Every paper, by date: page 167

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 167 of 200: 7 April 2023 to 29 March 2023.

Friday, 7 April 2023 (18 papers, 9 on this page)

[37185] doi:10.1177/0271678x231168687 [paper]

An automatic analysis framework for FDOPA PET neuroimaging.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: code on request

[37186] doi:10.1177/09567976221145316 [paper, repository]

Lonely Individuals Process the World in Idiosyncratic Ways.

Journal: Psychological science

Authors' code: Zenodo 7105933 (CC-BY-4.0)

Status: code verified, 1 file readable

[37187] doi:10.1177/13591053231166263 [paper, data]

Uncovering the social determinants of brain injury rehabilitation.

Journal: Journal of health psychology

Status: data only, 1 dataset cited

[37188] doi:10.1186/s12935-023-02912-y [paper, data]

Ancient ubiquitous protein 1 (AUP1) is a prognostic biomarker connected with TP53 mutation and the inflamed microenvironments in glioma.

Journal: Cancer cell international

Status: data only, 5 datasets cited

[37189] doi:10.1523/jneurosci.1042-22.2023 [paper, repository]

Poorer White Matter Microstructure Predicts Slower and More Variable Reaction Time Performance: Evidence for a Neural Noise Hypothesis in a Large Lifespan Cohort.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF nkjdt (no license)

Status: code verified, 1 file readable

[37190] doi:10.1523/jneurosci.2178-22.2023 [paper, data]

The Self-Concept Is Represented in the Medial Prefrontal Cortex in Terms of Self-Importance.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[37191] doi:10.2147/ijn.s386240 [paper, repository]

Alterations of Gut-Derived Melatonin in Neurobehavioral Impairments Caused by Zinc Oxide Nanoparticles.

Journal: International journal of nanomedicine

Authors' code: tanghaibao/Goatools (BSD-2-Clause)

Status: code verified, 136 files readable, 5 matches

[37192] doi:10.3390/brainsci13040637 [paper, data]

Neural Correlates of Voice Learning with Distinctive and Non-Distinctive Faces.

Journal: Brain sciences

Status: data only, 1 dataset cited

[37193] doi:10.3390/ijms24086913 [paper, data]

Short-Term Exposure to Benzo(a)Pyrene Causes Disruption of GnRH Network in Zebrafish Embryos.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 6 April 2023 (30 papers)

[37194] doi:10.1016/j.isci.2023.106575 [paper, repository]

Hierarchical overlapping modular structure in the human cerebral cortex improves individual identification.

Journal: iScience

Authors' code: fanyongchen/Hierarchal-overlapped-modular-structure (no license), fanyongchen/Hierarchical-overlapping-modular-structure (no license)

Status: code verified, 4 files readable

[37195] doi:10.1016/j.neuroimage.2023.120095 [paper, data]

Relationships between neurotransmitter receptor densities and expression levels of their corresponding genes in the human hippocampus.

Journal: NeuroImage

Status: data only, 1 dataset cited

[37196] doi:10.1021/acs.biochem.3c00100 [paper, data]

Reconstituting Spore Cortex Peptidoglycan Biosynthesis Reveals a Deacetylase That Catalyzes Transamidation.

Journal: Biochemistry

Status: data only, 4 datasets cited

[37197] doi:10.1038/s41368-023-00222-7 [paper, data]

The Tip60/Ep400 chromatin remodeling complex impacts basic cellular functions in cranial neural crest-derived tissue during early orofacial development.

Journal: International journal of oral science

Status: data only, 1 dataset cited

[37198] doi:10.1038/s41467-023-36795-4 [paper, repository]

Distributed processing for value-based choice by prelimbic circuits targeting anterior-posterior dorsal striatal subregions in male mice.

Journal: Nature communications

Authors' code: sanworks/Bpod (GPL-3.0), jinghaolu/min1pipe (GPL-3.0), Zenodo 3568314 (no license), Fuccillo-Lab (no license)

Status: code verified, 353 files readable, 7 matches

[37199] doi:10.1038/s41467-023-37454-4 [paper, repository]

Glucocerebrosidase is imported into mitochondria and preserves complex I integrity and energy metabolism.

Journal: Nature communications

Authors' code: Zenodo 6475864 (other-open), agdeleidi/mborganoids (no license)

Status: code verified, 2 files readable

[37200] doi:10.1038/s41467-023-37623-5 [paper]

A two-dimensional mid-infrared optoelectronic retina enabling simultaneous perception and encoding.

Journal: Nature communications

Status: code on request

[37201] doi:10.1038/s41531-023-00496-y [paper, repository]

Exploring the genetic and genomic connection underlying neurodegeneration with brain iron accumulation and the risk for Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: neurogenetics/NBIA_PD (no license)

Status: empty repository, 1 file readable

[37202] doi:10.1038/s43856-023-00269-x [paper, repository]

Deep learning-based polygenic risk analysis for Alzheimer's disease prediction.

Journal: Communications medicine

Authors' code: xzhouai/NNP (GPL-3.0), Zenodo 7566919 (other-open)

Status: code verified, 6 files readable, 1 match

[37203] doi:10.1073/pnas.2211996120 [paper, data]

Circadian regulation of hippocampal function is disrupted with corticosteroid treatment.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37204] doi:10.1073/pnas.2216698120 [paper, repository]

NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: XWangLabTHU/NeuronMotif (MIT), codeocean:8395715 (no license), deepsea.princeton.edu/media/code (no license), davek44/Basset (MIT), dropbox.com/s/h1cqokbr8vjj5wc (no license), dropbox.com/s/8g3kc0ai9ir5d15 (no license)

Status: code verified, 218 files readable, 2 matches

[37205] doi:10.1073/pnas.2218142120 [paper, data]

Negative energy balance hinders prosocial helping behavior.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37206] doi:10.1073/pnas.2219693120 [paper, repository]

Noninvasive modulation of human corticostriatal activity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: upsidedownbrain/isaac_analysis (MIT)

Status: code verified, 7 files readable, 4 matches

[37207] doi:10.1093/braincomms/fcad104 [paper, repository]

Eigenvector centrality and its variability over time are promising indicators of alterations in brain function due to early amyloid deposition.

Journal: Brain communications

Authors' code: amwink/bias (GPL-3.0), lipsia-fmri/lipsia (Apache-2.0)

Status: code verified, 414 files readable

[37208] doi:10.1093/braincomms/fcad113 [paper, repository]

Predictive blood biomarkers and brain changes associated with age-related cognitive decline.

Journal: Brain communications

Authors' code: arraytomographyusers/Array_tomography_analysis_tool (no license)

Status: code verified, 15 files readable

[37209] doi:10.1093/pnasnexus/pgad119 [paper, repository]

Preservation of thalamocortical circuitry is essential for good recovery after cardiac arrest.

Journal: PNAS nexus

Authors' code: BrainDynamicsUSYD/braintrak (BSD-2-Clause)

Status: code verified, 92 files readable, 1 match

[37210] doi:10.1186/s12876-023-02753-z [paper, data]

Using machine learning methods to predict 28-day mortality in patients with hepatic encephalopathy.

Journal: BMC gastroenterology

Status: data only, 1 dataset cited

[37211] doi:10.1371/journal.pone.0272688 [paper, repository]

Network analysis of the human structural connectome including the brainstem.

Journal: PloS one

Authors' code: SalmaSalhi7/Structural-Connectome-Project (no license)

Status: code verified, 7 files readable, 5 matches

[37212] doi:10.1371/journal.pone.0282691 [paper, data]

The relationship between musical training and the processing of audiovisual correspondences: Evidence from a reaction time task.

Journal: PloS one

Status: data only, 1 dataset cited

[37213] doi:10.1371/journal.pone.0284033 [paper, data]

"Look straight ahead"-A new test to diagnose spatial neglect by computed tomography.

Journal: PloS one

Status: data only, 1 dataset cited

[37214] doi:10.3389/fmicb.2023.1143648 [paper, repository]

Gut microbiota from sigma-1 receptor knockout mice induces depression-like behaviors and modulates the cAMP/CREB/BDNF signaling pathway.

Journal: Frontiers in microbiology

Authors' code: jstjohn/SeqPrep (MIT), najoshi/sickle (MIT)

Status: code verified, 23 files readable

[37215] doi:10.3389/fncel.2023.1127847 [paper, repository]

NeuroSeg-II: A deep learning approach for generalized neuron segmentation in two-photon Ca²⁺ imaging.

Journal: Frontiers in cellular neuroscience

Authors' code: XZH-James/NeuroSeg2 (no license), codeneuro/neurofinder (no license), soltanianzadeh/stneuronet (Apache-2.0)

Status: code verified, 84 files readable, 1 match

[37216] doi:10.3389/fnimg.2023.1072759 [paper, repository]

Accelerated MRI using intelligent protocolling and subject-specific denoising applied to Alzheimer's disease imaging.

Journal: Frontiers in neuroimaging

Authors' code: imr-framework/amri-ip (no license)

Status: dead link

[37217] doi:10.3389/fnins.2023.1100544 [paper, repository]

The art and science of using quality control to understand and improve fMRI data.

Journal: Frontiers in neuroscience

Authors' code: nimh-sfim/SFIM_Frontiers_Neuroimaging_QC_Project (MIT)

Status: code verified, 17 files readable

[37218] doi:10.3389/fnins.2023.1142383 [paper, repository]

DeepDixon synthetic CT for [^18F]FET PET/MRI attenuation correction of post-surgery glioma patients with metal implants.

Journal: Frontiers in neuroscience

Authors' code: CAAI/DeepMRAC (no license)

Status: code verified, 6 files readable

[37219] doi:10.3389/fnmol.2023.1146525 [paper, data]

Integrating transcriptomics and metabolomics to analyze the mechanism of hypertension-induced hippocampal injury.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[37220] doi:10.3389/fpubh.2023.1063250 [paper, data]

Unraveling astrocyte behavior in the space brain: Radiation response of primary astrocytes.

Journal: Frontiers in public health

Status: data only, 1 dataset cited

[37221] doi:10.3390/s23073763 [paper, repository]

A Novel OpenBCI Framework for EEG-Based Neurophysiological Experiments.

Journal: Sensors (Basel, Switzerland)

Authors' code: openbci-archive/OpenBCI_Python (MIT), UN-GCPDS/BCI-framework (BSD-2-Clause), UN-GCPDS/openbci-stream (BSD-2-Clause)

Status: code verified, 289 files readable, 7 matches

[37222] doi:10.7554/elife.83604 [paper, repository]

The effect of weight loss following 18 months of lifestyle intervention on brain age assessed with resting-state functional connectivity.

Journal: eLife

Authors' code: gidlev/functional_brain_aging (MIT)

Status: code verified, 7 files readable, 5 matches

[37223] doi:10.7554/elife.83627 [paper, repository]

The rostral intralaminar nuclear complex of the thalamus supports striatally mediated action reinforcement.

Journal: eLife

Authors' code: supp:PMC10079292/elife-83627-code1.zip (no license)

Status: code verified, 1 file readable

Wednesday, 5 April 2023 (24 papers)

[37224] doi:10.1002/hbm.26292 [paper, repository]

Probing multiple algorithms to calculate brain age: Examining reliability, relations with demographics, and predictive power.

Journal: Human brain mapping

Authors' code: tobias-kaufmann/brainage (no license), james-cole/brainageR (LGPL-3.0)

Status: code verified, 10 files readable

[37225] doi:10.1007/s00395-022-00973-0 [paper, repository]

Electrophysiological and calcium-handling development during long-term culture of human-induced pluripotent stem cell-derived cardiomyocytes.

Journal: Basic research in cardiology

Authors' code: jordiheijman (no license)

Status: code verified

[37226] doi:10.1007/s12565-023-00715-9 [paper, repository]

Automated three-dimensional major white matter bundle segmentation using diffusion magnetic resonance imaging.

Journal: Anatomical science international

Authors' code: yeatmanlab/AFQ (gnu), vistalab/vistasoft (no license), MIC-DKFZ/TractSeg (Apache-2.0)

Status: code verified, 2,288 files readable, 20 matches

[37227] doi:10.1016/j.dib.2023.109114 [paper, data]

Mechanical characterization data of polyacrylamide hydrogel formulations and 3D printed PLA for application in human head phantoms.

Journal: Data in brief

Status: data only, 6 datasets cited

[37228] doi:10.1038/s41467-023-36889-z [paper, repository]

110 μm thin endo-microscope for deep-brain in vivo observations of neuronal connectivity, activity and blood flow dynamics.

Journal: Nature communications

Authors' code: Zenodo 7524794 (CC-BY-4.0), Zenodo 7524782 (CC-BY-4.0)

Status: code verified, 4 files readable

[37229] doi:10.1038/s41467-023-37262-w [paper]

Hematopoietic stem-cell gene therapy is associated with restored white matter microvascular function in cerebral adrenoleukodystrophy.

Journal: Nature communications

Status: code on request

[37230] doi:10.1038/s41467-023-37339-6 [paper, repository]

Buffering of transcription rate by mRNA half-life is a conserved feature of Rett syndrome models.

Journal: Nature communications

Authors' code: JellisLab/stabilome-rett (no license), Zenodo 7537735 (other-open)

Status: code verified, 16 files readable, 6 matches

[37231] doi:10.1038/s41467-023-37416-w [paper, repository]

Ultrafast light targeting for high-throughput precise control of neuronal networks.

Journal: Nature communications

Authors' code: photonics-VisionInstitute/FLiT (no license)

Status: code verified, 1 file readable

[37232] doi:10.1038/s41598-023-31706-5 [paper]

Evaluation of transorbital sonography measures of optic nerve diameter in the context of global and regional brain volume in multiple sclerosis.

Journal: Scientific reports

Status: code on request

[37233] doi:10.1038/s41598-023-32702-5 [paper]

Aldose reductase inhibition decelerates optic nerve degeneration by alleviating retinal microglia activation.

Journal: Scientific reports

Status: data only

[37234] doi:10.1038/s41598-023-32762-7 [paper]

On quantification and maximization of information transfer in network dynamical systems.

Journal: Scientific reports

Status: code on request

[37235] doi:10.1091/mbc.e22-07-0296 [paper]

Cortical dynein drives centrosome clustering in cells with centrosome amplification.

Journal: Molecular biology of the cell

Status: code on request

[37236] doi:10.1097/cm9.0000000000002297 [paper, data]

Genetic background of idiopathic neurodevelopmental delay patients with significant brain deviation volume.

Journal: Chinese medical journal

Status: data only, 1 dataset cited

[37237] doi:10.1126/sciadv.ade5397 [paper]

GPCR-mediated calcium and cAMP signaling determines psychosocial stress susceptibility and resiliency.

Journal: Science advances

Status: data only

[37238] doi:10.1126/sciadv.adf3471 [paper, repository]

3D reconstruction of the cerebellar germinal layer reveals tunneling connections between developing granule cells.

Journal: Science advances

Authors' code: utraf-pasteur-institute/CellWalker (GPL-3.0), utraf-pasteur-institute/ssSEM-EGL-ML-analysis (GPL-3.0), Zenodo 7575687 (other-open), Zenodo 7575710 (other-open)

Status: code verified, 26 files readable, 9 matches

[37239] doi:10.1126/sciadv.adf6140 [paper, repository]

Does the visual word form area split in bilingual readers? A millimeter-scale 7-T fMRI study.

Journal: Science advances

Authors' code: OSF 96syx (no license), snormanhaignere/nonparametric-ica (no license)

Status: code verified, 31 files readable, 6 matches

[37240] doi:10.1126/scitranslmed.ade1779 [paper, data]

Chemogenetics identifies separate area 25 brain circuits involved in anhedonia and anxiety in marmosets.

Journal: Science translational medicine

Status: data only, 1 dataset cited

[37241] doi:10.1152/jn.00265.2022 [paper, data]

Basal ganglia neurons in healthy and parkinsonian primates generate recurring sequences of spikes.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[37242] doi:10.1152/jn.00530.2021 [paper, data]

Interindividual variability and individual stability of pain- and touch-related neuronal gamma oscillations.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[37243] doi:10.1159/000530451 [paper, data]

Sexual Dimorphism in the Closure of the Hippocampal Postnatal Critical Period of Synaptic Plasticity after Intrauterine Growth Restriction: Link to Oligodendrocyte and Glial Dysregulation.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[37244] doi:10.1186/s12906-023-03935-8 [paper]

Isha yoga practices, vegan diet, and participation in Samyama meditation retreat: impact on the gut microbiome & metabolome - a non-randomized trial.

Journal: BMC complementary medicine and therapies

Status: data only

[37245] doi:10.1186/s44167-023-00017-5 [paper, repository]

Method for Activity Sleep Harmonization (MASH): a novel method for harmonizing data from two wearable devices to estimate 24-h sleep-wake cycles.

Journal: Journal of activity, sedentary and sleep behaviors

Authors' code: jsw70/MASH (no license)

Status: code verified, 19 files readable, 2 matches

[37246] doi:10.3389/fendo.2023.1141085 [paper, repository]

Missed meal boluses and poorer glycemic control impact on neurocognitive function may be associated with white matter integrity in adolescents with type 1 diabetes.

Journal: Frontiers in endocrinology

Authors' code: yeatmanlab/AFQ (gnu)

Status: code verified, 180 files readable, 10 matches

[37247] doi:10.3389/fnins.2023.1148191 [paper, repository]

Multi-cue temporal modeling for skeleton-based sign language recognition.

Journal: Frontiers in neuroscience

Authors' code: open-mmlab/mmpose (Apache-2.0)

Status: code verified, 1,169 files readable, 2 matches

Tuesday, 4 April 2023 (25 papers)

[37248] doi:10.1002/hbm.26286 [paper, repository]

Structural architecture and brain network efficiency link polygenic scores to intelligence.

Journal: Human brain mapping

Authors' code: OSF 2qamu (no license)

Status: code verified, 1 file readable, 6 matches

[37249] doi:10.1016/j.celrep.2023.112344 [paper]

Astrocytes mediate cell non-autonomous correction of aberrant firing in human FXS neurons.

Journal: Cell reports

Status: code on request

[37250] doi:10.1038/s41467-023-37433-9 [paper, repository]

Astrocytic chloride is brain state dependent and modulates inhibitory neurotransmission in mice.

Journal: Nature communications

Authors' code: VUntiet/IPSC-analysis (no license)

Status: code verified, 5 files readable

[37251] doi:10.1038/s41598-023-31751-0 [paper]

Spatiotemporal consistency of neural responses to repeatedly presented video stimuli accounts for population preferences.

Journal: Scientific reports

Status: code on request

[37252] doi:10.1073/pnas.2122481120 [paper, data]

Proactive or reactive? Neural oscillatory insight into the leader-follower dynamics of early infant-caregiver interaction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37253] doi:10.1073/pnas.2221686120 [paper, data]

Mutant β₁-adrenergic receptor improves REM sleep and ameliorates tau accumulation in a mouse model of tauopathy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37254] doi:10.1093/braincomms/fcad105 [paper, data]

Mapping a network for tics in Tourette syndrome using causal lesions and structural alterations.

Journal: Brain communications

Status: code on request, 1 dataset cited

[37255] doi:10.1093/braincomms/fcad110 [paper, data]

Multi-omic integration via similarity network fusion to detect molecular subtypes of ageing.

Journal: Brain communications

Status: data only, 1 dataset cited

[37256] doi:10.1093/braincomms/fcad111 [paper, repository]

Dynamic cortical and tractography atlases of proactive and reactive alpha and high-gamma activities.

Journal: Brain communications

Authors' code: kaz1126/flatten_map_and_tractography (no license)

Status: code verified, 2 files readable

[37257] doi:10.1117/1.nph.10.2.025001 [paper]

Predicting poststroke dyskinesia with resting-state functional connectivity in the motor network.

Journal: Neurophotonics

Status: code on request

[37258] doi:10.1186/s12864-023-09280-x [paper, data]

Differential splicing of neuronal genes in a Trem2*R47H mouse model mimics alterations associated with Alzheimer's disease.

Journal: BMC genomics

Status: data only, 11 datasets cited

[37259] doi:10.1186/s40478-023-01547-4 [paper, data]

Temporal tracking of microglial and monocyte single-cell transcriptomics in lethal flavivirus infection.

Journal: Acta neuropathologica communications

Status: data only, 6 datasets cited

[37260] doi:10.1242/dev.201031 [paper, data]

TOM-1/tomosyn acts with the UNC-6/netrin receptor UNC-5 to inhibit growth cone protrusion in Caenorhabditis elegans.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[37261] doi:10.1371/journal.pcbi.1011005 [paper, repository]

Neural spiking for causal inference and learning.

Journal: PLoS computational biology

Authors' code: benlansdell/rdd (MIT)

Status: code verified, 30 files readable

[37262] doi:10.1371/journal.pone.0283954 [paper, data]

A hydrogel model of the human blood-brain barrier using differentiated stem cells.

Journal: PloS one

Status: data only, 1 dataset cited

[37263] doi:10.3389/fimmu.2023.1154699 [paper, data]

T cell aging and Alzheimer's disease.

Journal: Frontiers in immunology

Status: data only, 3 datasets cited

[37264] doi:10.3389/fnins.2023.1059096 [paper, data]

Comparative analysis of acoustic therapies for tinnitus treatment based on auditory event-related potentials.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37265] doi:10.3389/fnins.2023.1174005 [paper, repository]

Epileptic prediction using spatiotemporal information combined with optimal features strategy on EEG.

Journal: Frontiers in neuroscience

Authors' code: kaggle.com/c/seizure-detection (no license)

Status: dead link

[37266] doi:10.3389/fnsyn.2023.1104736 [paper, repository]

Recording plasticity in neuronal activity in the rodent intrinsic cardiac nervous system using calcium imaging techniques.

Journal: Frontiers in synaptic neuroscience

Authors' code: Joscelin1/Calcium-Imaging-Analysis (no license)

Status: code verified, 12 files readable, 1 match

[37267] doi:10.3390/healthcare11071031 [paper, repository]

Disease Prediction Using Graph Machine Learning Based on Electronic Health Data: A Review of Approaches and Trends.

Journal: Healthcare (Basel, Switzerland)

Authors' code: NYUMedML/GNN_for_EHR (GPL-3.0)

Status: code verified, 10 files readable

[37268] doi:10.3390/ijms24076700 [paper, data]

Up-Regulation of microRNA-424 Causes an Imbalance in AKT Phosphorylation and Impairs Enteric Neural Crest Cell Migration in Hirschsprung Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[37269] doi:10.3390/ijms24076741 [paper, repository]

Local Microtubule and F-Actin Distributions Fully Constrain the Spatial Geometry of <i>Drosophila</i> Sensory Dendritic Arbors.

Journal: International journal of molecular sciences

Authors' code: doi:10.17632/cj69j8bpn8.1 (no license)

Status: code verified

[37270] doi:10.7554/elife.78349 [paper, repository]

Prefrontal PV interneurons facilitate attention and are linked to attentional dysfunction in a mouse model of absence epilepsy.

Journal: eLife

Authors' code: huguenardlab/fiberphotometry (MIT)

Status: code verified, 6 files readable, 2 matches

[37271] doi:10.7554/elife.83530 [paper, repository]

GABA_BR silencing of nerve terminals.

Journal: eLife

Authors' code: taryan2020/imagej (MIT)

Status: empty repository, 2 files readable

[37272] doi:10.7554/elife.83656 [paper, repository]

Columnar neurons support saccadic bar tracking in <i>Drosophila</i>.

Journal: eLife

Authors' code: reiserlab.github.io/modular-led-display (no license), OSF c9n4y (no license)

Status: code verified, 11 files readable, 8 matches

Monday, 3 April 2023 (19 papers)

[37273] doi:10.1016/j.celrep.2023.112331 [paper]

Memory consolidation during sleep involves context reinstatement in humans.

Journal: Cell reports

Status: code on request

[37274] doi:10.1016/j.jbc.2023.104671 [paper, data]

Expression of the primate-specific LINC00473 RNA in mouse neurons promotes excitability and CREB-regulated transcription.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[37275] doi:10.1016/j.neuroimage.2023.120086 [paper, repository]

Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation.

Journal: NeuroImage

Authors' code: SlicerDMRI/DFC (no license), SlicerDMRI/whitematteranalysis (other)

Status: code verified, 140 files readable, 4 matches

[37276] doi:10.1038/s41398-023-02398-2 [paper, repository]

Abnormal global signal topography of self modulates emotion dysregulation in major depressive disorder.

Journal: Translational psychiatry

Authors' code: kaanka5312/GSCORR (no license)

Status: code verified, 4 files readable, 13 matches

[37277] doi:10.1038/s41398-023-02401-w [paper, repository]

Parsing brain-behavior heterogeneity in very preterm born children using integrated similarity networks.

Journal: Translational psychiatry

Authors' code: lailahadaya/preterm-ExecuteSNF.CC (MIT), Zenodo 7051925 (MIT), code-neuro/ptestr (other)

Status: code verified, 26 files readable, 5 matches

[37278] doi:10.1038/s41467-023-37613-7 [paper, repository]

Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity.

Journal: Nature communications

Authors' code: roxana-zeraati/abcTau (BSD-3-Clause), roxana-zeraati/spatial-network (BSD-3-Clause), Zenodo 5949117 (other-open), Zenodo 7625655 (BSD-3-Clause)

Status: code verified, 43 files readable, 14 matches

[37279] doi:10.1038/s41565-023-01359-6 [paper, data]

Ectopic expression of a mechanosensitive channel confers spatiotemporal resolution to ultrasound stimulations of neurons for visual restoration.

Journal: Nature nanotechnology

Status: code on request, 1 dataset cited

[37280] doi:10.1038/s41593-023-01283-x [paper, repository]

Hippocampal spatio-predictive cognitive maps adaptively guide reward generalization.

Journal: Nature neuroscience

Authors' code: tankred-saanum/Cognitive-maps-for-rewards (no license), Zenodo 7486683 (other-open)

Status: code verified, 133 files readable, 14 matches

[37281] doi:10.1172/jci160016 [paper, data]

O-GlcNAc transferase in astrocytes modulates depression-related stress susceptibility through glutamatergic synaptic transmission.

Journal: The Journal of clinical investigation

Status: data only, 4 datasets cited

[37282] doi:10.1172/jci164223 [paper, repository]

Neuron-oligodendrocyte potassium shuttling at nodes of Ranvier protects against inflammatory demyelination.

Journal: The Journal of clinical investigation

Authors' code: acunalabuhd/physiology-macros (no license)

Status: code verified, 1 file readable

[37283] doi:10.1186/s10020-023-00640-7 [paper, data]

miR-34a-5p as molecular hub of pathomechanisms in Huntington's disease.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 6 datasets cited

[37284] doi:10.1371/journal.pbio.3002070 [paper, repository]

BDNF signaling in correlation-dependent structural plasticity in the developing visual system.

Journal: PLoS biology

Authors' code: figshare 160870 (CC-BY-4.0), sites.google.com/site/pierrickcoupe (no license), ekutsarova/Dynamic-arbor-morphology-analysis (no license)

Status: code verified, 13 files readable, 3 matches

[37285] doi:10.1371/journal.pcbi.1010983 [paper, repository]

Uncovering the organization of neural circuits with Generalized Phase Locking Analysis.

Journal: PLoS computational biology

Authors' code: shervinsafavi/gpla (no license)

Status: code verified, 197 files readable, 22 matches

[37286] doi:10.1371/journal.pcbi.1011024 [paper, repository]

The contribution of the basal ganglia and cerebellum to motor learning: A neuro-computational approach.

Journal: PLoS computational biology

Authors' code: hamkerlab/Baladron2023-MotorLearning-BG-Cereb (MIT)

Status: code verified, 30 files readable, 2 matches

[37287] doi:10.1590/0074-02760220287 [paper, data]

Anxiety, depression, and memory loss in Chagas disease: a puzzle far beyond neuroinflammation to be unpicked and solved.

Journal: Memorias do Instituto Oswaldo Cruz

Status: data only, 1 dataset cited

[37288] doi:10.3389/fendo.2023.1140886 [paper, repository]

Perinatal exposure to the fungicide ketoconazole alters hypothalamic control of puberty in female rats.

Journal: Frontiers in endocrinology

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[37289] doi:10.3389/fpsyt.2023.1104305 [paper, data]

Hungry for compliments? Ghrelin is not associated with neural responses to social rewards or their pleasantness.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[37290] doi:10.3390/pharmaceutics15041134 [paper, data]

The Current Status, Challenges, and Future Potential of Therapeutic Vaccination in Glioblastoma.

Journal: Pharmaceutics

Status: data only, 7 datasets cited

[37291] doi:10.7554/elife.83727 [paper, repository]

Spatiotemporal tissue maturation of thalamocortical pathways in the human fetal brain.

Journal: eLife

Authors' code: doi:10.12751/g-node.ysgsy1 (no license)

Status: code verified

Saturday, 1 April 2023 (53 papers)

[37292] doi:10.1001/jamapsychiatry.2022.4974 [paper, data]

Role of the Gut-Brain Axis in the Shared Genetic Etiology Between Gastrointestinal Tract Diseases and Psychiatric Disorders: A Genome-Wide Pleiotropic Analysis.

Journal: JAMA psychiatry

Status: data only, 1 dataset cited

[37293] doi:10.1002/cpz1.744 [paper, repository]

Evaluation of Neurotoxicity With Human Pluripotent Stem Cell-Derived Cerebral Organoids.

Journal: Current protocols

Authors' code: Thomas-Parmentier/calcium-imaging-cultured-cells (MIT)

Status: code verified, 2 files readable

[37294] doi:10.1002/dad2.12425 [paper, repository]

White matter microstructural metrics are sensitively associated with clinical staging in Alzheimer's disease.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: VUMC-VMAC/Tractography_Templates (no license)

Status: code verified, 1 file readable

[37295] doi:10.1016/j.gpb.2023.03.005 [paper, repository]

inMTSCCA: An Integrated Multi-task Sparse Canonical Correlation Analysis for Multi-omic Brain Imaging Genetics.

Journal: Genomics, proteomics & bioinformatics

Authors' code: tensors/tensor_toolbox (BSD-2-Clause), ngdc.cncb.ac.cn/biocode/tools (no license)

Status: code verified, 470 files readable

[37296] doi:10.1016/j.isci.2023.106550 [paper]

Interaction between GPR110 (ADGRF1) and tight junction protein occludin implicated in blood-brain barrier permeability.

Journal: iScience

Status: code on request

[37297] doi:10.1016/j.neuroimage.2023.120081 [paper, repository]

Conscientiousness associated with efficiency of the salience/ventral attention network: Replication in three samples using individualized parcellation.

Journal: NeuroImage

Authors' code: OSF zju2s (no license), neuroimageusc.github.io/gpip (no license), thomasyeolab/cbig (MIT)

Status: code verified, 2,005 files readable, 7 matches

[37298] doi:10.1016/j.stemcr.2023.03.006 [paper, repository]

Scalable generation of sensory neurons from human pluripotent stem cells.

Journal: Stem cell reports

Authors' code: cemalley/Deng_methods (GPL-3.0)

Status: code verified, 10 files readable, 5 matches

[37299] doi:10.1038/s41467-023-37400-4 [paper, repository]

Dynamical latent state computation in the male macaque posterior parietal cortex.

Journal: Nature communications

Authors' code: kaushik-l/neuroGAM (no license), kaushik-l/firefly-monkey (no license), deeplabcut/deeplabcut (LGPL-3.0)

Status: code verified, 675 files readable, 16 matches

[37300] doi:10.1038/s41592-023-01838-7 [paper, repository]

Rapid detection of neurons in widefield calcium imaging datasets after training with synthetic data.

Journal: Nature methods

Authors' code: yuanlong-o/Deep_widefield_cal_inferecefor (no license), colab.research.google.com/drive/15tvsyeyge1igpanwkq3flxow52i51mva (no license), yuanlong-o/Deep_widefield_cal_inferece (GPL-2.0)

Status: code verified, 199 files readable, 11 matches

[37301] doi:10.1055/s-0043-1764415 [paper, data]

Time course of hemispheric cerebral volume after decompressive craniectomy in malignant middle cerebral artery stroke.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[37302] doi:10.1093/brain/awac326 [paper, data]

PTPA variants and impaired PP2A activity in early-onset parkinsonism with intellectual disability.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[37303] doi:10.1093/brain/awac356 [paper, repository]

Intact finger representation within primary sensorimotor cortex of musician's dystonia.

Journal: Brain : a journal of neurology

Authors' code: nejaz1/project_dystonia (no license)

Status: code verified, 32 files readable, 1 match

[37304] doi:10.1093/brain/awac376 [paper, repository]

The genomic landscape across 474 surgically accessible epileptogenic human brain lesions.

Journal: Brain : a journal of neurology

Authors' code: LalResearchGroup (no license)

Status: code verified

[37305] doi:10.1093/brain/awac389 [paper, data]

MCAM+ brain endothelial cells contribute to neuroinflammation by recruiting pathogenic CD4+ T lymphocytes.

Journal: Brain : a journal of neurology

Status: data only, 4 datasets cited

[37306] doi:10.1093/cercor/bhac344 [paper, repository]

Physical distance to sensory-motor landmarks predicts language function.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Xiuyi-Wang/Language_Distance_Project (no license)

Status: code verified, 7 files readable, 3 matches

[37307] doi:10.1093/cercor/bhac354 [paper]

Delta-band neural tracking primarily reflects rule-based chunking instead of semantic relatedness between words.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[37308] doi:10.1093/cercor/bhac355 [paper, repository]

A microcircuit model involving parvalbumin, somatostatin, and vasoactive intestinal polypeptide inhibitory interneurons for the modulation of neuronal oscillation during visual processing.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: figshare 20934352 (CC-BY-4.0)

Status: code verified, 10 files readable, 1 match

[37309] doi:10.1093/cercor/bhac373 [paper, repository]

Cortical networks show characteristic recruitment patterns after somatosensory stimulation by pneumatically evoked repetitive hand movements in newborn infants.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: ahtolee/CKC-EEG-Networks (GPL-3.0)

Status: code verified, 5 files readable, 8 matches

[37310] doi:10.1093/cercor/bhac384 [paper, repository]

Sustained upregulation of widespread hippocampal-neocortical coupling following memory encoding.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: markushs/sdcflows (Apache-2.0), thomasyeolab/cbig (MIT), Zenodo 5829424 (other-open), linefolv/hc_cortex_postencoding_coupling_2022 (no license)

Status: code verified, 2,038 files readable, 9 matches

[37311] doi:10.1093/cercor/bhac386 [paper]

Brain-wide connectivity map of mouse thermosensory cortices.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[37312] doi:10.1093/cercor/bhac387 [paper, repository]

Age-related reorganization of functional network architecture in semantic cognition.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: gitlab.gwdg.de/functionalconnectivityaging/mdn_lang_networkanalysis (MIT)

Status: code verified, 27 files readable, 12 matches

[37313] doi:10.1093/cercor/bhac394 [paper, repository]

The cross-domain functional organization of posterior lateral temporal cortex: insights from ALE meta-analyses of 7 cognitive domains spanning 12,000 participants.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Vicki-H/Cross-domain-pLTC (no license), brainmap.org/ale (no license)

Status: code verified, 1 file readable

[37314] doi:10.1093/cercor/bhac410 [paper, repository]

Resting-state functional connectivity in adults with 47,XXX: a 7 Tesla MRI study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 4626841 (other-open), srikash/presurfer (no license)

Status: code verified, 12 files readable

[37315] doi:10.1093/cercor/bhac439 [paper, repository]

Brain recognition of previously learned versus novel temporal sequences: a differential simultaneous processing.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0)

Status: code verified, 168 files readable, 11 matches

[37316] doi:10.1093/cercor/bhac443 [paper, data]

Audiovisual integration in the human brain: a coordinate-based meta-analysis.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[37317] doi:10.1093/cercor/bhac445 [paper, repository]

A stable sensory map emerges from a dynamic equilibrium of neurons with unstable tuning properties.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: doi:10.12751/g-node.trwj8c (no license), Zenodo 5822486 (CC-BY-4.0)

Status: code verified

[37318] doi:10.1093/cercor/bhac453 [paper, repository]

Quantitative MRI maps of human neocortex explored using cell type-specific gene expression analysis.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: BMHLab/AHBAprocessing (no license)

Status: code verified, 386 files readable

[37319] doi:10.1093/hmg/ddac311 [paper, data]

Characterization of the TBR1 interactome: variants associated with neurodevelopmental disorders disrupt novel protein interactions.

Journal: Human molecular genetics

Status: data only, 1 dataset cited

[37320] doi:10.1093/ijnp/pyad006 [paper, repository]

Spectral Changes of EEG Following a 6-Week Low-Dose Oral Ketamine Treatment in Adults With Major Depressive Disorder and Chronic Suicidality.

Journal: The international journal of neuropsychopharmacology

Authors' code: Zenodo 7444821 (MIT), teanijarv/eeg-pyline (MIT)

Status: code verified, 76 files readable, 7 matches

[37321] doi:10.1093/molbev/msad057 [paper, repository]

Interpreting the Evolutionary Echoes of a Protein Complex Essential for Inner-Ear Mechanosensation.

Journal: Molecular biology and evolution

Authors' code: cgmartini.nl/index.php/tools2 (no license)

Status: dead link

[37322] doi:10.1093/rpd/ncad002 [paper, data]

RADIATION DOSE OF THE EYE LENS IN CT EXAMINATIONS OF THE BRAIN IN CLINICAL PRACTICE-THE EFFECT OF RADIOGRAPHER TRAINING TO OPTIMISE GANTRY TILT AND SCAN LENGTH.

Journal: Radiation protection dosimetry

Status: data only, 1 dataset cited

[37323] doi:10.1093/scan/nsad013 [paper, repository]

Invoking self-related and social thoughts impacts online information sharing.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF pxnmw (no license)

Status: code verified, 6 files readable, 9 matches

[37324] doi:10.1096/fj.202201564r [paper, data]

Mitigating the detrimental developmental impact of early fetal alcohol exposure using a maternal methyl donor-enriched diet.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[37325] doi:10.1097/md.0000000000033591 [paper, data]

FAIM2 is correlated with metastasis of medulloblastoma through bioinformatics analysis.

Journal: Medicine

Status: data only, 1 dataset cited

[37326] doi:10.1111/nan.12894 [paper, repository]

DNA methylation-based classification of glioneuronal tumours synergises with histology and radiology to refine accurate molecular stratification.

Journal: Neuropathology and applied neurobiology

Authors' code: tj-stone/svmGNT (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[37327] doi:10.1117/1.nph.10.2.020901 [paper]

Behavioral modeling and neuroimaging of impaired risky decision making in patients with chronic musculoskeletal pain.

Journal: Neurophotonics

Status: code on request

[37328] doi:10.1117/1.nph.10.2.023513 [paper, data]

Wearable, high-density fNIRS and diffuse optical tomography technologies: a perspective.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[37329] doi:10.1117/1.nph.10.2.025006 [paper]

Ten-kilohertz two-photon microscopy imaging of single-cell dendritic activity and hemodynamics <i>in vivo</i>.

Journal: Neurophotonics

Status: code on request

[37330] doi:10.1117/1.nph.10.2.025007 [paper, data]

Short-separation regression incorporated diffuse optical tomography image reconstruction modeling for high-density functional near-infrared spectroscopy.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[37331] doi:10.1117/1.nph.10.2.025009 [paper, repository]

Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed?

Journal: Neurophotonics

Authors' code: OSF 9ynmf (no license)

Status: code verified, 6 files readable, 2 matches

[37332] doi:10.1117/1.nph.10.2.025010 [paper]

Test-retest reliability of functional near-infrared spectroscopy during a finger-tapping and postural task in healthy older adults.

Journal: Neurophotonics

Status: code on request

[37333] doi:10.1117/1.nph.10.2.025011 [paper]

Functional near-infrared spectroscopy neurofeedback of dorsolateral prefrontal cortex enhances human spatial working memory.

Journal: Neurophotonics

Status: code on request

[37334] doi:10.1117/1.nph.10.2.025012 [paper]

Site-specific effects of 800- and 850-nm forehead transcranial photobiomodulation on prefrontal bilateral connectivity and unilateral coupling in young adults.

Journal: Neurophotonics

Status: code on request

[37335] doi:10.1117/1.nph.10.2.025013 [paper]

Using depth-enhanced diffuse correlation spectroscopy and near-infrared spectroscopy to isolate cerebral hemodynamics during transient hypotension.

Journal: Neurophotonics

Status: code on request

[37336] doi:10.1167/jov.23.4.8 [paper, repository]

Low-level tuning biases in higher visual cortex reflect the semantic informativeness of visual features.

Journal: Journal of vision

Authors' code: mmhenderson/image_stats_gabor (no license)

Status: code verified, 101 files readable, 23 matches

[37337] doi:10.1186/s11689-023-09477-x [paper, repository]

No difference in extra-axial cerebrospinal fluid volumes across neurodevelopmental and psychiatric conditions in later childhood and adolescence.

Journal: Journal of neurodevelopmental disorders

Authors' code: peter3200/HBN_Project (MIT)

Status: code verified, 16 files readable, 8 matches

[37338] doi:10.1186/s12979-023-00339-7 [paper, data]

Adiponectin deficiency accelerates brain aging via mitochondria-associated neuroinflammation.

Journal: Immunity & ageing : I & A

Status: data only, 1 dataset cited

[37339] doi:10.14814/phy2.15666 [paper, repository]

Autonomic response to early head-up tilt in patients with severe traumatic brain injury: Analysis from a randomized feasibility trial.

Journal: Physiological reports

Authors' code: Zenodo 5816117 (CC-BY-4.0)

Status: empty repository

[37340] doi:10.3390/biomedicines11041068 [paper]

Suppressive Effects of <i>Lactobacillus</i> on Depression through Regulating the Gut Microbiota and Metabolites in C57BL/6J Mice Induced by Ampicillin.

Journal: Biomedicines

Status: data only

[37341] doi:10.3390/brainsci13040602 [paper, data]

Automated Classification of Brain Tumors from Magnetic Resonance Imaging Using Deep Learning.

Journal: Brain sciences

Status: data only, 2 datasets cited

[37342] doi:10.3390/ijms24076617 [paper, data]

Gut Microbiota Metabolites Differentially Release Gliotransmitters from the Cultured Human Astrocytes: A Preliminary Report.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[37343] doi:10.4103/1673-5374.353494 [paper, data]

DNA hypomethylation promotes learning and memory recovery in a rat model of cerebral ischemia/reperfusion injury.

Journal: Neural regeneration research

Status: data only, 4 datasets cited

[37344] doi:10.4103/1673-5374.354510 [paper, data]

MicroRNAs as potential biomarkers in temporal lobe epilepsy and mesial temporal lobe epilepsy.

Journal: Neural regeneration research

Status: data only, 5 datasets cited

Friday, 31 March 2023 (18 papers)

[37345] doi:10.1002/hbm.26280 [paper, repository]

Rethinking recovery in adolescent concussions: Network-level functional connectivity alterations associated with motor deficits.

Journal: Human brain mapping

Authors' code: KKI-CNIR/CNIR-fmri_preproc_toolbox (no license), BICRC/Crasta_Seed-based-Connectivity (no license)

Status: code verified, 18 files readable, 3 matches

[37346] doi:10.1016/j.isci.2023.106534 [paper]

General anesthetic action profile on the human prefrontal cortex cells through comprehensive single-cell RNA-seq analysis.

Journal: iScience

Status: code on request

[37347] doi:10.1016/j.isci.2023.106542 [paper]

Interhemispheric cortical long-term potentiation in the auditory cortex requires heterosynaptic activation of entorhinal projection.

Journal: iScience

Status: code on request

[37348] doi:10.1038/s41467-023-36808-2 [paper, repository]

Subcortical serotonin 5HT_2c receptor-containing neurons sex-specifically regulate binge-like alcohol consumption, social, and arousal behaviors in mice.

Journal: Nature communications

Authors' code: meghanflanigan/Flanigan_et_al_2023 (no license)

Status: empty repository

[37349] doi:10.1038/s41467-023-37169-6 [paper, data]

Structural insights into the mechanism of leptin receptor activation.

Journal: Nature communications

Status: data only, 1 dataset cited

[37350] doi:10.1038/s41467-023-37562-1 [paper, repository]

Meta-learning biologically plausible plasticity rules with random feedback pathways.

Journal: Nature communications

Authors' code: zalandoresearch/fashion-mnist (MIT), NeuralDynamicsAndComputing/MetaLearning-Plasticity (CC-BY-4.0), Zenodo 7706619 (other-open)

Status: code verified, 26 files readable, 7 matches

[37351] doi:10.1038/s41531-023-00470-8 [paper]

Effects of deep brain stimulation frequency on eye movements and cognitive control.

Journal: NPJ Parkinson's disease

Status: code on request

[37352] doi:10.1038/s41598-023-32150-1 [paper, repository]

Genetic insights into the causal relationship between physical activity and cognitive functioning.

Journal: Scientific reports

Authors' code: LizaDarrous/lhcMR (GPL-3.0)

Status: code verified, 18 files readable, 3 matches

[37353] doi:10.1038/s42003-023-04733-1 [paper, repository]

Bayesian stroke modeling details sex biases in the white matter substrates of aphasia.

Journal: Communications biology

Authors' code: jkernbach/bayesian_stroke (no license)

Status: code verified, 1 file readable, 4 matches

[37354] doi:10.1186/s12877-023-03849-7 [paper, repository]

Functional activity level reported by an informant is an early predictor of Alzheimer's disease.

Journal: BMC geriatrics

Authors' code: parrt/random-forest-importances (MIT), marekkoc/vik_et_al_faq-predictor-of-ad_paper-source-code (no license)

Status: code verified, 22 files readable, 3 matches

[37355] doi:10.1186/s40478-023-01529-6 [paper, data]

Disturbed circadian rhythm and retinal degeneration in a mouse model of Alzheimer's disease.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[37356] doi:10.1186/s42234-023-00108-3 [paper, repository]

Hepatic stellate cell activation markers are regulated by the vagus nerve in systemic inflammation.

Journal: Bioelectronic medicine

Authors' code: ImmunoBioLab/Ahmed2023A (no license)

Status: code verified, 2 files readable

[37357] doi:10.1371/journal.pcbi.1011002 [paper, repository]

Predicting regrowth of low-grade gliomas after radiotherapy.

Journal: PLoS computational biology

Authors' code: supp:PMC10128962/pcbi.1011002.s001.zip (no license)

Status: code verified, 4 files readable

[37358] doi:10.1523/jneurosci.1692-22.2023 [paper, repository]

The 3D Structural Architecture of the Human Hand Area Is Nontopographic.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: acostaj/QSMbox (BSD-3-Clause), pzeidman/BayespRF (GPL-3.0), pengliu1120/bayesian-prf-modelling (no license), cran.r-project.org/package=nlme (no license)

Status: code verified, 225 files readable, 7 matches

[37359] doi:10.3389/fimmu.2023.1157179 [paper, repository]

Application of weighted gene co-expression network and immune infiltration for explorations of key genes in the brain of elderly COVID-19 patients.

Journal: Frontiers in immunology

Authors' code: cibersort.stanford.edu (no license)

Status: code verified

[37360] doi:10.3390/brainsci13040597 [paper]

Effects of Propofol on Cortical Electroencephalograms in the Operation of Glioma-Related Epilepsy.

Journal: Brain sciences

Status: code on request

[37361] doi:10.3390/genes14040842 [paper, repository]

Changes in Loneliness, BDNF, and Biological Aging Predict Trajectories in a Blood-Based Epigenetic Measure of Cortical Aging: A Study of Older Black Americans.

Journal: Genes

Authors' code: danbelsky (no license)

Status: code verified

[37362] doi:10.3390/genes14040853 [paper, repository]

Human Adult Astrocyte Extracellular Vesicle Transcriptomics Study Identifies Specific RNAs Which Are Preferentially Secreted as EV Luminal Cargo.

Journal: Genes

Authors' code: Zenodo 7321805 (other-open), fischuu/pipeline-mirna (no license)

Status: code verified, 18 files readable, 2 matches

Thursday, 30 March 2023 (26 papers)

[37363] doi:10.1002/advs.202205525 [paper, data]

Novel Human Meningioma Organoids Recapitulate the Aggressiveness of the Initiating Cell Subpopulations Identified by ScRNA-Seq.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 4 datasets cited

[37364] doi:10.1016/j.neuroimage.2023.120059 [paper, repository]

Omnipresence of the sensorimotor-association axis topography in the human connectome.

Journal: NeuroImage

Authors' code: zuoxinian/CCS (GPL-2.0), neurodata/discriminability (no license), TingsterX/Reliability_Explorer (AGPL-3.0), glmnet.stanford.edu/index.html (no license)

Status: code verified, 862 files readable, 5 matches

[37365] doi:10.1021/acs.analchem.2c05807 [paper, data]

Untargeted Metabolomic Characterization of Glioblastoma Intra-Tumor Heterogeneity Using OrbiSIMS.

Journal: Analytical chemistry

Status: data only, 2 datasets cited

[37366] doi:10.1038/s41380-023-02022-1 [paper, repository]

Neuronal network activity and connectivity are impaired in a conditional knockout mouse model with PCDH19 mosaic expression.

Journal: Molecular psychiatry

Authors' code: antoniozip/pcdh19_analysis (MIT)

Status: code verified, 2 files readable

[37367] doi:10.1038/s41593-023-01284-w [paper, repository]

Norepinephrine links astrocytic activity to regulation of cortical state.

Journal: Nature neuroscience

Authors' code: Zenodo 7098082 (other-open), michaelreitman/reitmannatjournal2022 (no license)

Status: code verified, 132 files readable, 8 matches

[37368] doi:10.1038/s42003-023-04701-9 [paper, data]

A birefringent spectral demultiplexer enables fast hyper-spectral imaging of protoporphyrin IX during neurosurgery.

Journal: Communications biology

Status: data only, 1 dataset cited

[37369] doi:10.1038/s42003-023-04724-2 [paper]

Tracing development of song memory with fMRI in zebra finches after a second tutoring experience.

Journal: Communications biology

Status: code on request

[37370] doi:10.1093/braincomms/fcad103 [paper, data]

Brain dysconnectivity with heart failure.

Journal: Brain communications

Status: data only, 1 dataset cited

[37371] doi:10.1093/pnasnexus/pgad109 [paper, repository]

Dual leucine zipper kinase is necessary for retinal ganglion cell axonal regeneration in <i>Xenopus laevis</i>.

Journal: PNAS nexus

Authors' code: jbmiesfeld/Atoh7-remote-enhancer (no license)

Status: code verified, 3 files readable

[37372] doi:10.1093/pnasnexus/pgad113 [paper, repository]

Depicting pseudotime-lagged causality across single-cell trajectories for accurate gene-regulatory inference.

Journal: PNAS nexus

Authors' code: Zenodo 7474115 (no license)

Status: code verified

[37373] doi:10.1126/science.abn1366 [paper, data]

Cytosolic antibody receptor TRIM21 is required for effective tau immunotherapy in mouse models.

Journal: Science (New York, N.Y.)

Status: data only, 2 datasets cited

[37374] doi:10.1371/journal.pbio.3002035 [paper, data]

Neural activity induced by sensory stimulation can drive large-scale cerebrospinal fluid flow during wakefulness in humans.

Journal: PLoS biology

Status: data only, 3 datasets cited

[37375] doi:10.1371/journal.pone.0256003 [paper, repository]

The temporal dynamics of the Stroop effect from childhood to young and older adulthood.

Journal: PloS one

Authors' code: EricMenetre/NPL (no license)

Status: code verified, 28 files readable, 2 matches

[37376] doi:10.1371/journal.pone.0278053 [paper, repository]

Quantitative analysis of rabies virus-based synaptic connectivity tracing.

Journal: PloS one

Authors' code: ranczlab (no license), ranczlab/Tran_Van_Minh_et_al_2023 (GPL-3.0)

Status: code verified, 49 files readable, 10 matches

[37377] doi:10.1371/journal.pone.0281332 [paper, data]

Diffusion phase-imaging in anisotropic media using non-linear gradients for diffusion encoding.

Journal: PloS one

Status: data only, 2 datasets cited

[37378] doi:10.1371/journal.pone.0283573 [paper, repository]

A standardized database of Chinese emotional short videos based on age and gender differences.

Journal: PloS one

Authors' code: EEG-Emotion-Recognition-group/A-standardized-database-of-Chineseemotional-short-videos-based-on-age-and-gender-differences (no license)

Status: dead link

[37379] doi:10.1515/med-2023-0675 [paper, data]

miR-30b-5p targeting GRIN2A inhibits hippocampal damage in epilepsy.

Journal: Open medicine (Warsaw, Poland)

Status: data only, 1 dataset cited

[37380] doi:10.3389/fimmu.2023.1114663 [paper, data]

Single-cell analyses reveal the dynamic functions of Itgb2⁺ microglia subclusters at different stages of cerebral ischemia-reperfusion injury in transient middle cerebral occlusion mice model.

Journal: Frontiers in immunology

Status: data only, 5 datasets cited

[37381] doi:10.3389/fnins.2023.1145805 [paper, data]

Combined transcriptomics and proteomics forecast analysis for potential biomarker in the acute phase of temporal lobe epilepsy.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37382] doi:10.3389/fnrgo.2023.1080794 [paper, data]

Investigating the impact of visual perspective in a motor imagery-based brain-robot interaction: A pilot study with healthy participants.

Journal: Frontiers in neuroergonomics

Status: data only, 1 dataset cited

[37383] doi:10.3389/fpsyt.2023.1128808 [paper, repository]

Abnormal focal segments in left uncinate fasciculus in adults with obsessive-compulsive disorder.

Journal: Frontiers in psychiatry

Authors' code: vistalab/vistasoft (no license), yeatmanlab/AFQ (gnu)

Status: code verified, 2,180 files readable, 8 matches

[37384] doi:10.3390/brainsci13040586 [paper, data]

Event-Related Potentials Reveal the Impact of Conflict Strength in a Numerical Stroop Paradigm.

Journal: Brain sciences

Status: data only, 1 dataset cited

[37385] doi:10.3390/e25040589 [paper, data]

Synchrony-Division Neural Multiplexing: An Encoding Model.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

[37386] doi:10.3390/s23073604 [paper, repository]

Binocular Rivalry Impact on Macroblock-Loss Error Concealment for Stereoscopic 3D Video Transmission.

Journal: Sensors (Basel, Switzerland)

Authors' code: figshare 20985676 (CC-BY-4.0), figshare 21027580 (CC-BY-4.0), figshare 20986519 (CC-BY-4.0)

Status: code verified

[37387] doi:10.3390/s23073622 [paper, data]

Comparison of Machine Learning Models for Brain Age Prediction Using Six Imaging Modalities on Middle-Aged and Older Adults.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[37388] doi:10.7554/elife.83970 [paper, repository]

Model-based whole-brain perturbational landscape of neurodegenerative diseases.

Journal: eLife

Authors' code: tinyurl.com/27652jkz (no license)

Status: code verified

Wednesday, 29 March 2023 (36 papers, 20 on this page)

[37389] doi:10.1002/brb3.2839 [paper, repository]

Heritability of human "directed" functional connectome.

Journal: Brain and behavior

Authors' code: lucafaes.net/msgc.html (no license)

Status: code verified

[37390] doi:10.1002/hbm.26283 [paper, repository]

General dimensions of human brain morphometry inferred from genome-wide association data.

Journal: Human brain mapping

Authors' code: annafurtjes.github.io/genetic_networks_project (no license)

Status: code verified

[37391] doi:10.1002/hbm.26284 [paper, repository]

Mapping and decoding cortical engagement during motor imagery, mental arithmetic, and silent word generation using MEG.

Journal: Human brain mapping

Authors' code: vyoussofzadeh/BCI-beta-desynchrony_2021 (GPL-3.0)

Status: code verified, 16 files readable, 1 match

[37392] doi:10.1002/hbm.26291 [paper, repository]

Altered large-scale dynamic connectivity patterns in Alzheimer's disease and mild cognitive impairment patients: A machine learning study.

Journal: Human brain mapping

Authors' code: YongLiuLab (no license)

Status: code verified

[37393] doi:10.1002/hbm.26295 [paper]

Brain-wide network analysis of resting-state neuromagnetic data.

Journal: Human brain mapping

Status: code on request

[37394] doi:10.1016/j.neuroimage.2023.120045 [paper, repository]

Association between sleep slow-wave activity and in-vivo estimates of myelin in healthy young men.

Journal: NeuroImage

Authors' code: Zenodo 6546548 (no license)

Status: dead link

[37395] doi:10.1021/acsomega.3c00696 [paper, repository]

Integrative Genomic Analysis of m6a-SNPs Identifies Potential Functional Variants Associated with Alzheimer's Disease.

Journal: ACS omega

Authors' code: izhbannikov/haploR (no license)

Status: code verified, 14 files readable

[37396] doi:10.1038/s41380-022-01909-9 [paper, repository]

Focal adhesion is associated with lithium response in bipolar disorder: evidence from a network-based multi-omics analysis.

Journal: Molecular psychiatry

Authors' code: vniems/BD-Lithium (GPL-3.0)

Status: code verified, 9 files readable, 3 matches

[37397] doi:10.1038/s41380-023-02016-z [paper, repository]

Cross-sectional and longitudinal neuroanatomical profiles of distinct clinical (adaptive) outcomes in autism.

Journal: Molecular psychiatry

Authors' code: mvlombardo/utils (no license)

Status: code verified, 12 files readable

[37398] doi:10.1038/s41467-023-37220-6 [paper, repository]

Muscle cell-type diversification is driven by bHLH transcription factor expansion and extensive effector gene duplications.

Journal: Nature communications

Authors' code: technau/NemMuscle (no license), doi:10.5281/zendo.7509380 (no license)

Status: code verified, 4 files readable, 2 matches

[37399] doi:10.1038/s41467-023-37248-8 [paper, repository]

Activation of the CA2-ventral CA1 pathway reverses social discrimination dysfunction in Shank3B knockout mice.

Journal: Nature communications

Authors' code: einaraz/SharpWaveRipple (MIT), Zenodo 7592606 (other-open)

Status: code verified, 6 files readable

[37400] doi:10.1038/s41467-023-37330-1 [paper, repository]

White matter disconnection of left multiple demand network is associated with post-lesion deficits in cognitive control.

Journal: Nature communications

Authors' code: dorianps/LESYMAP (Apache-2.0), JiefengJiang/CPMCognitiveControl (no license), Zenodo 7633964 (other-open)

Status: code verified, 44 files readable, 3 matches

[37401] doi:10.1038/s41467-023-37344-9 [paper, repository]

Hypothalamic melanin-concentrating hormone neurons integrate food-motivated appetitive and consummatory processes in rats.

Journal: Nature communications

Authors' code: OSF wmkgj (no license)

Status: code verified, 6 files readable, 4 matches

[37402] doi:10.1038/s41467-023-37463-3 [paper, repository]

Characterizing brain dynamics during ketamine-induced dissociation and subsequent interactions with propofol using human intracranial neurophysiology.

Journal: Nature communications

Authors' code: pelednoam/ieil (no license)

Status: empty repository, 1 file readable

[37403] doi:10.1038/s43856-023-00276-y [paper, repository]

Multimodal deep learning to predict prognosis in adult and pediatric brain tumors.

Journal: Communications medicine

Authors' code: gevaertlab/MultiModalBrainSurvival (no license), Zenodo 7644876 (other-open)

Status: code verified, 48 files readable, 7 matches

[37404] doi:10.1073/pnas.2209917120 [paper, repository]

Structural insights into constitutive activity of 5-HT₆ receptor.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: rcsb.org/pdb/explore (no license)

Status: code verified

[37405] doi:10.1073/pnas.2217744120 [paper, data]

Artificial intelligence velocimetry reveals in vivo flow rates, pressure gradients, and shear stresses in murine perivascular flows.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37406] doi:10.1091/mbc.e22-06-0243 [paper]

The Arp2/3 complex enhances cell migration on elastic substrates.

Journal: Molecular biology of the cell

Status: code on request

[37407] doi:10.1093/braincomms/fcad014 [paper, repository]

Comparing the brain-behaviour relationship in acute and chronic stroke aphasia.

Journal: Brain communications

Authors' code: neurolabusc/nii_preprocess (no license), grigori-yourganov/cross-predict (GPL-3.0)

Status: code verified, 98 files readable, 10 matches

[37408] doi:10.1098/rspb.2023.0407 [paper, repository]

Transcriptional profiling of the response to starvation and fattening reveals differential regulation of autophagy genes in mammals.

Journal: Proceedings. Biological sciences

Authors' code: Shamir-Lab (no license), doi:10.6084/m9.figshare.c.6471256 (no license)

Status: code verified

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