Every paper, by date: page 166

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 166 of 200: 17 April 2023 to 7 April 2023.

Monday, 17 April 2023 (38 papers, 35 on this page)

[36961] doi:10.1007/s11682-023-00770-w [paper, data]

The longitudinal relation between executive functioning and multilayer network topology in glioma patients.

Journal: Brain imaging and behavior

Status: data only, 2 datasets cited

[36962] doi:10.1016/j.cell.2023.03.025 [paper, repository]

Pyramidal neurons form active, transient, multilayered circuits perturbed by autism-associated mutations at the inception of neocortex.

Journal: Cell

Authors' code: Zenodo 7689306 (CC-BY-4.0), Zenodo 7689305 (CC-BY-4.0)

Status: code verified, 108 files readable, 20 matches

[36963] doi:10.1016/j.nbd.2023.106128 [paper, repository]

RGS14 limits seizure-induced mitochondrial oxidative stress and pathology in hippocampus.

Journal: Neurobiology of disease

Authors' code: edammer/GOparallel (MIT), baderlab.org/genesets (no license)

Status: code verified, 3 files readable, 1 match

[36964] doi:10.1016/j.nicl.2023.103405 [paper, data]

Explainable classification of Parkinson's disease using deep learning trained on a large multi-center database of T1-weighted MRI datasets.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[36965] doi:10.1038/s41467-023-37878-y [paper, data]

The basolateral amygdala-anterior cingulate pathway contributes to depression-like behaviors and comorbidity with chronic pain behaviors in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[36966] doi:10.1038/s41591-023-02268-w [paper, repository]

Genomics of perivascular space burden unravels early mechanisms of cerebral small vessel disease.

Journal: Nature medicine

Authors' code: statgen/METAL (BSD-2-Clause), bulik/ldsc (GPL-3.0), erwinerdem/STEAP (GPL-3.0), pboutinaud/SHIVA_PVS (other), JonJala/mtag (GPL-3.0), perslab/CELLECT (GPL-3.0), thewonlab/H-MAGMA (no license)

Status: code verified, 211 files readable, 4 matches

[36967] doi:10.1038/s41597-023-02132-z [paper, data]

Integrated transcriptome catalog of Tenualosa ilisha as a resource for gene discovery and expression profiling.

Journal: Scientific data

Status: data only, 1 dataset cited

[36968] doi:10.1038/s41598-023-32376-z [paper, data]

Imbalanced expression of cation-chloride cotransporters as a potential therapeutic target in an Angelman syndrome mouse model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[36969] doi:10.1038/s41598-023-32649-7 [paper, repository]

A whole-brain model of the neural entropy increase elicited by psychedelic drugs.

Journal: Scientific reports

Authors' code: paulodder/dmf_entropy (no license)

Status: code verified, 11 files readable, 1 match

[36970] doi:10.1073/pnas.2217396120 [paper, data]

Octopamine metabolically reprograms astrocytes to confer neuroprotection against α-synuclein.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36971] doi:10.1073/pnas.2218617120 [paper, repository]

Merged magnetic resonance and light sheet microscopy of the whole mouse brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: YuqiTianCIVM/MRH_LSM_registration (no license), google/neuroglancer (Apache-2.0), Zenodo 5573294 (other-open)

Status: code verified, 1,522 files readable

[36972] doi:10.1073/pnas.2221141120 [paper, repository]

The temporal and contextual stability of activity levels in hippocampal CA1 cells.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: yuichirohayashi/CA1fourenv3d (no license)

Status: dead link

[36973] doi:10.1073/pnas.2300252120 [paper, data]

Spatiotemporally distributed frontotemporal networks for sentence reading.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[36974] doi:10.1117/1.nph.10.2.023520 [paper, repository]

Shedding light on functional near-infrared spectroscopy and open science practices.

Journal: Neurophotonics

Authors' code: codeocean.com/signup/spie (no license)

Status: code found, still to be checked

[36975] doi:10.1155/2023/5677865 [paper, data]

Transcutaneous Electrical Nerve Stimulation (TENS) Alleviates Brain Ischemic Injury by Regulating Neuronal Oxidative Stress, Pyroptosis, and Mitophagy.

Journal: Mediators of inflammation

Status: data only, 1 dataset cited

[36976] doi:10.1186/s12915-023-01559-5 [paper, data]

The retinal pigment epithelium displays electrical excitability and lateral signal spreading.

Journal: BMC biology

Status: data only, 2 datasets cited

[36977] doi:10.1186/s13024-023-00616-5 [paper]

NF-κB is a critical mediator of post-mitotic senescence in oligodendrocytes and subsequent white matter loss.

Journal: Molecular neurodegeneration

Status: code on request

[36978] doi:10.1212/wnl.0000000000207277 [paper]

Functional Connectivity From Disease Epicenters in Frontotemporal Dementia.

Journal: Neurology

Status: code on request

[36979] doi:10.1371/journal.pcbi.1010993 [paper, repository]

Dual contribution of ASIC1a channels in the spinal processing of pain information by deep projection neurons revealed by computational modeling.

Journal: PLoS computational biology

Authors' code: modeldb:267666 (no license)

Status: code found, still to be checked

[36980] doi:10.1371/journal.pcbi.1011046 [paper, repository]

How synaptic strength, short-term plasticity, and input synchrony contribute to neuronal spike output.

Journal: PLoS computational biology

Authors' code: gschuhknecht/Buchholz_GastoneGuilabert_2023 (no license)

Status: code verified, 13 files readable, 6 matches

[36981] doi:10.1371/journal.pone.0282349 [paper, repository]

Sex and estrous cycle affect experience-dependent plasticity in mouse primary visual cortex.

Journal: PloS one

Authors' code: gavorniklab.bu.edu/supplemental-materials.html (no license)

Status: code verified

[36982] doi:10.1371/journal.pone.0284418 [paper, data]

Brain tumor detection and segmentation: Interactive framework with a visual interface and feedback facility for dynamically improved accuracy and trust.

Journal: PloS one

Status: data only, 4 datasets cited

[36983] doi:10.3389/fnana.2023.1116948 [paper, repository]

Abnormal prenatal brain development in Chiari II malformation.

Journal: Frontiers in neuroanatomy

Authors' code: hub.docker.com/r/davoodk (no license)

Status: code verified

[36984] doi:10.3389/fncir.2023.1138774 [paper, repository]

Assessment of a single trial impact on the amplitude of the averaged event related potentials.

Journal: Frontiers in neural circuits

Authors' code: george-fedorov/erp-correlations (GPL-2.0)

Status: code verified, 4 files readable

[36985] doi:10.3389/fnimg.2023.1068616 [paper, repository]

Optimizing cognitive neuroscience experiments for separating event- related fMRI BOLD responses in non-randomized alternating designs.

Journal: Frontiers in neuroimaging

Authors' code: soukhind2/deconv (GPL-3.0)

Status: code verified, 14 files readable, 7 matches

[36986] doi:10.3389/fnins.2023.1125230 [paper, repository]

A sequential learning model with GNN for EEG-EMG-based stroke rehabilitation BCI.

Journal: Frontiers in neuroscience

Authors' code: CM-connectivity/CM-graph (MIT)

Status: code verified, 48 files readable, 5 matches

[36987] doi:10.3389/fnmol.2023.1126438 [paper, data]

Transcriptional networks of transient cell states during human prefrontal cortex development.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[36988] doi:10.3389/fnmol.2023.1170313 [paper, data]

Peroxisomal defects in microglial cells induce a disease-associated microglial signature.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[36989] doi:10.3389/fonc.2023.1148475 [paper]

Clinical features and molecular genetics associated with brain metastasis in suspected early-stage non-small cell lung cancer.

Journal: Frontiers in oncology

Status: data only

[36990] doi:10.3389/fpsyt.2023.1115374 [paper, repository]

Identification of atypical sleep microarchitecture biomarkers in children with autism spectrum disorder.

Journal: Frontiers in psychiatry

Authors' code: raphaelvallat/yasa_classifier (BSD-3-Clause)

Status: code verified, 36 files readable, 4 matches

[36991] doi:10.3389/fpsyt.2023.1136154 [paper]

Integrated analysis of endoplasmic reticulum stress regulators' expression identifies distinct subtypes of autism spectrum disorder.

Journal: Frontiers in psychiatry

Status: data only

[36992] doi:10.7554/elife.81067 [paper, repository]

Biological brain age prediction using machine learning on structural neuroimaging data: Multi-cohort validation against biomarkers of Alzheimer's disease and neurodegeneration stratified by sex.

Journal: eLife

Authors' code: xgboost.readthedocs.io (no license), slundberg/shap (MIT)

Status: code verified, 66 files readable

[36993] doi:10.7554/elife.84512 [paper, repository]

Spike-phase coupling patterns reveal laminar identity in primate cortex.

Journal: eLife

Authors' code: zwdsalk/laminarphasecoupling (no license), mullerlab/generalizedphase (no license), mullerlab/generalized-phase (GPL-3.0)

Status: code verified, 21 files readable, 7 matches

[36994] doi:10.7554/elife.85064 [paper, repository]

Ventral striatum dopamine release encodes unique properties of visual stimuli in mice.

Journal: eLife

Authors' code: jelliottrobinson/BonsaiLoomStim (GPL-3.0), tdt.com/docs/sdk (no license)

Status: code verified, 2 files readable

[36995] doi:10.7554/elife.85202 [paper, repository]

Global change in brain state during spontaneous and forced walk in <i>Drosophila</i> is composed of combined activity patterns of different neuron classes.

Journal: eLife

Authors' code: sophie63/flylfm (BSD-2-Clause)

Status: code verified, 516 files readable

Sunday, 16 April 2023 (5 papers)

[36996] doi:10.1002/brb3.3006 [paper, repository]

Associations between resting-state neural connectivity and positive affect in social anxiety disorder.

Journal: Brain and behavior

Authors' code: corinnecarlton/RSP (no license)

Status: code verified, 1 file readable

[36997] doi:10.1002/brb3.3015 [paper, data]

Evaluating methods for measuring background connectivity in slow event-related functional magnetic resonance imaging designs.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[36998] doi:10.1002/cam4.5961 [paper]

Heterogeneity in intracranial relapses after complete resection of lung adenocarcinoma: Distinct features of brain-only relapse versus synchronous extracranial relapse.

Journal: Cancer medicine

Status: code on request

[36999] doi:10.1016/j.neuroimage.2023.120120 [paper, repository]

Hemodynamic timing in resting-state and breathing-task BOLD fMRI.

Journal: NeuroImage

Authors' code: BrightLab-ANVIL/Gong_2023 (MIT), Zenodo 7056657 (other-open), raystick/breathing-task-visual-psychopy (Apache-2.0)

Status: code verified, 24 files readable, 8 matches

[37000] doi:10.3390/brainsci13040670 [paper, data]

Histone Deacetylase 4 Inhibition Reduces Rotenone-Induced Alpha-Synuclein Accumulation via Autophagy in SH-SY5Y Cells.

Journal: Brain sciences

Status: data only, 1 dataset cited

Saturday, 15 April 2023 (11 papers)

[37001] doi:10.1007/s11010-023-04730-2 [paper, data]

Identification of novel microRNAs in the embryonic mouse brain using deep sequencing.

Journal: Molecular and cellular biochemistry

Status: data only, 1 dataset cited

[37002] doi:10.1016/j.celrep.2023.112380 [paper, data]

Transient suppression of SUMOylation in embryonic stem cells generates embryo-like structures.

Journal: Cell reports

Status: code on request, 2 datasets cited

[37003] doi:10.1016/j.heliyon.2023.e15286 [paper]

Bioinformatic analysis identifies GPR91 as a potential key gene in brain injury after deep hypothermic low flow.

Journal: Heliyon

Status: data only

[37004] doi:10.1016/j.isci.2023.106675 [paper]

Brain-computer interface enhanced by virtual reality training for controlling a lower limb exoskeleton.

Journal: iScience

Status: code on request

[37005] doi:10.1038/s41467-023-37928-5 [paper, repository]

Transcriptomics of Hirschsprung disease patient-derived enteric neural crest cells reveals a role for oxidative phosphorylation.

Journal: Nature communications

Authors' code: ellylab/HSCR-scRNAseq-paper (no license), Zenodo 7710574 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[37006] doi:10.1038/s41598-023-33198-9 [paper]

Larger left hippocampal presubiculum is associated with lower risk of antisocial behavior in healthy adults with childhood conduct history.

Journal: Scientific reports

Status: code on request

[37007] doi:10.1038/s42003-023-04811-4 [paper, repository]

Stress deficits in reward behaviour are associated with and replicated by dysregulated amygdala-nucleus accumbens pathway function in mice.

Journal: Communications biology

Authors' code: platrad-uzh/CSS_effects_on_BA-NAc_rnaseq (no license)

Status: code verified, 3 files readable, 8 matches

[37008] doi:10.1186/s12967-023-04078-7 [paper]

Compensatory remodeling of a septo-hippocampal GABAergic network in the triple transgenic Alzheimer's mouse model.

Journal: Journal of translational medicine

Status: code on request

[37009] doi:10.1186/s13287-023-03302-x [paper, data]

A beginner's guide on the use of brain organoids for neuroscientists: a systematic review.

Journal: Stem cell research & therapy

Status: data only, 4 datasets cited

[37010] doi:10.1186/s13293-023-00503-0 [paper, repository]

Sex differences in the transcriptome of extracellular vesicles secreted by fetal neural stem cells and effects of chronic alcohol exposure.

Journal: Biology of sex differences

Authors' code: daehyukchung/EV_Cell_Transcriptomic (no license)

Status: code verified, 2 files readable, 13 matches

[37011] doi:10.3390/cells12081168 [paper, data]

Down Syndrome Altered Cell Composition in Blood, Brain, and Buccal Swab Samples Profiled by DNA-Methylation-Based Cell-Type Deconvolution.

Journal: Cells

Status: data only, 1 dataset cited

Friday, 14 April 2023 (28 papers)

[37012] doi:10.1002/advs.202204824 [paper, data]

Neuregulin4 Acts on Hypothalamic ErBb4 to Excite Oxytocin Neurons and Preserve Metabolic Homeostasis.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 2 datasets cited

[37013] doi:10.1007/s10827-023-00849-9 [paper, repository]

Responses in fast-spiking interneuron firing rates to parameter variations associated with degradation of perineuronal nets.

Journal: Journal of computational neuroscience

Authors' code: Zenodo 7688284 (CC-BY-4.0), KineOdegardHanssen/NEURON_Allen_capacitance (no license)

Status: code verified, 130 files readable

[37014] doi:10.1016/j.celrep.2023.112386 [paper, repository]

Parallel functional architectures within a single dendritic tree.

Journal: Cell reports

Authors' code: Zenodo 7677374 (CC-BY-4.0)

Status: code verified

[37015] doi:10.1016/j.isci.2023.106669 [paper, data]

Conditional deletion of LRRC8A in the brain reduces stroke damage independently of swelling-activated glutamate release.

Journal: iScience

Status: code on request, 1 dataset cited

[37016] doi:10.1016/j.isci.2023.106670 [paper]

Casein kinase 1α is required to maintain murine hypothalamic pro-opiomelanocortin expression.

Journal: iScience

Status: code on request

[37017] doi:10.1016/j.isci.2023.106674 [paper]

Mitochondrial Bcl-xL promotes brain synaptogenesis by controlling non-lethal caspase activation.

Journal: iScience

Status: code on request

[37018] doi:10.1016/j.mcpro.2023.100546 [paper, repository]

Cellular Proteomic Profiling Using Proximity Labeling by TurboID-NES in Microglial and Neuronal Cell Lines.

Journal: Molecular & cellular proteomics : MCP

Authors' code: edammer/MQ1pepAnnotate (MIT)

Status: code verified, 5 files readable, 4 matches

[37019] doi:10.1038/s41467-023-37804-2 [paper]

A distributed and efficient population code of mixed selectivity neurons for flexible navigation decisions.

Journal: Nature communications

Status: code on request

[37020] doi:10.1038/s41531-023-00495-z [paper, repository]

Aberrant neurophysiological signaling associated with speech impairments in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: aiwiesman/QPN_SpeechAnalysis (GPL-3.0)

Status: code verified, 4 files readable, 4 matches

[37021] doi:10.1038/s41597-023-02057-7 [paper, repository]

A peptide-centric quantitative proteomics dataset for the phenotypic assessment of Alzheimer's disease.

Journal: Scientific data

Authors' code: searleb/encyclopedia (Apache-2.0), ProteoWizard/pwiz (Apache-2.0), uw-maccosslab/ADBrainCleanDiagDIA (MIT)

Status: code verified, 1,065 files readable, 4 matches

[37022] doi:10.1038/s41597-023-02087-1 [paper, repository]

Big Field of View MRI T1w and FLAIR Template - NMRI225.

Journal: Scientific data

Authors' code: barbrakr/NMRI225 (no license)

Status: code verified, 4 files readable, 4 matches

[37023] doi:10.1038/s41597-023-02105-2 [paper, repository]

A new kinematic dataset of lower limbs action for balance testing.

Journal: Scientific data

Authors' code: figshare 20579541 (CC0-1.0), bvh.noitom.cn (no license)

Status: code verified

[37024] doi:10.1038/s41597-023-02106-1 [paper, repository]

Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes.

Journal: Scientific data

Authors' code: mousebytes.ca/home (no license), Rodent-Cognition-Core/CBAS (GPL-3.0)

Status: code verified, 236 files readable, 1 match

[37025] doi:10.1038/s41597-023-02123-0 [paper, repository]

A comprehensive dataset of annotated brain metastasis MR images with clinical and radiomic data.

Journal: Scientific data

Authors' code: ysuter/OpenBTAI-radiomics (MIT), figshare 20579541 (CC0-1.0)

Status: code verified, 5 files readable, 1 match

[37026] doi:10.1073/pnas.2205786120 [paper, data]

Molecular profiling of the stroke-induced alterations in the cerebral microvasculature reveals promising therapeutic candidates.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37027] doi:10.1098/rsfs.2022.0072 [paper, repository]

The scaling of goals from cellular to anatomical homeostasis: an evolutionary simulation, experiment and analysis.

Journal: Interface focus

Authors' code: LPioL/scalefreecognition (no license), doi:10.6084/m9.figshare.c.6463335 (no license)

Status: code verified, 7 files readable, 3 matches

[37028] doi:10.1126/sciadv.abo2467 [paper, repository]

Characterization of altered molecular mechanisms in Parkinson's disease through cell type-resolved multiomics analyses.

Journal: Science advances

Authors' code: Zenodo 6979139 (CC-BY-4.0)

Status: code verified, 183 files readable, 23 matches

[37029] doi:10.1126/sciadv.ade2812 [paper, repository]

Consensus molecular environment of schizophrenia risk genes in coexpression networks shifting across age and brain regions.

Journal: Science advances

Authors' code: LieberInstitute/10xPilot_snRNAseq-human (Artistic-2.0), LieberInstitute/Brain_WGCNA (MIT)

Status: code verified, 192 files readable, 25 matches

[37030] doi:10.1126/science.adg6518 [paper, repository]

Base editing rescue of spinal muscular atrophy in cells and in mice.

Journal: Science (New York, N.Y.)

Authors' code: tsailabSJ/circleseq (AGPL-3.0)

Status: code verified, 27 files readable

[37031] doi:10.1155/2023/6755569 [paper, data]

Identification of Hub Genes and Potential Molecular Pathogenesis in Substantia Nigra in Parkinson's Disease via Bioinformatics Analysis.

Journal: Parkinson's disease

Status: data only, 1 dataset cited

[37032] doi:10.12688/wellcomeopenres.19166.1 [paper, data]

Predicting Acute and Post-Recovery Outcomes in Cerebral Malaria and Other Comas by Optical Coherence Tomography (OCT in CM) - A protocol for an observational cohort study of Malawian children.

Journal: Wellcome open research

Status: data only, 1 dataset cited

[37033] doi:10.1371/journal.pcbi.1010719 [paper, repository]

Recurrent predictive coding models for associative memory employing covariance learning.

Journal: PLoS computational biology

Authors' code: C16Mftang/covariance-learning-PCNs (no license)

Status: code verified, 23 files readable, 5 matches

[37034] doi:10.1371/journal.pmed.1004222 [paper, repository]

Evaluation of a community health worker home visit intervention to improve child development in South Africa: A cluster-randomized controlled trial.

Journal: PLoS medicine

Authors' code: OSF pjhk4 (no license)

Status: code verified

[37035] doi:10.1523/eneuro.0344-22.2023 [paper, repository]

Gas7 Is a Novel Dendritic Spine Initiation Factor.

Journal: eNeuro

Authors' code: laurilahti/neural-image-brightness-cluster-analysis-script (CC-BY-4.0)

Status: code verified, 4 files readable, 4 matches

[37036] doi:10.18632/aging.204655 [paper, data]

lncRNA <i>TUSC7</i> sponges <i>miR-10a-5p</i> and inhibits BDNF/ERK pathway to suppress glioma cell proliferation and migration.

Journal: Aging

Status: data only, 1 dataset cited

[37037] doi:10.3389/fnmol.2023.1168695 [paper, repository]

MicroRNA 3' ends shorten during adolescent brain maturation.

Journal: Frontiers in molecular neuroscience

Authors' code: Gu-Lab-RBL-NCI/QuagmiR (MIT)

Status: code verified, 4 files readable

[37038] doi:10.3390/bioengineering10040475 [paper, data]

WBM-DLNets: Wrapper-Based Metaheuristic Deep Learning Networks Feature Optimization for Enhancing Brain Tumor Detection.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 2 datasets cited

[37039] doi:10.3390/diagnostics13081417 [paper, data]

NAMSTCD: A Novel Augmented Model for Spinal Cord Segmentation and Tumor Classification Using Deep Nets.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Thursday, 13 April 2023 (29 papers)

[37040] doi:10.1002/hbm.26274 [paper, data]

Automatic and manual segmentation of the piriform cortex: Method development and validation in patients with temporal lobe epilepsy and Alzheimer's disease.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[37041] doi:10.1002/hbm.26279 [paper, repository]

The central role of the left inferior longitudinal fasciculus in the face-name retrieval network.

Journal: Human brain mapping

Authors' code: neurolabusc/Clinical (BSD-2-Clause)

Status: code verified, 26 files readable, 2 matches

[37042] doi:10.1002/hbm.26285 [paper, repository]

Every individual makes a difference: A trinity derived from linking individual brain morphometry, connectivity and mentalising ability.

Journal: Human brain mapping

Authors' code: andlab-um/trinity (CC-BY-NC-4.0)

Status: code verified, 16 files readable

[37043] doi:10.1002/hbm.26299 [paper, repository]

The relationship between resting-state amplitude fluctuations and memory-related deactivations of the default mode network in young and older adults.

Journal: Human brain mapping

Authors' code: OSF gfw85 (no license), OSF nzh2g (no license), JoramSoch/MMA (GPL-3.0)

Status: code verified, 18 files readable, 8 matches

[37044] doi:10.1016/j.celrep.2023.112394 [paper]

A plasma membrane-associated glycolytic metabolon is functionally coupled to K&lt;sub&gt;ATP&lt;/sub&gt; channels in pancreatic α and β cells from humans and mice.

Journal: Cell reports

Status: code on request

[37045] doi:10.1016/j.dcn.2023.101244 [paper, repository]

Brief mock-scan training reduces head motion during real scanning for children: A growth curve study.

Journal: Developmental cognitive neuroscience

Authors' code: zuoxinian/CCS (GPL-2.0)

Status: code verified, 732 files readable, 7 matches

[37046] doi:10.1016/j.isci.2023.106664 [paper]

Neuronal SNAP-23 is critical for synaptic plasticity and spatial memory independently of NMDA receptor regulation.

Journal: iScience

Status: code on request

[37047] doi:10.1016/j.isci.2023.106668 [paper]

Alterations of endogenous pain-modulatory system of the cerebral cortex in the neuropathic pain.

Journal: iScience

Status: code on request

[37048] doi:10.1016/j.neuroimage.2023.120109 [paper, repository]

Benchmarking explanation methods for mental state decoding with deep learning models.

Journal: NeuroImage

Authors' code: athms/xai-brain-decoding-benchmark (no license), Zenodo 852659 (Apache-2.0), Zenodo 596855 (Apache-2.0), nipy/nipype (Apache-2.0)

Status: code verified, 2,878 files readable, 6 matches

[37049] doi:10.1038/s41467-023-37848-4 [paper, repository]

Motor cortex gates distractor stimulus encoding in sensory cortex.

Journal: Nature communications

Authors' code: figshare 22191193 (CC-BY-4.0)

Status: code verified

[37050] doi:10.1038/s41598-023-32571-y [paper, data]

Increasing cell culture density during a developmental window prevents fated rod precursors derailment toward hybrid rod-glia cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37051] doi:10.1038/s41598-023-33290-0 [paper, data]

Retention of visuo-proprioceptive recalibration in estimating hand position.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37052] doi:10.1073/pnas.2218007120 [paper, repository]

Early path dominance as a principle for neurodevelopment.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: rrazban/percolating_brain (no license)

Status: code verified, 32 files readable, 7 matches

[37053] doi:10.1088/1741-2552/acc35c [paper, repository]

Microneurography as a minimally invasive method to assess target engagement during neuromodulation.

Journal: Journal of neural engineering

Authors' code: ludwig-lab/pyeCAP (LGPL-2.1)

Status: code verified, 52 files readable, 2 matches

[37054] doi:10.1093/braincomms/fcad121 [paper, repository]

Stimulation of non-motor subthalamic nucleus impairs selective response inhibition via prefrontal connectivity.

Journal: Brain communications

Authors' code: lead-dbs.org (no license), JoWld/PD_DBS_Antisac (no license)

Status: code verified, 20 files readable, 1 match

[37055] doi:10.1093/pnasnexus/pgad134 [paper, data]

Selective inhibition of somatostatin-positive dentate hilar interneurons induces age-related cellular changes and cognitive dysfunction.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[37056] doi:10.1093/texcom/tgad005 [paper, data]

Functional relevance of the extrastriate body area for visual and haptic object recognition: a preregistered fMRI-guided TMS study.

Journal: Cerebral cortex communications

Status: data only, 1 dataset cited

[37057] doi:10.1128/mbio.00510-23 [paper, data]

Bacterial TLR2/6 Ligands Block Ciliogenesis, Derepress Hedgehog Signaling, and Expand the Neocortex.

Journal: mBio

Status: data only, 1 dataset cited

[37058] doi:10.1155/2023/7284986 [paper, data]

Lama2 And Samsn1 Mediate the Effects of Brn4 on Hippocampal Neural Stem Cell Proliferation and Differentiation.

Journal: Stem cells international

Status: data only, 1 dataset cited

[37059] doi:10.1186/s13073-023-01175-6 [paper, repository]

Stalled oligodendrocyte differentiation in IDH-mutant gliomas.

Journal: Genome medicine

Authors' code: broadinstitute/inferCNV (other)

Status: code verified, 82 files readable, 2 matches

[37060] doi:10.1186/s13287-023-03330-7 [paper, data]

Menstrual blood-derived endometrial stem cells alleviate neuroinflammation by modulating M1/M2 polarization in cell and rat Parkinson's disease models.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[37061] doi:10.1371/journal.pone.0284357 [paper, data]

Bioinformatic analysis predicts that ethanol exposure during early development causes alternative splicing alterations of genes involved in RNA post-transcriptional regulation.

Journal: PloS one

Status: data only, 1 dataset cited

[37062] doi:10.1523/jneurosci.2102-22.2023 [paper, data]

Cross-Platform Synaptic Network Analysis of Human Entorhinal Cortex Identifies TWF2 as a Modulator of Dendritic Spine Length.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[37063] doi:10.3389/fgene.2023.1156322 [paper, data]

An effective prognostic model for assessing prognosis of non-small cell lung cancer with brain metastases.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[37064] doi:10.3389/fnins.2023.1119933 [paper, data]

Imaging-based frequency mapping for cochlear implants - Evaluated using a daily randomized controlled trial.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37065] doi:10.3389/fphar.2023.1164150 [paper, data]

Gut microbiota, a hidden protagonist of traditional Chinese medicine for acute ischemic stroke.

Journal: Frontiers in pharmacology

Status: data only, 6 datasets cited

[37066] doi:10.3389/fphar.2023.1185071 [paper, data]

Targeting ferroptosis as novel therapeutic approaches for epilepsy.

Journal: Frontiers in pharmacology

Status: data only, 5 datasets cited

[37067] doi:10.4103/japtr.japtr_680_22 [paper]

Effects of mobile phone electromagnetic radiation on thyroid glands and hormones in <i>Rattus norvegicus</i> brain: An analysis of thyroid function, reactive oxygen species, and monocarboxylate transporter 8.

Journal: Journal of advanced pharmaceutical technology & research

Status: data only

[37068] doi:10.7554/elife.85488 [paper, repository]

Differential ripple propagation along the hippocampal longitudinal axis.

Journal: eLife

Authors' code: alleninstitute/ecephys_spike_sorting (BSD-2-Clause), RobertoDF/De-Filippo-et-al-2022 (MPL-2.0)

Status: code verified, 272 files readable, 21 matches

Wednesday, 12 April 2023 (28 papers)

[37069] doi:10.1002/hbm.26296 [paper, repository]

Graph-matching distance between individuals' functional connectomes varies with relatedness, age, and cognitive score.

Journal: Human brain mapping

Authors' code: kjamison/fmriclean (MIT), zijin-gu/scfccoupling (no license), ChangSuBiostats/pairwise_graph_matching (no license), hbukhari174/GM_HCP (no license)

Status: code verified, 38 files readable, 6 matches

[37070] doi:10.1016/j.jcmg.2023.01.016 [paper, data]

Ischemic Heart Disease and Vascular Risk Factors Are Associated With Accelerated Brain Aging.

Journal: JACC. Cardiovascular imaging

Status: data only, 1 dataset cited

[37071] doi:10.1021/acschemneuro.2c00817 [paper, repository]

Within-Mice Comparison of Microdialysis and Fiber Photometry-Recorded Dopamine Biosensor during Amphetamine Response.

Journal: ACS chemical neuroscience

Authors' code: Ejdrup/microdialysis-photometry-comparison (no license)

Status: code verified, 2 files readable

[37072] doi:10.1038/s41467-023-37392-1 [paper, repository]

Predictive and robust gene selection for spatial transcriptomics.

Journal: Nature communications

Authors' code: theislab/scanpy (BSD-3-Clause), solevillar/scGeneFit-python (MIT), MarioniLab/geneBasisR (MIT), AllenInstitute/coupledAE-patchseq (BSD-2-Clause), iancovert/persist (MIT), Zenodo 7714685 (other-open)

Status: code verified, 204 files readable, 6 matches

[37073] doi:10.1038/s41467-023-37575-w [paper, repository]

Peripersonal encoding of forelimb proprioception in the mouse somatosensory cortex.

Journal: Nature communications

Authors' code: cortex-lab/Suite2P (other), figshare 22056485 (CC-BY-4.0)

Status: code verified, 217 files readable, 2 matches

[37074] doi:10.1038/s41586-023-05927-7 [paper, data]

Astrocyte-neuron subproteomes and obsessive-compulsive disorder mechanisms.

Journal: Nature

Status: data only, 2 datasets cited

[37075] doi:10.1038/s41586-023-05928-6 [paper, repository]

Dynamic synchronization between hippocampal representations and stepping.

Journal: Nature

Authors' code: LorenFrankLab/track_linearization (MIT), LorenFrankLab (no license), Zenodo 7615939 (CC-BY-4.0)

Status: code verified, 38 files readable, 7 matches

[37076] doi:10.1038/s41598-023-32518-3 [paper]

An interpretable and interactive deep learning algorithm for a clinically applicable retinal fundus diagnosis system by modelling finding-disease relationship.

Journal: Scientific reports

Status: code on request

[37077] doi:10.1038/s41598-023-32924-7 [paper, repository]

Reproducible Tract Profiles 2 (RTP2) suite, from diffusion MRI acquisition to clinical practice and research.

Journal: Scientific reports

Authors' code: garikoitz/RTP-pipeline (no license), garikoitz/launchcontainers (MIT), vistalab/scitran (GPL-3.0), garikoitz/rtp-preproc (no license)

Status: code verified, 1,211 files readable, 12 matches

[37078] doi:10.1038/s41598-023-33016-2 [paper]

The hyperexcitability of laterodorsal tegmentum cholinergic neurons accompanies adverse behavioral and cognitive outcomes of prenatal stress.

Journal: Scientific reports

Status: code on request

[37079] doi:10.1038/s41598-023-33231-x [paper, repository]

Stronger functional connectivity during reading contextually predictable words in slow readers.

Journal: Scientific reports

Authors' code: OSF cgj79 (no license)

Status: code verified, 3 files readable, 3 matches

[37080] doi:10.1038/s41746-023-00812-z [paper]

Enhancing attention in children using an integrated cognitive-physical videogame: A pilot study.

Journal: NPJ digital medicine

Status: code on request

[37081] doi:10.1038/s42003-023-04796-0 [paper, repository]

Correspondence of functional connectivity gradients across human isocortex, cerebellum, and hippocampus.

Journal: Communications biology

Authors' code: Zenodo 7764905 (other-open), yutakatsumi/gradient_correlations (no license)

Status: code verified, 12 files readable, 2 matches

[37082] doi:10.1073/pnas.2217864120 [paper, data]

A Cdk5-derived peptide inhibits Cdk5/p25 activity and improves neurodegenerative phenotypes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37083] doi:10.1091/mbc.e22-12-0543 [paper, data]

Microenvironmental mechanoactivation through Yap/Taz suppresses chondrogenic gene expression.

Journal: Molecular biology of the cell

Status: data only, 1 dataset cited

[37084] doi:10.1098/rsos.220997 [paper, repository]

Evolutionary process toward avian-like cephalic thermoregulation system in Theropoda elucidated based on nasal structures.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6486119 (no license)

Status: code found, still to be checked

[37085] doi:10.1098/rsos.230013 [paper, repository]

Barbigerone prevents scopolamine-induced memory impairment in rats by inhibiting oxidative stress and acetylcholinesterase levels.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6497817 (no license)

Status: code found, still to be checked

[37086] doi:10.1117/1.nph.10.2.025003 [paper]

Evaluation of residual cognition in patients with disorders of consciousness based on functional near-infrared spectroscopy.

Journal: Neurophotonics

Status: code on request

[37087] doi:10.1126/sciadv.adc8933 [paper, repository]

Single-cell RNA sequencing highlights intratumor heterogeneity and intercellular network featured in adamantinomatous craniopharyngioma.

Journal: Science advances

Authors' code: Zenodo 7199080 (CC-BY-4.0)

Status: code verified, 1 file readable, 3 matches

[37088] doi:10.1126/sciadv.ade4083 [paper, data]

Prosodic cues enhance infants' sensitivity to nonadjacent regularities.

Journal: Science advances

Status: data only, 1 dataset cited

[37089] doi:10.1186/s12864-023-09247-y [paper, data]

Splicing complexity as a pivotal feature of alternative exons in mammalian species.

Journal: BMC genomics

Status: data only, 3 datasets cited

[37090] doi:10.1371/journal.pcbi.1010781 [paper, repository]

Complex spatiotemporal oscillations emerge from transverse instabilities in large-scale brain networks.

Journal: PLoS computational biology

Authors' code: pclus/transverse-instabilities (GPL-3.0)

Status: code verified, 10 files readable, 2 matches

[37091] doi:10.1371/journal.pcbi.1011006 [paper, repository]

Purely STDP-based assembly dynamics: Stability, learning, overlaps, drift and aging.

Journal: PLoS computational biology

Authors' code: axionmonodromy/purely-STDP-assemblies (no license), Zenodo 7727880 (other-open)

Status: code verified, 44 files readable, 2 matches

[37092] doi:10.1371/journal.pcbi.1011012 [paper, data]

Identifying the engagement of a brain network during a targeted tDCS-fMRI experiment using a machine learning approach.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[37093] doi:10.3389/fnmol.2023.1148219 [paper, data]

Denervated mouse CA1 pyramidal neurons express homeostatic synaptic plasticity following entorhinal cortex lesion.

Journal: Frontiers in molecular neuroscience

Status: data only, 2 datasets cited

[37094] doi:10.3390/cancers15082253 [paper, repository]

MRI-Based Deep Learning Tools for MGMT Promoter Methylation Detection: A Thorough Evaluation.

Journal: Cancers

Authors' code: kaggle.com/competitions/rsna-miccai-brain-tumor-radiogenomic-classification (no license), Lucas-rbnt/MGMT_conf (no license)

Status: code verified, 19 files readable, 4 matches

[37095] doi:10.7554/elife.82925 [paper, repository]

Exploring the role of the outer subventricular zone during cortical folding through a physics-based model.

Journal: eLife

Authors' code: SaeedZarzor/BFSimulator (MIT)

Status: code verified, 28 files readable, 10 matches

[37096] doi:10.7717/peerj.15219 [paper, data]

Transcriptomics reveals the effects of NTRK1 on endoplasmic reticulum stress response-associated genes in human neuronal cell lines.

Journal: PeerJ

Status: data only, 1 dataset cited

Tuesday, 11 April 2023 (37 papers)

[37097] doi:10.1016/j.celrep.2023.112353 [paper, data]

Decoding the molecular crosstalk between grafted stem cells and the stroke-injured brain.

Journal: Cell reports

Status: code on request, 1 dataset cited

[37098] doi:10.1016/j.celrep.2023.112371 [paper]

Connexin 43-mediated neurovascular interactions regulate neurogenesis in the adult brain subventricular zone.

Journal: Cell reports

Status: code on request

[37099] doi:10.1016/j.celrep.2023.112375 [paper, data]

Circadian protein TIMELESS regulates synaptic function and memory by modulating cAMP signaling.

Journal: Cell reports

Status: data only, 5 datasets cited

[37100] doi:10.1016/j.celrep.2023.112384 [paper, repository]

Spike rates of frontal eye field neurons predict reaction times in a spatial attention task.

Journal: Cell reports

Authors' code: Zenodo 7712795 (CC-BY-4.0)

Status: code verified, 5 files readable

[37101] doi:10.1016/j.isci.2023.106609 [paper, repository]

Dynamic segregation and integration of brain functional networks associated with emotional arousal.

Journal: iScience

Authors' code: pibubu/emotion-NSP (no license)

Status: code verified, 3 files readable

[37102] doi:10.1016/j.isci.2023.106617 [paper, data]

Piezo-mediated mechanosensation contributes to stabilizing copulation posture and reproductive success in <i>Drosophila</i> males.

Journal: iScience

Status: code on request, 1 dataset cited

[37103] doi:10.1016/j.isci.2023.106647 [paper, data]

Intrauterine desensitization enables long term survival of human oligodendrocyte progenitor cells without immunosuppression.

Journal: iScience

Status: data only, 1 dataset cited

[37104] doi:10.1016/j.xcrm.2023.101008 [paper, repository]

Autonomous optimization of neuroprosthetic stimulation parameters that drive the motor cortex and spinal cord outputs in rats and monkeys.

Journal: Cell reports. Medicine

Authors' code: mbonizzato/OptimizeNeurostim (BSD-3-Clause)

Status: code verified, 7 files readable, 2 matches

[37105] doi:10.1038/s41598-023-30864-w [paper, repository]

Removing artefacts and periodically retraining improve performance of neural network-based seizure prediction models.

Journal: Scientific reports

Authors' code: fabioacl/Seizure-Prediction---Artifact-Removal-and-Chronological-Training (no license)

Status: code verified, 9 files readable, 8 matches

[37106] doi:10.1038/s41598-023-32449-z [paper, data]

Exploring relationships between autistic traits and body temperature, circadian rhythms, and age.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37107] doi:10.1038/s41598-023-32896-8 [paper, repository]

Disrupted chromatin architecture in olfactory sensory neurons: looking for the link from COVID-19 infection to anosmia.

Journal: Scientific reports

Authors' code: ZhenWahTan/chromasep (MIT), ZhenWahTan/chromatin-localunitanalysis (no license)

Status: code verified, 29 files readable, 3 matches

[37108] doi:10.1038/s41598-023-32903-y [paper, repository]

Stereology neuron counts correlate with deep learning estimates in the human hippocampal subregions.

Journal: Scientific reports

Authors' code: AugustinackLab/NeuronNumberEstimates (no license)

Status: code verified, 1 file readable

[37109] doi:10.1073/pnas.2222084120 [paper, data]

Tumor progression is independent of tumor-associated macrophages in cell lineage-based mouse models of glioblastoma.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37110] doi:10.1093/braincomms/fcad119 [paper, data]

Diverging patterns of plasticity in the nucleus basalis of Meynert in early- and late-onset blindness.

Journal: Brain communications

Status: data only, 1 dataset cited

[37111] doi:10.1093/pnasnexus/pgad065 [paper, data]

Control of contextual memory through interneuronal α5-GABA_A receptors.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[37112] doi:10.1111/cns.14214 [paper]

Association of dysphagia with altered brain glucose metabolism in Parkinson's disease.

Journal: CNS neuroscience & therapeutics

Status: code on request

[37113] doi:10.1162/nol_a_00092 [paper, repository]

Sources of Heterogeneity in Functional Connectivity During English Word Processing in Bilingual and Monolingual Children.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF uv3t6 (no license)

Status: code verified, 1 file readable, 1 match

[37114] doi:10.1162/nol_a_00094 [paper, repository]

Understanding the Effects of Constraint and Predictability in ERP.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF fndk5 (no license), bnicenboim/eeguana (other)

Status: code verified, 116 files readable, 6 matches

[37115] doi:10.1162/nol_a_00095 [paper, data]

Independency of Coding for Affective Similarities and for Word Co-occurrences in Temporal Perisylvian Neocortex.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[37116] doi:10.1162/nol_a_00097 [paper, data]

Brain Areas Critical for Picture Naming: A Systematic Review and Meta-Analysis of Lesion-Symptom Mapping Studies.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[37117] doi:10.1162/nol_a_00099 [paper, repository]

Phonological and Semantic Specialization in 9- to 10-Year-Old Children During Auditory Word Processing.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: wangjinvandy/PhonSem_Specialization_9_10 (no license)

Status: code verified, 23 files readable, 2 matches

[37118] doi:10.1186/s12859-023-05278-0 [paper, data]

Single-nucleus gene and gene set expression-based similarity network fusion identifies autism molecular subtypes.

Journal: BMC bioinformatics

Status: code on request, 6 datasets cited

[37119] doi:10.1261/rna.079552.122 [paper, repository]

Dynamically regulated transcription factors are encoded by highly unstable mRNAs in the &lt;i&gt;Drosophila&lt;/i&gt; larval brain.

Journal: RNA (New York, N.Y.)

Authors' code: Zenodo 7699832 (CC-BY-4.0)

Status: code verified, 48 files readable, 16 matches

[37120] doi:10.1371/journal.pone.0284271 [paper, data]

Effect of frequency and rhythmicity on flicker light-induced hallucinatory phenomena.

Journal: PloS one

Status: data only, 1 dataset cited

[37121] doi:10.15252/embr.202255837 [paper, data]

Dedifferentiation-derived neural stem cells exhibit perturbed temporal progression.

Journal: EMBO reports

Status: data only, 1 dataset cited

[37122] doi:10.26508/lsa.202201631 [paper, data]

New botulinum neurotoxin constructs for treatment of chronic pain.

Journal: Life science alliance

Status: data only, 1 dataset cited

[37123] doi:10.3389/fneur.2023.1150670 [paper]

Variables associated with cortical motor mapping thresholds: A retrospective data review with a unique case of interlimb motor facilitation.

Journal: Frontiers in neurology

Status: code on request

[37124] doi:10.3389/fnins.2023.1112199 [paper, repository]

In-vivo characterization of macro- and microstructural injury of the subventricular zone in relapsing-remitting and progressive multiple sclerosis.

Journal: Frontiers in neuroscience

Authors' code: ekaden/smt (BSD-2-Clause)

Status: code verified, 41 files readable, 3 matches

[37125] doi:10.3389/fnins.2023.1118910 [paper, repository]

Individual alpha frequency appears unrelated to the latency of early visual responses.

Journal: Frontiers in neuroscience

Authors' code: OSF 5egkp (no license)

Status: code verified, 2 files readable, 4 matches

[37126] doi:10.3389/fonc.2023.1129627 [paper, repository]

Clinically relevant glioblastoma patient-derived xenograft models to guide drug development and identify molecular signatures.

Journal: Frontiers in oncology

Authors' code: broadinstitute/gatk (Apache-2.0)

Status: code verified, 2,000 files readable

[37127] doi:10.3390/diagnostics13081387 [paper, data]

Prognosis Prediction in COVID-19 Patients through Deep Feature Space Reasoning.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[37128] doi:10.3390/ijms24087087 [paper, data]

Adhesion to the Brain Endothelium Selects Breast Cancer Cells with Brain Metastasis Potential.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[37129] doi:10.3390/s23083889 [paper, data]

EEG Signal Complexity Measurements to Enhance BCI-Based Stroke Patients' Rehabilitation.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[37130] doi:10.7554/elife.83012 [paper, data]

Firing patterns of ventral hippocampal neurons predict the exploration of anxiogenic locations.

Journal: eLife

Status: data only, 1 dataset cited

[37131] doi:10.7554/elife.84382 [paper, data]

Axon guidance genes modulate neurotoxicity of ALS-associated UBQLN2.

Journal: eLife

Status: data only, 1 dataset cited

[37132] doi:10.7554/elife.84853 [paper, repository]

Retinal microvascular and neuronal pathologies probed in vivo by adaptive optical two-photon fluorescence microscopy.

Journal: eLife

Authors' code: kevjcao/multielectrode-array (MIT)

Status: code verified, 12 files readable

[37133] doi:10.7717/peerj-cs.1318 [paper, repository]

Augmenting healthy brain magnetic resonance images using generative adversarial networks.

Journal: PeerJ. Computer science

Authors' code: saraalrumih/Brain_tumor_augmentation_and_classification (no license)

Status: code verified, 3 files readable

Monday, 10 April 2023 (25 papers)

[37134] doi:10.1007/s12021-023-09630-w [paper, repository]

A Method for In-Vivo Mapping of Axonal Diameter Distributions in the Human Brain Using Diffusion-Based Axonal Spectrum Imaging (AxSI).

Journal: Neuroinformatics

Authors' code: HilaGast/AxSI (MIT)

Status: code verified, 36 files readable

[37135] doi:10.1007/s44174-023-00078-9 [paper, data]

A Novel Approach Utilizing Machine Learning for the Early Diagnosis of Alzheimer's Disease.

Journal: Biomedical materials & devices (New York, N.Y.)

Status: data only, 1 dataset cited

[37136] doi:10.1016/j.gendis.2023.02.051 [paper, repository]

E674Q (Shanghai <i>APP</i> mutant), a novel amyloid precursor protein mutation, in familial late-onset Alzheimer's disease.

Journal: Genes & diseases

Authors' code: propka.org (no license)

Status: code verified

[37137] doi:10.1016/j.isci.2023.106655 [paper]

Seizure-induced neutrophil adhesion in brain capillaries leads to a decrease in postictal cerebral blood flow.

Journal: iScience

Status: code on request

[37138] doi:10.1038/s41398-023-02413-6 [paper, repository]

Effect of schizophrenia common variants on infant brain volumes: cross-sectional study in 207 term neonates in developing Human Connectome Project.

Journal: Translational psychiatry

Authors' code: MIRTK/DrawEM (Apache-2.0), lehai-ml/nimagen (MIT)

Status: code verified, 86 files readable, 5 matches

[37139] doi:10.1038/s41467-023-37698-0 [paper, repository]

Type I interferon shapes brain distribution and tropism of tick-borne flavivirus.

Journal: Nature communications

Authors' code: ERosendal/LGTV_WT_Ifnar_10x (no license)

Status: empty repository, 1 file readable

[37140] doi:10.1038/s41467-023-37798-x [paper, data]

Tenascin C⁺ papillary fibroblasts facilitate neuro-immune interaction in a mouse model of psoriasis.

Journal: Nature communications

Status: data only, 1 dataset cited

[37141] doi:10.1038/s41531-023-00498-w [paper, repository]

Temporal and spatial variability of dynamic microstate brain network in early Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: ChunguangChu/Spatiotemporal-variability-analysis-based-on-EEG-microstate-network (no license)

Status: code verified

[37142] doi:10.1038/s41598-023-32521-8 [paper, data]

Altered brain structural and functional connectivity in cannabis users.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37143] doi:10.1038/s41598-023-32980-z [paper, data]

Bilateral increase in MEG planar gradients prior to saccade onset.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37144] doi:10.1038/s42003-023-04741-1 [paper, repository]

Topography of associations between cardiovascular risk factors and myelin loss in the ageing human brain.

Journal: Communications biology

Authors' code: otrofimo/brainlaus_cvrf_wm (no license)

Status: code verified, 2 files readable, 4 matches

[37145] doi:10.1073/pnas.2222069120 [paper, repository]

Heterogeneity of depression across the socioeconomic spectrum.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF rx9p8 (no license)

Status: code verified, 1 file readable

[37146] doi:10.1111/cns.14204 [paper, repository]

Spike-and-wave discharges of absence seizures in a sleep waves-constrained corticothalamic model.

Journal: CNS neuroscience & therapeutics

Authors' code: Zenodo 7724411 (other-open), Zenodo 7724443 (other-open), dervinism/thalamocortical1 (no license), dervinism/thalamocortical2 (GPL-3.0)

Status: code verified, 1,879 files readable, 7 matches

[37147] doi:10.1172/jci.insight.154925 [paper, data]

l-Type amino acid transporter 1 in hypothalamic neurons in mice maintains energy and bone homeostasis.

Journal: JCI insight

Status: data only, 1 dataset cited

[37148] doi:10.1186/s13195-023-01216-7 [paper, repository]

Distinct CSF biomarker-associated DNA methylation in Alzheimer's disease and cognitively normal subjects.

Journal: Alzheimer's research & therapy

Authors' code: transbioinfolab/ad-meta-analysis-blood (no license), TransBioInfoLab/AD-ATN-biomarkers-and-DNAm (no license)

Status: code verified, 59 files readable, 11 matches

[37149] doi:10.1186/s41747-023-00330-3 [paper, repository]

Evaluation of techniques to improve a deep learning algorithm for the automatic detection of intracranial haemorrhage on CT head imaging.

Journal: European radiology experimental

Authors' code: melissa-yeo/CT-haemorrhage-classification (no license)

Status: code verified, 13 files readable, 6 matches

[37150] doi:10.1371/journal.pcbi.1011019 [paper, repository]

Diverse role of NMDA receptors for dendritic integration of neural dynamics.

Journal: PLoS computational biology

Authors' code: jiankliu/Dendritic-NMDA (no license)

Status: code verified, 1 file readable

[37151] doi:10.1523/eneuro.0242-22.2023 [paper, repository]

The Genetic Architectures of Functional and Structural Connectivity Properties within Cerebral Resting-State Networks.

Journal: eNeuro

Authors' code: josefin-werme/LAVA (no license), dutchconnectomelab.nl/cato (no license), fuma.ctglab.nl (no license), ctg.cncr.nl/software/magma (no license), bulik/ldsc (GPL-3.0), prsice.info (no license), GenomicSEM/GenomicSEM (GPL-3.0), cog-genomics.org/plink (no license), gabraham/flashpca (GPL-3.0)

Status: code verified, 130 files readable, 3 matches

[37152] doi:10.1523/jneurosci.0837-22.2023 [paper, data]

Development of BOLD Response to Motion in Human Infants.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 2 datasets cited

[37153] doi:10.3389/fbioe.2023.1143304 [paper, data]

Poro-viscoelastic material parameter identification of brain tissue-mimicking hydrogels.

Journal: Frontiers in bioengineering and biotechnology

Status: data only, 3 datasets cited

[37154] doi:10.3389/fphys.2023.1167174 [paper, data]

Perception and kairomonal response of the coccinellid predator (<i>Harmonia axyridis</i>) to the fall armyworm (<i>Spodoptera frugiperda</i>) sex pheromone.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[37155] doi:10.3390/bioengineering10040461 [paper, data]

Epileptic Tissue Localization through Skewness-Based Functional Connectivity in the High-Frequency Band of Intracranial EEG.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 3 datasets cited

[37156] doi:10.3390/biology12040575 [paper, repository]

Electrostatic Complementarities of Glioblastoma-Resident T-Cell Receptors and Cancer Testis Antigens Linked to Poor Outcomes and High Levels of Sphingosine Kinase-2 Expression.

Journal: Biology

Authors' code: bchobrut-USF/blanck_group (no license), hub.docker.com/r/bchobrut (no license), kcios/2021 (no license)

Status: code verified, 20 files readable

[37157] doi:10.3390/life13040976 [paper, data]

TranSegNet: Hybrid CNN-Vision Transformers Encoder for Retina Segmentation of Optical Coherence Tomography.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[37158] doi:10.3390/v15040942 [paper, data]

Impact of Borna Disease Virus Infection on the Transcriptome of Differentiated Neuronal Cells and Its Modulation by Antiviral Treatment.

Journal: Viruses

Status: data only, 1 dataset cited

Sunday, 9 April 2023 (2 papers)

[37159] doi:10.1016/j.envint.2023.107921 [paper, data]

Prenatal exposure to air pollution is associated with structural changes in the neonatal brain.

Journal: Environment international

Status: data only, 1 dataset cited

[37160] doi:10.3390/toxics11040357 [paper, data]

A Realistic Mixture of Persistent Organic Pollutants Affects Zebrafish Development, Behavior, and Specifically Eye Formation by Inhibiting the Condensin I Complex.

Journal: Toxics

Status: data only, 1 dataset cited

Saturday, 8 April 2023 (15 papers)

[37161] doi:10.1007/s00429-023-02637-8 [paper, repository]

Navigation and the efficiency of spatial coding: insights from closed-loop simulations.

Journal: Brain structure & function

Authors' code: sencheng/CoBeL-spike (GPL-3.0), Farama-Foundation/Minigrid (Apache-2.0)

Status: code verified, 140 files readable, 1 match

[37162] doi:10.1016/j.bbi.2023.04.001 [paper, data]

Microglial phagocytosis mediates long-term restructuring of spinal GABAergic circuits following early life injury.

Journal: Brain, behavior, and immunity

Status: data only, 1 dataset cited

[37163] doi:10.1016/j.isci.2023.106608 [paper]

Parvalbumin as a neurochemical marker of the primate optic radiation.

Journal: iScience

Status: code on request

[37164] doi:10.1016/j.isci.2023.106612 [paper, data]

Octopamine neurons mediate reward signals in social learning in an insect.

Journal: iScience

Status: code on request, 1 dataset cited

[37165] doi:10.1016/j.isci.2023.106625 [paper]

Rabies virus-based labeling of layer 6 corticothalamic neurons for two-photon imaging <i>in vivo</i>.

Journal: iScience

Status: code on request

[37166] doi:10.1016/j.jbc.2023.104693 [paper, data]

Short-term CaMKII inhibition with tatCN19o does not erase pre-formed memory in mice and is neuroprotective in pigs.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[37167] doi:10.1038/s41398-023-02418-1 [paper, repository]

Neurotransmission-related gene expression in the frontal pole is altered in subjects with bipolar disorder and schizophrenia.

Journal: Translational psychiatry

Authors' code: hagenaue/Adriana_FrontalPole (no license), hagenaue/FrontalPole_Microarray (no license)

Status: code verified, 46 files readable, 10 matches

[37168] doi:10.1038/s41420-023-01416-y [paper, data]

KLF4 transcription factor in tumorigenesis.

Journal: Cell death discovery

Status: data only, 2 datasets cited

[37169] doi:10.1038/s41467-023-37581-y [paper]

A neuromorphic bionic eye with filter-free color vision using hemispherical perovskite nanowire array retina.

Journal: Nature communications

Status: code on request

[37170] doi:10.1038/s41467-023-37704-5 [paper, repository]

Coregistration of heading to visual cues in retrosplenial cortex.

Journal: Nature communications

Authors' code: ucsb-goard-lab/Two-photon-calcium-post-processing (no license), ucsb-goard-lab/2P-Derotation (no license), ucsb-goard-lab/Neurotar-HD-Experiments (no license)

Status: code verified, 84 files readable, 10 matches

[37171] doi:10.1038/s41597-023-02038-w [paper, repository]

The Queensland Twin Adolescent Brain Project, a longitudinal study of adolescent brain development.

Journal: Scientific data

Authors' code: QTAB-STUDY/twin-data-models (CC0-1.0), QTAB-STUDY/pre-processing (no license), peerherholz/bidsonym (BSD-3-Clause), QTAB-STUDY/dicom-to-bids (no license), Zenodo 7430429 (CC-BY-4.0)

Status: code verified, 45 files readable, 20 matches

[37172] doi:10.1038/s41598-023-32379-w [paper, data]

Electrophysiological, emotional and behavioural responses of female targets of sexual objectification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37173] doi:10.1186/s40478-023-01557-2 [paper, data]

IGFBP2 promotes proliferation and cell migration through STAT3 signaling in Sonic hedgehog medulloblastoma.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[37174] doi:10.3390/cells12081111 [paper, data]

Partial Inhibition of Complex I Restores Mitochondrial Morphology and Mitochondria-ER Communication in Hippocampus of APP/PS1 Mice.

Journal: Cells

Status: data only, 1 dataset cited

[37175] doi:10.3390/microorganisms11040975 [paper, data]

Maternal Psychosocial Stress Is Associated with Reduced Diversity in the Early Infant Gut Microbiome.

Journal: Microorganisms

Status: data only, 1 dataset cited

Friday, 7 April 2023 (18 papers, 9 on this page)

[37176] doi:10.1007/s10519-023-10141-2 [paper, repository]

Heritability Estimation of Cognitive Phenotypes in the ABCD Study&lt;sup&gt;®&lt;/sup&gt; Using Mixed Models.

Journal: Behavior genetics

Authors' code: cmig-research-group/cmig_tools (other), dmysmith/behav-genet-2023 (no license)

Status: code verified, 271 files readable, 9 matches

[37177] doi:10.1007/s10571-023-01344-6 [paper, data]

The Use of Stem Cells as a Potential Treatment Method for Selected Neurodegenerative Diseases: Review.

Journal: Cellular and molecular neurobiology

Status: data only, 4 datasets cited

[37178] doi:10.1007/s11571-023-09955-x [paper, data]

Alpha band modulation caused by selective attention to music enables EEG classification.

Journal: Cognitive neurodynamics

Status: data only, 1 dataset cited

[37179] doi:10.1016/j.dib.2023.109122 [paper, repository]

Image data and computational grids for computing brain shift and solving the electrocorticography forward problem.

Journal: Data in brief

Authors' code: Zenodo 7687631 (CC-BY-4.0), explicitsim/explicitsim (no license)

Status: code verified, 41 files readable, 2 matches

[37180] doi:10.1016/j.isci.2023.106589 [paper]

TMS-EEG and resting-state EEG applied to altered states of consciousness: oscillations, complexity, and phenomenology.

Journal: iScience

Status: code on request

[37181] doi:10.1016/j.isci.2023.106604 [paper, data]

SARS-CoV-2 awakens ancient retroviral genes and the expression of proinflammatory HERV-W envelope protein in COVID-19 patients.

Journal: iScience

Status: data only, 6 datasets cited

[37182] doi:10.1016/j.isci.2023.106607 [paper, data]

Taste coding of heavy metal ion-induced avoidance in <i>Drosophila</i>.

Journal: iScience

Status: data only, 1 dataset cited

[37183] doi:10.1038/s41598-023-32599-0 [paper, data]

Disruptions of default mode network and precuneus connectivity associated with cognitive dysfunctions in tinnitus.

Journal: Scientific reports

Status: data only, 2 datasets cited

[37184] doi:10.1038/s41598-023-32985-8 [paper]

The phase of plasticity-induced neurochemical changes of high-frequency repetitive transcranial magnetic stimulation are different from visual perceptual learning.

Journal: Scientific reports

Status: code on request

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