Every paper, by date: page 127

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 127 of 200: 26 April 2024 to 17 April 2024.

Friday, 26 April 2024 (35 papers, 30 on this page)

[28225] doi:10.1016/j.heliyon.2024.e30204 [paper, data]

miR-153 promotes neural differentiation by activating the cell adhesion/Ca²⁺ signaling pathway and targeting ion channel activity in HT-22 cells by bioinformatic analysis.

Journal: Heliyon

Status: data only, 7 datasets cited

[28226] doi:10.1016/j.heliyon.2024.e30270 [paper, repository]

Deep multiscale convolutional feature learning for intracranial hemorrhage classification and weakly supervised localization.

Journal: Heliyon

Authors' code: kaggle.com/competitions/rsna-intracranial-hemorrhage-detection (no license)

Status: dead link

[28227] doi:10.1016/j.heliyon.2024.e30354 [paper, data]

Sex-based differences in brain morphometry under chronic stress: A pilot MRI study.

Journal: Heliyon

Status: data only, 1 dataset cited

[28228] doi:10.1016/j.isci.2024.109820 [paper]

Localizing 3D motion through the fingertips: Following in the footsteps of elephants.

Journal: iScience

Status: code on request

[28229] doi:10.1016/j.isci.2024.109832 [paper, repository]

Spatial navigation questionnaires as a supportive diagnostic tool in early Alzheimer's disease.

Journal: iScience

Authors' code: OSF q25gh (no license)

Status: code verified, 1 file readable, 3 matches

[28230] doi:10.1016/j.jbc.2024.107326 [paper, data]

Milligram-scale assembly and NMR fingerprint of tau fibrils adopting the Alzheimer's disease fold.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[28231] doi:10.1038/s41467-024-47860-x [paper, repository]

Human connectome topology directs cortical traveling waves and shapes frequency gradients.

Journal: Nature communications

Authors' code: OSF daq54 (no license)

Status: code verified, 135 files readable, 40 matches

[28232] doi:10.1038/s41467-024-47933-x [paper, repository]

Single-cell analyses reveal transient retinal progenitor cells in the ciliary margin of developing human retina.

Journal: Nature communications

Authors' code: RachelQueen1/BBSRC_Retina (MIT), Zenodo 10599556 (CC-BY-4.0), Zenodo 10625678 (CC-BY-4.0)

Status: code verified, 172 files readable, 24 matches

[28233] doi:10.1038/s41598-024-60277-2 [paper, repository]

Online speech synthesis using a chronically implanted brain-computer interface in an individual with ALS.

Journal: Scientific reports

Authors' code: cronelab/delayed-speech-synthesis (MIT), iscoe/ezmsg (MIT)

Status: code verified, 164 files readable, 13 matches

[28234] doi:10.1038/s41598-024-60311-3 [paper, repository]

Accelerated epigenetic age is associated with whole-brain functional connectivity and impaired cognitive performance in older adults.

Journal: Scientific reports

Authors' code: andrew-graves/ageaccelgrim_cog_brain (MIT)

Status: code verified, 3 files readable, 8 matches

[28235] doi:10.1038/s41598-024-60389-9 [paper, data]

A systematic review of animal and human data comparing the nasal potential difference test between cystic fibrosis and control.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28236] doi:10.1038/s42003-024-06207-4 [paper, repository]

GWAS meta-analysis reveals key risk loci in essential tremor pathogenesis.

Journal: Communications biology

Authors' code: DecodeGenetics/graphtyper (MIT), DecodeGenetics/svimmer (no license), pachterlab.github.io/kallisto (no license), davidaknowles.github.io/leafcutter (no license), bulik/ldsc (GPL-3.0), stephenturner/qqman (GPL-3.0)

Status: code verified, 118 files readable, 2 matches

[28237] doi:10.1117/1.nph.11.2.025002 [paper]

Using spectral derivatives to remove the influence of hair on optical images of the static absorbing properties of tissue-like turbid media.

Journal: Neurophotonics

Status: code on request

[28238] doi:10.1126/sciadv.adj9303 [paper, repository]

Low-dimensional criticality embedded in high-dimensional awake brain dynamics.

Journal: Science advances

Authors' code: figshare 24530434 (CC-BY-4.0)

Status: code verified, 2 files readable

[28239] doi:10.1162/imag_a_00144 [paper, data]

Objective QC for diffusion MRI data: Artefact detection using normative modelling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 2 datasets cited

[28240] doi:10.1162/imag_a_00145 [paper]

Dimensions of early life adversity and their associations with functional brain organisation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[28241] doi:10.1162/imag_a_00146 [paper]

Changes in high-frequency aperiodic 1/f slope and periodic activity reflect post-stimulus functional inhibition in the visual cortex.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[28242] doi:10.1162/imag_a_00148 [paper, repository]

Improving auditory attention decoding by classifying intracranial responses to glimpsed and masked acoustic events.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: naplab.ee.columbia.edu/naplib.html (no license), naplib-python.readthedocs.io (no license)

Status: code verified

[28243] doi:10.1162/imag_a_00150 [paper]

Theta activity discriminates high-level, species-specific body processes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[28244] doi:10.1162/imag_a_00152 [paper, repository]

Visual cortical area contributions to the transient, multifocal and steady-state VEP: A forward model-informed analysis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF gx8vm (no license)

Status: code verified, 144 files readable, 13 matches

[28245] doi:10.1186/s13059-024-03249-z [paper, repository]

hadge: a comprehensive pipeline for donor deconvolution in single-cell studies.

Journal: Genome biology

Authors' code: theislab/hadge-reproducibility (MIT), theislab/hadge (MIT), Zenodo 10891138 (CC-BY-4.0)

Status: code verified, 55 files readable, 23 matches

[28246] doi:10.1371/journal.pcbi.1011589 [paper, repository]

Learning spatio-temporal patterns with Neural Cellular Automata.

Journal: PLoS computational biology

Authors' code: AlexDR1998/NCA (no license), googlefonts/noto-emoji (MIT)

Status: code verified, 83 files readable, 10 matches

[28247] doi:10.1371/journal.pcbi.1011975 [paper, repository]

Bayesian inference of structured latent spaces from neural population activity with the orthogonal stochastic linear mixing model.

Journal: PLoS computational biology

Authors' code: BouchardLab/Orthogonal-Stochastic-Linear-Mixing-Model (MIT)

Status: code verified, 8 files readable

[28248] doi:10.1371/journal.pone.0298740 [paper, data]

Involvement of the anterior insula and frontal operculum during wh-question comprehension of wh-in-situ Korean language.

Journal: PloS one

Status: data only, 1 dataset cited

[28249] doi:10.1523/eneuro.0180-23.2024 [paper, repository]

Theta Phase Entrainment of Single-Cell Spiking in Rat Somatosensory Barrel Cortex and Secondary Visual Cortex Is Enhanced during Multisensory Discrimination Behavior.

Journal: eNeuro

Authors' code: Truikes/vita-lfp (no license)

Status: code verified, 16 files readable, 2 matches

[28250] doi:10.3389/adar.2024.12528 [paper, data]

Effects of repeated alcohol abstinence on within-subject prefrontal cortical gene expression in rhesus macaques.

Journal: Advances in drug and alcohol research

Status: data only, 1 dataset cited

[28251] doi:10.3389/fnagi.2024.1369522 [paper, repository]

CSF pulsations measured in Parkinson's disease patients using EPI-based fMRI data.

Journal: Frontiers in aging neuroscience

Authors' code: KAIST-MRI-Lab/JunheeKim (MIT)

Status: code verified, 12 files readable

[28252] doi:10.3389/fnins.2024.1329411 [paper, repository]

Machine learning for hand pose classification from phasic and tonic EMG signals during bimanual activities in virtual reality.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 10049799 (CC-BY-4.0), cedricsimar/livehandposevisualisation (MIT)

Status: code verified, 80 files readable

[28253] doi:10.3389/fnins.2024.1394681 [paper, repository]

Short fiber bundle filtering and test-retest reproducibility of the Superficial White Matter.

Journal: Frontiers in neuroscience

Authors' code: cmendosanchez/EnhancedSWM (GPL-3.0)

Status: code verified, 7 files readable, 1 match

[28254] doi:10.3390/life14050562 [paper, repository]

microRNA and the Post-Transcriptional Response to Oxidative Stress during Neuronal Differentiation: Implications for Neurodevelopmental and Psychiatric Disorders.

Journal: Life (Basel, Switzerland)

Authors' code: bioconductor.org/packages/release (no license)

Status: code verified

Thursday, 25 April 2024 (40 papers)

[28255] doi:10.1007/s00702-024-02776-0 [paper, repository]

Altered domain-specific striatal functional connectivity in patients with Parkinson's disease and urinary symptoms.

Journal: Journal of neural transmission (Vienna, Austria : 1996)

Authors' code: neuroelf.org (no license)

Status: code found, still to be checked

[28256] doi:10.1016/j.dcn.2024.101387 [paper, repository]

Infant attachment does not depend on neonatal amygdala and hippocampal structure and connectivity.

Journal: Developmental cognitive neuroscience

Authors' code: git.ecdf.ed.ac.uk/jbrl/amy-hip-attachment (no license)

Status: code found, still to be checked

[28257] doi:10.1016/j.isci.2024.109815 [paper, data]

Unsupervised clustering identified clinically relevant metabolic syndrome endotypes in UK and Taiwan Biobanks.

Journal: iScience

Status: data only, 1 dataset cited

[28258] doi:10.1016/j.media.2024.103186 [paper, repository]

Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study.

Journal: Medical image analysis

Authors' code: medical-Image-Analysis-Laboratory (no license)

Status: code verified

[28259] doi:10.1016/j.nicl.2024.103610 [paper, repository]

Cortical and subcortical functional connectivity and cognitive impairment in Parkinson's disease.

Journal: NeuroImage. Clinical

Authors' code: narayanan.lab.uiowa.edu (no license)

Status: code verified

[28260] doi:10.1016/j.omton.2024.200808 [paper, data]

BRAF V600E in a preclinical model of pleomorphic Xanthoastrocytoma: Analysis of the tumor microenvironment and immune cell infiltration dynamics <i>in vivo</i>.

Journal: Molecular therapy. Oncology

Status: code on request, 1 dataset cited

[28261] doi:10.1016/j.xcrm.2024.101534 [paper, repository]

Restoring thalamocortical circuit dysfunction by correcting HCN channelopathy in Shank3 mutant mice.

Journal: Cell reports. Medicine

Authors' code: adredish/MClust-Spike-Sorting-Toolbox (GPL-3.0)

Status: code verified, 199 files readable

[28262] doi:10.1038/s41380-024-02537-1 [paper]

Resolution of tonic concentrations of highly similar neurotransmitters using voltammetry and deep learning.

Journal: Molecular psychiatry

Status: code on request

[28263] doi:10.1038/s41398-024-02903-1 [paper, repository]

Multimodal workflows optimally predict response to repetitive transcranial magnetic stimulation in patients with schizophrenia: a multisite machine learning analysis.

Journal: Translational psychiatry

Authors' code: proniapredictors.eu (no license), neurominer-git/NeuroMiner_1.1 (no license)

Status: code verified, 2,000 files readable, 6 matches

[28264] doi:10.1038/s41467-024-47465-4 [paper, repository]

Dietary L-Glu sensing by enteroendocrine cells adjusts food intake via modulating gut PYY/NPF secretion.

Journal: Nature communications

Authors' code: figshare 13451204 (CC-BY-4.0)

Status: code verified

[28265] doi:10.1038/s41467-024-47748-w [paper, repository]

Functional connectivity development along the sensorimotor-association axis enhances the cortical hierarchy.

Journal: Nature communications

Authors' code: PennLINC/network_replication (MIT), OSF vf8ew (no license), Zenodo 10826381 (CC-BY-4.0)

Status: code verified, 202 files readable, 18 matches

[28266] doi:10.1038/s41467-024-47863-8 [paper, data]

Dynamic corticothalamic modulation of the somatosensory thalamocortical circuit during wakefulness.

Journal: Nature communications

Status: data only, 1 dataset cited

[28267] doi:10.1038/s41467-024-47883-4 [paper, repository]

Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections.

Journal: Nature communications

Authors' code: kstouff4/xIV-LDDMM-Particle (MIT), kstouff4/MeshLDDMMQP (Apache-2.0)

Status: code verified, 250 files readable, 5 matches

[28268] doi:10.1038/s41467-024-47892-3 [paper, repository]

Cortex-wide transcranial localization microscopy with fluorescently labeled red blood cells.

Journal: Nature communications

Authors' code: Zenodo 10663497 (CC-BY-4.0)

Status: code verified, 2 files readable

[28269] doi:10.1038/s41467-024-47988-w [paper, repository]

Control of polymers' amorphous-crystalline transition enables miniaturization and multifunctional integration for hydrogel bioelectronics.

Journal: Nature communications

Authors' code: neurobiologylab (no license)

Status: code verified

[28270] doi:10.1038/s41597-024-03267-3 [paper, data]

Normative volumes and relaxation times at 3T during brain development.

Journal: Scientific data

Status: data only, 3 datasets cited

[28271] doi:10.1038/s41598-024-59566-7 [paper, data]

Automatic brain-tumor diagnosis using cascaded deep convolutional neural networks with symmetric U-Net and asymmetric residual-blocks.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28272] doi:10.1038/s41598-024-59699-9 [paper, repository]

Insights into the genetic architecture of cerebellar lobules derived from the UK Biobank.

Journal: Scientific reports

Authors' code: bulik/ldsc (GPL-3.0), amaiacc/MS-cerebellum-UKB (no license)

Status: code verified, 72 files readable, 28 matches

[28273] doi:10.1038/s41598-024-60050-5 [paper, repository]

Investigating underlying brain structures and influence of mild and subjective cognitive impairment on dual-task performance in people with Parkinson's disease.

Journal: Scientific reports

Authors' code: OSF yw34j (no license)

Status: code found, still to be checked

[28274] doi:10.1101/gr.278590.123 [paper, repository]

Systematic identification and characterization of exon-intron circRNAs.

Journal: Genome research

Authors' code: xjyx/FEICP (GPL-2.0)

Status: code verified, 10 files readable, 1 match

[28275] doi:10.1159/000539023 [paper, repository]

Left OFC Activation in Functional Near-Infrared Spectroscopy during an Inhibitory Control Task in an Early Years Sample: Integrating Stress Responses with Cognitive Function and Brain Activation.

Journal: Developmental neuroscience

Authors' code: nirx/fOLD-public (no license)

Status: empty repository, 1 file readable

[28276] doi:10.1162/imag_a_00122 [paper, repository]

Functional MRI brain state occupancy in the presence of cerebral small vessel disease <b>-</b> a pre-registered replication analysis of the Hamburg City Health Study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: csi-hamburg/HCHS-brain-states-RR (no license), Zenodo 7337577 (CC-BY-4.0)

Status: code verified, 22 files readable, 7 matches

[28277] doi:10.1162/imag_a_00139 [paper]

FAT1 weighted MRI: Diffusion meets anatomical imaging and application in thalamic surgery for tremor.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[28278] doi:10.1172/jci175205 [paper, data]

Type 2 cannabinoid receptor expression on microglial cells regulates neuroinflammation during graft-versus-host disease.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[28279] doi:10.1186/s12888-024-05646-x [paper, data]

The impact of spectral basis set composition on estimated levels of cingulate glutamate and its associations with different personality traits.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[28280] doi:10.1186/s12915-024-01888-z [paper, data]

Dysregulation of innate immune signaling in animal models of spinal muscular atrophy.

Journal: BMC biology

Status: data only, 6 datasets cited

[28281] doi:10.1186/s12964-024-01617-7 [paper, data]

MSC-derived mitochondria promote axonal regeneration via Atf3 gene up-regulation by ROS induced DNA double strand breaks at transcription initiation region.

Journal: Cell communication and signaling : CCS

Status: data only, 1 dataset cited

[28282] doi:10.1186/s13148-024-01672-4 [paper, data]

DNA methylation of imprint control regions associated with Alzheimer's disease in non-Hispanic Blacks and non-Hispanic Whites.

Journal: Clinical epigenetics

Status: data only, 2 datasets cited

[28283] doi:10.1186/s42494-024-00160-9 [paper, data]

Autophagy-related genes in mesial temporal lobe epilepsy: an integrated bioinformatics analysis.

Journal: Acta epileptologica

Status: data only, 1 dataset cited

[28284] doi:10.1371/journal.pcbi.1011152 [paper, repository]

Method for cycle detection in sparse, irregularly sampled, long-term neuro-behavioral timeseries: Basis pursuit denoising with polynomial detrending of long-term, inter-ictal epileptiform activity.

Journal: PLoS computational biology

Authors' code: irenabalzekas/BPWP (no license)

Status: code verified, 17 files readable, 5 matches

[28285] doi:10.1371/journal.pcbi.1011954 [paper, repository]

Emergent neural dynamics and geometry for generalization in a transitive inference task.

Journal: PLoS computational biology

Authors' code: kaykenneth/emergent_transitive (GPL-3.0)

Status: code verified, 14 files readable, 10 matches

[28286] doi:10.1371/journal.pgen.1011237 [paper, data]

Dendrite intercalation between epidermal cells tunes nociceptor sensitivity to mechanical stimuli in Drosophila larvae.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[28287] doi:10.1523/eneuro.0030-23.2024 [paper, repository]

Distinct Hippocampal Oscillation Dynamics in Trace Eyeblink Conditioning Task for Retrieval and Consolidation of Associations.

Journal: eNeuro

Authors' code: palvalab/palvalab (no license)

Status: empty repository, 1 file readable

[28288] doi:10.3389/fimmu.2024.1347415 [paper, data]

Exploring the common mechanism of vascular dementia and inflammatory bowel disease: a bioinformatics-based study.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[28289] doi:10.3390/biomedicines12050955 [paper, repository]

Exploring Motor Network Connectivity in State-Dependent Transcranial Magnetic Stimulation: A Proof-of-Concept Study.

Journal: Biomedicines

Authors' code: bnplab/causaldecoding (no license)

Status: code verified, 8 files readable

[28290] doi:10.3390/brainsci14050424 [paper, repository]

Introspection of UBNIN and Modified-UBNIN Algorithms for Structural MRI. Reply to Kelly et al. A Comparison of Brain-State Representations of Binary Neuroimaging Connectivity Data. Comment on "Samantaray et al. Unique Brain Network Identification Number for Parkinson's and Healthy Individuals Using Structural MRI. <i>Brain Sci.</i> 2023, <i>13</i>, 1297".

Journal: Brain sciences

Authors' code: NeuralLabIITGuwahati/Modified_UBNIN (GPL-3.0)

Status: code verified, 1 file readable

[28291] doi:10.3390/nu16091284 [paper, data]

The Association between Dietary Protein Intake and Sources and the Rate of Longitudinal Changes in Brain Structure.

Journal: Nutrients

Status: data only, 2 datasets cited

[28292] doi:10.7554/elife.89601 [paper, repository]

Episodic long-term memory formation during slow-wave sleep.

Journal: eLife

Authors' code: OSF ecvq8 (no license)

Status: code verified, 1 file readable

[28293] doi:10.7554/elife.90256 [paper, repository]

Emergence of brain-like mirror-symmetric viewpoint tuning in convolutional neural networks.

Journal: eLife

Authors' code: amirfarzmahdi/AL-Symmetry (MIT)

Status: code verified, 36 files readable, 16 matches

[28294] doi:10.7554/elife.92644 [paper, data]

Distinct transcriptomic profile of satellite cells contributes to preservation of neuromuscular junctions in extraocular muscles of ALS mice.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 24 April 2024 (31 papers)

[28295] doi:10.1002/advs.202401859 [paper, data]

On-Chip Neural Induction Boosts Neural Stem Cell Commitment: Toward a Pipeline for iPSC-Based Therapies.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[28296] doi:10.1007/s10571-024-01476-3 [paper, repository]

Association of Cadherin-Related Family Member 1 with Traumatic Brain Injury.

Journal: Cellular and molecular neurobiology

Authors' code: gwas.mrcieu.ac (no license)

Status: code found, still to be checked

[28297] doi:10.1007/s12021-024-09661-x [paper, repository]

Enhanced Spatial Fuzzy C-Means Algorithm for Brain Tissue Segmentation in T1 Images.

Journal: Neuroinformatics

Authors' code: BahramJafrasteh/esFCM (MIT)

Status: code verified, 8 files readable, 2 matches

[28298] doi:10.1016/j.nbd.2024.106512 [paper, repository]

Dopamine depletion weakens direct pathway modulation of SNr neurons.

Journal: Neurobiology of disease

Authors' code: jparker25/streac (no license)

Status: code verified, 10 files readable, 2 matches

[28299] doi:10.1038/s41386-024-01864-9 [paper, repository]

Effects of diazepam on hippocampal blood flow in people at clinical high risk for psychosis.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: figshare 24763839 (CC-BY-4.0)

Status: code verified, 2 files readable

[28300] doi:10.1038/s41398-024-02904-0 [paper]

Exercise mitigates a gut microbiota-mediated reduction in adult hippocampal neurogenesis and associated behaviours in rats.

Journal: Translational psychiatry

Status: code on request

[28301] doi:10.1038/s41467-024-47203-w [paper, repository]

Kalium channelrhodopsins effectively inhibit neurons.

Journal: Nature communications

Authors' code: Zenodo 10648742 (CC-BY-4.0)

Status: code verified

[28302] doi:10.1038/s41467-024-47747-x [paper, repository]

Altered grid-like coding in early blind people.

Journal: Nature communications

Authors' code: Zenodo 10694439 (CC-BY-4.0)

Status: code verified, 29 files readable, 19 matches

[28303] doi:10.1038/s41467-024-47877-2 [paper, repository]

Single cell tracing of Pomc neurons reveals recruitment of 'Ghost' subtypes with atypical identity in a mouse model of obesity.

Journal: Nature communications

Authors' code: bruening-lab/Heterogeneity_Scripts (no license)

Status: code verified, 3 files readable

[28304] doi:10.1038/s41586-024-07221-6 [paper, repository]

Whole-cortex in situ sequencing reveals input-dependent area identity.

Journal: Nature

Authors' code: shekharlab/mouseVC (no license), gillislab/barseq_analysis (no license)

Status: code verified, 38 files readable, 7 matches

[28305] doi:10.1038/s41597-024-03268-2 [paper, data]

A resting-state EEG dataset for sleep deprivation.

Journal: Scientific data

Status: data only, 2 datasets cited

[28306] doi:10.1038/s41598-024-59284-0 [paper, repository]

Effects of expectation on face perception and its association with expertise.

Journal: Scientific reports

Authors' code: OSF gmz8k (no license), fws252/Mares_etal_Cortex_2022 (GPL-3.0)

Status: code verified, 22 files readable, 12 matches

[28307] doi:10.1038/s42003-024-06155-z [paper, repository]

Multimodal joint deconvolution and integrative signature selection in proteomics.

Journal: Communications biology

Authors' code: yuepan027/micsqtl (no license)

Status: code verified, 13 files readable, 7 matches

[28308] doi:10.1038/s42003-024-06178-6 [paper, data]

C-C motif chemokine receptor 2 and 7 synergistically control inflammatory monocyte recruitment but the infecting virus dictates monocyte function in the brain.

Journal: Communications biology

Status: data only, 1 dataset cited

[28309] doi:10.1073/pnas.2322550121 [paper, repository]

Different states of synaptic vesicle priming explain target cell type-dependent differences in neurotransmitter release.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10960342 (CC-BY-4.0)

Status: code verified

[28310] doi:10.1093/pnasnexus/pgae141 [paper, repository]

Alteration of mechanical stresses in the murine brain by age and hemorrhagic stroke.

Journal: PNAS nexus

Authors' code: Zenodo 10737544 (CC-BY-4.0)

Status: code verified

[28311] doi:10.1093/radadv/umae010 [paper, repository]

Awake pediatric brain-MRI: a fast multi-sequence scan augmented with motion compensated single-shot 2D acquisitions.

Journal: Radiology advances

Authors' code: neuromr_karolinska/mocovisualisation (no license)

Status: code verified, 7 files readable

[28312] doi:10.1101/2024.04.23.24303268 [paper, repository]

The SLaM Brain Health Clinic: a remote biomarker enhanced memory clinic for patients with mild cognitive impairment within an NHS mental health trust

Journal: medRxiv (preprint)

Authors' code: OSF myuq7 (no license)

Status: code verified

[28313] doi:10.1109/access.2024.3393243 [paper, repository]

Sensitive Quantification of Cerebellar Speech Abnormalities Using Deep Learning Models.

Journal: IEEE access : practical innovations, open solutions

Authors' code: neuropheno-org/ieee_access_2023_ataxic_speech (BSD-3-Clause)

Status: code verified, 39 files readable, 3 matches

[28314] doi:10.1117/1.nph.11.2.025001 [paper, repository]

Functional near-infrared spectroscopy-based diagnosis support system for distinguishing between mild and severe depression using machine learning approaches.

Journal: Neurophotonics

Authors' code: liumanliu/fNIRS_depression (no license)

Status: code verified, 2 files readable, 3 matches

[28315] doi:10.1186/s13024-024-00725-9 [paper, data]

Regulation of human microglial gene expression and function via RNAase-H active antisense oligonucleotides in vivo in Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[28316] doi:10.1186/s40478-024-01764-5 [paper, repository]

Personalized identification and characterization of genome-wide gene expression differences between patient-matched intracranial and extracranial melanoma metastasis pairs.

Journal: Acta neuropathologica communications

Authors' code: TheresaKraft/MelBrainSys_expression (CC-BY-4.0)

Status: code verified, 11 files readable, 13 matches

[28317] doi:10.18632/aging.205764 [paper, data]

The association between neighborhood deprivation and DNA methylation in an autopsy cohort.

Journal: Aging

Status: data only, 1 dataset cited

[28318] doi:10.3389/fnins.2024.1341307 [paper, data]

Visual cortex anodal transcranial direct current stimulation does not alter reading performance for Chinese presented character-by-character to normal peripheral vision in older adults.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[28319] doi:10.3389/fnins.2024.1351341 [paper, repository]

Validating the reproducibility of a low-cost single-channel fNIRS device across hierarchical cognitive tasks.

Journal: Frontiers in neuroscience

Authors' code: OSF yrwaf (no license)

Status: code found, still to be checked

[28320] doi:10.3390/cells13090740 [paper, data]

Emerging Role of ABC Transporters in Glia Cells in Health and Diseases of the Central Nervous System.

Journal: Cells

Status: data only, 1 dataset cited

[28321] doi:10.3390/genes15050535 [paper, data]

Preservation of 5-Hydroxymethylcytosine Levels in <i>LRIG1</i> across Genomic DNA and Cell-Free DNA in Glioma Patients.

Journal: Genes

Status: data only, 1 dataset cited

[28322] doi:10.3390/ijms25094621 [paper, repository]

Reduced Expression of CLEC4G in Neurons Is Associated with Alzheimer's Disease.

Journal: International journal of molecular sciences

Authors' code: github-fxw/Feng.et-al.ijms (no license)

Status: empty repository, 1 file readable

[28323] doi:10.7554/elife.86725 [paper, repository]

Unifying network model links recency and central tendency biases in working memory.

Journal: eLife

Authors' code: vboboeva/parametricworkingmemory (no license), vboboeva/ParametricWorkingMemory_Data (no license), Zenodo 10592611 (CC-BY-4.0)

Status: code verified, 92 files readable, 2 matches

[28324] doi:10.7554/elife.92175 [paper, data]

Chronic intermittent hypoxia reveals role of the Postinspiratory Complex in the mediation of normal swallow production.

Journal: eLife

Status: data only, 1 dataset cited

[28325] doi:10.7717/peerj.17104 [paper, repository]

Rate dependent neural responses of interaural-time-difference cues in fine-structure and envelope.

Journal: PeerJ

Authors' code: Zenodo 7471961 (CC-BY-4.0)

Status: code verified

Tuesday, 23 April 2024 (17 papers)

[28326] doi:10.1016/j.celrep.2024.114140 [paper]

Sex-specific expression of distinct serotonin receptors mediates stress vulnerability of adult hippocampal neural stem cells in mice.

Journal: Cell reports

Status: code on request

[28327] doi:10.1016/j.isci.2024.109799 [paper]

Zanubrutinib delays selinexor resistance evolution in biopsy sample-derived primary central nervous system lymphoma models.

Journal: iScience

Status: code on request

[28328] doi:10.1016/j.omtm.2024.101251 [paper]

Rescue of myocytes and locomotion through <i>AAV2/9-2YF</i> intracisternal gene therapy in a rat model of creatine transporter deficiency.

Journal: Molecular therapy. Methods & clinical development

Status: code on request

[28329] doi:10.1016/j.omtn.2024.102200 [paper]

N4-acetylcytidine acetylation of neurexin 2 in the spinal dorsal horn regulates hypersensitivity in a rat model of cancer-induced bone pain.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[28330] doi:10.1038/s41380-024-02562-0 [paper, data]

Endogenous mutant Huntingtin alters the corticogenesis via lowering Golgi recruiting ARF1 in cortical organoid.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[28331] doi:10.1038/s41467-024-46885-6 [paper, repository]

Brightness illusions drive a neuronal response in the primary visual cortex under top-down modulation.

Journal: Nature communications

Authors' code: Zenodo 10635663 (CC-BY-4.0), alirezasaeedi1988/saeedi-et-al-2024 (no license)

Status: code verified, 26 files readable, 11 matches

[28332] doi:10.1038/s41467-024-47166-y [paper, repository]

Lineage specific transcription factor waves reprogram neuroblastoma from self-renewal to differentiation.

Journal: Nature communications

Authors' code: aidenlab/juicer (MIT), CBIIT/ChIP_seq (no license)

Status: code verified, 205 files readable, 4 matches

[28333] doi:10.1038/s41598-024-59524-3 [paper, data]

The use of residual analysis to improve the error rate accuracy of machine translation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28334] doi:10.1038/s41598-024-60031-8 [paper, data]

RAPID resistance to BET inhibitors is mediated by FGFR1 in glioblastoma.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28335] doi:10.1038/s44277-024-00006-9 [paper, repository]

Probing the digital exposome: associations of social media use patterns with youth mental health.

Journal: NPP - digital psychiatry and neuroscience

Authors' code: barzilab1/ABCD_digital_exposome (no license)

Status: dead link

[28336] doi:10.1038/s44319-024-00134-5 [paper, repository]

Detecting material state changes in the nucleolus by label-free digital holographic microscopy.

Journal: EMBO reports

Authors' code: legerjean/nucleolus_seg_DHM (no license)

Status: code verified, 13 files readable, 2 matches

[28337] doi:10.1073/pnas.2322692121 [paper]

A mammalian tripartite enhancer cluster controls hypothalamic &lt;i&gt;Pomc&lt;/i&gt; expression, food intake, and body weight.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[28338] doi:10.1371/journal.pbio.3002559 [paper, repository]

Neuronal cell cycle reentry events in the aging brain are more prevalent in neurodegeneration and lead to cellular senescence.

Journal: PLoS biology

Authors' code: Zenodo 10604562 (CC-BY-4.0), broadinstitute/InferCNV (other), kimchow-lab/exsenescence (no license)

Status: code verified, 117 files readable, 23 matches

[28339] doi:10.2147/jpr.s437366 [paper, repository]

Reduced Visuospatial Attention in Personal Space is Not Limited to the Affected Limb in Complex Regional Pain Syndrome.

Journal: Journal of pain research

Authors' code: OSF mrf2h (no license)

Status: code verified, 2 files readable, 2 matches

[28340] doi:10.3390/bioengineering11050410 [paper, data]

Cancerous and Non-Cancerous MRI Classification Using Dual DCNN Approach.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[28341] doi:10.3390/life14050539 [paper, repository]

No Object-Location Memory Improvement through Focal Transcranial Direct Current Stimulation over the Right Temporoparietal Cortex.

Journal: Life (Basel, Switzerland)

Authors' code: annaelisabethfromm/PlastOLM_statistics (no license)

Status: code verified, 2 files readable, 1 match

[28342] doi:10.3892/etm.2024.12548 [paper, data]

Disseminated central nervous system tuberculoma in a patient with scrub typhus: A case report.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

Monday, 22 April 2024 (30 papers)

[28343] doi:10.1002/dad2.12585 [paper, repository]

Distinct patterns of voxel- and connection-based white matter hyperintensity distribution and associated factors in early-onset and late-onset Alzheimer's disease.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: Yutong441/ADcon (no license)

Status: code verified, 30 files readable, 7 matches

[28344] doi:10.1007/s12035-024-04176-7 [paper]

Bioinformatics Approach to Identify the Pathogenetic Link of Gut Microbiota-Derived Short-Chain Fatty Acids and Ischemic Stroke.

Journal: Molecular neurobiology

Status: data only

[28345] doi:10.1016/j.dcn.2024.101386 [paper, repository]

Differences in educational opportunity predict white matter development.

Journal: Developmental cognitive neuroscience

Authors' code: earoy/white_matter_education (no license)

Status: code verified, 8 files readable, 7 matches

[28346] doi:10.1038/s41398-024-02910-2 [paper, data]

Common risk alleles for schizophrenia within the major histocompatibility complex predict white matter microstructure.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[28347] doi:10.1038/s41467-024-46915-3 [paper, repository]

Neural étendue expander for ultra-wide-angle high-fidelity holographic display.

Journal: Nature communications

Authors' code: Zenodo 10653321 (no license)

Status: code verified, 13 files readable

[28348] doi:10.1038/s41467-024-47571-3 [paper, repository]

Intracellular magnesium optimizes transmission efficiency and plasticity of hippocampal synapses by reconfiguring their connectivity.

Journal: Nature communications

Authors' code: flatironinstitute/CaImAn (GPL-2.0)

Status: code verified, 118 files readable

[28349] doi:10.1038/s41467-024-47749-9 [paper, repository]

Prediction error processing and sharpening of expected information across the face-processing hierarchy.

Journal: Nature communications

Authors' code: OSF 765jx (no license), rsagroup/rsatoolbox (MIT), cran.r-project.org/web/packages (no license)

Status: code verified, 146 files readable, 16 matches

[28350] doi:10.1038/s41467-024-47762-y [paper, repository]

Diverse and asymmetric patterns of single-neuron projectome in regulating interhemispheric connectivity.

Journal: Nature communications

Authors' code: marmosetbrainmapping/codes_Fei2024 (no license)

Status: code verified, 740 files readable, 9 matches

[28351] doi:10.1038/s41531-024-00681-7 [paper, repository]

Diet and the gut microbiome in patients with Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: dayoonkwon/PEGDiet (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[28352] doi:10.1038/s41592-024-02245-2 [paper, repository]

Virtual reality-empowered deep-learning analysis of brain cells.

Journal: Nature methods

Authors' code: Zenodo 5986129 (CC-BY-4.0), erturklab/delivr_cfos (MIT), vaa3d/vaa3d_tools (MIT), abria/terastitcher (other), FasterXML/jackson (no license), erturklab/delivr_train (MIT), biovoxxel/biovoxxel-toolbox (BSD)

Status: code verified, 2,416 files readable, 9 matches

[28353] doi:10.1038/s41593-024-01624-4 [paper, repository]

Cortical gene expression architecture links healthy neurodevelopment to the imaging, transcriptomics and genetics of autism and schizophrenia.

Journal: Nature neuroscience

Authors' code: richardajdear/AHBA_gradients (no license), dhglab/Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD (no license)

Status: code verified, 108 files readable, 12 matches

[28354] doi:10.1038/s41597-024-03242-y [paper, data]

The Mexican dataset of a repetitive transcranial magnetic stimulation clinical trial on cocaine use disorder patients: SUDMEX TMS.

Journal: Scientific data

Status: data only, 3 datasets cited

[28355] doi:10.1038/s41598-024-59529-y [paper, repository]

Streamlining neuroradiology workflow with AI for improved cerebrovascular structure monitoring.

Journal: Scientific reports

Authors' code: FredrikNysjo/ichseg (MIT)

Status: code verified, 27 files readable

[28356] doi:10.1038/s41598-024-59590-7 [paper]

External evaluation of a deep learning-based approach for automated brain volumetry in patients with huntington's disease.

Journal: Scientific reports

Status: code on request

[28357] doi:10.1038/s42003-024-06016-9 [paper, repository]

Salience network connectivity is altered in 6-week-old infants at heightened likelihood for developing autism.

Journal: Communications biology

Authors' code: Zenodo 8403701 (CC-BY-4.0)

Status: code verified, 3 files readable

[28358] doi:10.1038/s42003-024-06162-0 [paper, repository]

Revealing the mechanisms of semantic satiation with deep learning models.

Journal: Communications biology

Authors' code: Zenodo 10894595 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[28359] doi:10.1073/pnas.2312992121 [paper, repository]

Chaotic neural dynamics facilitate probabilistic computations through sampling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: yu-terada/chaos-sampling (no license)

Status: code verified, 4 files readable

[28360] doi:10.1073/pnas.2314224121 [paper, repository]

Body mass index-dependent shifts along large-scale gradients in human cortical organization explain dietary regulatory success.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Remi-Janet/Brain-state-shift (Unlicense)

Status: code verified, 3 files readable

[28361] doi:10.1073/pnas.2322157121 [paper, data]

Evolutionarily conserved neural responses to affective touch in monkeys transcend consciousness and change with age.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[28362] doi:10.1089/neur.2024.0015 [paper]

Risk of Long-Term Ischemic Stroke in Patients With Traumatic Brain Injury and Incident Hypertension.

Journal: Neurotrauma reports

Status: code on request

[28363] doi:10.1186/s12885-024-12244-3 [paper, data]

PROTAC EZH2 degrader-1 overcomes the resistance of podophyllotoxin derivatives in refractory small cell lung cancer with leptomeningeal metastasis.

Journal: BMC cancer

Status: data only, 1 dataset cited

[28364] doi:10.1186/s12974-024-03103-w [paper, data]

Itaconate alleviates anesthesia/surgery-induced cognitive impairment by activating a Nrf2-dependent anti-neuroinflammation and neurogenesis via gut-brain axis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[28365] doi:10.1371/journal.pcbi.1012054 [paper, repository]

Neutral competition explains the clonal composition of neural organoids.

Journal: PLoS computational biology

Authors' code: Cibiv/SANjar (no license)

Status: code verified, 30 files readable, 3 matches

[28366] doi:10.1371/journal.pone.0302238 [paper, data]

Enhancing early autism diagnosis through machine learning: Exploring raw motion data for classification.

Journal: PloS one

Status: data only, 1 dataset cited

[28367] doi:10.1523/eneuro.0317-23.2024 [paper, repository]

Transient Seizure Clusters and Epileptiform Activity Following Widespread Bilateral Hippocampal Interneuron Ablation.

Journal: eNeuro

Authors' code: cincibrainlab/vhtp (GPL-3.0)

Status: code verified, 191 files readable, 2 matches

[28368] doi:10.3389/fnhum.2024.1384179 [paper, data]

Music training is related to late ERP modulation and enhanced performance during Simon task but not Stroop task.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[28369] doi:10.3390/biomedicines12040927 [paper, repository]

Combined Metabolic Activators with Different NAD+ Precursors Improve Metabolic Functions in the Animal Models of Neurodegenerative Diseases.

Journal: Biomedicines

Authors' code: sysmedicine/NDDanimal (no license)

Status: code verified, 5 files readable

[28370] doi:10.3390/jimaging10040096 [paper]

Development and Implementation of an Innovative Framework for Automated Radiomics Analysis in Neuroimaging.

Journal: Journal of imaging

Status: code on request

[28371] doi:10.7554/elife.83382 [paper, data]

Experience transforms crossmodal object representations in the anterior temporal lobes.

Journal: eLife

Status: data only, 2 datasets cited

[28372] doi:10.7554/elife.92393 [paper, repository]

Antipsychotic-induced epigenomic reorganization in frontal cortex of individuals with schizophrenia.

Journal: eLife

Authors' code: changlulab/Zhu_Ainsworth_et_al_2023 (GPL-3.0)

Status: code verified, 20 files readable, 7 matches

Sunday, 21 April 2024 (4 papers)

[28373] doi:10.1016/j.celrep.2024.114128 [paper, repository]

Systematic characterization of multi-omics landscape between gut microbial metabolites and GPCRome in Alzheimer's disease.

Journal: Cell reports

Authors' code: ChengF-Lab/Gut-GPCRome (no license), jenniening/deltaVinaXGB (GPL-3.0)

Status: code verified, 107 files readable, 3 matches

[28374] doi:10.1016/j.celrep.2024.114139 [paper]

Multiplexed single-cell lineage tracing of mitotic kinesin inhibitor resistance in glioblastoma.

Journal: Cell reports

Status: code on request

[28375] doi:10.1038/s41598-024-59411-x [paper, data]

Effects and prediction of cognitive load on encoding model of brain response to auditory and linguistic stimuli in educational multimedia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28376] doi:10.1080/15548627.2024.2330043 [paper, data]

<i>Streptococcus pneumoniae</i> extracellular vesicles aggravate alveolar epithelial barrier disruption via autophagic degradation of OCLN (occludin).

Journal: Autophagy

Status: data only, 1 dataset cited

Saturday, 20 April 2024 (12 papers)

[28377] doi:10.1007/s00381-024-06416-6 [paper, repository]

Radiomic- and dosiomic-based clustering development for radio-induced neurotoxicity in pediatric medulloblastoma.

Journal: Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery

Authors' code: pyradiomics.readthedocs.io (no license)

Status: code verified

[28378] doi:10.1007/s00429-024-02798-0 [paper, repository]

Functional mapping of the somatosensory cortex using noninvasive fMRI and touch in awake dogs.

Journal: Brain structure & function

Authors' code: alexandrinaguran/somatostudy (no license)

Status: code verified, 10 files readable

[28379] doi:10.1016/j.crneur.2024.100130 [paper, repository]

The type of inhibition provided by thalamic interneurons alters the input selectivity of thalamocortical neurons.

Journal: Current research in neurobiology

Authors' code: dd119-ic/in-dlgn-paper (no license)

Status: dead link

[28380] doi:10.1016/j.ijchp.2024.100459 [paper, repository]

Mindfulness-based intervention reduce interference of negative stimuli to working memory in individuals with subclinical depression: A randomized controlled fMRI study.

Journal: International journal of clinical and health psychology : IJCHP

Authors' code: Chengjin-1/Supplementary-material-of-intervention-scheme (no license)

Status: empty repository

[28381] doi:10.1016/j.neuroimage.2024.120622 [paper, repository]

Unraveling the molecular relevance of brain phenotypes: A comparative analysis of null models and test statistics.

Journal: NeuroImage

Authors' code: zhlpeng/paper_code (no license), zh1peng/paper_code (no license)

Status: code verified, 212 files readable, 3 matches

[28382] doi:10.1038/s41598-024-59468-8 [paper, repository]

Stability of transcranial magnetic stimulation electroencephalogram evoked potentials in pediatric epilepsy.

Journal: Scientific reports

Authors' code: Pediatric-Neurostimulation-Laboratory/TEP-Stability (no license)

Status: code verified, 4 files readable

[28383] doi:10.1038/s41598-024-59750-9 [paper]

Eye movement function captured via an electronic tablet informs on cognition and disease severity in Parkinson's disease.

Journal: Scientific reports

Status: code on request

[28384] doi:10.1038/s41598-024-59765-2 [paper, data]

Scaling theory of fractal complex networks.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28385] doi:10.1038/s41598-024-59930-7 [paper, repository]

An analysis of information segregation in parallel streams of a multi-stream convolutional neural network.

Journal: Scientific reports

Authors' code: hdl.handle.net/11094/94838 (no license)

Status: code verified

[28386] doi:10.2463/mrms.rev.2024-0001 [paper, repository]

So You Want to Image Myelin Using MRI: Magnetic Susceptibility Source Separation for Myelin Imaging.

Journal: Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine

Authors' code: SNU-LIST/chi-separation (no license), AMRI-Lab/APART-QSM (no license)

Status: code verified, 13 files readable

[28387] doi:10.3390/brainsci14040402 [paper, repository]

Sensorimotor Oscillations in Human Infants during an Innate Rhythmic Movement.

Journal: Brain sciences

Authors' code: r-project.org (no license)

Status: code verified

[28388] doi:10.3390/brainsci14040404 [paper, data]

Differential Cortical and Subcortical Activations during Different Stages of Muscle Control: A Functional Magnetic Resonance Imaging Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

Friday, 19 April 2024 (18 papers)

[28389] doi:10.1016/j.isci.2024.109778 [paper]

A cingulate-hippocampal circuit mediates early depressive-like behavior in the mouse model of Alzheimer disease.

Journal: iScience

Status: code on request

[28390] doi:10.1073/pnas.2306382121 [paper, repository]

Functional specialization of hippocampal somatostatin-expressing interneurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10815380 (CC-BY-4.0)

Status: code verified

[28391] doi:10.1126/science.adk6742 [paper, repository]

Drugs of abuse hijack a mesolimbic pathway that processes homeostatic need.

Journal: Science (New York, N.Y.)

Authors' code: doi:10.5061/dryad.qrfj6q5nx (no license)

Status: code verified

[28392] doi:10.1136/jmg-2023-109295 [paper, repository]

Iron and risk of dementia: Mendelian randomisation analysis in UK Biobank.

Journal: Journal of medical genetics

Authors' code: biobank.ndph.ox.ac.uk/ukb/label.cgi (no license)

Status: code verified

[28393] doi:10.1186/s12911-024-02500-8 [paper, data]

Mapping of Alzheimer's disease related data elements and the NIH Common Data Elements.

Journal: BMC medical informatics and decision making

Status: data only, 1 dataset cited

[28394] doi:10.1186/s12915-024-01883-4 [paper, repository]

Prediction of blood-brain barrier penetrating peptides based on data augmentation with Augur.

Journal: BMC biology

Authors' code: figshare 25466461 (CC-BY-4.0)

Status: code verified, 1 file readable

[28395] doi:10.1186/s13287-024-03721-4 [paper, data]

Cell-specific extracellular vesicle-encapsulated exogenous GABA controls seizures in epilepsy.

Journal: Stem cell research & therapy

Status: data only, 8 datasets cited

[28396] doi:10.1186/s13287-024-03728-x [paper, data]

Transcriptomic profiling across human serotonin neuron differentiation via the FEV reporter system.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[28397] doi:10.1371/journal.pcbi.1012000 [paper, repository]

What does the mean mean? A simple test for neuroscience.

Journal: PLoS computational biology

Authors' code: figshare 9598406 (CC-BY-4.0), atlaie/BrainAveraging (GPL-3.0)

Status: code verified, 6 files readable

[28398] doi:10.3389/fnagi.2024.1369179 [paper, data]

Neuroanatomical correlates of distracted straight driving performance: a driving simulator MRI study across the lifespan.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[28399] doi:10.3389/fncom.2024.1276292 [paper, repository]

Grid codes vs. multi-scale, multi-field place codes for space.

Journal: Frontiers in computational neuroscience

Authors' code: dietriro/msmf-code (GPL-3.0)

Status: code verified, 36 files readable, 4 matches

[28400] doi:10.3389/fninf.2024.1323203 [paper, repository]

Building a realistic, scalable memory model with independent engrams using a homeostatic mechanism.

Journal: Frontiers in neuroinformatics

Authors' code: tuda-parallel/RELeARN (BSD-3-Clause), Zenodo 8287234 (no license)

Status: code verified, 788 files readable, 5 matches

[28401] doi:10.3390/brainsci14040398 [paper, data]

Cerebral and Peripheral Immune Cell Changes following Rodent Juvenile Traumatic Brain Injury.

Journal: Brain sciences

Status: data only, 1 dataset cited

[28402] doi:10.3390/brainsci14040399 [paper, data]

Acupuncture Extended the Thrombolysis Window by Suppressing Blood-Brain Barrier Disruption and Regulating Autophagy-Apoptosis Balance after Ischemic Stroke.

Journal: Brain sciences

Status: data only, 1 dataset cited

[28403] doi:10.3390/cancers16081566 [paper, repository]

Advancements in Image-Based Models for High-Grade Gliomas Might Be Accelerated.

Journal: Cancers

Authors' code: razeineldin/NeuroXAI (Apache-2.0)

Status: code verified, 22 files readable

[28404] doi:10.3390/ph17040529 [paper, data]

Comparison of Glioblastoma Cell Culture Platforms Based on Transcriptional Similarity with Paired Tissue.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

[28405] doi:10.3892/mmr.2024.13228 [paper]

Deciphering microglial activation and neuronal apoptosis post‑traumatic brain injury: The role of TYROBP in inflammation regulation networks.

Journal: Molecular medicine reports

Status: data only

[28406] doi:10.7717/peerj-cs.1977 [paper, data]

E-MFNN: an emotion-multimodal fusion neural network framework for emotion recognition.

Journal: PeerJ. Computer science

Status: data only, 2 datasets cited

Thursday, 18 April 2024 (41 papers)

[28407] doi:10.1002/advs.202305555 [paper, repository]

Multi-Sensor Origami Platform: A Customizable System for Obtaining Spatiotemporally Precise Functional Readouts in 3D Models.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: MaozLab/MaozAnalyzer (no license)

Status: empty repository, 1 file readable

[28408] doi:10.1002/advs.202307965 [paper, repository]

DIMOND: DIffusion Model OptimizatioN with Deep Learning.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: NYU-DiffusionMRI/DESIGNER (MIT), AthenaEPI/dmipy (MIT), Lthinker/DIMOND (no license)

Status: code verified, 174 files readable, 10 matches

[28409] doi:10.1007/s10142-024-01345-8 [paper, data]

Amlodipine inhibits Synaptotagmin-4's oncogenic activity on gastric cancer proliferation by targeting calcium signaling.

Journal: Functional & integrative genomics

Status: data only, 2 datasets cited

[28410] doi:10.1016/j.heliyon.2024.e29951 [paper, data]

The impact of cerebellar transcranial direct current stimulation on isometric bench press performance in trained athletes.

Journal: Heliyon

Status: data only, 1 dataset cited

[28411] doi:10.1016/j.isci.2024.109768 [paper, repository]

Molecular clues unveiling spinocerebellar ataxia type-12 pathogenesis.

Journal: iScience

Authors' code: viv3kanand/SCA12-RNA-Seq-Analysis (no license)

Status: code verified, 6 files readable, 5 matches

[28412] doi:10.1016/j.isci.2024.109777 [paper]

New AAV9 engineered variants with enhanced neurotropism and reduced liver off-targeting in mice and marmosets.

Journal: iScience

Status: code on request

[28413] doi:10.1016/j.isci.2024.109787 [paper]

ER stress in mouse serotonin neurons triggers a depressive phenotype alleviated by ketamine targeting eIF2α signaling.

Journal: iScience

Status: code on request

[28414] doi:10.1016/j.nicl.2024.103607 [paper]

The connection of motor improvement after deep brain stimulation in Parkinson's disease and microstructural integrity of the substantia nigra and subthalamic nucleus.

Journal: NeuroImage. Clinical

Status: code on request

[28415] doi:10.1016/j.ohx.2024.e00529 [paper, data]

NeuroSense: A non-invasive and configurable somatosensory stimulator with OPENVIBE communication.

Journal: HardwareX

Status: data only, 1 dataset cited

[28416] doi:10.1038/s41467-024-47227-2 [paper, repository]

Membrane to cortex attachment determines different mechanical phenotypes in LGR5+ and LGR5- colorectal cancer cells.

Journal: Nature communications

Authors' code: ZELLMECHANIK-DRESDEN/ShapeOut2 (GPL-3.0), xt-prc-lab/Conti_et_al_2024 (GPL-3.0)

Status: code verified, 129 files readable, 2 matches

[28417] doi:10.1038/s41467-024-47322-4 [paper, data]

Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A.

Journal: Nature communications

Status: data only, 1 dataset cited

[28418] doi:10.1038/s41467-024-47356-8 [paper]

Perceptography unveils the causal contribution of inferior temporal cortex to visual perception.

Journal: Nature communications

Status: code on request

[28419] doi:10.1038/s41467-024-47642-5 [paper, data]

A CMOS-compatible oscillation-based VO₂ Ising machine solver.

Journal: Nature communications

Status: data only, 1 dataset cited

[28420] doi:10.1038/s41467-024-47652-3 [paper, repository]

Green moisture-electric generator based on supramolecular hydrogel with tens of milliamp electricity toward practical applications.

Journal: Nature communications

Authors' code: Zenodo 10799125 (CC-BY-4.0), sniuyang/source-data (no license)

Status: code verified, 1 file readable

[28421] doi:10.1038/s41467-024-47698-3 [paper, repository]

CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators.

Journal: Nature communications

Authors' code: Greerlab/CD20_2023_paper (MIT), Zenodo 10822757 (CC-BY-4.0)

Status: code verified, 24 files readable, 4 matches

[28422] doi:10.1038/s41539-024-00242-w [paper]

Alpha neurofeedback training improves visual working memory in healthy individuals.

Journal: NPJ science of learning

Status: code on request

[28423] doi:10.1038/s41598-024-59376-x [paper, repository]

Convolutional neural networks develop major organizational principles of early visual cortex when enhanced with retinal sampling.

Journal: Scientific reports

Authors' code: dannydacosta/RetinalSampling (GPL-3.0)

Status: code verified, 9 files readable, 9 matches

[28424] doi:10.1038/s41698-024-00578-x [paper, repository]

Evaluating cell culture reliability in pediatric brain tumor primary cells through DNA methylation profiling.

Journal: NPJ precision oncology

Authors' code: bioconductor.org/packages/copyneutralima (no license)

Status: code verified

[28425] doi:10.1038/s42003-024-06187-5 [paper, repository]

Longitudinal microstructural changes in 18 amygdala nuclei resonate with cortical circuits and phenomics.

Journal: Communications biology

Authors' code: MRCIEU/PHESANT (MIT), dblabs-mcgill-mila/amygdala_plasticity (no license)

Status: code verified, 59 files readable, 5 matches

[28426] doi:10.1063/5.0187441 [paper, data]

Automated dual olfactory device for studying head/tail chemosensation in <i>Caenorhabditis elegans</i>.

Journal: APL bioengineering

Status: data only, 1 dataset cited

[28427] doi:10.1073/pnas.2318943121 [paper, data]

Parkinsonism Sac domain mutation in Synaptojanin-1 affects ciliary properties in iPSC-derived dopaminergic neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[28428] doi:10.1073/pnas.2319607121 [paper, data]

CNS autoimmune response in the MAM/pilocarpine rat model of epileptogenic cortical malformation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[28429] doi:10.1073/pnas.2320311121 [paper, repository]

Temporal and spatial dynamics of &lt;i&gt;Listeria monocytogenes&lt;/i&gt; central nervous system infection in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hullahalli/stampr_rtisan (MIT)

Status: code verified, 25 files readable, 1 match

[28430] doi:10.1073/pnas.2403858121 [paper, repository]

Spontaneous eye movements reflect the representational geometries of conceptual spaces.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 9gxbe (no license)

Status: code verified, 1 file readable

[28431] doi:10.1101/2024.04.16.589741 [paper, repository]

Connectome-driven neural inventory of a complete visual system

Journal: bioRxiv (preprint)

Authors' code: Zenodo 15045306 (GPL-3.0), reiserlab/male-drosophila-visual-system-connectome-code (GPL-3.0), Zenodo 13633521 (GPL-3.0), Zenodo 15015112 (CC-BY-4.0), reiserlab/male-drosophila-visual-system-connectome (CC-BY-4.0), Zenodo 10891950 (CC-BY-4.0), Zenodo 13633522 (CC-BY-4.0)

Status: code verified, 304 files readable

[28432] doi:10.1111/ejn.16346 [paper, data]

The 3,4-methylenedioxymethamphetamine enhances early visual processing for salient socio-emotional stimuli.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[28433] doi:10.1111/tops.12733 [paper, repository]

Neural Generative Models and the Parallel Architecture of Language: A Critical Review and Outlook.

Journal: Topics in cognitive science

Authors' code: OSF c7f4u (no license)

Status: code verified, 17 files readable

[28434] doi:10.1159/000538656 [paper, data]

Transcription Factor EB Overexpression through Glial Fibrillary Acidic Protein Promoter Disrupts Neuronal Lamination by Dysregulating Neurogenesis during Embryonic Development.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[28435] doi:10.1159/000538692 [paper, data]

Exposure to Progestin 17-OHPC Induces Gastrointestinal Dysfunction through Claudin-1 Suppression in Female Mice with Increased Anxiety-Like Behaviors.

Journal: Neuroendocrinology

Status: data only, 1 dataset cited

[28436] doi:10.1162/imag_a_00133 [paper, repository]

Stability and variation of brain-behavior correlation patterns across measures of social support.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: h-merritt/multilayer-social-support (no license)

Status: code verified, 2 files readable, 4 matches

[28437] doi:10.1162/imag_a_00135 [paper]

Evaluating the effect of extra-cerebral off-target binding in [F-18]MK6240 PET scans in early-stage Alzheimer's disease.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[28438] doi:10.1162/imag_a_00140 [paper, repository]

Unlocking near-whole-brain, layer-specific functional connectivity with 3D VAPER fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF h9u64 (no license), yuhuichai/LayConn (no license), freesurfer.net (no license), afni.nimh.nih.gov (no license), fil.ion.ucl.ac.uk/spm (no license), layerfMRI/LAYNII (BSD-3-Clause)

Status: code verified, 133 files readable, 4 matches

[28439] doi:10.1162/imag_a_00143 [paper, repository]

Reduced cortical complexity in ventromedial prefrontal cortex is associated with a greater preference for risky and immediate rewards.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sangillee/UMm (GPL-3.0)

Status: code verified, 10 files readable

[28440] doi:10.1186/s12993-024-00233-2 [paper, repository]

Beyond visual integration: sensitivity of the temporal-parietal junction for objects, places, and faces.

Journal: Behavioral and brain functions : BBF

Authors' code: OSF v8w7f (no license)

Status: code found, still to be checked

[28441] doi:10.1186/s40478-024-01743-w [paper, data]

ADNP dysregulates methylation and mitochondrial gene expression in the cerebellum of a Helsmoortel-Van der Aa syndrome autopsy case.

Journal: Acta neuropathologica communications

Status: data only, 6 datasets cited

[28442] doi:10.1371/journal.pone.0292979 [paper, repository]

How long is long? Word length effects in reading correspond to minimal graphemic units: An MEG study in Bangla.

Journal: PloS one

Authors' code: OSF ptf63 (no license)

Status: code verified, 10 files readable, 5 matches

[28443] doi:10.1371/journal.pone.0298349 [paper, data]

The functional connectivity of the human claustrum, according to the Human Connectome Project database.

Journal: PloS one

Status: data only, 1 dataset cited

[28444] doi:10.3389/fneur.2024.1327871 [paper, data]

Use of the Canadian CT head rule for patients on anticoagulant/anti-platelet therapy presenting with mild traumatic brain injury: prospective observational study.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[28445] doi:10.3389/fpsyt.2024.1338168 [paper, data]

Novel missense variants in brain morphogenic genes associated with depression and schizophrenia.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[28446] doi:10.3389/frobt.2024.1324404 [paper, repository]

Neural dynamics of robust legged robots.

Journal: Frontiers in robotics and AI

Authors' code: NVIDIA-Omniverse/IsaacGymEnvs (BSD-3-Clause), Denys88/rl_games (MIT)

Status: code verified, 265 files readable, 3 matches

[28447] doi:10.7554/elife.90182 [paper, repository]

Species -shared and -unique gyral peaks on human and macaque brains.

Journal: eLife

Authors' code: zsy0728/extract-gyral-peak (no license)

Status: code verified, 3 files readable

Wednesday, 17 April 2024 (44 papers, 1 on this page)

[28448] doi:10.1002/anie.202317756 [paper, data]

Single-Molecule Characterization and Super-Resolution Imaging of Alzheimer's Disease-Relevant Tau Aggregates in Human Samples.

Journal: Angewandte Chemie (International ed. in English)

Status: data only, 1 dataset cited

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