Every paper, by date: page 168

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 168 of 200: 29 March 2023 to 17 March 2023.

Wednesday, 29 March 2023 (36 papers, 16 on this page)

[37409] doi:10.1111/cns.14181 [paper, data]

Temozolomide protects against the progression of glioblastoma via SOX4 downregulation by inhibiting the LINC00470-mediated transcription factor EGR2.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[37410] doi:10.1177/02698811231161582 [paper, repository]

The NK1 antagonist L-733,060 facilitates sequence learning.

Journal: Journal of psychopharmacology (Oxford, England)

Authors' code: NataliaFavila/RL_model_action_sequences (CC0-1.0)

Status: code verified, 8 files readable

[37411] doi:10.1186/s12860-023-00474-5 [paper, data]

Evolutionary relevance of single nucleotide variants within the forebrain exclusive human accelerated enhancer regions.

Journal: BMC molecular and cell biology

Status: data only, 2 datasets cited

[37412] doi:10.1186/s12883-023-03171-0 [paper, repository]

Resting-state functional connectivity in multiple sclerosis patients receiving nabiximols for spasticity.

Journal: BMC neurology

Authors' code: juryxy/juspace (no license)

Status: code verified, 21 files readable

[37413] doi:10.1186/s13041-023-01020-2 [paper, data]

Behavioral phenotype, intestinal microbiome, and brain neuronal activity of male serotonin transporter knockout mice.

Journal: Molecular brain

Status: data only, 1 dataset cited

[37414] doi:10.1186/s13578-023-01017-3 [paper, repository]

H3K27me3-H3K4me1 transition at bivalent promoters instructs lineage specification in development.

Journal: Cell & bioscience

Authors' code: taoliu/MACS (BSD-3-Clause)

Status: code verified, 222 files readable

[37415] doi:10.21037/tlcr-23-107 [paper, data]

Identification of distinct tumor cell patterns with single-cell RNA sequencing integrating primary lung adenocarcinoma and brain metastasis tumor.

Journal: Translational lung cancer research

Status: data only, 1 dataset cited

[37416] doi:10.3389/fimmu.2023.1117310 [paper, data]

LDC7559 inhibits microglial activation and GSDMD-dependent pyroptosis after subarachnoid hemorrhage.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[37417] doi:10.3389/fimmu.2023.1166377 [paper, data]

Deciphering the role of QPCTL in glioma progression and cancer immunotherapy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[37418] doi:10.3389/fneur.2023.1027160 [paper, repository]

Mapping topography and network of brain injury in patients with disorders of consciousness.

Journal: Frontiers in neurology

Authors' code: Mango117/BMedScDOC_2023 (no license)

Status: code verified, 15 files readable

[37419] doi:10.3390/bioengineering10040435 [paper, data]

Uncovering the Correlation between COVID-19 and Neurodegenerative Processes: Toward a New Approach Based on EEG Entropic Analysis.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[37420] doi:10.3390/brainsci13040575 [paper, repository]

EEG Dynamics of Error Processing and Associated Behavioral Adjustments in Preschool Children.

Journal: Brain sciences

Authors' code: mathigatti/Emotiv-Experiments (no license)

Status: code verified, 30 files readable

[37421] doi:10.3390/ijms24076450 [paper, repository]

Determination of Krogh Coefficient for Oxygen Consumption Measurement from Thin Slices of Rodent Cortical Tissue Using a Fick's Law Model of Diffusion.

Journal: International journal of molecular sciences

Authors' code: mathworks.com/matlabcentral/fileexchange (no license)

Status: code found, still to be checked

[37422] doi:10.3390/ijms24076456 [paper, repository]

Progressive Motor and Non-Motor Symptoms in <i>Park7</i> Knockout Zebrafish.

Journal: International journal of molecular sciences

Authors' code: Zenodo 7544764 (CC-BY-4.0)

Status: code verified, 2 files readable

[37423] doi:10.3390/mi14040749 [paper, repository]

A Deep Learning Approach for Predicting Multiple Sclerosis.

Journal: Micromachines

Authors' code: ponceraf2020/Pseudo-code (no license)

Status: empty repository, 1 file readable

[37424] doi:10.7554/elife.85135 [paper, repository]

Integrated transcriptome and proteome analysis reveals posttranscriptional regulation of ribosomal genes in human brain organoids.

Journal: eLife

Authors' code: stephenfloor/tripseq-analysis (GPL-2.0)

Status: code verified, 13 files readable, 2 matches

Tuesday, 28 March 2023 (29 papers)

[37425] doi:10.1007/s11336-023-09910-z [paper, repository]

Longitudinal Modeling of Age-Dependent Latent Traits with Generalized Additive Latent and Mixed Models.

Journal: Psychometrika

Authors' code: LCBC-UiO/galamm (GPL-3.0), LCBC-UiO/galamm-scripts (AGPL-3.0)

Status: code verified, 104 files readable, 23 matches

[37426] doi:10.1007/s12021-023-09626-6 [paper, repository]

A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation.

Journal: Neuroinformatics

Authors' code: figshare 17023931 (CC-BY-4.0), figshare 21621162 (CC-BY-4.0)

Status: code verified, 1 file readable

[37427] doi:10.1016/j.identj.2023.03.002 [paper, data]

Expression Pattern and Value of Brain-Derived Neurotrophic Factor in Periodontitis.

Journal: International dental journal

Status: data only, 1 dataset cited

[37428] doi:10.1016/j.jpsychires.2023.03.033 [paper, data]

Associations between brain gene expression perturbations implicated by COVID-19 and psychiatric disorders.

Journal: Journal of psychiatric research

Status: data only, 1 dataset cited

[37429] doi:10.1038/s41398-023-02388-4 [paper, repository]

Neural valuation of rewards and punishments in posttraumatic stress disorder: a computational approach.

Journal: Translational psychiatry

Authors' code: LevyDecisionNeuroLab/VA_PTB_Analysis-Scripts (no license), LevyDecisionNeuroLab/VA_RA_PTB_imaging_analysis_scripts (no license)

Status: code verified, 124 files readable

[37430] doi:10.1038/s41419-023-05735-x [paper, data]

TREM2 deficiency in microglia accelerates photoreceptor cell death and immune cell infiltration following retinal detachment.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[37431] doi:10.1038/s42003-023-04707-3 [paper]

Global motion processing in infants' visual cortex and the emergence of autism.

Journal: Communications biology

Status: code on request

[37432] doi:10.1038/s42003-023-04712-6 [paper, data]

A custom-made AAV1 variant (AAV1-T593K) enables efficient transduction of Japanese quail neurons in vitro and in vivo.

Journal: Communications biology

Status: data only, 2 datasets cited

[37433] doi:10.1073/pnas.2218245120 [paper, data]

Pattern dynamics and stochasticity of the brain rhythms.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[37434] doi:10.1093/gigascience/giad018 [paper, repository]

The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology.

Journal: GigaScience

Authors' code: lmc2179/bayesian_bootstrap (MIT)

Status: code verified, 10 files readable

[37435] doi:10.1093/oons/kvad005 [paper, data]

Theta oscillations in anterior cingulate cortex and orbitofrontal cortex differentially modulate accuracy and speed in flexible reward learning.

Journal: Oxford open neuroscience

Status: data only, 1 dataset cited

[37436] doi:10.1111/gbb.12846 [paper, repository]

Multi-omics cannot replace sample size in genome-wide association studies.

Journal: Genes, brain, and behavior

Authors' code: OSF g4u9a (no license)

Status: code verified, 4 files readable, 3 matches

[37437] doi:10.1159/000530358 [paper, data]

A Proposed Human Structural Brain Connectivity Matrix in the Center for Morphometric Analysis Harvard-Oxford Atlas Framework: A Historical Perspective and Future Direction for Enhancing the Precision of Human Structural Connectivity with a Novel Neuroanatomical Typology.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[37438] doi:10.1186/s12987-023-00424-5 [paper, data]

The CLDN5 gene at the blood-brain barrier in health and disease.

Journal: Fluids and barriers of the CNS

Status: data only, 3 datasets cited

[37439] doi:10.1242/dmm.049996 [paper, data]

Autism-linked NLGN3 is a key regulator of gonadotropin-releasing hormone deficiency.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[37440] doi:10.1523/jneurosci.1531-22.2023 [paper, repository]

Attractor-Like Dynamics Extracted from Human Electrocorticographic Recordings Underlie Computational Principles of Auditory Bistable Perception.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 7w9qh (no license)

Status: code verified

[37441] doi:10.1523/jneurosci.1734-22.2023 [paper, repository]

<i>Drosophila</i> Tachykininergic Neurons Modulate the Activity of Two Groups of Receptor-Expressing Neurons to Regulate Aggressive Tone.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: iorodeo/bias (Apache-2.0), kristinbranson/FlyTracker (BSD-3-Clause), sourceforge.net/jaaba (no license)

Status: code verified, 312 files readable

[37442] doi:10.1523/jneurosci.2226-22.2023 [paper, repository]

Microglial Cytokines Mediate Plasticity Induced by 10 Hz Repetitive Magnetic Stimulation.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: ZsoltTuri/2023_microglia_10Hz_rMS (no license)

Status: code verified, 832 files readable, 4 matches

[37443] doi:10.15252/emmm.202216805 [paper, repository]

Molecular and cognitive signatures of ageing partially restored through synthetic delivery of IL2 to the brain.

Journal: EMBO molecular medicine

Authors' code: AdrianListon/AAV-IL2 (no license)

Status: code verified, 3 files readable, 6 matches

[37444] doi:10.3389/fnhum.2023.1161156 [paper, repository]

Interhemispheric transfer time and concussion in adolescents: A longitudinal study using response time and event-related potential measures.

Journal: Frontiers in human neuroscience

Authors' code: OSF aqf9v (no license)

Status: code verified, 4 files readable, 4 matches

[37445] doi:10.3389/fnins.2023.1122406 [paper, data]

Vigilance decrement and mind-wandering in sustained attention tasks: Two sides of the same coin?

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37446] doi:10.3390/cancers15072008 [paper, data]

Reticulocalbin 3 Is a Novel Mediator of Glioblastoma Progression.

Journal: Cancers

Status: data only, 1 dataset cited

[37447] doi:10.3390/diagnostics13071282 [paper, repository]

A Foreground Prototype-Based One-Shot Segmentation of Brain Tumors.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: gitfront.io/r/akshat (no license)

Status: code verified

[37448] doi:10.3758/s13415-023-01088-2 [paper, repository]

Aberrant uncertainty processing is linked to psychotic-like experiences, autistic traits, and is reflected in pupil dilation during probabilistic learning.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 6xab2 (no license)

Status: code verified, 15 files readable

[37449] doi:10.7554/elife.81982 [paper, repository]

Oligodendrocyte-mediated myelin plasticity and its role in neural synchronization.

Journal: eLife

Authors' code: pajevic/OMPmodel (GPL-3.0)

Status: code verified, 6 files readable

[37450] doi:10.7554/elife.83739 [paper, repository]

Generative network modeling reveals quantitative definitions of bilateral symmetry exhibited by a whole insect brain connectome.

Journal: eLife

Authors' code: microsoft/graspologic (MIT), neurodata/bilateral-connectome (other), jupyterbook.org (no license), docs.neurodata.io/bilateral-connectome (no license), Zenodo 7733481 (other-open)

Status: code verified, 399 files readable, 4 matches

[37451] doi:10.7554/elife.85521 [paper, repository]

Origin of wiring specificity in an olfactory map revealed by neuron type-specific, time-lapse imaging of dendrite targeting.

Journal: eLife

Authors' code: Qijing-Xie/FlyPN_development (MIT), abcucberkeley/LLSM3DTools (GPL-3.0)

Status: code verified, 764 files readable, 2 matches

[37452] doi:10.7717/peerj-cs.1303 [paper, repository]

Automatic design and optimization of educational space for autistic children based on deep neural network and affordance theory.

Journal: PeerJ. Computer science

Authors' code: tianchi.aliyun.com/specials/promotion (no license), supp:PMC10280554/peerj-cs-09-1303-s001.zip (no license)

Status: code verified, 8 files readable, 4 matches

[37453] doi:10.7717/peerj.15122 [paper, data]

The modulatory effects of gut microbes and metabolites on blood-brain barrier integrity and brain function in sepsis-associated encephalopathy.

Journal: PeerJ

Status: data only, 2 datasets cited

Monday, 27 March 2023 (25 papers)

[37454] doi:10.1002/hbm.26222 [paper]

Development of an objective method to quantify hippocampal dentation.

Journal: Human brain mapping

Status: code on request

[37455] doi:10.1002/hbm.26281 [paper, repository]

Single-value scores of memory-related brain activity reflect dissociable neuropsychological and anatomical signatures of neurocognitive aging.

Journal: Human brain mapping

Authors' code: annirichter/FADE_Neuropsy (GPL-3.0)

Status: code verified, 3 files readable

[37456] doi:10.1007/s00401-023-02561-5 [paper, repository]

Ganglioglioma with adverse clinical outcome and atypical histopathological features were defined by alterations in PTPN11/KRAS/NF1 and other RAS-/MAP-Kinase pathway genes.

Journal: Acta neuropathologica

Authors' code: FAU-DLM/Methylr2py (no license), FAU-DLM/conumee (no license)

Status: code verified, 15 files readable, 2 matches

[37457] doi:10.1016/j.isci.2023.106503 [paper]

Plasticity manifolds and degeneracy govern circadian oscillations of neuronal intrinsic properties in the suprachiasmatic nucleus.

Journal: iScience

Status: code on request

[37458] doi:10.1021/acs.jctc.2c01235 [paper, data]

A Perspective on Explanations of Molecular Prediction Models.

Journal: Journal of chemical theory and computation

Status: data only, 2 datasets cited

[37459] doi:10.1038/s41467-023-37413-z [paper, data]

Structural and functional analysis of human pannexin 2 channel.

Journal: Nature communications

Status: data only, 1 dataset cited

[37460] doi:10.1038/s41531-023-00484-2 [paper]

The small GTPase Rit2 modulates LRRK2 kinase activity, is required for lysosomal function and protects against alpha-synuclein neuropathology.

Journal: NPJ Parkinson's disease

Status: code on request

[37461] doi:10.1038/s41598-023-31602-y [paper, data]

Interhemispheric interplay between the left and right premotor cortex during grasping as assessed by dynamic causal modelling.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37462] doi:10.1038/s42003-023-04692-7 [paper, data]

A neurophysiological perspective on the integration between incidental learning and cognitive control.

Journal: Communications biology

Status: data only, 1 dataset cited

[37463] doi:10.1073/pnas.2211966120 [paper, data]

Re-cognizing the new self: The neurocognitive plasticity of self-processing following facial transplantation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[37464] doi:10.1101/2023.03.27.534329 [paper, data]

Axis convergence in <i>C. elegans</i> embryos

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[37465] doi:10.1117/1.jbo.28.9.094804 [paper]

Enhancing intraoperative tumor delineation with multispectral short-wave infrared fluorescence imaging and machine learning.

Journal: Journal of biomedical optics

Status: code on request

[37466] doi:10.1186/s12868-023-00787-3 [paper, data]

EDDSN-MRT: multiple rodent tracking based on ear detection and dual siamese network for rodent social behavior analysis.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[37467] doi:10.1186/s12880-023-00994-8 [paper, data]

RU-Net: skull stripping in rat brain MR images after ischemic stroke with rat U-Net.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[37468] doi:10.1186/s12951-023-01862-x [paper, data]

Anti-CHAC1 exosomes for nose-to-brain delivery of miR-760-3p in cerebral ischemia/reperfusion injury mice inhibiting neuron ferroptosis.

Journal: Journal of nanobiotechnology

Status: data only, 3 datasets cited

[37469] doi:10.1186/s40478-023-01544-7 [paper, data]

Disrupted myelin lipid metabolism differentiates frontotemporal dementia caused by GRN and C9orf72 gene mutations.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[37470] doi:10.1371/journal.pcbi.1010932 [paper, repository]

Robust deep learning object recognition models rely on low frequency information in natural images.

Journal: PLoS computational biology

Authors' code: lizhe07/blur-net (no license)

Status: code verified, 9 files readable

[37471] doi:10.1371/journal.pgen.1010650 [paper, repository]

Integration of cooperative and opposing molecular programs drives learning-associated behavioral plasticity.

Journal: PLoS genetics

Authors' code: supp:PMC10079226/pgen.1010650.s010.R (no license)

Status: code verified, 1 file readable

[37472] doi:10.1371/journal.pone.0283460 [paper, data]

Synchronization of kinetic and kinematic hand tasks with electrocorticography and cortical stimulation during awake craniotomies.

Journal: PloS one

Status: data only, 2 datasets cited

[37473] doi:10.3389/fnagi.2023.1098510 [paper, data]

Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[37474] doi:10.3389/fneur.2023.1136408 [paper, data]

Effects of post-acute COVID-19 syndrome on the functional brain networks of non-hospitalized individuals.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[37475] doi:10.3389/frai.2023.1062230 [paper, repository]

A tale of two lexica: Investigating computational pressures on word representation with neural networks.

Journal: Frontiers in artificial intelligence

Authors' code: enesavc/lstm-lex (MIT)

Status: code verified, 18 files readable, 8 matches

[37476] doi:10.3390/jcm12072514 [paper, repository]

Median Nerve Stimulation for Treatment of Tics: Randomized, Controlled, Crossover Trial.

Journal: Journal of clinical medicine

Authors' code: blackhershey/mns (no license), OSF 8jtep (no license)

Status: code verified, 2 files readable

[37477] doi:10.3390/nu15071620 [paper, data]

Intestinal Barrier Dysfunction and Microbiota-Gut-Brain Axis: Possible Implications in the Pathogenesis and Treatment of Autism Spectrum Disorder.

Journal: Nutrients

Status: data only, 4 datasets cited

[37478] doi:10.3390/s23073500 [paper, data]

A Hybrid Stacked CNN and Residual Feedback GMDH-LSTM Deep Learning Model for Stroke Prediction Applied on Mobile AI Smart Hospital Platform.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Sunday, 26 March 2023 (3 papers)

[37479] doi:10.1016/j.neuroimage.2023.120056 [paper]

Super-resolution in brain positron emission tomography using a real-time motion capture system.

Journal: NeuroImage

Status: code on request

[37480] doi:10.3390/e25040570 [paper, repository]

Structure and Sequence Aligned Code Summarization with Prefix and Suffix Balanced Strategy.

Journal: Entropy (Basel, Switzerland)

Authors' code: tree-sitter.github.io (no license)

Status: code verified

[37481] doi:10.3390/s23073468 [paper, data]

Simultaneous Sleep Stage and Sleep Disorder Detection from Multimodal Sensors Using Deep Learning.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 25 March 2023 (10 papers)

[37482] doi:10.1016/j.bpsgos.2023.03.004 [paper, repository]

Pathway-Based Polygenic Risk Scores for Schizophrenia and Associations With Reported Psychotic-like Experiences and Neuroimaging Phenotypes in the UK Biobank.

Journal: Biological psychiatry global open science

Authors' code: mirunabarbu8/Fellowship-project (no license)

Status: dead link

[37483] doi:10.1038/s41467-023-37259-5 [paper, data]

Modulatory mechanisms of TARP γ8-selective AMPA receptor therapeutics.

Journal: Nature communications

Status: data only, 1 dataset cited

[37484] doi:10.1038/s41467-023-37318-x [paper, repository]

Determinants of functional synaptic connectivity among amygdala-projecting prefrontal cortical neurons in male mice.

Journal: Nature communications

Authors' code: Zenodo 7607227 (other-open), yizhar-lab/printz_nat_comm_2023 (MIT)

Status: code verified, 68 files readable, 19 matches

[37485] doi:10.1038/s41531-023-00485-1 [paper]

DOPAL initiates αSynuclein-dependent impaired proteostasis and degeneration of neuronal projections in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[37486] doi:10.1038/s42003-023-04696-3 [paper, repository]

Spatiotemporal spike-centered averaging reveals symmetry of temporal and spatial components of the spike-LFP relationship during human focal seizures.

Journal: Communications biology

Authors' code: sominlee14/stSCA_scripts (no license), Zenodo 7662440 (CC-BY-4.0)

Status: code verified, 24 files readable

[37487] doi:10.1093/braincomms/fcad073 [paper, repository]

Impairment of central language processing in critically ill coronavirus disease 2019 patients with delirium.

Journal: Brain communications

Authors' code: crnl-lab/EEG_2021_CAP_FPerrin_ComaDelirium_FFerre (BSD-3-Clause)

Status: code verified, 12 files readable, 2 matches

[37488] doi:10.1093/braincomms/fcad094 [paper, repository]

Low-level language processing in brain-injured patients.

Journal: Brain communications

Authors' code: jvlab/low-level_language_processing (no license)

Status: code verified, 678 files readable, 1 match

[37489] doi:10.1101/2023.03.24.534031 [paper, repository]

Visual cues and strategies for perceiving elasticity

Journal: bioRxiv (preprint)

Authors' code: Zenodo 17196171 (CC-BY-4.0)

Status: code verified, 5 files readable, 1 match

[37490] doi:10.1177/20503121231160953 [paper, data]

Effects of transcranial direct current stimulation (tDCS) in "Kiss nightclub fire" patients with post-traumatic stress disorder (PTSD): A phase II clinical trial.

Journal: SAGE open medicine

Status: data only, 1 dataset cited

[37491] doi:10.3390/s23073446 [paper, data]

Sleep Stage Classification in Children Using Self-Attention and Gaussian Noise Data Augmentation.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 24 March 2023 (25 papers)

[37492] doi:10.1007/s00221-023-06597-7 [paper, repository]

O hand, where art thou? Mapping hand location across the visual field during common activities.

Journal: Experimental brain research

Authors' code: OSF uwe9k (no license)

Status: code verified, 3 files readable, 2 matches

[37493] doi:10.1007/s00521-023-08457-5 [paper, data]

Machine learning based multipurpose medical image watermarking.

Journal: Neural computing & applications

Status: data only, 1 dataset cited

[37494] doi:10.1016/j.crneur.2023.100083 [paper, repository]

Are musical activities associated with enhanced speech perception in noise in adults? A systematic review and meta-analysis.

Journal: Current research in neurobiology

Authors' code: borealisdata.ca/dataverse/pascale_tremblay (no license)

Status: code verified

[37495] doi:10.1016/j.neuroimage.2023.120053 [paper, repository]

Independent spatiotemporal effects of spatial attention and background clutter on human object location representations.

Journal: NeuroImage

Authors' code: graumannm/AttentionLocation (no license)

Status: code verified, 12 files readable, 5 matches

[37496] doi:10.1016/j.xpro.2023.102197 [paper, data]

Cranial imaging window implantation technique for longitudinal multimodal imaging of the brain environment in live mice.

Journal: STAR protocols

Status: data only, 1 dataset cited

[37497] doi:10.1021/jacs.3c01663 [paper, repository]

Modular Oxidation of Cytosine Modifications and Their Application in Direct and Quantitative Sequencing of 5-Hydroxymethylcytosine.

Journal: Journal of the American Chemical Society

Authors' code: lkong888/CAPSplus (no license)

Status: code verified, 13 files readable, 1 match

[37498] doi:10.1038/s41467-023-37352-9 [paper, repository]

Sleep fMRI with simultaneous electrophysiology at 9.4 T in male mice.

Journal: Nature communications

Authors' code: TrangeTung/Mouse_Sleep_fMRI (no license)

Status: code verified, 106 files readable, 12 matches

[37499] doi:10.1038/s41598-023-31851-x [paper, data]

Recurrent activity in neuronal avalanches.

Journal: Scientific reports

Status: data only, 2 datasets cited

[37500] doi:10.1038/s41598-023-32043-3 [paper, data]

New insights into the neuroprotective and beta-secretase1 inhibitor profiles of tirandamycin B isolated from a newly found Streptomyces composti sp. nov.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37501] doi:10.1126/sciadv.ade4648 [paper, data]

Progressive neuronal plasticity in primate visual cortex during stimulus familiarization.

Journal: Science advances

Status: data only, 1 dataset cited

[37502] doi:10.1186/s12859-023-05233-z [paper, repository]

multiWGCNA: an R package for deep mining gene co-expression networks in multi-trait expression data.

Journal: BMC bioinformatics

Authors' code: fogellab/multiWGCNA (no license)

Status: code verified, 14 files readable, 5 matches

[37503] doi:10.1371/journal.pbio.3002056 [paper, data]

Feature-specific reactivations of past information shift current neural encoding thereby mediating serial bias behaviors.

Journal: PLoS biology

Status: data only, 1 dataset cited

[37504] doi:10.1371/journal.pcbi.1010985 [paper, repository]

Global nonlinear approach for mapping parameters of neural mass models.

Journal: PLoS computational biology

Authors' code: domdunstan/NerualMassModellingToolbox (MIT)

Status: code verified, 55 files readable, 10 matches

[37505] doi:10.3389/fncel.2023.1125029 [paper, data]

Microgeometrical dendritic factors predict electrical decoupling between somatic and dendritic compartments in magnocellular neurosecretory neurons.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[37506] doi:10.3389/fnmol.2023.1122308 [paper, data]

Impaired interactions of ataxin-3 with protein complexes reveals their specific structure and functions in SCA3 Ki150 model.

Journal: Frontiers in molecular neuroscience

Status: data only, 10 datasets cited

[37507] doi:10.3389/fonc.2023.1113121 [paper, data]

Sex differences in methylation profiles are apparent in medulloblastoma, particularly among SHH tumors.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[37508] doi:10.3389/fphar.2023.1113182 [paper, data]

URB2 as an important marker for glioma prognosis and immunotherapy.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[37509] doi:10.3390/bioengineering10040406 [paper, data]

Compression of Bio-Signals Using Block-Based Haar Wavelet Transform and COVIDOA for IoMT Systems.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[37510] doi:10.3390/diagnostics13071229 [paper, data]

Blockchain-Based Deep CNN for Brain Tumor Prediction Using MRI Scans.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[37511] doi:10.3390/jcm12072486 [paper, data]

App-Based Mindfulness Meditation Training and an Audiobook Intervention Reduce Symptom Severity but Do Not Modify Backward Inhibition in Adolescent Obsessive-Compulsive Disorder: Evidence from an EEG Study.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[37512] doi:10.3390/s23073420 [paper, repository]

High-Resolution Swin Transformer for Automatic Medical Image Segmentation.

Journal: Sensors (Basel, Switzerland)

Authors' code: auroua/HRSTNet (no license)

Status: code verified, 71 files readable, 7 matches

[37513] doi:10.3390/vision7020029 [paper, repository]

Ultrafast Image Categorization in Biology and Neural Models.

Journal: Vision (Basel, Switzerland)

Authors' code: spikeai/2022-09_ultrafastcat (no license), SpikeAI/DataSetMaker (no license), laurentperrinet.github.io/sciblog (no license)

Status: code verified, 3 files readable, 5 matches

[37514] doi:10.7554/elife.80160 [paper, repository]

Spatiotemporal organisation of human sensorimotor beta burst activity.

Journal: eLife

Authors' code: cathazi/Zich_2023_3DBursts (no license)

Status: code verified, 23 files readable, 7 matches

[37515] doi:10.7554/elife.84205 [paper, repository]

Cortical magnification eliminates differences in contrast sensitivity across but not around the visual field.

Journal: eLife

Authors' code: OSF gvkdh (no license), michaeljigo/palamedes_wrapper (GPL-3.0)

Status: code verified, 71 files readable, 8 matches

[37516] doi:10.7554/elife.87054 [paper, data]

Unraveling the roles of cerebrospinal fluid-contacting neurons.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 23 March 2023 (24 papers)

[37517] doi:10.1007/s12021-023-09622-w [paper, repository]

Analysis of Network Models with Neuron-Astrocyte Interactions.

Journal: Neuroinformatics

Authors' code: leonidsavtchenko/arachne (MIT), mdepitta/comp-glia-book (no license)

Status: code verified, 138 files readable, 3 matches

[37518] doi:10.1016/j.stemcr.2023.02.012 [paper, data]

Viral delivery of L1CAM promotes axonal extensions by embryonic cerebral grafts in mouse brain.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[37519] doi:10.1038/s41467-023-37328-9 [paper, data]

STING agonist-loaded, CD47/PD-L1-targeting nanoparticles potentiate antitumor immunity and radiotherapy for glioblastoma.

Journal: Nature communications

Status: data only, 7 datasets cited

[37520] doi:10.1038/s41593-023-01281-z [paper, repository]

Ascending neurons convey behavioral state to integrative sensory and action selection brain regions.

Journal: Nature neuroscience

Authors' code: nely-epfl/makeaveragebrain (no license), NeLy-EPFL/Ascending_neuron_screen_analysis_pipeline (Apache-2.0), NeLy-EPFL/AxoID (MIT)

Status: code verified, 134 files readable, 34 matches

[37521] doi:10.1038/s41598-023-31264-w [paper, repository]

Assessing the development of mental fatigue during simulated flights with concurrent EEG-fNIRS measurement.

Journal: Scientific reports

Authors' code: aspredicted.org/fh77h.pdf (no license)

Status: code verified

[37522] doi:10.1038/s43588-023-00417-2 [paper, data]

Full-scale scaffold model of the human hippocampus CA1 area.

Journal: Nature computational science

Status: data only, 1 dataset cited

[37523] doi:10.1073/pnas.2120288120 [paper, repository]

Identifying causal subsequent memory effects.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 11 matches

[37524] doi:10.1111/acel.13817 [paper, data]

Effect of peripheral cellular senescence on brain aging and cognitive decline.

Journal: Aging cell

Status: data only, 1 dataset cited

[37525] doi:10.1186/s13195-023-01200-1 [paper, repository]

Clusters of co-abundant proteins in the brain cortex associated with fronto-temporal lobar degeneration.

Journal: Alzheimer's research & therapy

Authors' code: ibivu/FTD_PRODIA (CC0-1.0)

Status: code verified, 12 files readable, 5 matches

[37526] doi:10.1186/s13287-023-03261-3 [paper, data]

Human cortical spheroids with a high diversity of innately developing brain cell types.

Journal: Stem cell research & therapy

Status: data only, 6 datasets cited

[37527] doi:10.1242/dev.201099 [paper, repository]

Actin-capping protein regulates actomyosin contractility to maintain germline architecture in C. elegans.

Journal: Development (Cambridge, England)

Authors' code: f-nedelec/cytosim (GPL-3.0)

Status: code verified, 745 files readable, 1 match

[37528] doi:10.1371/journal.pcbi.1010942 [paper, repository]

Theta-gamma phase amplitude coupling in a hippocampal CA1 microcircuit.

Journal: PLoS computational biology

Authors' code: adampdp/plosCB-PAC (no license), modeldb:267686 (no license)

Status: code verified, 54 files readable, 1 match

[37529] doi:10.1371/journal.pone.0282707 [paper, repository]

Metastability as a candidate neuromechanistic biomarker of schizophrenia pathology.

Journal: PloS one

Authors' code: Zenodo 7500799 (other-open), franhancock/meta_schz (MIT)

Status: code verified, 121 files readable, 11 matches

[37530] doi:10.1371/journal.pone.0282950 [paper, data]

Decomposing past and future: Integrated information decomposition based on shared probability mass exclusions.

Journal: PloS one

Status: data only, 1 dataset cited

[37531] doi:10.1371/journal.pone.0283418 [paper, data]

Neural and behavioral adaptations to frontal theta neurofeedback training: A proof of concept study.

Journal: PloS one

Status: data only, 1 dataset cited

[37532] doi:10.3389/fnins.2023.1092125 [paper, repository]

Functional connectivity MRI quality control procedures in CONN.

Journal: Frontiers in neuroscience

Authors' code: alfnie/conn (no license)

Status: code verified, 323 files readable, 9 matches

[37533] doi:10.3389/fnmol.2023.1133106 [paper, data]

Exploring molecular signatures related to the mechanism of aging in different brain regions by integrated bioinformatics.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[37534] doi:10.3390/bioengineering10040397 [paper, data]

Machine Learning for Brain MRI Data Harmonisation: A Systematic Review.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[37535] doi:10.3390/cells12070985 [paper, data]

Tau Transfer via Extracellular Vesicles Disturbs the Astrocytic Mitochondrial System.

Journal: Cells

Status: data only, 1 dataset cited

[37536] doi:10.3390/diagnostics13071216 [paper, data]

Accurate Detection of Alzheimer's Disease Using Lightweight Deep Learning Model on MRI Data.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[37537] doi:10.3390/s23073382 [paper, data]

Diverse Task Classification from Activation Patterns of Functional Neuro-Images Using Feature Fusion Module.

Journal: Sensors (Basel, Switzerland)

Status: data only, 11 datasets cited

[37538] doi:10.7554/elife.79305 [paper, repository]

Open-source tools for behavioral video analysis: Setup, methods, and best practices.

Journal: eLife

Authors' code: neuroethology/BKinD (Apache-2.0), neuroethology/MARS (no license), YttriLab/B-SOID (GPL-3.0), LINCellularNeuroscience/VAME (GPL-3.0), neuroethology/TREBA (CC-BY-NC-SA-4.0), paperswithcode/releasing-research-code (MIT)

Status: code verified, 257 files readable, 1 match

[37539] doi:10.7554/elife.79452 [paper, repository]

UBQLN2 restrains the domesticated retrotransposon PEG10 to maintain neuronal health in ALS.

Journal: eLife

Authors' code: jwtay1/PEG10-image-analysis (no license)

Status: code verified, 8 files readable

[37540] doi:10.7554/elife.83979 [paper, repository]

Nutrigenomic regulation of sensory plasticity.

Journal: eLife

Authors' code: supp:PMC10036121/elife-83979-code1.zip (no license)

Status: code verified, 1 file readable

Wednesday, 22 March 2023 (25 papers)

[37541] doi:10.1007/s13246-023-01225-8 [paper, data]

Exploring deep residual network based features for automatic schizophrenia detection from EEG.

Journal: Physical and engineering sciences in medicine

Status: data only, 1 dataset cited

[37542] doi:10.1016/j.celrep.2023.112283 [paper]

MrgprA3-expressing pruriceptors drive pruritogen-induced alloknesis through mechanosensitive Piezo2 channel.

Journal: Cell reports

Status: code on request

[37543] doi:10.1016/j.celrep.2023.112287 [paper, data]

Thalamic regulation of a visual critical period and motor behavior.

Journal: Cell reports

Status: data only, 1 dataset cited

[37544] doi:10.1016/j.mcpro.2023.100534 [paper, data]

Proteomic Analysis of Huntington's Disease Medium Spiny Neurons Identifies Alterations in Lipid Droplets.

Journal: Molecular & cellular proteomics : MCP

Status: data only, 1 dataset cited

[37545] doi:10.1016/j.neuroimage.2023.120025 [paper, repository]

Functional organization of social perception networks in the human brain.

Journal: NeuroImage

Authors' code: santavis/functional-organization-of-social-perception (MIT)

Status: code verified, 14 files readable, 13 matches

[37546] doi:10.1016/j.neuroimage.2023.120038 [paper, repository]

Comparing end-tidal CO₂, respiration volume per time (RVT), and average gray matter signal for mapping cerebrovascular reactivity amplitude and delay with breath-hold task BOLD fMRI.

Journal: NeuroImage

Authors' code: git.bcbl.eu/smoia/euskalibur_container (no license), smoia/EuskalIBUR_preproc (Apache-2.0), BrightLab-ANVIL/Zvolanek_2022 (MIT), Zenodo 7336002 (Apache-2.0), Zenodo 3586045 (other-open), physiopy/phys2bids (Apache-2.0), smoia/phys2cvr (Apache-2.0)

Status: code verified, 122 files readable, 7 matches

[37547] doi:10.1038/s41386-023-01568-6 [paper, data]

Node of Ranvier remodeling in chronic psychosocial stress and anxiety.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 1 dataset cited

[37548] doi:10.1038/s41398-023-02390-w [paper, repository]

BrainGENIE: The Brain Gene Expression and Network Imputation Engine.

Journal: Translational psychiatry

Authors' code: hessJ/BrainGENIE (MIT)

Status: code verified, 5 files readable, 1 match

[37549] doi:10.1038/s41467-023-36878-2 [paper, repository]

Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade.

Journal: Nature communications

Authors' code: RabadanLab/Chek2_scRNAseq (no license)

Status: code verified, 3 files readable, 1 match

[37550] doi:10.1038/s41467-023-37099-3 [paper, data]

Bitter taste cells in the ventricular walls of the murine brain regulate glucose homeostasis.

Journal: Nature communications

Status: data only, 2 datasets cited

[37551] doi:10.1038/s41467-023-37240-2 [paper, repository]

Rescue of astrocyte activity by the calcium sensor STIM1 restores long-term synaptic plasticity in female mice modelling Alzheimer's disease.

Journal: Nature communications

Authors' code: ladymariot/AstroResp (MIT)

Status: code verified, 5 files readable

[37552] doi:10.1038/s41467-023-37306-1 [paper, repository]

IGFBP5 is an ROR1 ligand promoting glioblastoma invasion via ROR1/HER2-CREB signaling axis.

Journal: Nature communications

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[37553] doi:10.1038/s41586-023-05813-2 [paper, data]

Population dynamics of head-direction neurons during drift and reorientation.

Journal: Nature

Status: code on request, 1 dataset cited

[37554] doi:10.1038/s41586-023-05827-w [paper, repository]

Interhemispheric competition during sleep.

Journal: Nature

Authors' code: brain.mpg.de/research/laurent-department (no license)

Status: code verified

[37555] doi:10.1038/s41586-023-05854-7 [paper, data]

CFTR function, pathology and pharmacology at single-molecule resolution.

Journal: Nature

Status: data only, 1 dataset cited

[37556] doi:10.1038/s41597-023-02055-9 [paper, repository]

An intracochlear electrocochleography dataset - from raw data to objective analysis using deep learning.

Journal: Scientific data

Authors' code: Zenodo 7092661 (MIT)

Status: code verified

[37557] doi:10.1098/rsos.221560 [paper, repository]

Diagnosis of a brain stroke using wideband microwave scattering.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6461057 (no license)

Status: code found, still to be checked

[37558] doi:10.1098/rsos.230196 [paper, repository]

Neuroanatomical correlates of system-justifying ideologies: a pre-registered voxel-based morphometry study on right-wing authoritarianism and social dominance orientation.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6461060 (no license)

Status: code found, still to be checked

[37559] doi:10.1111/acel.13798 [paper, data]

The reverse transcriptase inhibitor 3TC protects against age-related cognitive dysfunction.

Journal: Aging cell

Status: data only, 1 dataset cited

[37560] doi:10.1152/jn.00029.2022 [paper, repository]

Developmental changes in electrophysiological properties of auditory cortical neurons in the <i>Cntnap2</i> knockout rat.

Journal: Journal of neurophysiology

Authors' code: AllenInstitute/ipfx (BSD-2-Clause)

Status: code verified, 144 files readable, 4 matches

[37561] doi:10.1152/jn.00085.2022 [paper, data]

Weak evidence for neural correlates of task-switching in macaque V1.

Journal: Journal of neurophysiology

Status: code on request, 1 dataset cited

[37562] doi:10.1371/journal.pbio.3002046 [paper, repository]

A deep hierarchy of predictions enables online meaning extraction in a computational model of human speech comprehension.

Journal: PLoS biology

Authors' code: OSF qvghf (no license), suyaqing/hierarchical-speech (no license)

Status: code verified, 19 files readable, 11 matches

[37563] doi:10.3389/frai.2023.1120297 [paper, repository]

Deep treasury management for banks.

Journal: Frontiers in artificial intelligence

Authors' code: konmue/deep_alm (no license)

Status: dead link

[37564] doi:10.3758/s13415-023-01083-7 [paper, repository]

My view on your actions: Dynamic changes in viewpoint-dependent auditory ERP attenuation during action observation.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF fgrb3 (no license)

Status: code verified, 2 files readable, 2 matches

[37565] doi:10.7554/elife.83593 [paper, repository]

Regulatory and coding sequences of TRNP1 co-evolve with brain size and cortical folding in mammals.

Journal: eLife

Authors' code: Hellmann-Lab/Co-evolution-TRNP1-and-GI (GPL-3.0)

Status: code verified, 111 files readable, 33 matches

Tuesday, 21 March 2023 (27 papers)

[37566] doi:10.1016/j.bpsc.2023.02.009 [paper, data]

Effects of the COVID-19 Pandemic on Neural Responses to Reward: A Quasi-experiment.

Journal: Biological psychiatry. Cognitive neuroscience and neuroimaging

Status: data only, 1 dataset cited

[37567] doi:10.1016/j.celrep.2023.112293 [paper, repository]

Transcriptomic atlas and interaction networks of brain cells in mouse CNS demyelination and remyelination.

Journal: Cell reports

Authors' code: marcocolonnalab/CPZ (no license)

Status: code verified, 4 files readable, 4 matches

[37568] doi:10.1016/j.celrep.2023.112295 [paper, repository]

c-Maf-positive spinal cord neurons are critical elements of a dorsal horn circuit for mechanical hypersensitivity in neuropathy.

Journal: Cell reports

Authors' code: Zenodo 7648723 (CC-BY-4.0)

Status: empty repository

[37569] doi:10.1016/j.isci.2023.106466 [paper, data]

Bat vocal sequences enhance contextual information independently of syllable order.

Journal: iScience

Status: data only, 1 dataset cited

[37570] doi:10.1016/j.neuron.2023.02.033 [paper, repository]

Neuronal identity defines α-synuclein and tau toxicity.

Journal: Neuron

Authors' code: Zenodo 7562338 (CC-BY-4.0), rethomics/behavr (no license), rethomics/scopr (no license), rethomics/sleepr (no license)

Status: code verified, 68 files readable, 2 matches

[37571] doi:10.1016/j.patter.2023.100709 [paper, repository]

A deep-learning method for the end-to-end prediction of intracranial aneurysm rupture risk.

Journal: Patterns (New York, N.Y.)

Authors' code: deepwise-code/DLIA (no license), CMACH508/TransIAR (no license), LPDI-EPFL/masif (Apache-2.0), Zenodo 7536386 (other-open)

Status: code verified, 320 files readable, 6 matches

[37572] doi:10.1038/s41467-023-36959-2 [paper]

Multiplex translaminar imaging in the spinal cord of behaving mice.

Journal: Nature communications

Status: code on request

[37573] doi:10.1038/s41467-023-37015-9 [paper, repository]

Single-cell transcriptomics uncovers a non-autonomous Tbx1-dependent genetic program controlling cardiac neural crest cell development.

Journal: Nature communications

Authors' code: bioinfoDZ/RISC (GPL-3.0)

Status: code verified, 29 files readable, 1 match

[37574] doi:10.1038/s41467-023-37045-3 [paper, repository]

Cocaine induces locomotor sensitization through a dopamine-dependent VTA-mPFC-FrA cortico-cortical pathway in male mice.

Journal: Nature communications

Authors' code: lunwangm/2PMI (no license)

Status: code verified, 1 file readable

[37575] doi:10.1038/s41467-023-37097-5 [paper, repository]

A self-adaptive hardware with resistive switching synapses for experience-based neurocomputing.

Journal: Nature communications

Authors' code: Bianchi27/A-self-adaptive-hardware-with-resistive-switching-synapses-for-experience-based-neurocomputing (no license)

Status: code verified, 1 file readable

[37576] doi:10.1038/s41467-023-37242-0 [paper, repository]

Characterisation of ASD traits among a cohort of children with isolated fetal ventriculomegaly.

Journal: Nature communications

Authors' code: JohnDickerson/TrackIt (GPL-2.0), SVRTK/SVRTK (Apache-2.0), mirtk/drawem (Apache-2.0)

Status: code verified, 209 files readable

[37577] doi:10.1038/s41467-023-37280-8 [paper, repository]

Comparing retinotopic maps of children and adults reveals a late-stage change in how V1 samples the visual field.

Journal: Nature communications

Authors' code: vistalab/vistadisp (no license), OSF 2yqwe (no license)

Status: code verified, 770 files readable, 5 matches

[37578] doi:10.1038/s41597-023-02012-6 [paper, data]

A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia.

Journal: Scientific data

Status: data only, 4 datasets cited

[37579] doi:10.1038/s41598-023-31111-y [paper]

Non-invasive measurements of ictal and interictal epileptiform activity using optically pumped magnetometers.

Journal: Scientific reports

Status: code on request

[37580] doi:10.1038/s41598-023-31752-z [paper, data]

Potentiated early neural responses to fearful faces are not driven by specific face parts.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37581] doi:10.1111/infa.12540 [paper, repository]

Neural mechanisms of language development in infancy.

Journal: Infancy : the official journal of the International Society on Infant Studies

Authors' code: calculquebec.ca (no license), computecanada.ca (no license)

Status: code verified

[37582] doi:10.1177/15269248231164176 [paper, repository]

Organ Transplantation Outcomes of Deceased Organ Donors in Organ Procurement Organization-Based Recovery Facilities Versus Acute-Care Hospitals.

Journal: Progress in transplantation (Aliso Viejo, Calif.)

Authors' code: OSF hxfr5 (no license)

Status: empty repository

[37583] doi:10.1242/bio.059647 [paper, data]

New K50R mutant mouse models reveal impaired hypusination of eif5a2 with alterations in cell metabolite landscape.

Journal: Biology open

Status: data only, 1 dataset cited

[37584] doi:10.1371/journal.pone.0279841 [paper, repository]

Distinct cortico-striatal compartments drive competition between adaptive and automatized behavior.

Journal: PloS one

Authors' code: whbdupree/DMS_DLS_for_PLOSONE (MIT)

Status: code verified, 20 files readable, 7 matches

[37585] doi:10.21105/joss.05023 [paper, repository]

High-performance neural population dynamics modeling enabled by scalable computational infrastructure.

Journal: Journal of open source software

Authors' code: Zenodo 7719505 (MIT), tnel-ucsd/autolfads-deploy (MIT)

Status: code verified, 88 files readable

[37586] doi:10.3389/fgene.2023.1109547 [paper, data]

Characterizing a rare neurogenetic disease, SLC13A5 citrate transporter disorder, utilizing clinical data in a cloud-based medical record collection system.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[37587] doi:10.3389/fimmu.2023.1151574 [paper, data]

Patients' IgLON5 autoantibodies interfere with IgLON5-protein interactions.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[37588] doi:10.3389/fninf.2023.1122470 [paper, repository]

Neural simulation pipeline: Enabling container-based simulations on-premise and in public clouds.

Journal: Frontiers in neuroinformatics

Authors' code: KarolChlasta/nsp-code (GPL-2.0), KarolChlasta/nsp-model (no license)

Status: code verified, 965 files readable

[37589] doi:10.3389/fphar.2023.1100556 [paper]

Real-world efficacy and safety of pyrotinib in patients with HER2-positive metastatic breast cancer: A prospective real-world study.

Journal: Frontiers in pharmacology

Status: code on request

[37590] doi:10.3390/cells12060948 [paper, repository]

Transcriptional and Chromatin Accessibility Profiling of Neural Stem Cells Differentiating into Astrocytes Reveal Dynamic Signatures Affected under Inflammatory Conditions.

Journal: Cells

Authors' code: gitlab.lcsb.uni.lu/andras.hartmann/grnoptr (AGPL-3.0)

Status: code verified, 16 files readable, 1 match

[37591] doi:10.3390/ijms24065909 [paper, data]

Co-Expression Network Analysis Identifies Molecular Determinants of Loneliness Associated with Neuropsychiatric and Neurodegenerative Diseases.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[37592] doi:10.7554/elife.78381 [paper, repository]

Recurrent network interactions explain tectal response variability and experience-dependent behavior.

Journal: eLife

Authors' code: azylbertal/TectalLNP (MIT)

Status: code verified, 6 files readable, 2 matches

Monday, 20 March 2023 (23 papers)

[37593] doi:10.1007/s11042-023-14831-1 [paper, data]

MediNet: transfer learning approach with MediNet medical visual database.

Journal: Multimedia tools and applications

Status: data only, 5 datasets cited

[37594] doi:10.1007/s43657-023-00100-6 [paper, repository]

Hidden Genetic Regulation of Human Complex Traits via Brain Isoforms.

Journal: Phenomics (Cham, Switzerland)

Authors' code: eudoraleer/Code_for_Brain_Isoform (GPL-3.0)

Status: code verified, 4 files readable, 1 match

[37595] doi:10.1016/j.jelectrocard.2023.03.010 [paper, repository]

An electrophysiological substrate of COVID-19.

Journal: Journal of electrocardiology

Authors' code: Tereshchenkolab/statistics (MIT)

Status: code verified, 17 files readable, 2 matches

[37596] doi:10.1016/j.neuroimage.2023.120044 [paper, repository]

Comparison between gradients and parcellations for functional connectivity prediction of behavior.

Journal: NeuroImage

Authors' code: ThomasYeoLab/CBIG (MIT)

Status: code verified, 2,000 files readable, 3 matches

[37597] doi:10.1038/s41398-023-02325-5 [paper, repository]

The gut microbiome in social anxiety disorder: evidence of altered composition and function.

Journal: Translational psychiatry

Authors' code: thomazbastiaanssen/Tjazi (GPL-3.0)

Status: code verified, 24 files readable, 7 matches

[37598] doi:10.1038/s42003-023-04675-8 [paper, data]

Spectrotemporal content of human auditory working memory represented in functional connectivity patterns.

Journal: Communications biology

Status: data only, 1 dataset cited

[37599] doi:10.1038/s43588-023-00410-9 [paper, repository]

Statistical modeling of adaptive neural networks explains co-existence of avalanches and oscillations in resting human brain.

Journal: Nature computational science

Authors' code: demartid/stat_mod_ada_nn (no license), Zenodo 7426504 (other-open)

Status: code verified, 8 files readable, 2 matches

[37600] doi:10.1073/pnas.2205448120 [paper, repository]

Brain volume, energy balance, and cardiovascular health in two nonindustrial South American populations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hkaplan/tsimane-brain-volume (no license)

Status: code verified, 2 files readable, 2 matches

[37601] doi:10.1073/pnas.2218949120 [paper, repository]

Human brain effects of DMT assessed via EEG-fMRI.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: timmer500/DMT_Imaging (no license)

Status: code verified, 10 files readable, 9 matches

[37602] doi:10.1097/wnr.0000000000001899 [paper, data]

The temporal and spatial signature of microglial transcriptome in neuropathic pain.

Journal: Neuroreport

Status: data only, 2 datasets cited

[37603] doi:10.1136/bmjopen-2022-071043 [paper, repository]

Can artificial intelligence accelerate the diagnosis of inherited retinal diseases? Protocol for a data-only retrospective cohort study (Eye2Gene).

Journal: BMJ open

Authors' code: Eye2Gene (no license)

Status: code verified

[37604] doi:10.1186/s12888-023-04666-3 [paper, data]

A bibliometric analysis of global research status and trends in neuromodulation techniques in the treatment of autism spectrum disorder.

Journal: BMC psychiatry

Status: data only, 2 datasets cited

[37605] doi:10.1186/s12987-023-00421-8 [paper]

Estimates of the permeability of extra-cellular pathways through the astrocyte endfoot sheath.

Journal: Fluids and barriers of the CNS

Status: code on request

[37606] doi:10.1186/s40478-023-01531-y [paper, data]

Exceptionally rare IDH1-mutant adult medulloblastoma with concurrent GNAS mutation revealed by in vivo magnetic resonance spectroscopy and deep sequencing.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[37607] doi:10.1371/journal.pgph.0001612 [paper, data]

Causes of death identified in neonates enrolled through Child Health and Mortality Prevention Surveillance (CHAMPS), December 2016 -December 2021.

Journal: PLOS global public health

Status: data only, 2 datasets cited

[37608] doi:10.21769/bioprotoc.4632 [paper, repository]

Fast Detection and Quantification of Interictal Spikes and Seizures in a Rodent Model of Epilepsy Using an Automated Algorithm.

Journal: Bio-protocol

Authors' code: Jackson-Kyle-CCOM/Automated-EEG-Algorithm (AGPL-3.0)

Status: code verified, 6 files readable, 5 matches

[37609] doi:10.3389/fncel.2023.1147381 [paper, repository]

Modularity and neuronal heterogeneity: Two properties that influence <i>in vitro</i> neuropharmacological experiments.

Journal: Frontiers in cellular neuroscience

Authors' code: Zenodo 7665283 (other-open)

Status: code verified

[37610] doi:10.3389/fncom.2023.1128694 [paper, repository]

Flexible intentions: An Active Inference theory.

Journal: Frontiers in computational neuroscience

Authors' code: priorelli/PACE (no license)

Status: code verified, 22 files readable, 2 matches

[37611] doi:10.3389/fnins.2023.1146264 [paper, repository]

Tracking functional network connectivity dynamics in the elderly.

Journal: Frontiers in neuroscience

Authors' code: xiaohajiayouo/Tracking_Functional_Network_Connectivity_Dynamics_in_the_Elderly (MIT)

Status: code verified, 8 files readable

[37612] doi:10.3389/fphar.2023.1118216 [paper, repository]

Acute effect of antiseizure drugs on background oscillations in <i>Scn1a</i> ^A1783V Dravet syndrome mouse model.

Journal: Frontiers in pharmacology

Authors' code: shirquinn/Rubinstein_Lab (no license)

Status: dead link

[37613] doi:10.3389/frdem.2023.1126016 [paper, repository]

Connectome-based predictive modeling shows sex differences in brain-based predictors of memory performance.

Journal: Frontiers in dementia

Authors' code: YaleMRRC/CPM (no license), frederickslab/CPM_HCP-A_sex_difference_study (no license)

Status: code verified, 58 files readable, 12 matches

[37614] doi:10.7554/elife.83529 [paper, repository]

Context-dependent requirement of G protein coupling for Latrophilin-2 in target selection of hippocampal axons.

Journal: eLife

Authors' code: dpederick/reciprocal-repulsions-instruct-the-precise-assembly-of-parallel-hippocampal-networks (no license)

Status: code verified, 5 files readable, 1 match

[37615] doi:10.7717/peerj.14835 [paper, repository]

The effect of node features on GCN-based brain network classification: an empirical study.

Journal: PeerJ

Authors' code: supp:PMC10035427/peerj-11-14835-s003.zip (no license)

Status: code verified, 1 file readable, 1 match

Sunday, 19 March 2023 (2 papers)

[37616] doi:10.1186/s12984-023-01147-2 [paper]

Robust walking control of a lower limb rehabilitation exoskeleton coupled with a musculoskeletal model via deep reinforcement learning.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[37617] doi:10.3390/cancers15061844 [paper, repository]

Cognitive Sparing in Proton versus Photon Radiotherapy for Pediatric Brain Tumor Is Associated with White Matter Integrity: An Exploratory Study.

Journal: Cancers

Authors' code: yeatmanlab/AFQ (gnu)

Status: code verified, 180 files readable, 2 matches

Saturday, 18 March 2023 (8 papers)

[37618] doi:10.1007/s00018-023-04753-4 [paper, data]

Endogenous but not sensory-driven activity controls migration, morphogenesis and survival of adult-born juxtaglomerular neurons in the mouse olfactory bulb.

Journal: Cellular and molecular life sciences : CMLS

Status: code on request, 1 dataset cited

[37619] doi:10.1007/s00401-023-02558-0 [paper, data]

Glioneuronal tumor with ATRX alteration, kinase fusion and anaplastic features (GTAKA): a molecularly distinct brain tumor type with recurrent NTRK gene fusions.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[37620] doi:10.1007/s10456-023-09870-z [paper, data]

The vascular gene Apold1 is dispensable for normal development but controls angiogenesis under pathological conditions.

Journal: Angiogenesis

Status: data only, 1 dataset cited

[37621] doi:10.1038/s42003-023-04648-x [paper, repository]

Dissociation between phase and power correlation networks in the human brain is driven by co-occurrent bursts.

Journal: Communications biology

Authors' code: Prejaas/amplitudecoupling (no license)

Status: code verified, 4 files readable, 2 matches

[37622] doi:10.1038/s42003-023-04665-w [paper, data]

CCR3 plays a role in murine age-related cognitive changes and T-cell infiltration into the brain.

Journal: Communications biology

Status: data only, 2 datasets cited

[37623] doi:10.1101/2023.03.16.532911 [paper, repository]

Statistical analyses of motion-corrupted MRI relaxometry data

Journal: bioRxiv (preprint)

Authors' code: Zenodo 7612032 (CC-BY-4.0), lren-physics/quiqianalysisscript (GPL-3.0)

Status: code verified, 42 files readable

[37624] doi:10.1186/s13041-023-01018-w [paper, data]

Spatiotemporal expression patterns of genes coding for plasmalemmal chloride transporters and channels in neurological diseases.

Journal: Molecular brain

Status: data only, 1 dataset cited

[37625] doi:10.1186/s40478-023-01549-2 [paper, data]

Clinicopathological and molecular characterization of a case classified by DNA‑methylation profiling as "CNS embryonal tumor with BRD4-LEUTX fusion".

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

Friday, 17 March 2023 (31 papers, 7 on this page)

[37626] doi:10.1007/s00359-023-01616-y [paper, repository]

Lineages to circuits: the developmental and evolutionary architecture of information channels into the central complex.

Journal: Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology

Authors' code: google/neuroglancer (Apache-2.0), KandimallaPrat/Lineages2Circuits (no license)

Status: code verified, 912 files readable

[37627] doi:10.1007/s12031-023-02114-1 [paper]

Sevoflurane Preconditioning Alleviates Posttraumatic Stress Disorder-Induced Apoptosis in the Hippocampus via the EZH2-Regulated Akt/mTOR Axis and Improves Synaptic Plasticity.

Journal: Journal of molecular neuroscience : MN

Status: code on request

[37628] doi:10.1016/j.celrep.2023.112182 [paper]

Inter-axonal molecular crosstalk via Lumican proteoglycan sculpts murine cervical corticospinal innervation by distinct subpopulations.

Journal: Cell reports

Status: code on request

[37629] doi:10.1016/j.celrep.2023.112243 [paper, repository]

High-throughput functional analysis of autism genes in zebrafish identifies convergence in dopaminergic and neuroimmune pathways.

Journal: Cell reports

Authors' code: jrihel/sleep-analysis (CC0-1.0), Zenodo 7644073 (other-open), ehoffmanlab/Weinschutz-Mendes-et-al-2023-behavior (GPL-3.0), Zenodo 7644898 (other-open), ehoffmanlab/Weinschutz-Mendes-et-al-2023-mapping (GPL-3.0), Zenodo 7644861 (other-open)

Status: code verified, 98 files readable, 2 matches

[37630] doi:10.1016/j.celrep.2023.112247 [paper]

Somatic and terminal CB1 receptors are differentially coupled to voltage-gated sodium channels in neocortical neurons.

Journal: Cell reports

Status: code on request

[37631] doi:10.1016/j.crmeth.2023.100436 [paper, repository]

Rapid and fully automated blood vasculature analysis in 3D light-sheet image volumes of different organs.

Journal: Cell reports methods

Authors' code: RUB-Bioinf/VesselExpress (GPL-3.0), Zenodo 7677102 (CC-BY-4.0)

Status: code verified, 36 files readable, 8 matches

[37632] doi:10.1016/j.neuroimage.2023.120018 [paper, repository]

The effects of propofol anaesthesia on molecular-enriched networks during resting-state and naturalistic listening.

Journal: NeuroImage

Authors' code: ottaviadipasquale/react-fmri (MIT), Zenodo 5138031 (other-open)

Status: code verified, 10 files readable

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