Every paper, by date: page 128

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 128 of 200: 17 April 2024 to 9 April 2024.

Wednesday, 17 April 2024 (44 papers, 43 on this page)

[28449] doi:10.1007/s10565-024-09865-6 [paper, data]

circRNA-PTPN4 mediated regulation of FOXO3 and ZO-1 expression: implications for blood-brain barrier integrity and cognitive function in uremic encephalopathy.

Journal: Cell biology and toxicology

Status: data only, 1 dataset cited

[28450] doi:10.1007/s11060-024-04672-9 [paper, data]

Rebound growth of BRAF mutant pediatric glioma cells after MAPKi withdrawal is associated with MAPK reactivation and secretion of microglia-recruiting cytokines.

Journal: Journal of neuro-oncology

Status: data only, 1 dataset cited

[28451] doi:10.1016/j.apsb.2024.03.034 [paper, data]

Monoclonal antibodies and aptamers: The future therapeutics for Alzheimer's disease.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

[28452] doi:10.1016/j.ijchp.2024.100462 [paper, repository]

Transcutaneous auricular vagus nerve stimulation enhanced emotional inhibitory control via increasing intrinsic prefrontal couplings.

Journal: International journal of clinical and health psychology : IJCHP

Authors' code: github.co (no license), zhaolab205/taVNS_effects (no license)

Status: code verified, 10 files readable, 1 match

[28453] doi:10.1016/j.isci.2024.109759 [paper, repository]

Revealing neural dynamical structure of <i>C. elegans</i> with deep learning.

Journal: iScience

Authors' code: minecraburn/DNN_for_Celegans (no license)

Status: code verified, 14 files readable, 5 matches

[28454] doi:10.1016/j.xcrp.2024.101892 [paper, repository]

Quantifying synergy and redundancy between networks.

Journal: Cell reports. Physical science

Authors' code: supp:PMC11077508/mmc2.zip (no license)

Status: code verified, 1 file readable, 2 matches

[28455] doi:10.1016/j.xpro.2024.103017 [paper, repository]

Protocol to analyze 3D neurodegenerative vacuoles in Drosophila melanogaster.

Journal: STAR protocols

Authors' code: McCallLabBU/neurodegeneration_vacuole_quantification (no license), Zenodo 10810496 (CC-BY-4.0)

Status: code verified, 8 files readable

[28456] doi:10.1038/s41467-024-47484-1 [paper, repository]

Reconstruction of macroglia and adult neurogenesis evolution through cross-species single-cell transcriptomic analyses.

Journal: Nature communications

Authors' code: entrepot.recherche.data.gouv.fr/privateurl.xhtml (no license)

Status: code verified

[28457] doi:10.1038/s41562-024-01844-5 [paper, repository]

Goal commitment is supported by vmPFC through selective attention.

Journal: Nature human behaviour

Authors' code: OSF mvquk (no license)

Status: code verified, 2 files readable, 1 match

[28458] doi:10.1038/s41586-024-07309-z [paper, repository]

Control of working memory by phase-amplitude coupling of human hippocampal neurons.

Journal: Nature

Authors' code: rutishauserlab/SBCAT-release-NWB (BSD-3-Clause), Zenodo 10494533 (CC-BY-4.0), Zenodo 10494534 (CC-BY-4.0)

Status: code verified, 174 files readable, 17 matches

[28459] doi:10.1038/s41586-024-07311-5 [paper, repository]

Network-level encoding of local neurotransmitters in cortical astrocytes.

Journal: Nature

Authors' code: Zenodo 10681987 (MIT)

Status: code verified, 154 files readable, 37 matches

[28460] doi:10.1038/s41586-024-07317-z [paper, data]

Control of neuronal excitation-inhibition balance by BMP-SMAD1 signalling.

Journal: Nature

Status: code on request, 1 dataset cited

[28461] doi:10.1038/s41591-024-02924-9 [paper, data]

The fasciola cinereum of the hippocampal tail as an interventional target in epilepsy.

Journal: Nature medicine

Status: data only, 1 dataset cited

[28462] doi:10.1038/s41598-024-59440-6 [paper, repository]

ANTsX neuroimaging-derived structural phenotypes of UK Biobank.

Journal: Scientific reports

Authors' code: ntustison/ANTsXUKBBPublic (no license), tinyurl.com/antsxtutorial (no license), ntustison/ANTsXUKBB (no license)

Status: code verified

[28463] doi:10.1038/s41598-024-59445-1 [paper, repository]

Distinct learning, retention, and generalization patterns in de novo learning versus motor adaptation.

Journal: Scientific reports

Authors' code: OSF 786nf (no license), OSF 37t6y (no license)

Status: code verified, 28 files readable, 3 matches

[28464] doi:10.1038/s41598-024-59469-7 [paper, repository]

Convolutional spiking neural networks for intent detection based on anticipatory brain potentials using electroencephalogram.

Journal: Scientific reports

Authors' code: sid-nadendla/BI-SpikeEEG (MIT)

Status: code verified, 7 files readable, 3 matches

[28465] doi:10.1038/s41598-024-59579-2 [paper, repository]

Improved data quality and statistical power of trial-level event-related potentials with Bayesian random-shift Gaussian processes.

Journal: Scientific reports

Authors' code: Beniamino92/BayesRPAGP (no license)

Status: code verified, 8 files readable, 3 matches

[28466] doi:10.1038/s41598-024-59734-9 [paper, repository]

Non-animal models for blood-brain barrier permeability evaluation of drug-like compounds.

Journal: Scientific reports

Authors' code: fdehnbostel/bbbPythoN (CC-BY-NC-ND-4.0)

Status: code verified, 4 files readable, 2 matches

[28467] doi:10.1038/s42003-024-06094-9 [paper, data]

An evolutionary timeline of the oxytocin signaling pathway.

Journal: Communications biology

Status: data only, 1 dataset cited

[28468] doi:10.1073/pnas.2318849121 [paper, data]

The olivary input to the cerebellum dissociates sensory events from movement plans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[28469] doi:10.1073/pnas.2320345121 [paper, data]

C-type inactivation and proton modulation mechanisms of the TASK3 channel.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 9 datasets cited

[28470] doi:10.1088/1741-2552/ad3b3a [paper, repository]

BRAND: a platform for closed-loop experiments with deep network models.

Journal: Journal of neural engineering

Authors' code: brandbci/brand (MIT)

Status: code verified, 33 files readable, 2 matches

[28471] doi:10.1098/rsob.230383 [paper, repository]

Mapping combinatorial expression of non-clustered protocadherins in the developing brain identifies novel PCDH19-mediated cell adhesion properties.

Journal: Open biology

Authors' code: universityofadelaide.box.com/s/4nzwa0br5qi6xgtyaj3idda1id6by472 (no license)

Status: dead link

[28472] doi:10.1101/2024.04.14.586969 [paper, repository]

Shared pathway-specific network mechanisms of dopamine and deep brain stimulation for the treatment of Parkinson's disease

Journal: bioRxiv (preprint)

Authors' code: Zenodo 11203466 (CC-BY-4.0), neuromodulation/manuscript-binns_cortex_stn_comm (MIT), Zenodo 11353053 (CC-BY-4.0), Zenodo 10974656 (CC-BY-4.0)

Status: code verified, 337 files readable

[28473] doi:10.1101/2024.04.16.589618 [paper, repository]

Effects of gene dosage on cognitive ability: A function-based association study across brain and non-brain processes

Journal: bioRxiv (preprint)

Authors' code: figshare 27328227 (GPL 3.0+), figshare 27328212 (GPL 3.0+)

Status: code verified, 33 files readable

[28474] doi:10.1159/000536514 [paper, data]

Hydrogen Peroxide Is Responsible for the Cytotoxic Effects of &lt;i&gt;Streptococcus pneumoniae&lt;/i&gt; on Primary Microglia in the Absence of Pneumolysin.

Journal: Journal of innate immunity

Status: data only, 1 dataset cited

[28475] doi:10.1159/000538716 [paper, data]

Hypothalamic GABAergic Neurons Expressing Cellular Retinoic Acid Binding Protein 1 (CRABP1) Are Sensitive to Metabolic Status and Liraglutide in Male Mice.

Journal: Neuroendocrinology

Status: data only, 1 dataset cited

[28476] doi:10.1186/s12911-024-02501-7 [paper]

Text mining and portal development for gene-specific publications on Alzheimer's disease and other neurodegenerative diseases.

Journal: BMC medical informatics and decision making

Status: code on request

[28477] doi:10.1186/s13550-024-01095-5 [paper]

Short post-injection seizure duration is associated with reduced power of ictal brain perfusion SPECT to lateralize the seizure onset zone.

Journal: EJNMMI research

Status: code on request

[28478] doi:10.1371/journal.pcbi.1011562 [paper, repository]

Precise cortical contributions to sensorimotor feedback control during reactive balance.

Journal: PLoS computational biology

Authors' code: OSF kwg32 (no license)

Status: code verified, 189 files readable, 8 matches

[28479] doi:10.1371/journal.pcbi.1011965 [paper, data]

Encoding surprise by retinal ganglion cells.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[28480] doi:10.1371/journal.pone.0299703 [paper]

Hope for vascular cognitive impairment: Ac-YVAD-cmk as a novel treatment against white matter rarefaction.

Journal: PloS one

Status: data only

[28481] doi:10.1371/journal.pone.0301052 [paper, data]

Understanding the effects of stress on the P300 response during naturalistic simulation of heights exposure.

Journal: PloS one

Status: data only, 2 datasets cited

[28482] doi:10.1523/eneuro.0345-23.2023 [paper, repository]

A Multiscale Closed-Loop Neurotoxicity Model of Alzheimer's Disease Progression Explains Functional Connectivity Alterations.

Journal: eNeuro

Authors' code: jescab01/ADprogress_2023 (no license)

Status: code verified, 22 files readable, 10 matches

[28483] doi:10.1523/jneurosci.0607-23.2023 [paper, repository]

Mnemonic But Not Contextual Feedback Signals Defy Dedifferentiation in the Aging Early Visual Cortex.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: ortiztud/feedbes (no license)

Status: code verified, 87 files readable, 7 matches

[28484] doi:10.1523/jneurosci.1796-23.2024 [paper, repository]

Monosynaptic Rabies Tracing Reveals Sex- and Age-Dependent Dorsal Subiculum Connectivity Alterations in an Alzheimer's Disease Mouse Model.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: QiaoYeNeuro/Brain-Circuit-Connectivity-Analysis (no license)

Status: code verified, 3 files readable, 4 matches

[28485] doi:10.26508/lsa.202402659 [paper, data]

Autocrine VEGF drives neural stem cell proximity to the adult hippocampus vascular niche.

Journal: Life science alliance

Status: data only, 1 dataset cited

[28486] doi:10.3389/fnins.2024.1360432 [paper, data]

A method to analyze gene expression profiles from hippocampal neurons electrophysiologically recorded <i>in vivo</i>.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[28487] doi:10.3389/fnins.2024.1362497 [paper, data]

Epigenetic alterations in creatine transporter deficiency: a new marker for dodecyl creatine ester therapeutic efficacy monitoring.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[28488] doi:10.3389/frobt.2024.1362735 [paper, data]

Recruiting neural field theory for data augmentation in a motor imagery brain-computer interface.

Journal: Frontiers in robotics and AI

Status: data only, 1 dataset cited

[28489] doi:10.5334/joc.358 [paper, repository]

Explaining the Sentence Superiority Effect and N400s Elicited by Words and Short Sentences with OB1-Reader.

Journal: Journal of cognition

Authors' code: OSF xkwz9 (no license)

Status: code verified, 28 files readable, 6 matches

[28490] doi:10.7554/elife.84173 [paper, repository]

Ketamine induces multiple individually distinct whole-brain functional connectivity signatures.

Journal: eLife

Authors' code: AnticevicLab/ketamine_manuscript (no license)

Status: code verified, 24 files readable, 8 matches

[28491] doi:10.7554/elife.93721 [paper, data]

Plastic vasomotion entrainment.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 16 April 2024 (31 papers)

[28492] doi:10.1002/mrm.30094 [paper, repository]

In vivo T2 measurements of the fetal brain using single-shot fast spin echo sequences.

Journal: Magnetic resonance in medicine

Authors' code: SVRTK/SVRTK (Apache-2.0), BioMedIA/MIRTK (Apache-2.0), mriphysics/EPG-X (MIT)

Status: code verified, 814 files readable, 7 matches

[28493] doi:10.1007/s00415-024-12376-3 [paper]

TMS of the left primary motor cortex improves tremor intensity and postural control in primary orthostatic tremor.

Journal: Journal of neurology

Status: code on request

[28494] doi:10.1007/s00429-024-02794-4 [paper]

Brain structural covariances in the ageing brain in the UK Biobank.

Journal: Brain structure & function

Status: code on request

[28495] doi:10.1007/s00429-024-02795-3 [paper, data]

Contributions of the left and right thalami to language: A meta-analytic approach.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[28496] doi:10.1016/j.isci.2024.109747 [paper]

Parvalbumin interneuron activity in autism underlies susceptibility to PTSD-like memory formation.

Journal: iScience

Status: code on request

[28497] doi:10.1016/j.isci.2024.109748 [paper, repository]

Wybutosine hypomodification of tRNAphe activates HERVK and impairs neuronal differentiation.

Journal: iScience

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[28498] doi:10.1016/j.mcpdig.2024.03.006 [paper, repository]

Exploring the Impact of 3D Fast Spin Echo and Inversion Recovery Gradient Echo Sequences Magnetic Resonance Imaging Acquisition on Automated Brain Tumor Segmentation.

Journal: Mayo Clinic proceedings. Digital health

Authors' code: NeuroAI-HD/HD-GLIO-AUTO (no license)

Status: code verified, 3 files readable

[28499] doi:10.1016/j.neuroimage.2024.120617 [paper, repository]

Searching Reproducible Brain Features using NeuroMark: Templates for Different Age Populations and Imaging Modalities.

Journal: NeuroImage

Authors' code: trendscenter/gift (no license)

Status: code verified, 1,047 files readable, 5 matches

[28500] doi:10.1038/s41393-024-00993-8 [paper, repository]

Quantification of cervical spinal stenosis by automated 3D MRI segmentation of spinal cord and cerebrospinal fluid space.

Journal: Spinal cord

Authors' code: reisert/patchwork (MIT)

Status: code verified, 18 files readable

[28501] doi:10.1038/s41467-024-47366-6 [paper, repository]

Distinct information conveyed to the olfactory bulb by feedforward input from the nose and feedback from the cortex.

Journal: Nature communications

Authors' code: JDZak-Lab/Zak-et-al.-2024-Nat.-Comm (no license), JDZak-Lab/Zak-et-al.−2024-Nat.-Comm (no license), Zenodo 10697363 (CC-BY-4.0)

Status: code verified, 1 file readable

[28502] doi:10.1038/s41467-024-47495-y [paper, repository]

Robust compression and detection of epileptiform patterns in ECoG using a real-time spiking neural network hardware framework.

Journal: Nature communications

Authors' code: Zenodo 10959559 (CC-BY-4.0), costafilippo/bci2000_dynap-se (MIT)

Status: code verified, 22 files readable, 11 matches

[28503] doi:10.1038/s41467-024-47640-7 [paper, data]

CXCL5 activates CXCR2 in nociceptive sensory neurons to drive joint pain and inflammation in experimental gouty arthritis.

Journal: Nature communications

Status: data only, 1 dataset cited

[28504] doi:10.1038/s41597-024-03140-3 [paper, repository]

TOPMed imputed genomics enhances genomic atlas of the human proteome in brain, cerebrospinal fluid, and plasma.

Journal: Scientific data

Authors' code: Zenodo 10011473 (CC-BY-4.0), chr1swallace/coloc (no license), statgen/pheweb (MIT)

Status: code verified, 112 files readable, 7 matches

[28505] doi:10.1038/s41597-024-03234-y [paper, repository]

An EEG Dataset of Neural Signatures in a Competitive Two-Player Game Encouraging Deceptive Behavior.

Journal: Scientific data

Authors' code: yiyuchen-lab/DeceptionGame (MIT)

Status: code verified, 17 files readable, 13 matches

[28506] doi:10.1038/s41598-024-59111-6 [paper, data]

Exploring fetal brain tumor glioblastoma symptom verification with self organizing maps and vulnerability data analysis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28507] doi:10.1073/pnas.2315379121 [paper, repository]

Differential nanoscale organization of excitatory synapses onto excitatory vs. inhibitory neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: blanpiedlab/DharmasriLevy-PNAS-2024 (MIT)

Status: code verified, 6 files readable

[28508] doi:10.1093/braincomms/fcae130 [paper, repository]

Neuroimaging and plasma evidence of early white matter loss in Parkinson's disease with poor outcomes.

Journal: Brain communications

Authors' code: AngelikaZa/github-AngelikaZa-PoorOutcomeBiomarkersPD (GPL-3.0)

Status: code verified, 3 files readable, 4 matches

[28509] doi:10.1117/1.nph.11.2.024307 [paper, repository]

Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged <i>in vivo</i>.

Journal: Neurophotonics

Authors' code: yuyiyi/AUTOTUNE_GUIdevelopment (GPL-3.0)

Status: code verified, 136 files readable, 4 matches

[28510] doi:10.1186/s12868-024-00866-z [paper, repository]

Computational modeling of light processing in the habenula and dorsal raphe based on laser ablation of functionally-defined cells.

Journal: BMC neuroscience

Authors' code: nsuhasj/habenulaRaphe (GPL-3.0), figshare 21721058 (CC-BY-4.0)

Status: code verified, 10 files readable, 2 matches

[28511] doi:10.1186/s12929-024-01028-3 [paper, repository]

Longitudinal alterations in brain perfusion and vascular reactivity in the zQ175DN mouse model of Huntington's disease.

Journal: Journal of biomedical science

Authors' code: DeVosLab/Huntington (CC-BY-NC-SA-4.0)

Status: empty repository, 2 files readable

[28512] doi:10.1186/s13578-024-01229-1 [paper, data]

GLUT1-mediated microglial proinflammatory activation contributes to the development of stress-induced spatial learning and memory dysfunction in mice.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[28513] doi:10.1371/journal.pcbi.1011468 [paper, repository]

Network-neuron interactions underlying sensory responses of layer 5 pyramidal tract neurons in barrel cortex.

Journal: PLoS computational biology

Authors' code: Zenodo 10730381 (CC-BY-4.0), mpinb/bastfruengeletal (MIT)

Status: code verified, 196 files readable, 11 matches

[28514] doi:10.1371/journal.pcbi.1011516 [paper, repository]

Dopamine encoding of novelty facilitates efficient uncertainty-driven exploration.

Journal: PLoS computational biology

Authors' code: wang-yu-hao/BasalGangliaExploration (no license)

Status: code verified, 62 files readable, 8 matches

[28515] doi:10.1371/journal.pone.0299670 [paper, data]

7T MP2RAGE for cortical myelin segmentation: Impact of aging.

Journal: PloS one

Status: data only, 1 dataset cited

[28516] doi:10.1371/journal.pone.0300382 [paper, data]

Associations between EEG power and coherence with cognition and early precursors of speech and language development across the first months of life.

Journal: PloS one

Status: data only, 1 dataset cited

[28517] doi:10.1371/journal.pone.0301132 [paper, repository]

Simulating rigid head motion artifacts on brain magnitude MRI data-Outcome on image quality and segmentation of the cerebral cortex.

Journal: PloS one

Authors' code: OlssonHampus02/motion-simulations (no license), fepegar/torchio (Apache-2.0)

Status: code verified, 170 files readable, 3 matches

[28518] doi:10.1371/journal.pone.0301449 [paper, data]

Improved inter-subject alignment of the lumbosacral cord for group-level in vivo gray and white matter assessments: A scan-rescan MRI study at 3T.

Journal: PloS one

Status: data only, 1 dataset cited

[28519] doi:10.1371/journal.pone.0302166 [paper, data]

The effect of methylphenidate on anaesthesia recovery: An experimental study in pigs.

Journal: PloS one

Status: data only, 1 dataset cited

[28520] doi:10.3389/fendo.2024.1345498 [paper, data]

Transcriptomic analysis reveals sex-specific patterns in the hippocampus in Alzheimer's disease.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[28521] doi:10.3389/fgene.2024.1365285 [paper, data]

Transcriptomic atlas for hypoxia and following re-oxygenation in <i>Ancherythroculter nigrocauda</i> heart and brain tissues: insights into gene expression, alternative splicing, and signaling pathways.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[28522] doi:10.3389/fnins.2024.1325062 [paper, repository]

Brain topology improved spiking neural network for efficient reinforcement learning of continuous control.

Journal: Frontiers in neuroscience

Authors' code: thomasaimondy/BT-SNN (Apache-2.0)

Status: code verified, 3 files readable

Monday, 15 April 2024 (29 papers)

[28523] doi:10.1002/mco2.525 [paper, data]

High glutamine increases stroke risk by inducing the endothelial-to-mesenchymal transition in moyamoya disease.

Journal: MedComm

Status: data only, 1 dataset cited

[28524] doi:10.1007/s10071-024-01873-7 [paper, data]

Figure-ground segmentation based on motion in the archerfish.

Journal: Animal cognition

Status: data only, 1 dataset cited

[28525] doi:10.1016/j.ajhg.2024.03.015 [paper]

CAG repeat mosaicism is gene specific in spinocerebellar ataxias.

Journal: American journal of human genetics

Status: code on request

[28526] doi:10.1016/j.celrep.2024.114120 [paper, repository]

CCR2⁺ monocytes replenish border-associated macrophages in the diseased mouse brain.

Journal: Cell reports

Authors' code: Zenodo 10836098 (CC-BY-4.0), lingxiaowang357/bams-cell-reports (no license)

Status: code verified, 6 files readable, 7 matches

[28527] doi:10.1016/j.crneur.2024.100129 [paper, repository]

Cellular mechanisms of cooperative context-sensitive predictive inference.

Journal: Current research in neurobiology

Authors' code: Zenodo 8380094 (CC-BY-4.0)

Status: empty repository

[28528] doi:10.1016/j.isci.2024.109743 [paper]

Cell-type-specific representation of spatial context in the rat prefrontal cortex.

Journal: iScience

Status: code on request

[28529] doi:10.1016/j.nicl.2024.103605 [paper, repository]

Profiling functional networks identify activation of corticostriatal connectivity in ET patients after MRgFUS thalamotomy.

Journal: NeuroImage. Clinical

Authors' code: louxin-lab (no license), pyecharts/pyecharts (MIT)

Status: code verified, 137 files readable

[28530] doi:10.1017/s1355617724000158 [paper, repository]

Development and validation of a nonverbal consensus-based semantic memory paradigm in patients with epilepsy.

Journal: Journal of the International Neuropsychological Society : JINS

Authors' code: Kleen-Lab/ViSATUI (no license)

Status: empty repository, 1 file readable

[28531] doi:10.1038/s41380-024-02528-2 [paper, repository]

Erythropoietin restrains the inhibitory potential of interneurons in the mouse hippocampus.

Journal: Molecular psychiatry

Authors' code: Zenodo 10844427 (CC-BY-4.0)

Status: code verified, 1 file readable

[28532] doi:10.1038/s41467-024-47185-9 [paper, repository]

Microenvironmental reorganization in brain tumors following radiotherapy and recurrence revealed by hyperplexed immunofluorescence imaging.

Journal: Nature communications

Authors' code: Zenodo 10778429 (CC-BY-4.0), jhausserlab/HiFiAlignmentTool (MIT)

Status: code verified, 11 files readable, 9 matches

[28533] doi:10.1038/s41467-024-47442-x [paper, repository]

Optogenetic control of mRNA condensation reveals an intimate link between condensate material properties and functions.

Journal: Nature communications

Authors' code: MinLeeKR/optoMCP-FUS (MIT)

Status: code verified, 5 files readable

[28534] doi:10.1038/s41467-024-47570-4 [paper, repository]

Conjunctive encoding of exploratory intentions and spatial information in the hippocampus.

Journal: Nature communications

Authors' code: daharoni/Miniscope_DAQ_Software (MIT), daharoni/Miniscope_Analysis (MIT), ZhouNinglab/Conjunctive-encoding-of-exploratory-intentions-and-spatial-information-in-the-hippocampus (CC0-1.0)

Status: code verified, 108 files readable, 5 matches

[28535] doi:10.1038/s41592-024-02239-0 [paper, repository]

Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice.

Journal: Nature methods

Authors' code: lh3/hickit (no license), tanlongzhi/dip-c (no license), open2c/cooltools (MIT), koszullab/chromosight (MIT), zhang-jiankun/LiMCA (MIT), sunneyxielab/METATAC_pipeline (no license), figshare 24572686 (CC-BY-4.0)

Status: code verified, 295 files readable, 12 matches

[28536] doi:10.1073/pnas.2303664121 [paper, repository]

Brain-derived neurotrophic factor scales presynaptic calcium transients to modulate excitatory neurotransmission.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: camilleswang/iGluSnFR-Analysis (GPL-3.0)

Status: empty repository, 2 files readable

[28537] doi:10.1073/pnas.2307814121 [paper, data]

Reversal of &lt;i&gt;C9orf72&lt;/i&gt; mutation-induced transcriptional dysregulation and pathology in cultured human neurons by allele-specific excision.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[28538] doi:10.1073/pnas.2400086121 [paper, repository]

How small changes to one eye's retinal image can transform the perceived shape of a very familiar object.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10834940 (CC-BY-4.0), eacooper/shapeillusion (no license)

Status: code verified, 22 files readable, 2 matches

[28539] doi:10.1089/neu.2023.0650 [paper]

Beneficial Effects of Human Schwann Cell-Derived Exosomes in Mitigating Secondary Damage After Penetrating Ballistic-Like Brain Injury.

Journal: Journal of neurotrauma

Status: code on request

[28540] doi:10.1093/braincomms/fcae134 [paper]

Synaptic alterations associated with disrupted sensory encoding in a mouse model of tauopathy.

Journal: Brain communications

Status: code on request

[28541] doi:10.1093/sleepadvances/zpae023 [paper]

Midpoint of sleep is associated with sleep quality in older adults with and without symptomatic Alzheimer's disease.

Journal: Sleep advances : a journal of the Sleep Research Society

Status: code on request

[28542] doi:10.1097/gme.0000000000002347 [paper, data]

Dorsal brain activity reflects the severity of menopausal symptoms.

Journal: Menopause (New York, N.Y.)

Status: data only, 1 dataset cited

[28543] doi:10.1101/2024.04.12.24305603 [paper, repository]

Automated quality control of T1-weighted brain MRI scans for clinical research: methods comparison and design of a quality prediction classifier

Journal: medRxiv (preprint)

Authors' code: Zenodo 11389725 (Apache-2.0), Zenodo 11389726 (Apache-2.0)

Status: code verified, 4 files readable

[28544] doi:10.1152/ajpcell.00547.2023 [paper, data]

Decoding the neurotoxic effects of propofol: insights into the RARα-Snhg1-Bdnf regulatory cascade.

Journal: American journal of physiology. Cell physiology

Status: data only, 1 dataset cited

[28545] doi:10.1162/imag_a_00128 [paper, repository]

High performers demonstrate greater neural synchrony than low performers across behavioral domains.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: jwcarr/mantel (MIT), tchamberlain/nn_annak (no license)

Status: code verified, 16 files readable

[28546] doi:10.3389/fphys.2024.1373234 [paper, data]

Multiple faces of stress in the zebrafish (<i>Danio rerio</i>) brain.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[28547] doi:10.3389/fpsyt.2024.1375492 [paper, data]

Zmiz1 is a novel regulator of brain development associated with autism and intellectual disability.

Journal: Frontiers in psychiatry

Status: data only, 3 datasets cited

[28548] doi:10.3390/ijms25084354 [paper, data]

AAV-Mediated CAG-Targeting Selectively Reduces Polyglutamine-Expanded Protein and Attenuates Disease Phenotypes in a Spinocerebellar Ataxia Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[28549] doi:10.7150/ijbs.91389 [paper, data]

Muscularis macrophages controlled by NLRP3 maintain the homeostasis of excitatory neurons.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

[28550] doi:10.7554/elife.91269 [paper, data]

Tissue-specific <i>O-</i>GlcNAcylation profiling identifies substrates in translational machinery in <i>Drosophila</i> mushroom body contributing to olfactory learning.

Journal: eLife

Status: data only, 2 datasets cited

[28551] doi:10.7717/peerj.17024 [paper, data]

GPR27 expression correlates with prognosis and tumor progression in gliomas.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 14 April 2024 (1 paper)

[28552] doi:10.3390/pharmaceutics16040540 [paper, data]

Comprehensive Therapeutic Approaches to Tuberculous Meningitis: Pharmacokinetics, Combined Dosing, and Advanced Intrathecal Therapies.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

Saturday, 13 April 2024 (8 papers)

[28553] doi:10.1007/s00406-024-01804-0 [paper]

Criminal behavior in alcohol-related dementia and Wernicke-Korsakoff syndrome: a Nationwide Register Study.

Journal: European archives of psychiatry and clinical neuroscience

Status: code on request

[28554] doi:10.1038/s41386-024-01859-6 [paper]

In vivo translocator protein in females with autism spectrum disorder: a pilot study.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: code on request

[28555] doi:10.1038/s41531-024-00697-z [paper]

GUCY2C signaling limits dopaminergic neuron vulnerability to toxic insults.

Journal: NPJ Parkinson's disease

Status: code on request

[28556] doi:10.1038/s41531-024-00702-5 [paper]

Grey matter networks in women and men with dementia with Lewy bodies.

Journal: NPJ Parkinson's disease

Status: code on request

[28557] doi:10.1038/s41597-024-03241-z [paper, data]

Open access EEG dataset of repeated measurements from a single subject for microstate analysis.

Journal: Scientific data

Status: data only, 1 dataset cited

[28558] doi:10.1038/s41598-024-58648-w [paper]

Adolescents rats engage the orbitofrontal-striatal pathway differently than adults during impulsive actions.

Journal: Scientific reports

Status: code on request

[28559] doi:10.1038/s41598-024-58870-6 [paper, data]

MiRNAs from the Dlk1-Dio3 locus and miR-224/452 cluster contribute to glioblastoma tumor heterogeneity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28560] doi:10.17912/micropub.biology.001082 [paper, repository]

OptoChamber: A Low-cost, Easy-to-Make, Customizable, and Multi-Chambered Electronic Device for Applying Optogenetic Stimulation to Larval <i>Drosophila melanogaster</i>.

Journal: microPublication biology

Authors' code: MichaelKann/Optogenetics-Chamber (MIT)

Status: empty repository, 2 files readable

Friday, 12 April 2024 (27 papers)

[28561] doi:10.1016/j.cdnut.2024.102158 [paper]

Effects of a Flavonoid-Rich Blackcurrant Beverage on Markers of the Gut-Brain Axis in Healthy Females: Secondary Findings From a 4-Week Randomized Crossover Control Trial.

Journal: Current developments in nutrition

Status: code on request

[28562] doi:10.1016/j.celrep.2024.114068 [paper, repository]

Distributed X chromosome inactivation in brain circuitry is associated with X-linked disease penetrance of behavior.

Journal: Cell reports

Authors' code: Zenodo 10815678 (CC-BY-4.0), AllenInstitute/chromosome-network-modeling (no license)

Status: code verified, 4 files readable, 2 matches

[28563] doi:10.1016/j.heliyon.2024.e28876 [paper]

Translatome and transcriptome profiling of neonatal mice hippocampus exposed to sevoflurane anesthesia.

Journal: Heliyon

Status: data only

[28564] doi:10.1016/j.ynirp.2024.100201 [paper, repository]

Associations of behavioral problems with white matter circuits connecting to the frontal lobes in school-aged children born at term and preterm.

Journal: Neuroimage. Reports

Authors' code: vistalab (no license)

Status: code verified

[28565] doi:10.1038/s12276-024-01204-3 [paper]

Central neurocytoma exhibits radial glial cell signatures with FGFR3 hypomethylation and overexpression.

Journal: Experimental & molecular medicine

Status: data only

[28566] doi:10.1038/s41467-024-47098-7 [paper, repository]

Collective relational inference for learning heterogeneous interactions.

Journal: Nature communications

Authors' code: gitlab.ethz.ch/cmbm-public/toolboxes/cri (MIT)

Status: code verified, 14 files readable, 4 matches

[28567] doi:10.1038/s41467-024-47361-x [paper, repository]

A hippocampus-accumbens code guides goal-directed appetitive behavior.

Journal: Nature communications

Authors' code: obarnstedt/dHPC-NAc (GPL-3.0)

Status: code verified, 11 files readable, 5 matches

[28568] doi:10.1038/s41467-024-47491-2 [paper, repository]

Neurocomputational mechanisms involved in adaptation to fluctuating intentions of others.

Journal: Nature communications

Authors' code: Zenodo 10299140 (CC-BY-4.0), remiphilipp/Mixture_intention (no license)

Status: code verified, 46 files readable, 2 matches

[28569] doi:10.1038/s41467-024-47515-x [paper, repository]

Stimulus encoding by specific inactivation of cortical neurons.

Journal: Nature communications

Authors' code: Zenodo 8423311 (other-open), Zenodo 7765050 (other-open), Zenodo 8422691 (other-open), perezortegaj/mousee (GPL-3.0), perezortegaj/moussionenergy (GPL-3.0), perezortegaj/xsembles2p (GPL-3.0)

Status: code verified, 291 files readable, 6 matches

[28570] doi:10.1038/s41467-024-47555-3 [paper, repository]

Subthalamic stimulation modulates context-dependent effects of beta bursts during fine motor control.

Journal: Nature communications

Authors' code: manubange/SpiralBeta (GPL-3.0), Zenodo 10795009 (CC-BY-4.0)

Status: code verified, 50 files readable, 6 matches

[28571] doi:10.1038/s41531-024-00694-2 [paper, data]

Early deficits in an in vitro striatal microcircuit model carrying the Parkinson's GBA-N370S mutation.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[28572] doi:10.1038/s41539-024-00243-9 [paper, repository]

Evidence for a competitive relationship between executive functions and statistical learning.

Journal: NPJ science of learning

Authors' code: OSF 2asnb (no license)

Status: code verified, 5 files readable, 3 matches

[28573] doi:10.1038/s41597-024-03222-2 [paper, repository]

A multimodal physiological dataset for driving behaviour analysis.

Journal: Scientific data

Authors' code: zwqzwq0/MPDB (no license)

Status: code verified, 9 files readable, 6 matches

[28574] doi:10.1038/s41598-024-55769-0 [paper, repository]

Fast learning without synaptic plasticity in spiking neural networks.

Journal: Scientific reports

Authors' code: anandtrex/fast-snn-learning (no license)

Status: dead link

[28575] doi:10.1126/sciadv.adf7001 [paper, repository]

The autism susceptibility kinase, TAOK2, phosphorylates eEF2 and modulates translation.

Journal: Science advances

Authors' code: TabithaRuecker/TaoK2beta (no license)

Status: empty repository, 1 file readable

[28576] doi:10.1126/sciadv.adm8246 [paper, data]

Cortico-cerebellar coordination facilitates neuroprosthetic control.

Journal: Science advances

Status: data only, 1 dataset cited

[28577] doi:10.1186/s12868-024-00865-0 [paper, repository]

The effects of multi-colour light filtering glasses on human brain wave activity.

Journal: BMC neuroscience

Authors' code: Neuro-Tools (no license)

Status: code verified

[28578] doi:10.1186/s12915-024-01879-0 [paper, repository]

Targeting of REST with rationally-designed small molecule compounds exhibits synergetic therapeutic potential in human glioblastoma cells.

Journal: BMC biology

Authors' code: z0on/tag-based_RNAseq (no license), supp:PMC11015551/12915_2024_1879_MOESM12_ESM.r (no license)

Status: code verified, 31 files readable, 3 matches

[28579] doi:10.1186/s12974-024-03091-x [paper, data]

Nigrostriatal degeneration determines dynamics of glial inflammatory and phagocytic activity.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[28580] doi:10.1186/s13195-024-01432-9 [paper, repository]

Subclinical epileptiform discharges in Alzheimer's disease are associated with increased hippocampal blood flow.

Journal: Alzheimer's research & therapy

Authors' code: MarkVestergaard/PCMCalculator (MIT)

Status: code verified, 3 files readable, 2 matches

[28581] doi:10.1523/eneuro.0097-24.2024 [paper, repository]

The Mouse Inferior Colliculus Responds Preferentially to Non-Ultrasonic Vocalizations.

Journal: eNeuro

Authors' code: TytoLogy/NICal (no license)

Status: code verified, 70 files readable

[28582] doi:10.3389/fninf.2024.1330875 [paper, repository]

<i>ExaFlexHH</i>: an exascale-ready, flexible multi-FPGA library for biologically plausible brain simulations.

Journal: Frontiers in neuroinformatics

Authors' code: c7859/neurocomputing-lab/Inferior_OliveEMC/ExaFlexHH (LGPL-3.0)

Status: code verified, 28 files readable, 4 matches

[28583] doi:10.3389/fnins.2024.1237245 [paper, repository]

CiftiStorm pipeline: facilitating reproducible EEG/MEG source connectomics.

Journal: Frontiers in neuroscience

Authors' code: CCC-members/CiftiStorm (no license)

Status: code verified, 558 files readable, 17 matches

[28584] doi:10.3389/fonc.2024.1347363 [paper, data]

A deep learning model for the localization and extraction of brain tumors from MR images using YOLOv7 and grab cut algorithm.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[28585] doi:10.3389/fphar.2024.1389440 [paper]

Small molecule drug discovery for glioblastoma treatment based on bioinformatics and cheminformatics approaches.

Journal: Frontiers in pharmacology

Status: data only

[28586] doi:10.3390/brainsci14040375 [paper, data]

A Data Augmentation Method for Motor Imagery EEG Signals Based on DCGAN-GP Network.

Journal: Brain sciences

Status: data only, 1 dataset cited

[28587] doi:10.7554/elife.89507 [paper, repository]

Deciphering molecular heterogeneity and dynamics of human hippocampal neural stem cells at different ages and injury states.

Journal: eLife

Authors' code: BigreyR/snRNA-seq_hippocampus (BSD-3-Clause)

Status: code verified, 3 files readable, 24 matches

Thursday, 11 April 2024 (28 papers)

[28588] doi:10.1002/acn3.52047 [paper, data]

A multi-omics study to monitor senescence-associated secretory phenotypes of Alzheimer's disease.

Journal: Annals of clinical and translational neurology

Status: data only, 2 datasets cited

[28589] doi:10.1007/s12028-024-01983-7 [paper, repository]

Covert Consciousness in Acute Brain Injury Revealed by Automated Pupillometry and Cognitive Paradigms.

Journal: Neurocritical care

Authors' code: lilleoel/clintools (other), cran.r-project.org/web/packages (no license), Zenodo 6627565 (CC-BY-4.0)

Status: code verified, 32 files readable

[28590] doi:10.1016/j.celrep.2024.114100 [paper, repository]

Morpho-electric diversity of human hippocampal CA1 pyramidal neurons.

Journal: Cell reports

Authors' code: ElineJasmijn/Morphys (GPL-3.0), INF-Rene/Morphys (GPL-3.0)

Status: code verified, 109 files readable, 4 matches

[28591] doi:10.1016/j.dcn.2024.101377 [paper, repository]

Examining neural responses to anticipating or receiving monetary rewards and the development of binge eating in youth. A registered report using data from the Adolescent Brain Cognitive Development (ABCD) study.

Journal: Developmental cognitive neuroscience

Authors' code: DCAN-Labs/abcd-hcp-pipelines (no license)

Status: dead link

[28592] doi:10.1016/j.xpro.2024.102991 [paper, repository]

Protocol for the culturing of primary hippocampal mouse neurons for functional in vitro studies.

Journal: STAR protocols

Authors' code: dcolam/Cluster-Analysis-Plugin (MIT), PDKlab/Exocytose-EventsDetection (no license)

Status: code verified, 28 files readable, 1 match

[28593] doi:10.1021/acsomega.4c00200 [paper]

Investigating the Mechanistic of Danhong Injection in Brain Damage Caused by Cardiac I/R Injury via Bioinformatics, Computer Simulation, and Experimental Validation.

Journal: ACS omega

Status: data only

[28594] doi:10.1038/s41422-024-00956-x [paper, repository]

System-level time computation and representation in the suprachiasmatic nucleus revealed by large-scale calcium imaging and machine learning.

Journal: Cell research

Authors' code: RafaWong/SCN-Research-Project (no license)

Status: code verified, 40 files readable, 9 matches

[28595] doi:10.1038/s41467-024-47263-y [paper, repository]

Multisensory flicker modulates widespread brain networks and reduces interictal epileptiform discharges.

Journal: Nature communications

Authors' code: singerlabgt/Behavioral_FlickerMasterTask (no license), pennmem/voxTool (MIT), dabi.loni.usc.edu (no license), singerlabgt/MultisensoryFlickerHumanIntracranial (MIT)

Status: code verified, 98 files readable, 24 matches

[28596] doi:10.1038/s41467-024-47501-3 [paper, repository]

Adaptive expansion of ERVK solo-LTRs is associated with Passeriformes speciation events.

Journal: Nature communications

Authors' code: ChenGuangji/BirdsSoloLTRs (MIT), Zenodo 10812365 (CC-BY-4.0)

Status: code verified, 42 files readable, 11 matches

[28597] doi:10.1038/s41467-024-47511-1 [paper, repository]

Multiplicative joint coding in preparatory activity for reaching sequence in macaque motor cortex.

Journal: Nature communications

Authors' code: Twwang13/Double_Reach (no license)

Status: code verified, 27 files readable, 4 matches

[28598] doi:10.1038/s41467-024-47552-6 [paper, repository]

Neural signatures of indirect pathway activity during subthalamic stimulation in Parkinson's disease.

Journal: Nature communications

Authors' code: figshare 23498643 (CC-BY-4.0), Zenodo 10697674 (CC-BY-4.0), Zenodo 10709777 (CC-BY-4.0), Zenodo 10700739 (CC-BY-4.0), toronto-tnbs/erna (no license), nsbspl/erna-abstract-model (MIT), toronto-tnbs/erna_heatmap (no license)

Status: code verified, 14 files readable, 1 match

[28599] doi:10.1038/s41592-024-02237-2 [paper, data]

brainlife.io: a decentralized and open-source cloud platform to support neuroscience research.

Journal: Nature methods

Status: data only, 5 datasets cited

[28600] doi:10.1038/s41598-024-57585-y [paper]

Increased anger and stress and heightened connectivity between IFG and vmPFC in victims during social interaction.

Journal: Scientific reports

Status: code on request

[28601] doi:10.1038/s41598-024-58788-z [paper, data]

A histological and diceCT-derived 3D reconstruction of the avian visual thalamofugal pathway.

Journal: Scientific reports

Status: data only, 2 datasets cited

[28602] doi:10.1038/s41598-024-59288-w [paper]

Convolutional neural network algorithm trained on lumbar spine radiographs to predict outcomes of transforaminal epidural steroid injection for lumbosacral radicular pain from spinal stenosis.

Journal: Scientific reports

Status: code on request

[28603] doi:10.1038/s41746-024-01084-x [paper, repository]

Whole-heart electromechanical simulations using Latent Neural Ordinary Differential Equations.

Journal: NPJ digital medicine

Authors' code: MatteoSalvador/cardioEM-4CH (MIT)

Status: code verified, 15 files readable, 2 matches

[28604] doi:10.1038/s43856-024-00496-w [paper, repository]

Convolutional neural network-based classification of glaucoma using optic radiation tissue properties.

Journal: Communications medicine

Authors' code: 36000/glauc_paper_scripts (no license), Zenodo 10459961 (CC-BY-4.0)

Status: code verified, 17 files readable, 2 matches

[28605] doi:10.1038/s44319-024-00123-8 [paper, data]

Mcph1, mutated in primary microcephaly, is also crucial for erythropoiesis.

Journal: EMBO reports

Status: data only, 1 dataset cited

[28606] doi:10.1073/pnas.2317083121 [paper, repository]

Hox gene-specific cellular targeting using split intein Trojan exons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.6084/m9.figshare.c.7018752.v1 (no license)

Status: code found, still to be checked

[28607] doi:10.1088/1741-2552/ad357f [paper, data]

Computational modeling of dorsal root ganglion stimulation using an Injectrode.

Journal: Journal of neural engineering

Status: data only, 1 dataset cited

[28608] doi:10.1089/neur.2023.0116 [paper, repository]

The Australian Traumatic Brain Injury Initiative: Statement of Working Principles and Rapid Review of Methods to Define Data Dictionaries for Neurological Conditions.

Journal: Neurotrauma reports

Authors' code: OSF n9xbh (no license)

Status: code found, still to be checked

[28609] doi:10.1186/s13195-024-01449-0 [paper, repository]

Biophysical models applied to dementia patients reveal links between geographical origin, gender, disease duration, and loss of neural inhibition.

Journal: Alzheimer's research & therapy

Authors' code: concog/fastdmf (BSD-3-Clause)

Status: code verified, 285 files readable, 4 matches

[28610] doi:10.3389/fphys.2024.1349111 [paper, data]

BT-CNN: a balanced binary tree architecture for classification of brain tumour using MRI imaging.

Journal: Frontiers in physiology

Status: data only, 3 datasets cited

[28611] doi:10.3389/fpsyg.2024.1371035 [paper, data]

Compensatory brain activity pattern is not present in older adults during the n-back task performance-Findings based on EEG frequency analysis.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[28612] doi:10.3389/fpsyt.2024.1364201 [paper, data]

Unraveling the enigma: housekeeping gene <i>Ugt1a7c</i> as a universal biomarker for microglia.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[28613] doi:10.3390/genes15040483 [paper, data]

LncRNA NDUFA6-DT: A Comprehensive Analysis of a Potential LncRNA Biomarker and Its Regulatory Mechanisms in Gliomas.

Journal: Genes

Status: data only, 1 dataset cited

[28614] doi:10.3390/ijms25084235 [paper, repository]

Computational Modeling of Extrasynaptic NMDA Receptors: Insights into Dendritic Signal Amplification Mechanisms.

Journal: International journal of molecular sciences

Authors' code: dropbox.com/scl/fi (no license)

Status: code verified

[28615] doi:10.7554/elife.86812 [paper, repository]

Fetal influence on the human brain through the lifespan.

Journal: eLife

Authors' code: lcbc-uio/paper-birthweight-brainchange-2022 (no license)

Status: code verified, 340 files readable, 6 matches

Wednesday, 10 April 2024 (32 papers)

[28616] doi:10.1002/mco2.540 [paper, data]

Dynamic changes in lysosome-related pathways in APP/PS1 mice with aging.

Journal: MedComm

Status: data only, 1 dataset cited

[28617] doi:10.1007/s00401-024-02721-1 [paper, data]

Rare genetic variation in fibronectin 1 (FN1) protects against APOEε4 in Alzheimer's disease.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[28618] doi:10.1007/s00422-024-00986-z [paper, repository]

Empirical modeling and prediction of neuronal dynamics.

Journal: Biological cybernetics

Authors' code: pau-3i8/Wavenet_research (MIT)

Status: code verified, 15 files readable

[28619] doi:10.1007/s10548-024-01044-4 [paper, repository]

Adapted Beamforming: A Robust and Flexible Approach for Removing Various Types of Artifacts from TMS-EEG Data.

Journal: Brain topography

Authors' code: jmetsoma/beamforming-based_artifact_removal (GPL-3.0)

Status: code verified, 8 files readable, 4 matches

[28620] doi:10.1007/s12282-024-01565-7 [paper]

Sacituzumab govitecan in metastatic triple-negative breast cancer patients treated at Institut Curie Hospitals: efficacy, safety, and impact of brain metastases.

Journal: Breast cancer (Tokyo, Japan)

Status: code on request

[28621] doi:10.1016/j.bpj.2024.04.007 [paper]

A molecular switch in RCK2 triggers sodium-dependent activation of K_Na1.1 (KCNT1) potassium channels.

Journal: Biophysical journal

Status: code on request

[28622] doi:10.1038/s41467-024-46787-7 [paper, repository]

Complex activity and short-term plasticity of human cerebral organoids reciprocally connected with axons.

Journal: Nature communications

Authors' code: Ceramic-Blue-Tim/in-silico-connected-organoid-model (GPL-3.0), utokyoIkeuchilab/complex_activity_data_analysis (no license)

Status: code verified, 169 files readable, 8 matches

[28623] doi:10.1038/s41467-024-47440-z [paper, repository]

Integrated proteomics reveals autophagy landscape and an autophagy receptor controlling PKA-RI complex homeostasis in neurons.

Journal: Nature communications

Authors' code: JUMPSuite/JUMP (no license), Zenodo 10778288 (CC-BY-4.0)

Status: code verified, 240 files readable, 3 matches

[28624] doi:10.1038/s41467-024-47459-2 [paper, repository]

A primary sensory cortical interareal feedforward inhibitory circuit for tacto-visual integration.

Journal: Nature communications

Authors' code: simonweiler/cross_modal_SSp_VISp (no license)

Status: code verified, 8 files readable, 2 matches

[28625] doi:10.1038/s41467-024-47510-2 [paper]

Multiple processes of vocal sensory-motor interaction in primate auditory cortex.

Journal: Nature communications

Status: code on request

[28626] doi:10.1038/s41467-024-47546-4 [paper, repository]

Auditory cortex conveys non-topographic sound localization signals to visual cortex.

Journal: Nature communications

Authors' code: camille-lab/ACaxonsSpace (no license)

Status: code verified, 40 files readable, 6 matches

[28627] doi:10.1038/s41539-024-00237-7 [paper, repository]

Investigating lexical categorization in reading based on joint diagnostic and training approaches for language learners.

Journal: NPJ science of learning

Authors' code: OSF 3hydt (no license)

Status: code verified, 8 files readable, 6 matches

[28628] doi:10.1038/s41593-024-01619-1 [paper, data]

Messenger RNA transport on lysosomal vesicles maintains axonal mitochondrial homeostasis and prevents axonal degeneration.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[28629] doi:10.1038/s41598-024-58002-0 [paper, repository]

Spindle oscillations in communicating axons within a reconstituted hippocampal formation are strongest in CA3 without thalamus.

Journal: Scientific reports

Authors' code: Brewer-Neurolab/Lassers-2023-Axon-Flow (MIT), Brewer-Neurolab/Wang-Spindles-in-Axons (MIT)

Status: code verified, 141 files readable, 7 matches

[28630] doi:10.1038/s41598-024-58031-9 [paper, repository]

Machine learning reveals differential effects of depression and anxiety on reward and punishment processing.

Journal: Scientific reports

Authors' code: abelowska/bluishO (MIT)

Status: code verified, 8 files readable, 4 matches

[28631] doi:10.1038/s41598-024-58904-z [paper, data]

Transcriptomic alterations in cortical astrocytes following the development of post-traumatic epilepsy.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28632] doi:10.1038/s42003-024-06018-7 [paper]

Microtubule polarity determines the lineage of embryonic neural precursor in zebrafish spinal cord.

Journal: Communications biology

Status: code on request

[28633] doi:10.1038/s44319-024-00131-8 [paper, data]

Foxp1 suppresses cortical angiogenesis and attenuates HIF-1alpha signaling to promote neural progenitor cell maintenance.

Journal: EMBO reports

Status: data only, 1 dataset cited

[28634] doi:10.1073/pnas.2318444121 [paper, repository]

Modeling of brain efflux: Constraints of brain surfaces.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 10582168 (CC-BY-4.0), peterarbork/glymphatics1d-pnas2024 (MIT)

Status: code verified, 36 files readable, 1 match

[28635] doi:10.1080/01652176.2024.2338385 [paper, data]

Fatal tick-borne encephalitis virus infection in Dalmatian puppy-dogs after putative vector independent transmission.

Journal: The veterinary quarterly

Status: data only, 1 dataset cited

[28636] doi:10.1093/braincomms/fcae128 [paper, repository]

The subcortical default mode network and Alzheimer's disease: a systematic review and meta-analysis.

Journal: Brain communications

Authors' code: Sleosoz/subcortical-DMN-and-Alzheimer (no license)

Status: empty repository, 1 file readable

[28637] doi:10.1093/braincomms/fcae129 [paper, repository]

Bayesian modelling disentangles language versus executive control disruption in stroke.

Journal: Brain communications

Authors' code: jakubkopal/bayesian_stroke (MIT)

Status: code verified, 7 files readable, 13 matches

[28638] doi:10.1098/rsos.231762 [paper, repository]

Advancing multimodal medical image fusion: an adaptive image decomposition approach based on multilevel Guided filtering.

Journal: Royal Society open science

Authors' code: S-M-Cloud/Advancing-multimodal-medical-image-fusion (no license)

Status: code verified, 5 files readable

[28639] doi:10.1126/sciadv.adj0400 [paper, repository]

A digital twin of the infant microbiome to predict neurodevelopmental deficits.

Journal: Science advances

Authors' code: pypi.org/project/qbiome (no license), zeroknowledgediscovery/qbiome (MIT), Zenodo 7459014 (other-open)

Status: code verified, 69 files readable, 7 matches

[28640] doi:10.1162/imag_a_00147 [paper]

Assessment of white matter microstructure integrity in subacute postconcussive vestibular dysfunction using NODDI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[28641] doi:10.1186/s13287-024-03700-9 [paper, repository]

An integrated toolkit for human microglia functional genomics.

Journal: Stem cell research & therapy

Authors' code: jasoncngo/IPSC-Derived-Microglia (MIT)

Status: code verified, 18 files readable, 2 matches

[28642] doi:10.1371/journal.pdig.0000479 [paper, repository]

Deep learning to predict rapid progression of Alzheimer's disease from pooled clinical trials: A retrospective study.

Journal: PLOS digital health

Authors' code: xiaotian0328/AD-Rapid-Progression-Prediction (MIT)

Status: code verified, 9 files readable

[28643] doi:10.1371/journal.pone.0297669 [paper, repository]

Fibration symmetries and cluster synchronization in the Caenorhabditis elegans connectome.

Journal: PloS one

Authors' code: makselab/C.-elegans_locomotive_simulator (MIT), makselab/fibrationSymmetries (MIT)

Status: code verified, 17 files readable, 5 matches

[28644] doi:10.1523/jneurosci.0885-23.2024 [paper, repository]

Human Prosocial Preferences Are Related to Slow-Wave Activity in Sleep.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: lorenarrgianotti/ProsocialityAndSWA (no license)

Status: code verified, 5 files readable, 3 matches

[28645] doi:10.3389/fncel.2024.1369047 [paper, repository]

Inhibiting presynaptic calcium channel motility in the auditory cortex suppresses synchronized input processing.

Journal: Frontiers in cellular neuroscience

Authors' code: CortXplorer/Deane2024_FrontCellNeurosci (no license)

Status: code verified, 34 files readable, 6 matches

[28646] doi:10.3389/fnmol.2024.1365978 [paper, repository]

Expression characteristics and potential function of non-coding RNA in mouse cortical cells.

Journal: Frontiers in molecular neuroscience

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 1 match

[28647] doi:10.7554/elife.96048 [paper, data]

KIS counteracts PTBP2 and regulates alternative exon usage in neurons.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 9 April 2024 (30 papers, 25 on this page)

[28648] doi:10.1002/jez.b.23251 [paper, repository]

The domestication of the larynx: The neural crest connection.

Journal: Journal of experimental zoology. Part B, Molecular and developmental evolution

Authors' code: Zenodo 14967301 (MIT)

Status: code verified, 2 files readable

[28649] doi:10.1016/j.celrep.2024.113986 [paper]

Selective plasticity of layer 2/3 inputs onto distal forelimb controlling layer 5 corticospinal neurons with skilled grasp motor training.

Journal: Cell reports

Status: code on request

[28650] doi:10.1016/j.isci.2024.109691 [paper, repository]

Sodium salicylate improves detection of amplitude-modulated sound in mice.

Journal: iScience

Authors' code: Zenodo 10843389 (CC-BY-4.0), aaronbwong/salicylateonam (MIT), cortex-lab/allenCCF (no license)

Status: code verified, 153 files readable, 10 matches

[28651] doi:10.1016/j.isci.2024.109692 [paper]

Mapping brain state-dependent sensory responses across the mouse cortex.

Journal: iScience

Status: code on request

[28652] doi:10.1016/j.isci.2024.109695 [paper, repository]

Pyramidal and parvalbumin neurons modulate the process of electroacupuncture stimulation for stroke rehabilitation.

Journal: iScience

Authors' code: Zenodo 10863015 (CC-BY-4.0)

Status: empty repository

[28653] doi:10.1016/j.isci.2024.109698 [paper]

Asparagine endopeptidase deficiency mitigates radiation-induced brain injury by suppressing microglia-mediated neuronal senescence.

Journal: iScience

Status: code on request

[28654] doi:10.1021/acs.jpcb.4c00174 [paper, repository]

RASP: Optimal Single Puncta Detection in Complex Cellular Backgrounds.

Journal: The journal of physical chemistry. B

Authors' code: Zenodo 10475643 (CC-BY-4.0), Zenodo 1040729 (other-open), binfu0728/RASP-A-new-method-for-single-puncta-detection-in-complex-cellular-backgrounds (no license), Zenodo 10688132 (CC-BY-4.0), TheLeeLab/pyRASP (MIT), inventionate/synthesise (MIT)

Status: code verified, 97 files readable, 8 matches

[28655] doi:10.1021/acsomega.3c09936 [paper, data]

Ultralow Power Electronic Analog of a Biological Fitzhugh-Nagumo Neuron.

Journal: ACS omega

Status: data only, 1 dataset cited

[28656] doi:10.1038/s41467-024-47443-w [paper, repository]

Viability leads to the emergence of gait transitions in learning agile quadrupedal locomotion on challenging terrains.

Journal: Nature communications

Authors' code: MiladShafiee/DeepTransition (MIT), figshare 25331872 (MIT)

Status: code verified, 92 files readable, 5 matches

[28657] doi:10.1038/s41598-024-58278-2 [paper, data]

SNORA69 is up-regulated in the lateral habenula of individuals with major depressive disorder.

Journal: Scientific reports

Status: data only, 1 dataset cited

[28658] doi:10.1038/s41598-024-58380-5 [paper, repository]

Brownian processes in human motor control support descending neural velocity commands.

Journal: Scientific reports

Authors' code: jameshermus/brownianprocess (no license), Zenodo 10059390 (CC-BY-4.0)

Status: code verified, 10 files readable, 6 matches

[28659] doi:10.1038/s41598-024-59061-z [paper]

Activation of lateral preoptic neurons is associated with nest-building in male mice.

Journal: Scientific reports

Status: code on request

[28660] doi:10.1073/pnas.2304704121 [paper, repository]

Childhood maltreatment influences adult brain structure through its effects on immune, metabolic, and psychosocial factors.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: s-orellana/UKB_CM_Brain (no license)

Status: code verified, 29 files readable, 5 matches

[28661] doi:10.1073/pnas.2309211121 [paper, data]

A hydrophobic groove in secretagogin allows for alternate interactions with SNAP-25 and syntaxin-4 in endocrine tissues.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[28662] doi:10.1073/pnas.2311040121 [paper, repository]

Top-down modulation in canonical cortical circuits with short-term plasticity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: comp-neural-circuits/top-down-modulation-with-iSTP (MIT), comp-neural-circuits/top-downmodulation-with-iSTP (no license)

Status: code verified, 27 files readable, 10 matches

[28663] doi:10.1073/pnas.2316150121 [paper]

Distinct lateral hypothalamic CaMKIIα neuronal populations regulate wakefulness and locomotor activity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[28664] doi:10.1093/jbmrpl/ziae049 [paper, data]

Cortical and trabecular mechanical properties in the femoral neck vary differently with changes in bone mineral density.

Journal: JBMR plus

Status: data only, 1 dataset cited

[28665] doi:10.1101/2024.04.08.588566 [paper, data]

Maturation-informed synthetic Magnetic Resonance Images of the Developing Human Fetal Brain

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[28666] doi:10.1186/s12964-024-01567-0 [paper, repository]

Proteomic studies of VEGFR2 in human placentas reveal protein associations with preeclampsia, diabetes, gravidity, and labor.

Journal: Cell communication and signaling : CCS

Authors' code: r-project.org (no license)

Status: code verified

[28667] doi:10.1186/s13054-024-04895-2 [paper]

Outcome prediction of cardiac arrest with automatically computed gray-white matter ratio on computed tomography images.

Journal: Critical care (London, England)

Status: code on request

[28668] doi:10.1364/boe.521478 [paper, repository]

NeuroSeg-III: efficient neuron segmentation in two-photon Ca²⁺ imaging data using self-supervised learning.

Journal: Biomedical optics express

Authors' code: zimo-k/NeuroSeg3 (no license)

Status: code verified, 110 files readable, 6 matches

[28669] doi:10.1371/journal.pone.0301713 [paper, repository]

Local contribution to the somatosensory evoked potentials in rat's thalamus.

Journal: PloS one

Authors' code: Neuroinflab/kCSD-python (BSD-3-Clause), wsredniawa/LFPReconstruction (MIT)

Status: code verified, 113 files readable

[28670] doi:10.3389/fncom.2024.1209082 [paper, repository]

Understanding of facial features in face perception: insights from deep convolutional neural networks.

Journal: Frontiers in computational neuroscience

Authors' code: deepinsight/InsightFace (no license), SA21218172/Facial-Feature-Understanding-with-DCNNs (no license)

Status: code verified, 1,782 files readable, 5 matches

[28671] doi:10.3390/brainsci14040367 [paper, data]

Electroencephalographic Signal Data Augmentation Based on Improved Generative Adversarial Network.

Journal: Brain sciences

Status: data only, 1 dataset cited

[28672] doi:10.3390/jintelligence12040044 [paper, data]

Judgments of Learning Reactively Improve Memory by Enhancing Learning Engagement and Inducing Elaborative Processing: Evidence from an EEG Study.

Journal: Journal of Intelligence

Status: data only, 1 dataset cited

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