Every paper, by date: page 165

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 165 of 200: 27 April 2023 to 17 April 2023.

Thursday, 27 April 2023 (28 papers, 2 on this page)

[36737] doi:10.7554/elife.81826 [paper, repository]

Cholinergic and noradrenergic axonal activity contains a behavioral-state signal that is coordinated across the dorsal cortex.

Journal: eLife

Authors' code: lncollins91/ACh_NA_VCIN (no license)

Status: code verified, 14 files readable, 2 matches

[36738] doi:10.7717/peerj-cs.1359 [paper, repository]

Neural noiseprint transfer: a generic noiseprint-based counter forensics framework.

Journal: PeerJ. Computer science

Authors' code: kaggle.com/competitions/sp-society-camera-model-identification (no license), ahmed-elliethy/nnt (other), Zenodo 7329762 (other-open)

Status: code verified, 44 files readable, 2 matches

Wednesday, 26 April 2023 (24 papers)

[36739] doi:10.1016/j.dcn.2023.101250 [paper, repository]

Longitudinal neonatal brain development and socio-demographic correlates of infant outcomes following preterm birth.

Journal: Developmental cognitive neuroscience

Authors' code: lucyvanes/preterm-dHCP_longitudinal (no license)

Status: code verified, 5 files readable, 6 matches

[36740] doi:10.1016/j.isci.2023.106773 [paper]

Major depression-related factor NEGR1 controls salivary secretion in mouse submandibular glands.

Journal: iScience

Status: code on request

[36741] doi:10.1016/j.xpro.2023.102250 [paper]

Chemotaxis assay for evaluation of memory-like behavior in wild-type and Alzheimer's-disease-like C. elegans models.

Journal: STAR protocols

Status: code on request

[36742] doi:10.1038/s41586-023-06012-9 [paper, repository]

Long-range inhibition synchronizes and updates prefrontal task activity.

Journal: Nature

Authors' code: Zenodo 7709805 (CC-BY-4.0)

Status: code verified

[36743] doi:10.1038/s41586-023-06013-8 [paper, repository]

Multisensory learning binds neurons into a cross-modal memory engram.

Journal: Nature

Authors' code: pypi.org/project/navis (no license), navis-org/navis (GPL-3.0), natverse.org (no license), PJZO/Multisensory-learning-Engram (no license)

Status: code verified, 306 files readable, 2 matches

[36744] doi:10.1038/s41598-023-33066-6 [paper, data]

Elemental bioimaging and transcriptomics reveal unchanged gene expression in mouse cerebellum following a single injection of Gadolinium-based contrast agents.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36745] doi:10.1038/s41598-023-33318-5 [paper, repository]

Uncovering the fast, directional signal flow through the human temporal pole during semantic processing.

Journal: Scientific reports

Authors' code: bastibe/Violinplot-Matlab (BSD-3-Clause)

Status: code verified, 6 files readable

[36746] doi:10.1038/s41598-023-34021-1 [paper, data]

Identification of oxidative stress-related genes differentially expressed in Alzheimer's disease and construction of a hub gene-based diagnostic model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36747] doi:10.1101/gr.277413.122 [paper, repository]

MYT1L is required for suppressing earlier neuronal development programs in the adult mouse brain.

Journal: Genome research

Authors' code: genome.cshlp.org/lookup/suppl (no license), jdlabteam/myt1l-cut-run-paper (no license)

Status: code verified, 4 files readable, 3 matches

[36748] doi:10.1126/sciadv.adg7056 [paper, data]

Successful aging of musicians: Preservation of sensorimotor regions aids audiovisual speech-in-noise perception.

Journal: Science advances

Status: data only, 1 dataset cited

[36749] doi:10.1186/s12911-023-02174-8 [paper, data]

An early detection and segmentation of Brain Tumor using Deep Neural Network.

Journal: BMC medical informatics and decision making

Status: data only, 1 dataset cited

[36750] doi:10.1186/s12915-023-01604-3 [paper, data]

TRPM4 regulates hilar mossy cell loss in temporal lobe epilepsy.

Journal: BMC biology

Status: data only, 1 dataset cited

[36751] doi:10.1186/s12967-023-04139-x [paper, data]

A dominant variant in apoptosis-related gene XKR8 is relevant to hereditary auditory neuropathy.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[36752] doi:10.1242/dmm.049927 [paper, data]

Genetic dissection of triplicated chromosome 21 orthologs yields varying skeletal traits in Down syndrome model mice.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[36753] doi:10.1371/journal.pone.0284122 [paper, repository]

Sensorimotor cortex activity during basketball dribbling and its relation to creativity.

Journal: PloS one

Authors' code: supp:PMC10132548/pone.0284122.s001.m (no license)

Status: code verified, 1 file readable

[36754] doi:10.1523/jneurosci.1663-22.2023 [paper, repository]

Phase Alignment of Low-Frequency Neural Activity to the Amplitude Envelope of Speech Reflects Evoked Responses to Acoustic Edges, Not Oscillatory Entrainment.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: ChangLabUcsf/MEG-SlowSpeech (no license)

Status: dead link

[36755] doi:10.3389/fonc.2023.1166207 [paper]

An overview of glioblastoma multiforme and temozolomide resistance: can LC-MS-based proteomics reveal the fundamental mechanism of temozolomide resistance?

Journal: Frontiers in oncology

Status: data only

[36756] doi:10.3389/fpsyt.2023.1132996 [paper, data]

Breakdown of long-range spatial correlations of infraslow amplitude fluctuations of EEG oscillations in patients with current and past major depressive disorder.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[36757] doi:10.3390/biom13050751 [paper, repository]

5-HT6 Receptors Sex-Dependently Modulate Hippocampal Synaptic Activity through GABA Inhibition.

Journal: Biomolecules

Authors' code: Zenodo 7864762 (other-open)

Status: code verified

[36758] doi:10.3390/s23094277 [paper, data]

Electroencephalography Signal Analysis for Human Activities Classification: A Solution Based on Machine Learning and Motor Imagery.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[36759] doi:10.3390/v15051062 [paper, repository]

Noncoding RNA of Zika Virus Affects Interplay between Wnt-Signaling and Pro-Apoptotic Pathways in the Developing Brain Tissue.

Journal: Viruses

Authors' code: figshare 26113051 (CC BY + CC0)

Status: code verified, 1 file readable

[36760] doi:10.7554/elife.75726 [paper, data]

The normalization model predicts responses in the human visual cortex during object-based attention.

Journal: eLife

Status: data only, 1 dataset cited

[36761] doi:10.7554/elife.78558 [paper, data]

Macrophages regulate gastrointestinal motility through complement component 1q.

Journal: eLife

Status: data only, 1 dataset cited

[36762] doi:10.7717/peerj.15259 [paper, data]

Differential expression of some termite neuropeptides and insulin/IGF-related hormones and their plausible functions in growth, reproduction and caste determination.

Journal: PeerJ

Status: data only, 1 dataset cited

Tuesday, 25 April 2023 (28 papers)

[36763] doi:10.1002/epi4.12733 [paper, repository]

Remote effects of temporal lobe epilepsy surgery: Long-term morphological changes after surgical resection.

Journal: Epilepsia open

Authors' code: tcama/remote_effects (no license)

Status: code verified, 161 files readable, 3 matches

[36764] doi:10.1002/hbm.26311 [paper, repository]

Direct localization and delineation of human pedunculopontine nucleus based on a self-supervised magnetic resonance image super-resolution method.

Journal: Human brain mapping

Authors' code: SMILE-Lab-ShanghaiTech/Human-Pedunculopontine-Nucleus-Atlas (no license)

Status: empty repository, 1 file readable

[36765] doi:10.1007/s11042-023-15239-7 [paper, data]

Accurate detection of brain tumor using optimized feature selection based on deep learning techniques.

Journal: Multimedia tools and applications

Status: data only, 1 dataset cited

[36766] doi:10.1016/j.heliyon.2023.e15749 [paper, repository]

An exploratory simulation study and prediction model on human brain behavior and activity using an integration of deep neural network and biosensor Rabi antenna.

Journal: Heliyon

Authors' code: nhattruongpham/Deep_Brain_SigNet (MIT)

Status: code verified, 3 files readable, 1 match

[36767] doi:10.1016/j.isci.2023.106735 [paper, repository]

Neuro-inspired continual anthropomorphic grasping.

Journal: iScience

Authors' code: WanyiLi/NICAG (Apache-2.0)

Status: empty repository, 2 files readable

[36768] doi:10.1016/j.isci.2023.106744 [paper]

Multi-omics analysis of a drug-induced model of bipolar disorder in zebrafish.

Journal: iScience

Status: code on request

[36769] doi:10.1038/s41598-023-32153-y [paper, data]

Genomic profiles of IDH-mutant gliomas: MYCN-amplified IDH-mutant astrocytoma had the worst prognosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36770] doi:10.1038/s41598-023-33448-w [paper, repository]

An unbiased AAV-STARR-seq screen revealing the enhancer activity map of genomic regions in the mouse brain in vivo.

Journal: Scientific reports

Authors' code: gersteinlab/starrpeaker (GPL-3.0)

Status: code verified, 12 files readable

[36771] doi:10.1038/s41598-023-33869-7 [paper, data]

Neuropathological signatures revealed by transcriptomic and proteomic analysis in Pten-deficient mouse models.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36772] doi:10.1038/s41598-023-33930-5 [paper, repository]

Ensemble machine learning algorithm for predicting acute kidney injury in patients admitted to the neurointensive care unit following brain surgery.

Journal: Scientific reports

Authors' code: fzs1412/Ensemble-Machine-Learning-Algorithm (no license)

Status: empty repository

[36773] doi:10.1073/pnas.2220777120 [paper, data]

Parvalbumin interneuron activity drives fast inhibition-induced vasoconstriction followed by slow substance P-mediated vasodilation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36774] doi:10.1073/pnas.2300291120 [paper, data]

The mechanosensitive ion channel Piezo1 contributes to ultrasound neuromodulation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36775] doi:10.1093/nc/niad006 [paper, data]

Nonlinear brain correlates of trait self-boundarylessness.

Journal: Neuroscience of consciousness

Status: data only, 1 dataset cited

[36776] doi:10.1093/pnasnexus/pgad144 [paper, data]

Multiplexed neuropeptide mapping in ant brains integrating microtomography and three-dimensional mass spectrometry imaging.

Journal: PNAS nexus

Status: data only, 2 datasets cited

[36777] doi:10.1101/2023.04.25.538209 [paper, data]

An energy costly architecture of neuromodulators for human brain evolution and cognition

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[36778] doi:10.1111/pcn.13551 [paper, data]

Depression and lifestyle: Focusing on nutrition, exercise, and their possible relevance to molecular mechanisms.

Journal: Psychiatry and clinical neurosciences

Status: data only, 2 datasets cited

[36779] doi:10.1117/1.nph.10.2.025005 [paper]

Preictal neuronal and vascular activity precedes the onset of childhood absence seizure: direct current potential shifts and their correlation with hemodynamic activity.

Journal: Neurophotonics

Status: code on request

[36780] doi:10.1186/s13041-023-01024-y [paper, data]

Tibial fracture surgery in elderly mice caused postoperative neurocognitive disorder via SOX2OT lncRNA in the hippocampus.

Journal: Molecular brain

Status: data only, 1 dataset cited

[36781] doi:10.1186/s13195-023-01233-6 [paper, data]

Spatial navigation is associated with subcortical alterations and progression risk in subjective cognitive decline.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[36782] doi:10.1371/journal.pbio.3001747 [paper, repository]

Boundary vector cells in the goldfish central telencephalon encode spatial information.

Journal: PLoS biology

Authors' code: Zenodo 7684281 (other-open)

Status: code verified, 1 file readable

[36783] doi:10.1371/journal.pbio.3002086 [paper, repository]

Experience-dependent evolution of odor mixture representations in piriform cortex.

Journal: PLoS biology

Authors' code: ABernersLee/TargetPaper_20220822 (no license)

Status: code verified, 40 files readable, 7 matches

[36784] doi:10.1371/journal.pone.0284610 [paper, data]

Quantum spin models for numerosity perception.

Journal: PloS one

Status: data only, 1 dataset cited

[36785] doi:10.1523/jneurosci.1467-22.2023 [paper, repository]

Learning a Model of Shape Selectivity in V4 Cells Reveals Shape Encoding Mechanisms in the Brain.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF u3zka (no license)

Status: code verified, 44 files readable, 7 matches

[36786] doi:10.1523/jneurosci.1527-22.2023 [paper, data]

Anticipation of Appetitive Operant Action Induces Sustained Dopamine Release in the Nucleus Accumbens.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request, 1 dataset cited

[36787] doi:10.1523/jneurosci.2002-22.2023 [paper, repository]

Human-Like Modulation Sensitivity Emerging through Optimization to Natural Sound Recognition.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: cycentum/Human-like-Modulation-Sensitivity-through-Natural-Sound-Recognition (other)

Status: code verified, 27 files readable, 6 matches

[36788] doi:10.3390/biology12050648 [paper, repository]

Identification of Prominent Genes between 3D Glioblastoma Models and Clinical Samples via GEO/TCGA/CGGA Data Analysis.

Journal: Biology

Authors' code: thegellerbing/2D_3D_Analysis- (no license)

Status: code verified, 5 files readable, 4 matches

[36789] doi:10.3390/genes14050972 [paper, data]

Expanding the Knowledge of KIF1A-Dependent Disorders to a Group of Polish Patients.

Journal: Genes

Status: data only, 1 dataset cited

[36790] doi:10.7554/elife.83876 [paper, repository]

Poor air quality is associated with impaired visual cognition in the first two years of life: A longitudinal investigation.

Journal: eLife

Authors' code: OSF fspzb (no license)

Status: code verified, 1 file readable, 3 matches

Monday, 24 April 2023 (35 papers)

[36791] doi:10.1007/s00359-023-01633-x [paper, data]

The influence of stimulus history on directional coding in the monarch butterfly brain.

Journal: Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology

Status: data only, 1 dataset cited

[36792] doi:10.1007/s00429-023-02641-y [paper, data]

Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis.

Journal: Brain structure & function

Status: data only, 2 datasets cited

[36793] doi:10.1016/j.bbi.2023.04.008 [paper, data]

Conserved and cell type-specific transcriptional responses to IFN-γ in the ventral midbrain.

Journal: Brain, behavior, and immunity

Status: data only, 2 datasets cited

[36794] doi:10.1016/j.crmeth.2023.100453 [paper, repository]

Large-scale interrogation of retinal cell functions by 1-photon light-sheet microscopy.

Journal: Cell reports methods

Authors' code: Zenodo 7747113 (CC-BY-4.0)

Status: code verified

[36795] doi:10.1016/j.crmeth.2023.100462 [paper, repository]

Effective and efficient neural networks for spike inference from <i>in vivo</i> calcium imaging.

Journal: Cell reports methods

Authors' code: tinlab/ens2 (GPL-3.0), Zenodo 7787553 (other-open), HelmchenLabSoftware/Cascade (GPL-3.0), Zenodo 5477429 (apgl-v3), MLspike (no license), j-friedrich/OASIS (GPL-3.0)

Status: code verified, 44 files readable, 15 matches

[36796] doi:10.1016/j.isci.2023.106687 [paper]

A novel IRE1 kinase inhibitor for adjuvant glioblastoma treatment.

Journal: iScience

Status: code on request

[36797] doi:10.1016/j.isci.2023.106722 [paper, repository]

Mechanosensory signal transmission in the arms and the nerve ring, an interarm connective, of <i>Octopus bimaculoides</i>.

Journal: iScience

Authors' code: ramintoosi/ROSS (no license)

Status: code verified, 63 files readable

[36798] doi:10.1038/s41467-023-37797-y [paper, repository]

Parasubthalamic calretinin neurons modulate wakefulness associated with exploration in male mice.

Journal: Nature communications

Authors' code: figshare 22122179 (CC-BY-4.0)

Status: code verified, 1 file readable

[36799] doi:10.1038/s41467-023-37844-8 [paper, repository]

Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex.

Journal: Nature communications

Authors' code: circstat/pycircstat (MIT), yinawei/Mouse_V1_EAP_Analysis (BSD-2-Clause), yinawei/Mouse-all-active-models-EAP (BSD-2-Clause)

Status: code verified, 81 files readable, 8 matches

[36800] doi:10.1038/s41591-023-02317-4 [paper, repository]

A shared neural basis underlying psychiatric comorbidity.

Journal: Nature medicine

Authors' code: xic199wzr/NP-factor (no license)

Status: code verified, 23 files readable, 3 matches

[36801] doi:10.1038/s41593-023-01307-6 [paper, repository]

Computational complexity drives sustained deliberation.

Journal: Nature neuroscience

Authors' code: OSF 3d26g (no license)

Status: code found, still to be checked

[36802] doi:10.1038/s41593-023-01308-5 [paper, repository]

Neural dynamics and architecture of the heading direction circuit in zebrafish.

Journal: Nature neuroscience

Authors' code: Zenodo 7715409 (other-open), Zenodo 5932227 (other-open), Zenodo 4122063 (other-open), Zenodo 5931684 (other-open), portugueslab/brunoise (GPL-3.0), portugueslab/bouter (GPL-3.0), portugueslab/sashimi (GPL-3.0), portugueslab/lotr (GPL-3.0)

Status: code verified, 389 files readable, 14 matches

[36803] doi:10.1038/s41593-023-01312-9 [paper, repository]

Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin.

Journal: Nature neuroscience

Authors' code: almaan/axis-projection (MIT), Moldia/iss_starfish (MIT), acycliq/pciSeq (MIT), czarnewski/human_developing_spinal_cord (no license)

Status: code verified, 176 files readable, 12 matches

[36804] doi:10.1038/s41598-023-33687-x [paper, repository]

Exploring microstructure and petrophysical properties of microporous volcanic rocks through 3D multiscale and super-resolution imaging.

Journal: Scientific reports

Authors' code: figshare 20449188 (CC-BY-4.0)

Status: code verified

[36805] doi:10.1038/s41598-023-33781-0 [paper, data]

A ready-to-use machine learning tool for symmetric multi-modality registration of brain MRI.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36806] doi:10.1038/s41598-023-33823-7 [paper, data]

Short-term ocular dominance plasticity is not modulated by visual cortex tDCS but increases with length of monocular deprivation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36807] doi:10.1038/s42003-023-04843-w [paper, data]

Multivariate information theory uncovers synergistic subsystems of the human cerebral cortex.

Journal: Communications biology

Status: data only, 1 dataset cited

[36808] doi:10.1073/pnas.2213438120 [paper, repository]

The temporal structure of REM sleep shows minute-scale fluctuations across brain and body in mice and humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: brendonw1/watsonlabcode (no license)

Status: code verified, 2,000 files readable, 23 matches

[36809] doi:10.1073/pnas.2218197120 [paper, repository]

Full Bayesian identification of linear dynamic systems using stable kernels.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: dei.unipd.it/~giapi (no license)

Status: code verified

[36810] doi:10.1073/pnas.2221175120 [paper, data]

Targeting SWI/SNF ATPases in H3.3K27M diffuse intrinsic pontine gliomas.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36811] doi:10.1093/braincomms/fcad137 [paper, repository]

The role of hand preference in cognition and neuropsychiatric symptoms in neurodegenerative diseases.

Journal: Brain communications

Authors' code: OSF 38qj6 (no license)

Status: code verified, 1 file readable, 1 match

[36812] doi:10.1101/2023.04.24.538054 [paper, data]

Learning shapes neural geometry in the prefrontal cortex

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[36813] doi:10.1159/000530805 [paper, data]

Changes in Visual Long-Term Potentiation Show Preserved Cyclicity in Human Females Taking Combined Oral Contraceptives.

Journal: Neuroendocrinology

Status: data only, 5 datasets cited

[36814] doi:10.1172/jci.insight.164178 [paper, data]

MKRN3 inhibits puberty onset via interaction with IGF2BP1 and regulation of hypothalamic plasticity.

Journal: JCI insight

Status: data only, 1 dataset cited

[36815] doi:10.1186/s12944-023-01817-z [paper, data]

HDL and LDL have distinct, opposing effects on LPS-induced brain inflammation.

Journal: Lipids in health and disease

Status: data only, 1 dataset cited

[36816] doi:10.1186/s40168-023-01506-0 [paper, data]

Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the "Lunar Palace 365" experiment.

Journal: Microbiome

Status: data only, 8 datasets cited

[36817] doi:10.1212/nxg.0000000000200066 [paper, repository]

Identifying Aging and Alzheimer Disease-Associated Somatic Variations in Excitatory Neurons From the Human Frontal Cortex.

Journal: Neurology. Genetics

Authors' code: mzhang0215/ENSM_project (no license)

Status: code verified, 3 files readable

[36818] doi:10.1242/dev.201644 [paper, data]

Pten inhibition dedifferentiates long-distance axon-regenerating intrinsically photosensitive retinal ganglion cells and upregulates mitochondria-associated Dynlt1a and Lars2.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[36819] doi:10.1371/journal.pcbi.1011022 [paper, repository]

MultiCens: Multilayer network centrality measures to uncover molecular mediators of tissue-tissue communication.

Journal: PLoS computational biology

Authors' code: BIRDSgroup/MultiCens (LGPL-2.1)

Status: code verified, 5 files readable, 3 matches

[36820] doi:10.1371/journal.pcbi.1011037 [paper, repository]

Efficient coding of natural scenes improves neural system identification.

Journal: PLoS computational biology

Authors' code: eulerlab/hybrid-model (MIT)

Status: code verified, 26 files readable, 13 matches

[36821] doi:10.2147/nss.s400944 [paper, repository]

Exploratory Validation of Sleep-Tracking Devices in Patients with Psychiatric Disorders.

Journal: Nature and science of sleep

Authors' code: SRI-human-sleep/sleep-trackers-performance (GPL-3.0)

Status: code verified, 10 files readable, 4 matches

[36822] doi:10.3390/brainsci13050711 [paper, data]

A Convenient All-Cell Optical Imaging Method Compatible with Serial SEM for Brain Mapping.

Journal: Brain sciences

Status: data only, 1 dataset cited

[36823] doi:10.3390/cells12091228 [paper]

Integrated Omic Analysis Delineates Pathways Modulating Toxic TDP-43 Protein Aggregates in Amyotrophic Lateral Sclerosis.

Journal: Cells

Status: data only

[36824] doi:10.7554/elife.86273 [paper, data]

Bidirectional regulation of postmitotic H3K27me3 distributions underlie cerebellar granule neuron maturation dynamics.

Journal: eLife

Status: data only, 2 datasets cited

[36825] doi:10.7717/peerj.15231 [paper, data]

Sex differences in gene expression and alternative splicing in the Chinese horseshoe bat.

Journal: PeerJ

Status: data only, 1 dataset cited

Sunday, 23 April 2023 (4 papers)

[36826] doi:10.1002/advs.202207732 [paper]

Large-Area Field Potential Imaging Having Single Neuron Resolution Using 236 880 Electrodes CMOS-MEA Technology.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[36827] doi:10.1016/j.heliyon.2023.e15754 [paper, data]

Association between vitamin D deficiency and multiple sclerosis- MRI significance: A scoping review.

Journal: Heliyon

Status: data only, 1 dataset cited

[36828] doi:10.1016/j.isci.2023.106707 [paper]

Oxytocin excites dorsal raphe serotonin neurons and bidirectionally gates their glutamate synapses.

Journal: iScience

Status: code on request

[36829] doi:10.1016/j.neuroimage.2023.120115 [paper, repository]

Relationship between prediction accuracy and feature importance reliability: An empirical and theoretical study.

Journal: NeuroImage

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 3 matches

Saturday, 22 April 2023 (3 papers)

[36830] doi:10.1002/hbm.26318 [paper]

Threat-induced anxiety and selfishness in resource sharing: Behavioral and neural evidence.

Journal: Human brain mapping

Status: code on request

[36831] doi:10.3390/genes14050953 [paper, data]

Neuroprotective Peptides and New Strategies for Ischemic Stroke Drug Discoveries.

Journal: Genes

Status: data only, 5 datasets cited

[36832] doi:10.3390/genes14050957 [paper, data]

Embryonic Stem Cell-Derived Neurons as a Model System for Epigenome Maturation during Development.

Journal: Genes

Status: data only, 1 dataset cited

Friday, 21 April 2023 (37 papers)

[36833] doi:10.1002/cam4.5963 [paper, data]

Emotion regulation and choice of bilateral mastectomy for the treatment of unilateral breast cancer.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[36834] doi:10.1007/s00018-023-04775-y [paper, data]

Aging microglia.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 4 datasets cited

[36835] doi:10.1016/j.ebiom.2023.104565 [paper, repository]

A clinically relevant selective ERK-pathway inhibitor reverses core deficits in a mouse model of autism.

Journal: EBioMedicine

Authors' code: DrCoffey/DeepSqueak (BSD-3-Clause)

Status: code verified, 87 files readable, 2 matches

[36836] doi:10.1016/j.isci.2023.106703 [paper, repository]

Anatomical organization of temporally correlated neural calcium activity in the hippocampal CA1 region.

Journal: iScience

Authors' code: xiangmixLab/Anatomical-organization-of-temporally-correlated-hippocampal-CA1-neurons (no license), YijunBao/TUnCaT (GPL-2.0), tortlab/Cell-Assembly-Detection (no license)

Status: code verified, 159 files readable, 8 matches

[36837] doi:10.1016/j.neubiorev.2023.105193 [paper, repository]

From neurotransmitters to networks: Transcending organisational hierarchies with molecular-informed functional imaging.

Journal: Neuroscience and biobehavioral reviews

Authors' code: Zenodo 5138031 (other-open)

Status: code verified, 5 files readable

[36838] doi:10.1016/j.xpro.2023.102246 [paper, repository]

Protocol for quantitative characterization of human retinotopic maps using quasiconformal mapping.

Journal: STAR protocols

Authors' code: negarjm/beltrami-coefficient-map (no license), OSF 5hvg6 (no license), Zenodo 7742306 (other-open)

Status: code verified, 638 files readable, 2 matches

[36839] doi:10.1038/s41380-023-02065-4 [paper, data]

Insulin effects on core neurotransmitter pathways involved in schizophrenia neurobiology: a meta-analysis of preclinical studies. Implications for the treatment.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[36840] doi:10.1038/s41467-023-37437-5 [paper, repository]

Single-nucleus RNA-sequencing of autosomal dominant Alzheimer disease and risk variant carriers.

Journal: Nature communications

Authors' code: HarariLab/parietal-snRNAseq (no license), Zenodo 7630313 (other-open)

Status: code verified, 168 files readable, 30 matches

[36841] doi:10.1038/s41467-023-37584-9 [paper, repository]

Environmental context-dependent activation of dopamine neurons via putative amygdala-nigra pathway in macaques.

Journal: Nature communications

Authors' code: figshare 19105136 (CC-BY-4.0)

Status: code verified

[36842] doi:10.1038/s41467-023-37982-z [paper, repository]

Unsupervised approach to decomposing neural tuning variability.

Journal: Nature communications

Authors' code: rong-zhu/PfPCA (no license)

Status: code verified, 4 files readable, 2 matches

[36843] doi:10.1038/s41467-023-38025-3 [paper]

Error-related signaling in nucleus accumbens D2 receptor-expressing neurons guides inhibition-based choice behavior in mice.

Journal: Nature communications

Status: code on request

[36844] doi:10.1038/s41467-023-38026-2 [paper, data]

Control of a hippocampal recurrent excitatory circuit by cannabinoid receptor-interacting protein Gap43.

Journal: Nature communications

Status: data only, 3 datasets cited

[36845] doi:10.1038/s41467-023-38044-0 [paper, repository]

3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma.

Journal: Nature communications

Authors' code: kokonech/EPN_HiC_analysis (no license)

Status: code verified, 24 files readable, 10 matches

[36846] doi:10.1038/s41467-023-38046-y [paper, data]

Cross-stage neural pattern similarity in the hippocampus predicts false memory derived from post-event inaccurate information.

Journal: Nature communications

Status: data only, 1 dataset cited

[36847] doi:10.1038/s41598-023-31932-x [paper, repository]

Putting hornets on the genomic map.

Journal: Scientific reports

Authors' code: emelinefavreau/vespa-genomes-analyses (no license)

Status: code verified, 38 files readable, 11 matches

[36848] doi:10.1038/s41598-023-32410-0 [paper, repository]

Dendrites help mitigate the plasticity-stability dilemma.

Journal: Scientific reports

Authors' code: k47h4/Dendrites (no license)

Status: code verified, 10 files readable, 8 matches

[36849] doi:10.1038/s41598-023-33608-y [paper, data]

Cortical glia in SOD1(G93A) mice are subtly affected by ALS-like pathology.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36850] doi:10.1038/s41598-023-33618-w [paper]

Feasibility of in vivo multi-parametric quantitative magnetic resonance imaging of the healthy sciatic nerve with a unified signal readout protocol.

Journal: Scientific reports

Status: code on request

[36851] doi:10.1126/sciadv.abq7105 [paper, data]

Tau pathology epigenetically remodels the neuron-glial cross-talk in Alzheimer's disease.

Journal: Science advances

Status: data only, 1 dataset cited

[36852] doi:10.1126/sciadv.adg3289 [paper, repository]

Neuromorphic learning, working memory, and metaplasticity in nanowire networks.

Journal: Science advances

Authors' code: aloe8475/PhysicalReinforcementLearning (no license)

Status: code verified, 39 files readable, 2 matches

[36853] doi:10.1126/sciadv.adg3918 [paper, repository]

Miniscope-LFOV: A large-field-of-view, single-cell-resolution, miniature microscope for wired and wire-free imaging of neural dynamics in freely behaving animals.

Journal: Science advances

Authors' code: Aharoni-Lab/Miniscope-DAQ-Cypress-firmware (no license), Aharoni-Lab/Miniscope-DAQ-QT-Software (GPL-3.0)

Status: code verified, 83 files readable, 7 matches

[36854] doi:10.1177/09727531231161911 [paper, data]

GABA Administration Ameliorates the Toxicity of Doxorubicin on CSF and the Brain of Albino Rats.

Journal: Annals of neurosciences

Status: data only, 1 dataset cited

[36855] doi:10.1186/s12967-023-04129-z [paper, repository]

Size matters: the impact of nucleus size on results from spatial transcriptomics.

Journal: Journal of translational medicine

Authors' code: jakubmie/ST_snRNA-seq (no license)

Status: empty repository, 1 file readable

[36856] doi:10.1186/s13293-023-00502-1 [paper, repository]

Lipidomic landscape of circulating extracellular vesicles isolated from adolescents exposed to ethanol intoxication: a sex difference study.

Journal: Biology of sex differences

Authors' code: Zenodo 6581012 (CC-BY-4.0), bioinfo.cipf.es/sal (no license)

Status: code verified

[36857] doi:10.1371/journal.pbio.3002096 [paper, data]

Monocular deprivation during the critical period alters neuronal tuning and the composition of visual circuitry.

Journal: PLoS biology

Status: data only, 1 dataset cited

[36858] doi:10.1371/journal.pcbi.1011043 [paper, repository]

The functional logic of odor information processing in the Drosophila antennal lobe.

Journal: PLoS computational biology

Authors' code: TK-21st/AntennalLobeLLY22 (BSD-3-Clause)

Status: code verified, 6 files readable, 2 matches

[36859] doi:10.1523/eneuro.0511-22.2023 [paper, data]

Ontogeny and Trophic Factor Sensitivity of Gastrointestinal Projecting Vagal Sensory Cell Types.

Journal: eNeuro

Status: data only, 1 dataset cited

[36860] doi:10.1523/jneurosci.1451-22.2023 [paper, data]

Perceptual History Biases Are Predicted by Early Visual-Evoked Activity.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[36861] doi:10.2196/40755 [paper, repository]

Patient Embeddings From Diagnosis Codes for Health Care Prediction Tasks: Pat2Vec Machine Learning Framework.

Journal: JMIR AI

Authors' code: huggingface.co/zidatasciencelab/pat2vec (CC-BY-4.0)

Status: empty repository, 1 file readable

[36862] doi:10.3389/fninf.2023.1113988 [paper, repository]

Application of a Hermite-based measure of non-Gaussianity to normality tests and independent component analysis.

Journal: Frontiers in neuroinformatics

Authors' code: jvlab/hf-mong (no license)

Status: code verified, 91 files readable, 6 matches

[36863] doi:10.3389/fnins.2023.1127537 [paper, repository]

Boost event-driven tactile learning with location spiking neurons.

Journal: Frontiers in neuroscience

Authors' code: pkang2017/TactileLSN (MIT), bamsumit/slayerPytorch (GPL-3.0)

Status: code verified, 74 files readable, 7 matches

[36864] doi:10.3390/brainsci13040698 [paper, repository]

Betting on Non-Invasive Brain Stimulation to Treat Gambling Disorder: A Systematic Review and Meta-Analysis.

Journal: Brain sciences

Authors' code: OSF ufd93 (no license), neurolabusc/surf-ice (BSD-2-Clause)

Status: code verified, 45 files readable

[36865] doi:10.3390/brainsci13040700 [paper, repository]

Neurophysiological and Clinical Effects of Upper Limb Robot-Assisted Rehabilitation on Motor Recovery in Patients with Subacute Stroke: A Multicenter Randomized Controlled Trial Study Protocol.

Journal: Brain sciences

Authors' code: clinicalregistration.gov (no license)

Status: code found, still to be checked

[36866] doi:10.3390/s23084164 [paper, repository]

Motor Imagery Multi-Tasks Classification for BCIs Using the NVIDIA Jetson TX2 Board and the EEGNet Network.

Journal: Sensors (Basel, Switzerland)

Authors' code: Tatyvelu/Motor-Imagery-Multi-Tasks-Classification-for-BCIs-Using-the-Jetson-TX2-board-and-a-Modified-EEGNet-A (no license)

Status: dead link

[36867] doi:10.7554/elife.80168 [paper, repository]

High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly.

Journal: eLife

Authors' code: mberryer/ALPAQAS (MIT)

Status: empty repository, 2 files readable

[36868] doi:10.7554/elife.81511 [paper, repository]

A task-general connectivity model reveals variation in convergence of cortical inputs to functional regions of the cerebellum.

Journal: eLife

Authors' code: diedrichsenlab/fs_lr_32 (no license), nipype.readthedocs.io (no license), maedbhk/cerebellum_connectivity (MIT)

Status: code verified, 67 files readable, 6 matches

[36869] doi:10.7554/elife.83232 [paper, repository]

TMS-evoked responses are driven by recurrent large-scale network dynamics.

Journal: eLife

Authors' code: GriffithsLab/PyTepFit (MIT)

Status: code verified, 10 files readable, 10 matches

Thursday, 20 April 2023 (34 papers)

[36870] doi:10.1007/s10803-023-05980-1 [paper, repository]

An Investigation of Age-related Neuropathophysiology in Autism Spectrum Disorder Using Fixel-based Analysis of Corpus Callosum White Matter Micro- and Macrostructure.

Journal: Journal of autism and developmental disorders

Authors' code: MervSingh/ABIDE-II_FBA (no license)

Status: code verified, 2 files readable

[36871] doi:10.1016/j.devcel.2023.03.021 [paper]

Diet suppresses glioblastoma initiation in mice by maintaining quiescence of mutation-bearing neural stem cells.

Journal: Developmental cell

Status: code on request

[36872] doi:10.1016/j.isci.2023.106627 [paper]

Oral and fecal microbiota perturbance in cocaine users: Can rTMS-induced cocaine abstinence support eubiosis restoration?

Journal: iScience

Status: code on request

[36873] doi:10.1016/j.isci.2023.106705 [paper]

Low-temperature resin embedding of the whole brain for various precise structures dissection.

Journal: iScience

Status: code on request

[36874] doi:10.1016/j.isci.2023.106706 [paper]

Interhemispheric multisensory perception and Bayesian causal inference.

Journal: iScience

Status: code on request

[36875] doi:10.1016/j.stemcr.2023.03.012 [paper]

Neuro-mesodermal assembloids recapitulate aspects of peripheral nervous system development in vitro.

Journal: Stem cell reports

Status: code on request

[36876] doi:10.1016/j.stemcr.2023.03.016 [paper, repository]

Human iPSC-derived neural progenitor cells secreting GDNF provide protection in rodent models of ALS and retinal degeneration.

Journal: Stem cell reports

Authors' code: shaughnmb/2022_laperle_et_al (GPL-3.0)

Status: code verified, 3 files readable

[36877] doi:10.1038/s41467-023-37574-x [paper, repository]

Evolution of cortical geometry and its link to function, behaviour and ecology.

Journal: Nature communications

Authors' code: Zenodo 7713847 (other-open)

Status: code verified

[36878] doi:10.1038/s41467-023-37630-6 [paper, repository]

Integrated transcriptome landscape of ALS identifies genome instability linked to TDP-43 pathology.

Journal: Nature communications

Authors' code: ojziff/als_genome_instability (no license)

Status: code verified, 12 files readable, 40 matches

[36879] doi:10.1038/s41467-023-37736-x [paper, data]

Hippocampal sharp wave ripples underlie stress susceptibility in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[36880] doi:10.1038/s41467-023-37872-4 [paper, data]

CAR-neutrophil mediated delivery of tumor-microenvironment responsive nanodrugs for glioblastoma chemo-immunotherapy.

Journal: Nature communications

Status: data only, 1 dataset cited

[36881] doi:10.1038/s41531-023-00488-y [paper, data]

Multi-regional alterations in glucose and purine metabolic pathways in the Parkinson's disease dementia brain.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[36882] doi:10.1038/s41597-023-02126-x [paper, repository]

A new open, high-resolution, multishell, diffusion-weighted imaging dataset of the living squirrel monkey.

Journal: Scientific data

Authors' code: Orset-Thomas/Squirrel_monkey_DWI (no license), doi:10.6084/m9.figshare.c.6329417.v1 (no license)

Status: code verified, 4 files readable

[36883] doi:10.1038/s41598-023-32618-0 [paper, repository]

Modeling the relationship between neuronal activity and the BOLD signal: contributions from astrocyte calcium dynamics.

Journal: Scientific reports

Authors' code: Zenodo 7801673 (CC-BY-4.0)

Status: code verified, 28 files readable, 2 matches

[36884] doi:10.1038/s41598-023-33384-9 [paper, data]

Encoding of speech in convolutional layers and the brain stem based on language experience.

Journal: Scientific reports

Status: data only, 2 datasets cited

[36885] doi:10.1038/s43018-023-00547-6 [paper, data]

CD103⁺ regulatory T cells underlie resistance to radio-immunotherapy and impair CD8⁺ T cell activation in glioblastoma.

Journal: Nature cancer

Status: code on request, 2 datasets cited

[36886] doi:10.1085/jgp.202313340 [paper, data]

Allosteric modulation of GluN1/GluN3 NMDA receptors by GluN1-selective competitive antagonists.

Journal: The Journal of general physiology

Status: code on request, 8 datasets cited

[36887] doi:10.1093/psyrad/kkad005 [paper]

A brain structural connectivity biomarker for autism spectrum disorder diagnosis in early childhood.

Journal: Psychoradiology

Status: code on request

[36888] doi:10.1186/s13195-023-01225-6 [paper, repository]

Higher performance for women than men in MRI-based Alzheimer's disease detection.

Journal: Alzheimer's research & therapy

Authors' code: malteklingenberg/AD-sex-bias (no license)

Status: code verified, 22 files readable, 6 matches

[36889] doi:10.1371/journal.pbio.3002058 [paper, repository]

A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases.

Journal: PLoS biology

Authors' code: Zenodo 7709525 (CC-BY-4.0), yasharz/human-brain-disease-transcriptomics (no license), NathanSkene/EWCE (no license), supp:PMC10118126/pbio.3002058.s009.zip (no license)

Status: code verified, 133 files readable, 1 match

[36890] doi:10.1371/journal.pbio.3002078 [paper, data]

DSCAM gene triplication causes excessive GABAergic synapses in the neocortex in Down syndrome mouse models.

Journal: PLoS biology

Status: data only, 1 dataset cited

[36891] doi:10.1371/journal.pone.0280566 [paper, repository]

Getting the brain into gear: An online study investigating cognitive reserve and word-finding abilities in healthy ageing.

Journal: PloS one

Authors' code: EliseJis/GBG-Online-Study (no license)

Status: code verified, 11 files readable, 12 matches

[36892] doi:10.1371/journal.pone.0284617 [paper, data]

Hepcidin expression in the trigeminal ganglion and the oral mucosa in an oral ulcerative mucositis rat model.

Journal: PloS one

Status: data only, 1 dataset cited

[36893] doi:10.1371/journal.pone.0284735 [paper, repository]

A novel task to investigate vibrotactile detection in mice.

Journal: PloS one

Authors' code: csnlab/olcese-lab/vibrotactile_detection_in_mice (no license)

Status: code verified, 11 files readable, 1 match

[36894] doi:10.1523/eneuro.0406-22.2023 [paper, repository]

Glutamatergic and GABAergic Receptor Modulation Present Unique Electrophysiological Fingerprints in a Concentration-Dependent and Region-Specific Manner.

Journal: eNeuro

Authors' code: SystemNeuroCIMA/eNeuroGonzalezBurgos (MIT)

Status: code verified, 5 files readable, 1 match

[36895] doi:10.3389/fimmu.2023.1174008 [paper, data]

Combination of single-nucleus and bulk RNA-seq reveals the molecular mechanism of thalamus haemorrhage-induced central poststroke pain.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[36896] doi:10.3389/fnana.2023.1131167 [paper, data]

Projections of the insular cortex to orbitofrontal and medial prefrontal cortex: A tracing study in the rat.

Journal: Frontiers in neuroanatomy

Status: data only, 1 dataset cited

[36897] doi:10.3389/fneur.2023.1107538 [paper, repository]

The rearrangement of actin cytoskeleton in mossy fiber synapses in a model of experimental febrile seizures.

Journal: Frontiers in neurology

Authors' code: pan.baidu.com/s/18v87fgf79f8a-8g1crngwg (no license)

Status: code verified

[36898] doi:10.3389/fnhum.2023.1150120 [paper, data]

Pre-trained deep learning models for brain MRI image classification.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[36899] doi:10.3389/fnins.2023.1146644 [paper, repository]

Microstructural and functional impairment of the basal ganglia in Wilson's disease: a multimodal neuroimaging study.

Journal: Frontiers in neuroscience

Authors' code: acostaj/QSMbox (BSD-3-Clause)

Status: code verified, 184 files readable, 2 matches

[36900] doi:10.3389/fnins.2023.1158246 [paper, repository]

STDP-based adaptive graph convolutional networks for automatic sleep staging.

Journal: Frontiers in neuroscience

Authors' code: thegoist/STDP-GCN (MPL-2.0)

Status: code verified, 24 files readable

[36901] doi:10.3390/biology12040627 [paper, repository]

Whole-Transcriptome Analysis of Repeated Low-Level Sarin-Exposed Rat Hippocampus and Identification of Cerna Networks to Investigate the Mechanism of Sarin-Induced Cognitive Impairment.

Journal: Biology

Authors' code: tanghaibao/Goatools (BSD-2-Clause)

Status: code verified, 136 files readable, 2 matches

[36902] doi:10.3390/brainsci13040692 [paper, data]

Increased Functional Connectivity Involving the Parahippocampal Gyrus in Patients with Schizophrenia during Theory of Mind Processing: A Psychophysiological Interaction Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

[36903] doi:10.3758/s13415-023-01096-2 [paper, repository]

Testing locus coeruleus-norepinephrine accounts of working memory, attention control, and fluid intelligence.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF w8cyg (no license)

Status: code verified, 2 files readable, 8 matches

Wednesday, 19 April 2023 (28 papers)

[36904] doi:10.1016/j.isci.2023.106684 [paper]

Creatine kinase brain-type regulates BCAR1 phosphorylation to facilitate DNA damage repair.

Journal: iScience

Status: code on request

[36905] doi:10.1016/j.isci.2023.106698 [paper]

Cytotoxic CNS-associated T cells drive axon degeneration by targeting perturbed oligodendrocytes in <i>PLP1</i> mutant mice.

Journal: iScience

Status: code on request

[36906] doi:10.1016/j.nicl.2023.103407 [paper, repository]

Degradation of EEG microstates patterns in subjective cognitive decline and mild cognitive impairment: Early biomarkers along the Alzheimer's Disease continuum?

Journal: NeuroImage. Clinical

Authors' code: mikelassi/PREVIEW (no license)

Status: code verified, 11 files readable, 11 matches

[36907] doi:10.1016/j.xcrm.2023.101020 [paper]

Dynamics of AMPA receptors regulate epileptogenesis in patients with epilepsy.

Journal: Cell reports. Medicine

Status: code on request

[36908] doi:10.1038/s41467-023-37980-1 [paper, repository]

Complex computation from developmental priors.

Journal: Nature communications

Authors' code: Zenodo 7689897 (other-open), bdanubius/diffconnect (no license)

Status: code verified, 44 files readable, 2 matches

[36909] doi:10.1038/s41586-023-05964-2 [paper, repository]

A somato-cognitive action network alternates with effector regions in motor cortex.

Journal: Nature

Authors' code: DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause), DCAN-Labs/nhp-abcd-bids-pipeline (BSD-3-Clause), DosenbachGreene (no license), cjl2007/Liston-Laboratory-MultiEchofMRI-Pipeline (no license), DosenbachGreene/SCAN (no license)

Status: code verified, 49 files readable, 11 matches

[36910] doi:10.1038/s41598-023-33289-7 [paper, repository]

Automatic brain extraction and brain tissues segmentation on multi-contrast animal MRI.

Journal: Scientific reports

Authors' code: sites.google.com/site/chuanglab (no license)

Status: code verified

[36911] doi:10.1038/s41598-023-33622-0 [paper, repository]

Loss of neuron network coherence induced by virus-infected astrocytes: a model study.

Journal: Scientific reports

Authors' code: sstasenko (no license)

Status: code verified

[36912] doi:10.1038/s42003-023-04787-1 [paper]

A framework for focal and connectomic mapping of transiently disrupted brain function.

Journal: Communications biology

Status: code on request

[36913] doi:10.1093/braincomms/fcad130 [paper, repository]

Spatial characterization of tangle-bearing neurons and ghost tangles in the human inferior temporal gyrus with three-dimensional imaging.

Journal: Brain communications

Authors' code: tjzwang/GhostTangles (MIT)

Status: code verified, 13 files readable

[36914] doi:10.1097/txd.0000000000001474 [paper, repository]

Cost-effectiveness of Interventions to Increase Utilization of Kidneys From Deceased Donors With Primary Brain Malignancy in an Australian Setting.

Journal: Transplantation direct

Authors' code: james-hedley/PBM_economic_evaluation (GPL-3.0)

Status: code verified, 6 files readable, 6 matches

[36915] doi:10.1098/rsob.220308 [paper, repository]

High-resolution analysis of individual <i>Drosophila melanogaster</i> larvae uncovers individual variability in locomotion and its neurogenetic modulation.

Journal: Open biology

Authors' code: mthane/IMBA (no license), doi:10.12751/g-node.5e1ifd (no license), doi:10.6084/m9.figshare.c.6476240 (no license)

Status: code verified, 116 files readable, 5 matches

[36916] doi:10.1098/rsos.221091 [paper, repository]

Re-evaluating frontopolar and temporoparietal contributions to detection and discrimination confidence.

Journal: Royal Society open science

Authors' code: matanmazor/unequalVarianceDiscrimination (MIT), metacoglab/MetaLabCore (no license), Zenodo 7351965 (other-open), doi:10.6084/m9.figshare.c.6605118 (no license)

Status: code verified, 139 files readable, 12 matches

[36917] doi:10.1098/rsos.230036 [paper, repository]

Ready to detect a reversal of time's arrow: a psychophysical study using short video clips in daily scenes.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6574923 (no license)

Status: code found, still to be checked

[36918] doi:10.1098/rsos.230321 [paper, repository]

Causal evidence for the role of the sensory visual cortex in visual short-term memory maintenance.

Journal: Royal Society open science

Authors' code: OSF empdt (no license), OSF d9bqk (no license), doi:10.6084/m9.figshare.c.6534049 (no license)

Status: code verified, 1 file readable

[36919] doi:10.1111/cns.14210 [paper, data]

Cortical dopamine D5 receptors regulate neuronal circuit oscillatory activity and memory in rats.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[36920] doi:10.1126/sciadv.add7572 [paper, repository]

Local brain oscillations and interregional connectivity differentially serve sensory and expectation effects on pain.

Journal: Science advances

Authors' code: OSF jw8rv (no license), OSF geanc (no license)

Status: code verified, 78 files readable, 18 matches

[36921] doi:10.1126/sciadv.adg6618 [paper, repository]

Primate-conserved carbonic anhydrase IV and murine-restricted LY6C1 enable blood-brain barrier crossing by engineered viral vectors.

Journal: Science advances

Authors' code: GradinaruLab/in-vitro-transduction-assay (GPL-3.0), GradinaruLab/APPRAISE (Apache-2.0), Zenodo 7697435 (other-open), GradinaruLab/mCREATE (BSD-3-Clause), GradinaruLab/aavomics (no license)

Status: code verified, 208 files readable, 10 matches

[36922] doi:10.1186/s12864-023-09285-6 [paper, data]

Identifying altered developmental pathways in human globoid cell leukodystrophy iPSCs-derived NSCs using transcriptome profiling.

Journal: BMC genomics

Status: data only, 1 dataset cited

[36923] doi:10.1371/journal.pone.0284514 [paper, data]

Hippocampal 4-Hz oscillations emerge during stationary running in a wheel and are resistant to medial septum inactivation.

Journal: PloS one

Status: data only, 1 dataset cited

[36924] doi:10.1371/journal.pone.0284627 [paper, data]

Changes in cortisol awakening responses (CAR) in menopausal women through short-term marine healing retreat program with specific factors affecting each CAR index.

Journal: PloS one

Status: data only, 1 dataset cited

[36925] doi:10.3389/fgene.2023.1125217 [paper, data]

Examining the immunoepigenetic-gut microbiome axis in the context of self-esteem among Native Hawaiians and other Pacific Islanders.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[36926] doi:10.3389/fimmu.2023.1118808 [paper, data]

Tilianin improves cognition in a vascular dementia rodent model by targeting miR-193b-3p/CaM- and miR-152-3p/CaMKIIα-mediated inflammatory and apoptotic pathways.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[36927] doi:10.3390/biomedicines11041219 [paper, data]

Transcriptional Profiling of a Patient-Matched Cohort of Glioblastoma (IDH-Wildtype) for Therapeutic Target and Repurposing Drug Identification.

Journal: Biomedicines

Status: data only, 1 dataset cited

[36928] doi:10.3390/brainsci13040685 [paper, repository]

Emotion Recognition from Spatio-Temporal Representation of EEG Signals via 3D-CNN with Ensemble Learning Techniques.

Journal: Brain sciences

Authors' code: okankop/Efficient-3DCNNs (MIT)

Status: code verified, 45 files readable, 2 matches

[36929] doi:10.3390/ijms24087518 [paper, data]

Epigenetic Gene-Regulatory Loci in Alu Elements Associated with Autism Susceptibility in the Prefrontal Cortex of ASD.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[36930] doi:10.7554/elife.82367 [paper, repository]

Functional cell types in the mouse superior colliculus.

Journal: eLife

Authors' code: yatangli/li-celltypes-2023 (Apache-2.0)

Status: code verified, 6 files readable, 3 matches

[36931] doi:10.7554/elife.83792 [paper, repository]

Dynamic fibronectin assembly and remodeling by leader neural crest cells prevents jamming in collective cell migration.

Journal: eLife

Authors' code: wdmartinson/neural_crest_project (no license)

Status: code verified, 176 files readable, 8 matches

Tuesday, 18 April 2023 (26 papers)

[36932] doi:10.1002/alz.13055 [paper, data]

MicroRNA expression in extracellular vesicles as a novel blood-based biomarker for Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[36933] doi:10.1002/hbm.26289 [paper, data]

Enhancing the network specific individual characteristics in rs-fMRI functional connectivity by dictionary learning.

Journal: Human brain mapping

Status: code on request, 1 dataset cited

[36934] doi:10.1007/s00210-023-02482-w [paper, data]

Development of a 5-HT₇ receptor antibody for the rat: the good, the bad, and the ugly.

Journal: Naunyn-Schmiedeberg's archives of pharmacology

Status: data only, 1 dataset cited

[36935] doi:10.1016/j.celrep.2023.112397 [paper, repository]

Multi-synaptic boutons are a feature of CA1 hippocampal connections in the stratum oriens.

Journal: Cell reports

Authors' code: Zenodo 7685901 (other-open), flevet/PoCA (no license), juliavg/multi_synaptic_boutons (MIT)

Status: code verified, 209 files readable, 6 matches

[36936] doi:10.1016/j.crmeth.2023.100454 [paper, repository]

COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains.

Journal: Cell reports methods

Authors' code: Zenodo 7746971 (other-open), ok37/numorph (no license), ChristophKirst/ClearMap2 (GPL-3.0), yccc12/combine (no license)

Status: code verified, 1,393 files readable, 5 matches

[36937] doi:10.1016/j.crmeth.2023.100455 [paper, repository]

&lt;i&gt;In situ&lt;/i&gt; microwave fixation provides an instantaneous snapshot of the brain metabolome.

Journal: Cell reports methods

Authors' code: metabolomicsworkbench.org/data/drccmetadata.php (no license)

Status: code verified

[36938] doi:10.1016/j.isci.2023.106690 [paper]

Neurogenetic identification of mosquito sensory neurons.

Journal: iScience

Status: code on request

[36939] doi:10.1016/j.isci.2023.106696 [paper]

Dynamics of cell rounding during detachment.

Journal: iScience

Status: code on request

[36940] doi:10.1016/j.isci.2023.106701 [paper, repository]

Using brain cell-type-specific protein interactomes to interpret neurodevelopmental genetic signals in schizophrenia.

Journal: iScience

Authors' code: lagelab/SCZ_PPI (MIT), Zenodo 7814403 (other-open), LieberInstitute/HumanPilot (Artistic-2.0)

Status: code verified, 132 files readable, 29 matches

[36941] doi:10.1016/j.neuroimage.2023.120100 [paper, data]

Similar representation of names and faces in the network for person perception.

Journal: NeuroImage

Status: data only, 1 dataset cited

[36942] doi:10.1016/j.neuroimage.2023.120121 [paper, repository]

Odor-evoked layer-specific fMRI activities in the awake mouse olfactory bulb.

Journal: NeuroImage

Authors' code: neuroimlabpitt/Olfactory-fMRI (no license)

Status: empty repository

[36943] doi:10.1016/j.neuropsychologia.2023.108562 [paper]

Cognitive effort and active inference.

Journal: Neuropsychologia

Status: code on request

[36944] doi:10.1016/j.patter.2023.100730 [paper, repository]

Understanding common human driving semantics for autonomous vehicles.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 7714338 (other-open), gengmaosi/driving-semantics-snn (MIT)

Status: code verified, 14 files readable

[36945] doi:10.1016/j.xpro.2023.102153 [paper]

Optimized protocol for assay for transposase-accessible chromatin by sequencing (ATAC-seq) from Drosophila melanogaster brain tissue.

Journal: STAR protocols

Status: code on request

[36946] doi:10.1021/acschemneuro.3c00062 [paper, repository]

Current Best Practices for Analysis of Dendritic Spine Morphology and Number in Neurodevelopmental Disorder Research.

Journal: ACS chemical neuroscience

Authors' code: libenzheng/dendritic_spine_processing_example (MIT)

Status: code verified, 6 files readable, 3 matches

[36947] doi:10.1038/s41398-023-02417-2 [paper, repository]

Gradients of striatal function in antipsychotic-free first-episode psychosis and schizotypy.

Journal: Translational psychiatry

Authors' code: koenhaak/congrads (Apache-2.0)

Status: code verified, 5 files readable, 2 matches

[36948] doi:10.1093/psyrad/kkad004 [paper]

Regional superficial amygdala resting-state functional connectivity in adults infers childhood maltreatment severity.

Journal: Psychoradiology

Status: code on request

[36949] doi:10.1111/cns.14206 [paper, repository]

Sleep waves in a large-scale corticothalamic model constrained by activities intrinsic to neocortical networks and single thalamic neurons.

Journal: CNS neuroscience & therapeutics

Authors' code: Zenodo 7724411 (other-open), Zenodo 7724443 (other-open), dervinism/thalamocortical1 (no license), dervinism/thalamocortical2 (GPL-3.0)

Status: code verified, 1,879 files readable, 3 matches

[36950] doi:10.1186/s12974-023-02776-z [paper, data]

PARK7/DJ-1 in microglia: implications in Parkinson's disease and relevance as a therapeutic target.

Journal: Journal of neuroinflammation

Status: data only, 4 datasets cited

[36951] doi:10.15252/embj.2022112721 [paper, data]

Dosage sensitivity to Pumilio1 variants in the mouse brain reflects distinct molecular mechanisms.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[36952] doi:10.2147/ndt.s398321 [paper, repository]

Acupuncture Ameliorated Behavioral Abnormalities in the Autism Rat Model via Pathways for Hippocampal Serotonin.

Journal: Neuropsychiatric disease and treatment

Authors' code: tanghaibao/Goatools (BSD-2-Clause)

Status: code verified, 136 files readable, 2 matches

[36953] doi:10.3389/fcell.2023.1165125 [paper]

Reduced levels of NGF shift astrocytes toward a neurotoxic phenotype.

Journal: Frontiers in cell and developmental biology

Status: data only

[36954] doi:10.3389/fnmol.2023.1150399 [paper, data]

GAP-43 closely interacts with BDNF in hippocampal neurons and is associated with Alzheimer's disease progression.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[36955] doi:10.3390/nu15081938 [paper, data]

Metabolomic Profiling of Asparagine Deprivation in Asparagine Synthetase Deficiency Patient-Derived Cells.

Journal: Nutrients

Status: data only, 6 datasets cited

[36956] doi:10.34133/research.0121 [paper, data]

Striatal CDK5 Regulates Cholinergic Neuron Activation and Dyskinesia-like Behaviors through BK Channels.

Journal: Research (Washington, D.C.)

Status: data only, 1 dataset cited

[36957] doi:10.3892/etm.2023.11954 [paper, data]

Estrogen alleviates acute and chronic itch in mice.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

Monday, 17 April 2023 (38 papers, 3 on this page)

[36958] doi:10.1002/hbm.26304 [paper, repository]

Persistent homology-based functional connectivity and its association with cognitive ability: Life-span study.

Journal: Human brain mapping

Authors' code: hyunnamryu/PHfconn (no license)

Status: code verified, 11 files readable

[36959] doi:10.1002/hbm.26307 [paper]

Dynamic brain responses to Russian word acquisition among Chinese adult learners: An event-related potential study.

Journal: Human brain mapping

Status: code on request

[36960] doi:10.1002/hbm.26309 [paper, repository]

Representation of the inferred relationships in a map-like space.

Journal: Human brain mapping

Authors' code: gitee.com/jh1281/objectspace_scripts (no license)

Status: code verified, 3 files readable, 1 match

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