[28050] doi:10.3390/brainsci14050462 [paper, repository]

Motor Imagery Classification Using Effective Channel Selection of Multichannel EEG.

Journal: Brain sciences

Authors' code: Shiam-Cse-Ru/EEG (no license)

Status: code verified, 1 file readable

[28051] doi:10.3390/ijms25095003 [paper, repository]

Poor Decision Making and Sociability Impairment Following Central Serotonin Reduction in Inducible TPH2-Knockdown Rats.

Journal: International journal of molecular sciences

Authors' code: alonsolucille/TetO-shTPH2_rats (GPL-3.0)

Status: code verified, 4 files readable, 8 matches

[28052] doi:10.7554/elife.83897 [paper, data]

Cholecystokinin facilitates motor skill learning by modulating neuroplasticity in the motor cortex.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 2 May 2024 (20 papers)

[28053] doi:10.1016/j.celrep.2024.114172 [paper]

Auditory discrimination learning differentially modulates neural representation in auditory cortex subregions and inter-areal connectivity.

Journal: Cell reports

Status: code on request

[28054] doi:10.1016/j.ebiom.2024.105124 [paper, data]

The anti-leprosy drug clofazimine reduces polyQ toxicity through activation of PPARγ.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[28055] doi:10.1016/j.patter.2024.100987 [paper, repository]

Cortical similarities in psychiatric and mood disorders identified in federated VBM analysis via COINSTAC.

Journal: Patterns (New York, N.Y.)

Authors' code: trendscenter/coinstac (MIT), Zenodo 10892084 (MIT)

Status: code verified, 222 files readable, 1 match

[28056] doi:10.1038/s41467-024-46976-4 [paper, repository]

A sparse quantized hopfield network for online-continual memory.

Journal: Nature communications

Authors' code: nalonso2/SQHN (no license)

Status: code verified, 34 files readable, 10 matches

[28057] doi:10.1038/s41467-024-47453-8 [paper, repository]

Multiplexed representation of others in the hippocampal CA1 subfield of female mice.

Journal: Nature communications

Authors' code: aharoni-lab/miniscope-daq-qt-software (GPL-3.0), etterguillaume/MiniscopeAnalysis (GPL-3.0), zhoupc/CNMF_E (GPL-3.0), SherlockX-hub/SocialVectorCell-Public (MIT)

Status: code verified, 363 files readable, 3 matches

[28058] doi:10.1038/s41531-024-00712-3 [paper, repository]

Progression subtypes in Parkinson's disease identified by a data-driven multi cohort analysis.

Journal: NPJ Parkinson's disease

Authors' code: SCAI-BIO/PD-progression-types (CC-BY-NC-ND-4.0)

Status: code verified, 9 files readable, 16 matches

[28059] doi:10.1038/s41598-024-60934-6 [paper, repository]

Reduced processing of afforded actions while observing mental content as ongoing mental phenomena.

Journal: Scientific reports

Authors' code: OSF njycg (no license)

Status: code verified, 1 file readable, 1 match

[28060] doi:10.1038/s41746-024-01123-7 [paper, repository]

Constructing personalized characterizations of structural brain aberrations in patients with dementia using explainable artificial intelligence.

Journal: NPJ digital medicine

Authors' code: estenhl/pyment-public (CC-BY-NC-4.0), estenhl/keras-explainability (CC-BY-NC-4.0)

Status: code verified, 121 files readable, 2 matches

[28061] doi:10.1038/s42003-024-06175-9 [paper, data]

Human intraparietal sulcal morphology relates to individual differences in language and memory performance.

Journal: Communications biology

Status: data only, 2 datasets cited

[28062] doi:10.1038/s44319-024-00147-0 [paper, repository]

Synaptotagmin-11 facilitates assembly of a presynaptic signaling complex in post-Golgi cargo vesicles.

Journal: EMBO reports

Authors' code: neurodroid.github.io/stimfit (no license)

Status: code verified

[28063] doi:10.1128/mbio.00736-24 [paper, repository]

Phenotypic and transcriptional changes in peripheral blood mononuclear cells during alphavirus encephalitis in mice.

Journal: mBio

Authors' code: b-hnguyen/sinv-pbmc-scseq (no license)

Status: code verified, 2 files readable, 4 matches

[28064] doi:10.1155/2024/8972980 [paper, data]

Swin Transformer and the Unet Architecture to Correct Motion Artifacts in Magnetic Resonance Image Reconstruction.

Journal: International journal of biomedical imaging

Status: data only, 1 dataset cited

[28065] doi:10.1162/imag_a_00156 [paper, repository]

Preliminary evidence for altered brain-heart coherence during anxiogenic movies.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 9vy87 (no license)

Status: code verified, 19 files readable, 5 matches

[28066] doi:10.1162/imag_a_00157 [paper, repository]

Removing scanner effects with a multivariate latent approach: A RELIEF for the ABCD imaging data?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: dominikkraft/ABCD_relief (BSD-3-Clause)

Status: code verified, 8 files readable

[28067] doi:10.1186/s12974-024-03100-z [paper, data]

Maternal immunoglobulin G affects brain development of mouse offspring.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[28068] doi:10.1371/journal.pcbi.1012074 [paper, repository]

The quality and complexity of pairwise maximum entropy models for large cortical populations.

Journal: PLoS computational biology

Authors' code: figshare 17903834 (CC-BY-4.0), OSF dajc6 (no license)

Status: code verified, 17 files readable, 5 matches

[28069] doi:10.1371/journal.pone.0299939 [paper, repository]

Short communication: Lifetime musical activity and resting-state functional connectivity in cognitive networks.

Journal: PloS one

Authors' code: OSF g73a9 (no license)

Status: code verified, 9 files readable, 7 matches

[28070] doi:10.1371/journal.pone.0301851 [paper, data]

Clinical usability study of a home-based self-administration transcranial direct current stimulation for primary dysmenorrhea: A randomized controlled trial.

Journal: PloS one

Status: data only, 1 dataset cited

[28071] doi:10.3389/fnagi.2024.1399943 [paper, repository]

Moderating effect of education on glymphatic function and cognitive performance in mild cognitive impairment.

Journal: Frontiers in aging neuroscience

Authors' code: Zenodo 3937147 (Apache-2.0)

Status: code verified

[28072] doi:10.7554/elife.90069 [paper, repository]

Representational drift as a result of implicit regularization.

Journal: eLife

Authors' code: Aviv-Ratzon/DriftReg (Apache-2.0)

Status: code verified, 23 files readable

Wednesday, 1 May 2024 (74 papers)

[28073] doi:10.1002/brb3.3484 [paper, repository]

Executive functions and brain morphology of male and female dominant and subordinate cichlid fish.

Journal: Brain and behavior

Authors' code: figshare 24099840 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[28074] doi:10.1002/ctm2.1680 [paper]

Targeting c-Myc transactivation by LMNA inhibits tRNA processing essential for malate-aspartate shuttle and tumour progression.

Journal: Clinical and translational medicine

Status: data only

[28075] doi:10.1002/hbm.26684 [paper, data]

Mapping brain function in adults and young children during naturalistic viewing with high-density diffuse optical tomography.

Journal: Human brain mapping

Status: code on request, 1 dataset cited

[28076] doi:10.1002/hbm.26699 [paper, repository]

A cautionary tale on the effects of different covariance structures in linear mixed effects modeling of fMRI data.

Journal: Human brain mapping

Authors' code: jling-NM/Different-Covariance-Structures-in-Linear-Mixed-Effects-Modeling-of-fMRI-Data (GPL)

Status: code verified, 2 files readable

[28077] doi:10.1002/hbm.26703 [paper, repository]

Default mode network shows distinct emotional and contextual responses yet common effects of retrieval demands across tasks.

Journal: Human brain mapping

Authors' code: OSF 498ur (no license)

Status: code verified, 3 files readable, 1 match

[28078] doi:10.1016/j.cell.2024.03.016 [paper, repository]

Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster.

Journal: Cell

Authors' code: navis-org/navis (GPL-3.0), navis-org/navis-flybrains (GPL-3.0), navis-org/pymaid (GPL-3.0), navis-org/fafbseg-py (GPL-3.0), navis-org/skeletor (GPL-3.0), connectome-neuprint/neuprint-python (BSD-3-Clause), funkelab/synister (no license), Zenodo 20350569 (GPL-3.0), Zenodo 20350570 (GPL-3.0)

Status: code verified, 475 files readable, 13 matches

[28079] doi:10.1016/j.xcrm.2024.101543 [paper, repository]

Increased intestinal bile acid absorption contributes to age-related cognitive impairment.

Journal: Cell reports. Medicine

Authors' code: adni-info.org (no license), loni.usc.edu/adni (no license)

Status: code verified

[28080] doi:10.1016/j.xgen.2023.100421 [paper, repository]

Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures.

Journal: Cell genomics

Authors' code: Zenodo 7877121 (MIT), Zenodo 7853666 (other-open), MoTrPAC/motrpac-rna-seq-pipeline (MIT), Zenodo 7853656 (other-open), MoTrPAC/motrpac-atac-seq-pipeline (MIT), Zenodo 7853676 (other-open), MoTrPAC/motrpac-rrbs-pipeline (MIT), Zenodo 7854050 (other-open), MoTrPAC/MotrpacRatTraining6moQCRep (no license), Zenodo 8287948 (other-open), tissue-manuscript/epigenetics-of-tissue-gene-expression (no license), ENCODE-DCC/atac-seq-pipeline (MIT)

Status: code verified, 240 files readable, 10 matches

[28081] doi:10.1016/j.xgen.2024.100545 [paper, repository]

Complementation testing identifies genes mediating effects at quantitative trait loci underlying fear-related behavior.

Journal: Cell genomics

Authors' code: FelixKrueger/Bismark (GPL-3.0), satijalab/seurat (other), Zenodo 10892164 (CC-BY-4.0), genetics.cs.ucla.edu/meta_jemdoc (no license)

Status: code verified, 409 files readable, 13 matches

[28082] doi:10.1016/j.xgen.2024.100556 [paper, repository]

Variant-to-function analysis of the childhood obesity chr12q13 locus implicates rs7132908 as a causal variant within the 3' UTR of FAIM2.

Journal: Cell genomics

Authors' code: macs3-project/MACS (BSD-3-Clause), bvoightlab/ColocQuiaL (GPL-3.0), scicrunch.org/resolver/scr_014966 (no license)

Status: code verified, 242 files readable, 5 matches

[28083] doi:10.1016/j.ynstr.2024.100637 [paper, data]

Subcallosal area 25: Its responsivity to the stress hormone cortisol and its opposing effects on appetitive motivation in marmosets.

Journal: Neurobiology of stress

Status: data only, 1 dataset cited

[28084] doi:10.1038/s41380-024-02577-7 [paper]

The interplay between polygenic score for tumor necrosis factor-α, brain structural connectivity, and processing speed in major depression.

Journal: Molecular psychiatry

Status: code on request

[28085] doi:10.1038/s41467-024-47971-5 [paper, repository]

Cerebrospinal fluid reference proteins increase accuracy and interpretability of biomarkers for brain diseases.

Journal: Nature communications

Authors' code: karlssonlinda/reference_protein_project (no license)

Status: code verified, 7 files readable, 3 matches

[28086] doi:10.1038/s41467-024-48103-9 [paper]

An artificial visual neuron with multiplexed rate and time-to-first-spike coding.

Journal: Nature communications

Status: code on request

[28087] doi:10.1038/s41467-024-48126-2 [paper, repository]

Eye movements track prioritized auditory features in selective attention to natural speech.

Journal: Nature communications

Authors' code: christianbrodbeck/TRF-Tools (MIT), OSF m6rfq (no license)

Status: code verified, 53 files readable, 5 matches

[28088] doi:10.1038/s41586-024-07234-1 [paper, repository]

Chromatin accessibility during human first-trimester neurodevelopment.

Journal: Nature

Authors' code: linnarsson-lab/chromograph (no license), calebclayreagor/DELAY (GPL-3.0), linnarsson-lab/fetal_brain_multiomics (BSD-2-Clause), Zenodo 10974851 (CC-BY-4.0)

Status: code verified, 112 files readable, 30 matches

[28089] doi:10.1038/s41586-024-07367-3 [paper, repository]

Sleep pressure modulates single-neuron synapse number in zebrafish.

Journal: Nature

Authors' code: anyasupp/single-neuron-synapse (no license), JRihel/Sleep-Analysis (CC0-1.0), francoiskroll/FramebyFrame (GPL-3.0)

Status: code verified, 82 files readable, 6 matches

[28090] doi:10.1038/s41586-024-07469-y [paper]

A body-brain circuit that regulates body inflammatory responses.

Journal: Nature

Status: code on request

[28091] doi:10.1038/s41593-024-01633-3 [paper, repository]

Closed-loop recruitment of striatal interneurons prevents compulsive-like grooming behaviors.

Journal: Nature neuroscience

Authors' code: LizbethMG/2024_Mondragon-Gonzalez_NatureNeuroscience (no license)

Status: code verified, 3 files readable, 1 match

[28092] doi:10.1038/s41598-024-59570-x [paper, repository]

Exploring virtual reality object perception following sensory-motor interactions with different visuo-haptic collider properties.

Journal: Scientific reports

Authors' code: OSF qcmpr (no license)

Status: empty repository

[28093] doi:10.1038/s42003-024-06214-5 [paper, repository]

Forming cognitive maps for abstract spaces: the roles of the human hippocampus and orbitofrontal cortex.

Journal: Communications biology

Authors' code: YidanQiu/AbsNvg (no license), Zenodo 10937556 (CC-BY-4.0)

Status: code verified, 8 files readable, 1 match

[28094] doi:10.1073/pnas.2318757121 [paper, repository]

Interdependence of cellular and network properties in respiratory rhythm generation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: RyanSeanPhillips/Interdependence-of-cellular-and-network-properties-in-respiratory-rhythm-generation (GPL-3.0)

Status: code verified, 4 files readable

[28095] doi:10.1093/bib/bbae250 [paper, repository]

Benchmarking mapping algorithms for cell-type annotating in mouse brain by integrating single-nucleus RNA-seq and Stereo-seq data.

Journal: Briefings in bioinformatics

Authors' code: rdong08/spatialDWLS_dataset (no license), dmcable/spacexr (GPL-3.0), broadinstitute/Tangram (BSD-3-Clause), BayraktarLab/cell2location (Apache-2.0), scverse/scvi-tools (BSD-3-Clause), stomics/spatialid (MIT), ddb-qiwang/SPANN-torch (Apache-2.0), caokai1073/uniPort (MIT), qytao185/benchmarking-mapping-algorithms (no license)

Status: code verified, 632 files readable, 14 matches

[28096] doi:10.1093/bib/bbae259 [paper, data]

SpaNCMG: improving spatial domains identification of spatial transcriptomics using neighborhood-complementary mixed-view graph convolutional network.

Journal: Briefings in bioinformatics

Status: data only, 1 dataset cited

[28097] doi:10.1093/bib/bbae265 [paper]

Approaches to embryonic neurodevelopment: from neural cell to neural tube formation through mathematical models.

Journal: Briefings in bioinformatics

Status: code on request

[28098] doi:10.1093/bib/bbae323 [paper, repository]

CWAS-Plus: estimating category-wide association of rare noncoding variation from whole-genome sequencing data with cell-type-specific functional data.

Journal: Briefings in bioinformatics

Authors' code: sanderslab/cwas (no license), joonan-lab/cwas (MIT), Zenodo 10795678 (CC-BY-4.0), cwas-plus.readthedocs.io (no license), Zenodo 11240547 (CC-BY-4.0), Zenodo 8409105 (CC-BY-4.0), randrover/cwas_2024_analysis (MIT)

Status: code verified, 300 files readable, 3 matches

[28099] doi:10.1093/bioinformatics/btae143 [paper, repository]

Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS.

Journal: Bioinformatics (Oxford, England)

Authors' code: cantinilab/HuMMuS (AGPL-3.0)

Status: code verified, 18 files readable, 1 match

[28100] doi:10.1093/brain/awad420 [paper, repository]

Basal forebrain integrity, cholinergic innervation and cognition in idiopathic Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: neuro-stivenr/fernet-freewater (GPL-3.0)

Status: code verified, 8 files readable, 3 matches

[28101] doi:10.1093/brain/awae031 [paper, data]

Engineered Wnt7a ligands rescue blood-brain barrier and cognitive deficits in a COVID-19 mouse model.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[28102] doi:10.1093/cercor/bhae179 [paper, data]

Distinct neural markers of evidence accumulation index metacognitive processing before and after simple visual decisions.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[28103] doi:10.1093/cercor/bhae183 [paper, repository]

Delineating memory reactivation in sleep with verbal and non-verbal retrieval cues.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 6zpdg (no license)

Status: code verified, 33 files readable, 12 matches

[28104] doi:10.1093/cercor/bhae186 [paper, repository]

Aperiodic components of local field potentials reflect inherent differences between cortical and subcortical activity.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Brain-Modulation-Lab/bml (no license), Brain-Modulation-Lab/Paper_AperiodicComponent (no license)

Status: code verified, 244 files readable, 11 matches

[28105] doi:10.1093/cercor/bhae187 [paper, repository]

Asynchronous behavioral and neurophysiological changes in word production in the adult lifespan.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: EricMenetre/NPL (no license)

Status: code verified, 28 files readable, 1 match

[28106] doi:10.1093/cercor/bhae194 [paper, repository]

Neural correlates of retrospective memory confidence during face-name associative learning.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: weiyongxu/FaceName-Brain (MIT)

Status: code verified, 31 files readable, 9 matches

[28107] doi:10.1093/cercor/bhae211 [paper]

Neural computations in prosopagnosia.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[28108] doi:10.1093/cercor/bhae214 [paper, repository]

Neural and psychological correlates of post-traumatic stress symptoms in a community adult sample.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: cran.r-project.org/package=ssvs (no license)

Status: code verified

[28109] doi:10.1093/g3journal/jkae051 [paper, repository]

Parental thermal environment controls the offspring phenotype in Brook charr (Salvelinus fontinalis): insights from a transcriptomic study.

Journal: G3 (Bethesda, Md.)

Authors' code: enormandeau/go_enrichment (GPL-3.0)

Status: code verified, 7 files readable

[28110] doi:10.1093/nar/gkae158 [paper, data]

HBO1 determines SMAD action in pluripotency and mesendoderm specification.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[28111] doi:10.1093/scan/nsae029 [paper, repository]

Exposure to community violence as a mechanism linking neighborhood socioeconomic disadvantage and neural responses to reward.

Journal: Social cognitive and affective neuroscience

Authors' code: UMich-Mind-Lab/pipeline-task-standard (no license)

Status: code verified, 41 files readable

[28112] doi:10.1093/scan/nsae030 [paper, repository]

Multidimensional neural representations of social features during movie viewing.

Journal: Social cognitive and affective neuroscience

Authors' code: lchang31/MultipleRegression (no license)

Status: code verified, 15 files readable, 1 match

[28113] doi:10.1097/md.0000000000038261 [paper, data]

Investigating the molecular mechanism of Mori Cortex against osteosarcoma by bioinformatics analysis and in vitro experimental.

Journal: Medicine

Status: data only, 1 dataset cited

[28114] doi:10.1098/rsos.230590 [paper, repository]

Effects of passive ankle exoskeletons on neuromuscular function during exaggerated standing sway.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.7158550 (no license)

Status: code found, still to be checked

[28115] doi:10.1098/rsos.231496 [paper, repository]

Geographical and economic influences on neuroimaging modality choice.

Journal: Royal Society open science

Authors' code: OSF 6xy2q (no license)

Status: code verified, 2 files readable, 3 matches

[28116] doi:10.1101/2024.04.29.24306535 [paper, repository]

Genome-wide study of half a million individuals with major depression identifies 697 independent associations, infers causal neuronal subtypes and biological targets for novel pharmacotherapies

Journal: medRxiv (preprint)

Authors' code: psychiatric-genomics-consortium/mdd-wave3-meta (MIT)

Status: code verified, 221 files readable

[28117] doi:10.1101/2024.05.01.592002 [paper, data]

Representational similarity modulates neural and behavioral signatures of novelty

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[28118] doi:10.1101/lm.053894.123 [paper, data]

The Phylogeny of the Hymenopteran Brain.

Journal: Learning & memory (Cold Spring Harbor, N.Y.)

Status: data only, 1 dataset cited

[28119] doi:10.1101/lm.053997.124 [paper, repository]

The caloric value of food intake structurally adjusts a neuronal mushroom body circuit mediating olfactory learning in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: Learning & memory (Cold Spring Harbor, N.Y.)

Authors' code: ribeiro-lab/optoPAD-software (GPL-3.0)

Status: empty repository, 2 files readable

[28120] doi:10.1111/adb.13396 [paper, data]

Loss, gain and choice difficulty in gambling patients: Neural and behavioural processes.

Journal: Addiction biology

Status: data only, 1 dataset cited

[28121] doi:10.1111/cns.14684 [paper]

Unveiling convergent and divergent intrinsic brain network alternations in depressed adolescents engaged in non-suicidal self-injurious behaviors with and without suicide attempts.

Journal: CNS neuroscience & therapeutics

Status: code on request

[28122] doi:10.1111/cns.14742 [paper]

Inhibition of ADORA3 promotes microglial phagocytosis and alleviates chronic ischemic white matter injury.

Journal: CNS neuroscience & therapeutics

Status: data only

[28123] doi:10.1111/jcmm.18296 [paper, data]

Machine learning and deep learning to identifying subarachnoid haemorrhage macrophage-associated biomarkers by bulk and single-cell sequencing.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[28124] doi:10.1111/jcmm.18339 [paper]

Multi-omics analysis reveals the association between specific solute carrier proteins gene expression patterns and the immune suppressive microenvironment in glioma.

Journal: Journal of cellular and molecular medicine

Status: data only

[28125] doi:10.1111/jcmm.18352 [paper, data]

A potassium-chloride co-transporter with altered genome architecture functions as a suppressor in glioma.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[28126] doi:10.1111/jcmm.18396 [paper, data]

Role of ferroptosis in neuroimmunity and neurodegeneration in multiple sclerosis revealed by multi-omics data.

Journal: Journal of cellular and molecular medicine

Status: data only, 1 dataset cited

[28127] doi:10.1148/ryai.230077 [paper, repository]

Semi-supervised Learning for Generalizable Intracranial Hemorrhage Detection and Segmentation.

Journal: Radiology. Artificial intelligence

Authors' code: fyu/drn (BSD-3-Clause)

Status: code verified, 24 files readable

[28128] doi:10.1162/imag_a_00134 [paper, repository]

Broad brain networks support curiosity-motivated incidental learning of naturalistic dynamic stimuli with and without monetary incentives.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jmtyszka/atlaskit (GPL-3.0), stefaniemeliss/MIL_paper (no license)

Status: code verified, 85 files readable, 20 matches

[28129] doi:10.1162/imag_a_00149 [paper, repository]

Disentangling reference frames in the neural compass.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: BottiniLab/allo-ego (no license)

Status: dead link

[28130] doi:10.1167/iovs.65.5.16 [paper, repository]

Outer Retinal Thickness Is Associated With Cognitive Function in Normal Aging to Intermediate Age-Related Macular Degeneration.

Journal: Investigative ophthalmology & visual science

Authors' code: sites.imagej.net/creativecomputation (no license)

Status: code verified

[28131] doi:10.1167/jov.24.5.11 [paper, repository]

Effect of spatial context on perceived walking direction.

Journal: Journal of vision

Authors' code: OSF ygrhn (no license)

Status: code verified, 3 files readable, 1 match

[28132] doi:10.1167/jov.24.5.7 [paper, repository]

Training-induced changes in population receptive field properties in visual cortex: Impact of eccentric vision training on population receptive field properties and the crowding effect.

Journal: Journal of vision

Authors' code: vistalab.stanford.edu/software (no license)

Status: dead link

[28133] doi:10.1192/bjp.2024.41 [paper, repository]

Impaired topology and connectivity of grey matter structural networks in major depressive disorder: evidence from a multi-site neuroimaging data-set.

Journal: The British journal of psychiatry : the journal of mental science

Authors' code: brainlife/BCT (MIT)

Status: code verified, 136 files readable

[28134] doi:10.1210/endocr/bqae060 [paper, repository]

Investigating GABA Neuron-Specific Androgen Receptor Knockout in two Hyperandrogenic Models of PCOS.

Journal: Endocrinology

Authors' code: figshare 25857574 (CC-BY-4.0)

Status: empty repository

[28135] doi:10.1364/oe.519379 [paper, repository]

Exploiting holographically encoded variance to transmit labelled images through a multimode optical fiber.

Journal: Optics express

Authors' code: kaggle.com/dsv/7904588 (no license)

Status: dead link

[28136] doi:10.14814/phy2.16029 [paper, data]

Electrophysiological phenotyping of left ventricular noncompaction cardiomyopathy in pediatric populations: A systematic review.

Journal: Physiological reports

Status: data only, 1 dataset cited

[28137] doi:10.1503/jpn.230106 [paper, repository]

Disproportionate neuroanatomical effects of &lt;i&gt;DCC&lt;/i&gt; haploinsufficiency in adolescence compared with adulthood: links to dopamine, connectivity, covariance, and gene expression brain maps in mice.

Journal: Journal of psychiatry & neuroscience : JPN

Authors' code: OSF h64qf (no license), cran.r-project.org/package=rminc (no license)

Status: code verified, 1 file readable, 11 matches

[28138] doi:10.1523/jneurosci.1461-23.2024 [paper, data]

Differential Expression Analysis Identifies Candidate Synaptogenic Molecules for Wiring Direction-Selective Circuits in the Retina.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[28139] doi:10.1523/jneurosci.1607-23.2024 [paper]

Excitatory Spinal Lhx9-Derived Interneurons Modulate Locomotor Frequency in Mice.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[28140] doi:10.1523/jneurosci.1740-23.2024 [paper, data]

An Enduring Role for Hippocampal Pattern Completion in Addition to an Emergent Nonhippocampal Contribution to Holistic Episodic Retrieval after a 24 h Delay.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 2 datasets cited

[28141] doi:10.24272/j.issn.2095-8137.2023.412 [paper, data]

Functional dissection of parabrachial substrates in processing nociceptive information.

Journal: Zoological research

Status: data only, 1 dataset cited

[28142] doi:10.3389/fcell.2024.1341373 [paper, data]

Sex-biased gene expression during neural differentiation of human embryonic stem cells.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[28143] doi:10.3390/ijms25094943 [paper, repository]

Positron Emission Tomography with [&lt;sup&gt;18&lt;/sup&gt;F]ROStrace Reveals Progressive Elevations in Oxidative Stress in a Mouse Model of Alpha-Synucleinopathy.

Journal: International journal of molecular sciences

Authors' code: Evangall/fiji-scripts (no license)

Status: empty repository, 1 file readable

[28144] doi:10.4103/1673-5374.385307 [paper, repository]

Forebrain excitatory neuron-specific loss of Brpf1 attenuates excitatory synaptic transmission and impairs spatial and fear memory.

Journal: Neural regeneration research

Authors' code: alexdobin/star (MIT), gpertea/stringtie (MIT)

Status: code verified, 711 files readable, 1 match

[28145] doi:10.59275/j.melba.2024-7189 [paper, repository]

Leveraging SO(3)-steerable convolutions for pose-robust semantic segmentation in 3D medical data.

Journal: The journal of machine learning for biomedical imaging

Authors' code: SCAN-NRAD/e3nn_Unet (MIT)

Status: code verified, 10 files readable, 4 matches

[28146] doi:10.7555/jbr.38.20240114 [paper, data]

Post-transcriptional dysregulation in autism, schizophrenia, and bipolar disorder.

Journal: Journal of biomedical research

Status: data only, 1 dataset cited

Tuesday, 30 April 2024 (31 papers)

[28147] doi:10.1002/advs.202309218 [paper, repository]

High Spatiotemporal Resolution Radial Encoding Single-Vessel fMRI.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: afni.nimh.nih.gov (no license)

Status: code verified

[28148] doi:10.1016/j.clinsp.2024.100373 [paper]

The mechanism of mitochondrial metabolic gene PMAIP1 involved in Alzheimer's disease process based on bioinformatics analysis and experimental validation.

Journal: Clinics (Sao Paulo, Brazil)

Status: data only

[28149] doi:10.1038/s41419-024-06686-7 [paper, repository]

Actin-nucleation promoting factor N-WASP influences alpha-synuclein condensates and pathology.

Journal: Cell death & disease

Authors' code: Zenodo 1158612 (other-open), adrigabzu/sholl_analysis_in_r (GPL-3.0)

Status: code verified, 6 files readable

[28150] doi:10.1038/s41467-024-46879-4 [paper, repository]

Training an Ising machine with equilibrium propagation.

Journal: Nature communications

Authors' code: jlaydevant/Ising-Machine-EqProp (no license)

Status: code verified, 15 files readable, 3 matches

[28151] doi:10.1038/s41467-024-47456-5 [paper, repository]

Dopamine signaling enriched striatal gene set predicts striatal dopamine synthesis and physiological activity in vivo.

Journal: Nature communications

Authors' code: jmarchini.org/software (no license)

Status: code verified

[28152] doi:10.1038/s41467-024-47499-8 [paper, data]

The gene "degrees of kevin bacon" (dokb) regulates a social network behaviour in Drosophila melanogaster.

Journal: Nature communications

Status: code on request, 2 datasets cited

[28153] doi:10.1038/s41467-024-47712-8 [paper, repository]

Identifying tumor type and cell type-specific gene expression alterations in pediatric central nervous system tumors.

Journal: Nature communications

Authors' code: alexslemonade/alsf-scpca (BSD-3-Clause), sarahmklee/IntegrativePCNS (no license)

Status: code verified, 48 files readable, 2 matches

[28154] doi:10.1038/s41467-024-47964-4 [paper, data]

Optochemical control of slow-wave sleep in the nucleus accumbens of male mice by a photoactivatable allosteric modulator of adenosine A_2A receptors.

Journal: Nature communications

Status: data only, 1 dataset cited

[28155] doi:10.1038/s41598-024-60707-1 [paper, repository]

Genetic-based patient stratification in Alzheimer's disease.

Journal: Scientific reports

Authors' code: laurahdezlorenzo/AD_genetics_stratification (MIT)

Status: code verified, 12 files readable, 8 matches

[28156] doi:10.1073/pnas.2317256121 [paper, repository]

Robust inference of causality in high-dimensional dynamical processes from the Information Imbalance of distance ranks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: vdeltatto/imbalance-gain-causality (GPL-3.0)

Status: code verified, 9 files readable

[28157] doi:10.1080/23273798.2024.2345302 [paper, repository]

Testing two-step models of negative quantification using a novel machine learning analysis of EEG.

Journal: Language, cognition and neuroscience

Authors' code: OSF z49me (no license), talar.sfb833.uni-tuebingen.de/erdora/cmdi (no license), OSF 6amgu (no license)

Status: code verified, 44 files readable, 13 matches

[28158] doi:10.1093/pnasnexus/pgae145 [paper, repository]

Continuous tracking using deep learning-based decoding for noninvasive brain-computer interface.

Journal: PNAS nexus

Authors' code: bfinl (no license)

Status: code verified

[28159] doi:10.1136/jitc-2024-008967 [paper, data]

ScRNA-seq reveals novel immune-suppressive T cells and investigates CMV-TCR-T cells cytotoxicity against GBM.

Journal: Journal for immunotherapy of cancer

Status: data only, 1 dataset cited

[28160] doi:10.1186/s12888-024-05650-1 [paper, data]

The efficacy of real versus sham external Trigeminal Nerve Stimulation (eTNS) in youth with Attention-Deficit/Hyperactivity Disorder (ADHD) over 4 weeks: a protocol for a multi-centre, double-blind, randomized, parallel-group, phase IIb study (ATTENS).

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[28161] doi:10.1186/s12911-024-02519-x [paper, data]

Advanced AI-driven approach for enhanced brain tumor detection from MRI images utilizing EfficientNetB2 with equalization and homomorphic filtering.

Journal: BMC medical informatics and decision making

Status: data only, 3 datasets cited

[28162] doi:10.1242/jcs.261737 [paper, repository]

Efficient axonal transport of endolysosomes relies on the balanced ratio of microtubule tyrosination and detyrosination.

Journal: Journal of cell science

Authors' code: HU-Berlin-Optobiology/AIS-project (no license), cleterrier/process_profiles (no license)

Status: code verified, 19 files readable, 2 matches

[28163] doi:10.1242/jeb.246785 [paper, data]

Effects of microRNA-305 knockdown on brain gene expression associated with division of labor in honey bee colonies (Apis mellifera).

Journal: The Journal of experimental biology

Status: data only, 1 dataset cited

[28164] doi:10.12771/emj.2024.e23 [paper, data]

An accurate pediatric bone age prediction model using deep learning and contrast conversion.

Journal: Ewha medical journal

Status: data only, 1 dataset cited

[28165] doi:10.1371/journal.pbio.3002607 [paper, repository]

Brain high-throughput multi-omics data reveal molecular heterogeneity in Alzheimer's disease.

Journal: PLoS biology

Authors' code: Zenodo 10729969 (CC-BY-4.0), HarariLab/RNA-Seq-Pipeline (no license), broadinstitute/gtex-pipeline (BSD-3-Clause)

Status: code verified, 94 files readable, 20 matches

[28166] doi:10.1371/journal.pone.0302280 [paper, data]

Small peptide CSF fingerprint of amyotrophic lateral sclerosis.

Journal: PloS one

Status: data only, 1 dataset cited

[28167] doi:10.3389/fneur.2024.1361063 [paper, repository]

Hypo-connectivity of the primary somatosensory cortex in Parkinson's disease: a resting-state functional MRI study.

Journal: Frontiers in neurology

Authors' code: danizoeller/myPLS (GPL-2.0)

Status: code verified, 37 files readable, 4 matches

[28168] doi:10.3389/fnins.2024.1375265 [paper, repository]

Non-motor symptoms associated with progressive loss of dopaminergic neurons in a mouse model of Parkinson's disease.

Journal: Frontiers in neuroscience

Authors' code: annaradli/tif-pd-behavior (no license)

Status: code verified, 21 files readable, 8 matches

[28169] doi:10.3390/brainsci14050450 [paper, repository]

Investigating Descending Pain Regulation in Fibromyalgia and the Link to Altered Autonomic Regulation by Means of Functional MRI Data.

Journal: Brain sciences

Authors' code: stromanp/pantheon-fMRI (no license)

Status: code verified, 32 files readable, 7 matches

[28170] doi:10.3390/diagnostics14090940 [paper, data]

Inferior Frontal Sulcal Hyperintensities on Brain MRI Are Associated with Amyloid Positivity beyond Age-Results from the Multicentre Observational DELCODE Study.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[28171] doi:10.3390/s24092857 [paper, repository]

Identifying the Effect of Cognitive Motivation with the Method Based on Temporal Association Rule Mining Concept.

Journal: Sensors (Basel, Switzerland)

Authors' code: drive.google.com/drive/folders (no license)

Status: code verified

[28172] doi:10.3390/s24092863 [paper, data]

Calibrating Deep Learning Classifiers for Patient-Independent Electroencephalogram Seizure Forecasting.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[28173] doi:10.3758/s13415-024-01188-7 [paper]

The involvement of rTPJ in intention attribution during social decision making: A TMS study.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request

[28174] doi:10.3758/s13423-024-02511-6 [paper, repository]

Neural representation of phonological wordform in temporal cortex.

Journal: Psychonomic bulletin & review

Authors' code: nmr.mgh.harvard.edu/software/gps (no license), csie.ntu.edu.tw/~cjlin/libsvm (no license)

Status: code verified

[28175] doi:10.7554/elife.90080 [paper, data]

Aberrant cortical activity, functional connectivity, and neural assembly architecture after photothrombotic stroke in mice.

Journal: eLife

Status: data only, 1 dataset cited

[28176] doi:10.7554/elife.90960 [paper, repository]

Similar excitability through different sodium channels and implications for the analgesic efficacy of selective drugs.

Journal: eLife

Authors' code: modeldb:2016663 (no license), supp:PMC11060714/elife-90960-code1.zip (no license)

Status: code verified, 2 files readable, 4 matches

[28177] doi:10.7554/elife.91927 [paper, repository]

Conditional chemoconnectomics (cCCTomics) as a strategy for efficient and conditional targeting of chemical transmission.

Journal: eLife

Authors' code: supp:PMC11060718/elife-91927-code1.zip (no license)

Status: empty repository

Monday, 29 April 2024 (28 papers)

[28178] doi:10.1007/s00432-024-05718-1 [paper, data]

Two-headed UNetEfficientNets for parallel execution of segmentation and classification of brain tumors: incorporating postprocessing techniques with connected component labelling.

Journal: Journal of cancer research and clinical oncology

Status: data only, 2 datasets cited

[28179] doi:10.1016/j.isci.2024.109844 [paper, repository]

Reward-related regions play a role in natural story comprehension.

Journal: iScience

Authors' code: orenpapers/Reward_Predictability_Paper (no license)

Status: code verified, 27 files readable, 1 match

[28180] doi:10.1016/j.nicl.2024.103611 [paper, repository]

LST-AI: A deep learning ensemble for accurate MS lesion segmentation.

Journal: NeuroImage. Clinical

Authors' code: CompImg/LST-AI (MIT)

Status: code verified, 31 files readable, 10 matches

[28181] doi:10.1017/s1049023x24000359 [paper, data]

Brain Injury Associated Shock: An Under-Recognized and Challenging Prehospital Phenomenon.

Journal: Prehospital and disaster medicine

Status: data only, 1 dataset cited

[28182] doi:10.1038/s41419-024-06692-9 [paper, data]

Mature neurons from iPSCs unveil neurodegeneration-related pathways in mucopolysaccharidosis type II: GSK-3β inhibition for therapeutic potential.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[28183] doi:10.1038/s41467-024-47985-z [paper, repository]

VC-resist glioblastoma cell state: vessel co-option as a key driver of chemoradiation resistance.

Journal: Nature communications

Authors' code: bioinfo-pf-curie/RNA-seq (CECILL-2.1), bioinfo-pf-curie/myproms (CECILL-2.1), casecpb/KSEAapp (other)

Status: code verified, 115 files readable, 5 matches

[28184] doi:10.1038/s41562-024-01855-2 [paper, data]

The role of the human hippocampus in decision-making under uncertainty.

Journal: Nature human behaviour

Status: data only, 1 dataset cited

[28185] doi:10.1038/s41593-024-01631-5 [paper, repository]

Feature-selective responses in macaque visual cortex follow eye movements during natural vision.

Journal: Nature neuroscience

Authors' code: willwx/free_viewing (no license)

Status: code verified, 114 files readable, 3 matches

[28186] doi:10.1038/s41593-024-01635-1 [paper]

Abstract deliberation by visuomotor neurons in prefrontal cortex.

Journal: Nature neuroscience

Status: code on request

[28187] doi:10.1038/s41598-024-60796-y [paper, data]

ZleepAnlystNet: a novel deep learning model for automatic sleep stage scoring based on single-channel raw EEG data using separating training.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28188] doi:10.1038/s44319-024-00140-7 [paper, data]

Glucose hypometabolism prompts RAN translation and exacerbates C9orf72-related ALS/FTD phenotypes.

Journal: EMBO reports

Status: data only, 1 dataset cited

[28189] doi:10.1073/pnas.2307156121 [paper, repository]

Human mutations in high-confidence Tourette disorder genes affect sensorimotor behavior, reward learning, and striatal dopamine in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10974583 (CC-BY-4.0), Zenodo 10480907 (CC-BY-4.0), Zenodo 10974571 (CC-BY-4.0), Zenodo 10480885 (CC-BY-4.0), tischfieldlab/moseq2-lda (no license), tischfieldlab/moseq-reports (MIT), tischfieldlab/med-associates-utils (BSD-3-Clause)

Status: code verified, 254 files readable, 2 matches

[28190] doi:10.1073/pnas.2311685121 [paper, data]

A time-resolved single-cell roadmap of the logic driving anterior neural crest diversification from neural border to migration stages.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[28191] doi:10.1093/braincomms/fcae150 [paper, data]

Magnetoencephalography-derived oscillatory microstate patterns across lifespan: the Cambridge centre for ageing and neuroscience cohort.

Journal: Brain communications

Status: data only, 1 dataset cited

[28192] doi:10.1093/braincomms/fcae152 [paper, repository]

Spike-induced cytoarchitectonic changes in epileptic human cortex are reduced via MAP2K inhibition.

Journal: Brain communications

Authors' code: Zenodo 8267391 (MIT)

Status: code verified, 4 files readable, 1 match

[28193] doi:10.1093/braincomms/fcae154 [paper, repository]

Resting-state functional connectivity in children cooled for neonatal encephalopathy.

Journal: Brain communications

Authors' code: apcspencer/dFC_DimReduction (no license)

Status: code verified, 12 files readable, 6 matches

[28194] doi:10.1093/pnasnexus/pgae179 [paper, data]

Neuroinflammation generated by HIV-infected microglia promotes dysfunction and death of neurons in human brain organoids.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[28195] doi:10.1155/2024/6347920 [paper, data]

ContourTL-Net: Contour-Based Transfer Learning Algorithm for Early-Stage Brain Tumor Detection.

Journal: International journal of biomedical imaging

Status: data only, 2 datasets cited

[28196] doi:10.1186/s12880-024-01283-8 [paper, data]

Detection of Marchiafava Bignami disease using distinct deep learning techniques in medical diagnostics.

Journal: BMC medical imaging

Status: data only, 3 datasets cited

[28197] doi:10.1371/journal.pbio.3002586 [paper, data]

Developmental fine-tuning of medial superior olive neurons mitigates their predisposition to contralateral sound sources.

Journal: PLoS biology

Status: data only, 1 dataset cited

[28198] doi:10.1371/journal.pcbi.1011964 [paper, repository]

Ensemble learning and ground-truth validation of synaptic connectivity inferred from spike trains.

Journal: PLoS computational biology

Authors' code: christiando/spycon (MIT), renkulab.io/projects/christian.donner (no license)

Status: code verified, 26 files readable, 4 matches

[28199] doi:10.1371/journal.pcbi.1012030 [paper, repository]

Recurrent neural networks that learn multi-step visual routines with reinforcement learning.

Journal: PLoS computational biology

Authors' code: samimol/Visual-Routines (no license)

Status: code verified, 7 files readable

[28200] doi:10.1371/journal.pone.0301355 [paper, data]

Neurotherapeutic effects of quercetin-loaded nanoparticles and Biochanin-A extracted from Trifolium alexandrinum on PI3K/Akt/GSK-3β signaling in the cerebral cortex of male diabetic rats.

Journal: PloS one

Status: data only, 1 dataset cited

[28201] doi:10.3389/fneur.2024.1375723 [paper, repository]

Causal effects of immune cells in glioblastoma: a Bayesian Mendelian Randomization study.

Journal: Frontiers in neurology

Authors' code: chr1swallace.github.io/coloc (no license)

Status: code verified

[28202] doi:10.3389/fpsyt.2024.1349989 [paper, data]

Selective disrupted gray matter volume covariance of amygdala subregions in schizophrenia.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[28203] doi:10.3390/brainsci14050442 [paper, data]

Identifying Effective Connectivity between Stochastic Neurons with Variable-Length Memory Using a Transfer Entropy Rate Estimator.

Journal: Brain sciences

Status: data only, 1 dataset cited

[28204] doi:10.3390/ijms25094837 [paper]

Early Blood-Brain Barrier Impairment as a Pathological Hallmark in a Novel Model of Closed-Head Concussive Brain Injury (CBI) in Mice.

Journal: International journal of molecular sciences

Status: code on request

[28205] doi:10.7554/elife.91019 [paper, repository]

A new 'CFS tracking' paradigm reveals uniform suppression depth regardless of target complexity or salience.

Journal: eLife

Authors' code: OSF nzp9v (no license), Davidson-MJ/tCFS-elife-VOR (MIT)

Status: code verified, 22 files readable, 4 matches

Sunday, 28 April 2024 (2 papers)

[28206] doi:10.1016/j.mex.2024.102738 [paper, repository]

MAN-C: A masked autoencoder neural cryptography based encryption scheme for CT scan images.

Journal: MethodsX

Authors' code: facebookresearch/mae (CC-BY-NC-4.0)

Status: code verified, 20 files readable, 2 matches

[28207] doi:10.3390/cancers16091723 [paper, data]

Integration of Computational Pipeline to Streamline Efficacious Drug Nomination and Biomarker Discovery in Glioblastoma.

Journal: Cancers

Status: data only, 2 datasets cited

Saturday, 27 April 2024 (12 papers)

[28208] doi:10.1002/alz.13851 [paper, data]

Metabolomics profiling reveals distinct, sex-specific signatures in serum and brain metabolomes in mouse models of Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[28209] doi:10.1016/j.dcn.2024.101388 [paper, repository]

NowIKnowMyABCD: A global resource hub for researchers using data from the ABCD Study.

Journal: Developmental cognitive neuroscience

Authors' code: now-i-know-my-abcd/docs (no license), now-i-know-my-abcd (no license)

Status: code verified, 10 files readable, 2 matches

[28210] doi:10.1016/j.heliyon.2024.e30469 [paper, repository]

Gamifying cell culture training: The 'Seru-Otchi' experience for undergraduates.

Journal: Heliyon

Authors' code: braingeneers/seruotchi-supplement (no license)

Status: code verified

[28211] doi:10.1016/j.xpro.2024.103027 [paper, data]

Protocol for recording neural activity evoked by electrical stimulation in mice using two-photon calcium imaging.

Journal: STAR protocols

Status: data only, 1 dataset cited

[28212] doi:10.1016/j.xpro.2024.103035 [paper, repository]

Protocol to measure monosynaptic connections between different cortical regions in mice using cell-pair cross correlogram of spike events.

Journal: STAR protocols

Authors' code: matildebalbilab/Cong_STARProtocol (no license), Zenodo 10846823 (CC-BY-4.0), matildebalbilab/starprotocol_wangetal2024 (no license)

Status: code verified, 17 files readable, 4 matches

[28213] doi:10.1038/s41380-024-02575-9 [paper, repository]

Psilocybin restrains activity-based anorexia in female rats by enhancing cognitive flexibility: contributions from 5-HT1A and 5-HT2A receptor mechanisms.

Journal: Molecular psychiatry

Authors' code: KravitzLabDevices/FED3 (GPL-3.0), Foldi-Lab/LKM_FED3-tasks (GPL-3.0)

Status: code verified, 10 files readable

[28214] doi:10.1038/s41467-024-47934-w [paper, repository]

Linear interaction between replication and transcription shapes DNA break dynamics at recurrent DNA break Clusters.

Journal: Nature communications

Authors' code: ClaireMarchal/High-Res_repli-seq_Features (no license), Zenodo 10832658 (CC-BY-4.0), brainbreaks/HTGTS (no license), Zenodo 10843397 (CC-BY-4.0), brainbreaks/dsb_paper (no license)

Status: code verified, 124 files readable, 7 matches

[28215] doi:10.1038/s41598-024-60328-8 [paper, repository]

Prediction-error-dependent processing of immediate and delayed positive feedback.

Journal: Scientific reports

Authors' code: coweb101/fbdelaype (no license)

Status: code verified, 2 files readable, 6 matches

[28216] doi:10.1038/s42003-024-06151-3 [paper]

Human local field potentials in motor and non-motor brain areas encode upcoming movement direction.

Journal: Communications biology

Status: code on request

[28217] doi:10.1111/jsr.14226 [paper, data]

Perivascular space diffusivity and brain microstructural measures are associated with circadian time and sleep quality.

Journal: Journal of sleep research

Status: data only, 1 dataset cited

[28218] doi:10.1186/s12866-024-03279-4 [paper, data]

Connection of pre-competition anxiety with gut microbiota and metabolites in wrestlers with varying sports performances based on brain-gut axis theory.

Journal: BMC microbiology

Status: data only, 1 dataset cited

[28219] doi:10.3390/brainsci14050435 [paper, repository]

Methamphetamine and the Synthetic Cathinone 3,4-Methylenedioxypyrovalerone (MDPV) Produce Persistent Effects on Prefrontal and Striatal Microglial Morphology and Neuroimmune Signaling Following Repeated Binge-like Intake in Male and Female Rats.

Journal: Brain sciences

Authors' code: ElisaYork/3DMorph (MIT)

Status: code verified, 56 files readable, 2 matches

Friday, 26 April 2024 (35 papers, 5 on this page)

[28220] doi:10.1007/s11357-024-01148-6 [paper, repository]

Multimodal brain age prediction using machine learning: combining structural MRI and 5-HT2AR PET-derived features.

Journal: GeroScience

Authors' code: RDoerfel/bap2a-public (MIT)

Status: code verified, 56 files readable, 4 matches

[28221] doi:10.1016/j.bpsgos.2024.100323 [paper, repository]

Distinct Longitudinal Brain White Matter Microstructure Changes and Associated Polygenic Risk of Common Psychiatric Disorders and Alzheimer's Disease in the UK Biobank.

Journal: Biological psychiatry global open science

Authors' code: ekaden/smt (BSD-2-Clause), MaxKorbmacher/Long_Diffusion (no license)

Status: code verified, 44 files readable, 4 matches

[28222] doi:10.1016/j.brainresbull.2024.110958 [paper, repository]

Reading instruction causes changes in category-selective visual cortex.

Journal: Brain research bulletin

Authors' code: LABSN/expyfun (BSD-3-Clause), yeatmanlab/preK-MEG (no license), purl.stanford.edu/xg041gv8944 (no license)

Status: code verified, 176 files readable, 7 matches

[28223] doi:10.1016/j.celrep.2024.114112 [paper]

Focal clusters of peri-synaptic matrix contribute to activity-dependent plasticity and memory in mice.

Journal: Cell reports

Status: code on request

[28224] doi:10.1016/j.celrep.2024.114157 [paper, repository]

Higher-order thalamocortical circuits are specified by embryonic cortical progenitor types in the mouse brain.

Journal: Cell reports

Authors' code: cortex-lab/phy (BSD-3-Clause)

Status: code verified, 165 files readable, 1 match

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