Every paper, by date: page 169

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 169 of 200: 17 March 2023 to 8 March 2023.

Friday, 17 March 2023 (31 papers, 24 on this page)

[37633] doi:10.1038/s41398-023-02392-8 [paper, repository]

Antipsychotic drug use complicates assessment of gene expression changes associated with schizophrenia.

Journal: Translational psychiatry

Authors' code: aschulmann/antipsychotics_signature (no license)

Status: code verified, 3 files readable, 14 matches

[37634] doi:10.1038/s41467-023-36943-w [paper, repository]

The cerebellum regulates fear extinction through thalamo-prefrontal cortex interactions in male mice.

Journal: Nature communications

Authors' code: Eden-Kramer-Lab/spectral_connectivity (GPL-3.0), Zenodo 7603770 (MIT)

Status: code verified, 71 files readable, 3 matches

[37635] doi:10.1038/s41467-023-37044-4 [paper, repository]

Lateral hypothalamic leptin receptor neurons drive hunger-gated food-seeking and consummatory behaviours in male mice.

Journal: Nature communications

Authors' code: figshare 22058123 (CC0-1.0), parkgilbong/Minhee_Analysis_Pack (no license)

Status: code verified, 1 file readable

[37636] doi:10.1038/s41467-023-37246-w [paper, repository]

Brain-wide and cell-specific transcriptomic insights into MRI-derived cortical morphology in macaque monkeys.

Journal: Nature communications

Authors' code: WangLab-SINH/Macaque_Brain_Transcriptome_MRI (no license), Zenodo 7641873 (other-open)

Status: code verified, 18 files readable, 8 matches

[37637] doi:10.1038/s42003-023-04637-0 [paper, repository]

Opposite effects of positive and negative symptoms on resting-state brain networks in schizophrenia.

Journal: Communications biology

Authors' code: thomasyeolab/cbig (MIT), TobousRong/schizophrenia (no license)

Status: code verified, 2,011 files readable

[37638] doi:10.1084/jem.20220776 [paper, repository]

Vision rescue via unconstrained in vivo prime editing in degenerating neural retinas.

Journal: The Journal of experimental medicine

Authors' code: tsailabSJ/circleseq (AGPL-3.0)

Status: code verified, 27 files readable

[37639] doi:10.1093/braincomms/fcad071 [paper, repository]

A vertigo network derived from human brain lesions and brain stimulation.

Journal: Brain communications

Authors' code: lead-dbs.org (no license)

Status: code verified

[37640] doi:10.1101/2023.03.16.532915 [paper, data]

General and specific patterns of cortical gene expression as spatial correlates of complex cognitive functioning

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[37641] doi:10.1101/gad.350269.122 [paper, repository]

Pioneer factor ASCL1 cooperates with the mSWI/SNF complex at distal regulatory elements to regulate human neural differentiation.

Journal: Genes & development

Authors' code: Zenodo 3529400 (other-open), pysam-developers/pysam (MIT), Zenodo 3529420 (other-open), linnarsson-lab/developing-human-brain (BSD-2-Clause), genesdev.cshlp.org/lookup/suppl (no license), nf-core/chipseq (MIT), nf-core/atacseq (MIT)

Status: code verified, 523 files readable, 1 match

[37642] doi:10.1126/sciadv.abq7547 [paper, repository]

Characterization of regional differences in resting-state fMRI with a data-driven network model of brain dynamics.

Journal: Science advances

Authors' code: ins-amu/SipEtAl_RegionalDifferencesInRsFMRI (MIT), Zenodo 7643612 (other-open)

Status: code verified, 38 files readable, 8 matches

[37643] doi:10.1186/s12974-023-02760-7 [paper, data]

Tregs dysfunction aggravates postoperative cognitive impairment in aged mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[37644] doi:10.1186/s13073-023-01168-5 [paper, repository]

spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data.

Journal: Genome medicine

Authors' code: bsungwoo/spSeudoMap (no license)

Status: code verified, 9 files readable, 8 matches

[37645] doi:10.1186/s13578-023-01012-8 [paper, repository]

Fetal hypoxia results in sex- and cell type-specific alterations in neonatal transcription in rat oligodendrocyte precursor cells, microglia, neurons, and oligodendrocytes.

Journal: Cell & bioscience

Authors' code: ikremsky/Scripts-for-Fetal-hypoxia-results-in-sex--and-cell-type-specific-alterations-in-neonatal-transcript (no license)

Status: code verified, 42 files readable, 4 matches

[37646] doi:10.1523/eneuro.0007-22.2023 [paper, repository]

Synthetic Data Resource and Benchmarks for Time Cell Analysis and Detection Algorithms.

Journal: eNeuro

Authors' code: BhallaLab/TimeCellAnalysis (no license)

Status: code verified, 255 files readable, 10 matches

[37647] doi:10.1523/eneuro.0153-22.2023 [paper, repository]

<i>Cnih3</i> Deletion Dysregulates Dorsal Hippocampal Transcription across the Estrous Cycle.

Journal: eNeuro

Authors' code: jdlabteam/workspace (no license)

Status: dead link

[37648] doi:10.1523/eneuro.0470-21.2023 [paper, data]

Nonlinear Theta-Gamma Coupling between the Anterior Thalamus and Hippocampus Increases as a Function of Running Speed.

Journal: eNeuro

Status: data only, 1 dataset cited

[37649] doi:10.3389/fcell.2023.1163400 [paper, data]

Endothelin-1-Endothelin receptor B complex contributes to oligodendrocyte differentiation and myelin deficits during preterm white matter injury.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[37650] doi:10.3389/fneur.2023.1142734 [paper, data]

Case report: Multiple disconnection patterns revealed by a multi-modal analysis explained behavior after a focal frontal damage.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[37651] doi:10.3390/cancers15061820 [paper, repository]

MR-Class: A Python Tool for Brain MR Image Classification Utilizing One-vs-All DCNNs to Deal with the Open-Set Recognition Problem.

Journal: Cancers

Authors' code: TRO-HIT/MR-Class (no license), TRO-HIT/PyCRT (no license)

Status: dead link

[37652] doi:10.3390/genes14030740 [paper]

Transcriptional Profiling of Rat Prefrontal Cortex after Acute Inescapable Footshock Stress.

Journal: Genes

Status: data only

[37653] doi:10.3390/ijms24065753 [paper, repository]

Unraveling the Role of Antimicrobial Peptides in Insects.

Journal: International journal of molecular sciences

Authors' code: codes.bio/meta-iavp (no license)

Status: dead link

[37654] doi:10.3390/ijms24065771 [paper, data]

Combined Inhibition of Hedgehog and HDAC6: In Vitro and In Vivo Studies Reveal a New Role for Lysosomal Stress in Reducing Glioblastoma Cell Viability.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[37655] doi:10.3892/ijmm.2023.5236 [paper, data]

Smooth muscle cells, interstitial cells and neurons in the gallbladder (GB): Functional syncytium of electrical rhythmicity and GB motility (Review).

Journal: International journal of molecular medicine

Status: data only, 1 dataset cited

[37656] doi:10.7554/elife.68531 [paper, repository]

Multilayer brain networks can identify the epileptogenic zone and seizure dynamics.

Journal: eLife

Authors' code: data.mendeley.com/datasets/t8bvh5m8bp (no license)

Status: code verified

Thursday, 16 March 2023 (33 papers)

[37657] doi:10.1002/hbm.26256 [paper]

A spectral sampling algorithm in dynamic causal modelling for resting-state fMRI.

Journal: Human brain mapping

Status: code on request

[37658] doi:10.1007/s11764-023-01355-8 [paper, repository]

Symptom networks in glioma patients: understanding the multidimensionality of symptoms and quality of life.

Journal: Journal of cancer survivorship : research and practice

Authors' code: multinetlab-amsterdam/projects (MIT)

Status: code verified, 83 files readable, 5 matches

[37659] doi:10.1016/j.dcn.2023.101233 [paper]

The developmental trajectory of task-related frontal EEG theta/beta ratio in childhood.

Journal: Developmental cognitive neuroscience

Status: code on request

[37660] doi:10.1016/j.dib.2023.109060 [paper, data]

Chronic neuropathic pain: EEG data in eyes open and eyes closed with painDETECT and brief pain inventory reports.

Journal: Data in brief

Status: data only, 4 datasets cited

[37661] doi:10.1016/j.isci.2023.106424 [paper]

Temperature and sex shape Zika virus pathogenicity in the adult <i>Brat</i> ^{<i>cheesehead</i>} brain: A <i>Drosophila</i> model for virus-associated neurological diseases.

Journal: iScience

Status: code on request

[37662] doi:10.1021/acsomega.2c07993 [paper, data]

Synthesis and Biological Evaluation of Coumarin Triazoles as Dual Inhibitors of Cholinesterases and β-Secretase.

Journal: ACS omega

Status: data only, 3 datasets cited

[37663] doi:10.1038/s41467-023-37170-z [paper, data]

Quinolinate promotes macrophage-induced immune tolerance in glioblastoma through the NMDAR/PPARγ signaling axis.

Journal: Nature communications

Status: data only, 1 dataset cited

[37664] doi:10.1038/s41531-023-00479-z [paper, data]

MAPKAPK2, a potential dynamic network biomarker of α-synuclein prior to its aggregation in PD patients.

Journal: NPJ Parkinson's disease

Status: code on request, 1 dataset cited

[37665] doi:10.1038/s41562-023-01542-8 [paper, repository]

Structural and functional asymmetry of the neonatal cerebral cortex.

Journal: Nature human behaviour

Authors' code: metrics-lab/CorticalAsymmetry (no license), jelenabozek/SurfaceAtlasConstruction (no license), BioMedIA/dhcp-structural-pipeline (Apache-2.0), ecr05/dHCP_template_alignment (MIT), ecr05/msm_hocr (no license)

Status: code verified, 1,320 files readable, 11 matches

[37666] doi:10.1038/s41593-023-01285-9 [paper, repository]

Intermediate acoustic-to-semantic representations link behavioral and neural responses to natural sounds.

Journal: Nature neuroscience

Authors' code: doi:10.5061/dryad.0p2ngf258 (no license)

Status: code verified

[37667] doi:10.1038/s41598-023-31365-6 [paper, repository]

Critically synchronized brain waves form an effective, robust and flexible basis for human memory and learning.

Journal: Scientific reports

Authors' code: zalandoresearch/fashion-mnist (MIT)

Status: code verified, 14 files readable

[37668] doi:10.1073/pnas.2215752120 [paper, repository]

Strong connectivity in real directed networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: nrodgers1/Strong-Connectivity-in-Real-Networks (no license)

Status: code verified, 4 files readable

[37669] doi:10.1073/pnas.2216030120 [paper, repository]

Network inference from short, noisy, low time-resolution, partial measurements: Application to <i>C. elegans</i> neuronal calcium dynamics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: banerjeeamitava/Neuronal-Network-Inference-with-Reservoir-Computer (MIT)

Status: code verified, 3 files readable, 1 match

[37670] doi:10.1073/pnas.2300769120 [paper]

EMBER multidimensional spectral microscopy enables quantitative determination of disease- and cell-specific amyloid strains.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[37671] doi:10.1101/2023.03.15.532836 [paper, repository]

Bipartite invariance in mouse primary visual cortex

Journal: bioRxiv (preprint)

Authors' code: cajal/microns-vei-2025 (MIT)

Status: code verified, 62 files readable

[37672] doi:10.1177/0271678x231164423 [paper]

Superior sagittal sinus flow as a proxy for tracking global cerebral blood flow dynamics during wakefulness and sleep.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: code on request

[37673] doi:10.1371/journal.pone.0282885 [paper, data]

Investigating the influence of masker and target properties on the dynamics of perceptual awareness under informational masking.

Journal: PloS one

Status: data only, 1 dataset cited

[37674] doi:10.15252/embr.202255641 [paper, repository]

FAM69C functions as a kinase for eIF2α and promotes stress granule assembly.

Journal: EMBO reports

Authors' code: ebi.ac.uk/pride/archive (no license)

Status: code verified

[37675] doi:10.3389/fmicb.2023.1094071 [paper, repository]

Influence of mental health medication on microbiota in the elderly population in the Valencian region.

Journal: Frontiers in microbiology

Authors' code: borenstein-lab/robustness (GPL-3.0)

Status: code verified, 9 files readable

[37676] doi:10.3389/fnbeh.2023.1139205 [paper, repository]

Environmental enrichment promotes resilience to neuropathic pain-induced depression and correlates with decreased excitability of the anterior cingulate cortex.

Journal: Frontiers in behavioral neuroscience

Authors' code: marioaacuna/in-vitro-ephys (no license)

Status: code verified, 50 files readable

[37677] doi:10.3389/fnins.2023.1148176 [paper, repository]

Brain system segregation and pain catastrophizing in chronic pain progression.

Journal: Frontiers in neuroscience

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 3 matches

[37678] doi:10.3389/fphar.2023.1120360 [paper, data]

Diclofenac and other non-steroidal anti-inflammatory drugs (NSAIDs) are competitive antagonists of the human P2X3 receptor.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[37679] doi:10.3389/fpsyt.2023.1143328 [paper, data]

CTNNB1 in neurodevelopmental disorders.

Journal: Frontiers in psychiatry

Status: data only, 3 datasets cited

[37680] doi:10.3390/diagnostics13061122 [paper, repository]

KCS-FCnet: Kernel Cross-Spectral Functional Connectivity Network for EEG-Based Motor Imagery Classification.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: UN-GCPDS/python-gcpds.databases (BSD-2-Clause), UN-GCPDS/python-gcpds.visualizations (BSD-2-Clause), kaggle.com/dggarciam94/eegnet-11-11-2022-version (no license), kaggle.com/dggarciam94/shallownet-11-11-2022-version (no license), kaggle.com/dggarciam94/deepconvnet-11-11-2022-version (no license), kaggle.com/dggarciam94/tcnet-fusion-11-11-2022-version (no license), kaggle.com/code/dggarciam94 (no license)

Status: code verified, 44 files readable

[37681] doi:10.3390/diagnostics13061132 [paper, repository]

Uncertainty-Aware Deep Learning Classification of Adamantinomatous Craniopharyngioma from Preoperative MRI.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: lericnet/bsi-acp-mri (no license)

Status: code verified, 22 files readable, 4 matches

[37682] doi:10.3390/ijms24065697 [paper, data]

Integrin β3-Mediated Cell Senescence Associates with Gut Inflammation and Intestinal Degeneration in Models of Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[37683] doi:10.3390/jdb11010013 [paper, data]

COMMD10 Is Essential for Neural Plate Development during Embryogenesis.

Journal: Journal of developmental biology

Status: data only, 1 dataset cited

[37684] doi:10.3390/molecules28062707 [paper, data]

Investigation of Newly Synthesized Bis-Acyl-Thiourea Derivatives of 4-Nitrobenzene-1,2-Diamine for Their DNA Binding, Urease Inhibition, and Anti-Brain-Tumor Activities.

Journal: Molecules (Basel, Switzerland)

Status: data only, 2 datasets cited

[37685] doi:10.3390/s23063171 [paper, repository]

An Integrated Machine Learning-Based Brain Computer Interface to Classify Diverse Limb Motor Tasks: Explainable Model.

Journal: Sensors (Basel, Switzerland)

Authors' code: hend1011/bci-dataset-classification- (no license)

Status: code verified, 19 files readable, 6 matches

[37686] doi:10.7554/elife.80663 [paper, repository]

Rapid learning of predictive maps with STDP and theta phase precession.

Journal: eLife

Authors' code: TomGeorge1234/STDP-SR (no license)

Status: code verified, 8 files readable, 6 matches

[37687] doi:10.7554/elife.80671 [paper, repository]

Learning predictive cognitive maps with spiking neurons during behavior and replays.

Journal: eLife

Authors' code: jacopobono/learning_cognitive_maps_code (no license)

Status: code verified, 9 files readable, 2 matches

[37688] doi:10.7554/elife.80680 [paper, repository]

Neural learning rules for generating flexible predictions and computing the successor representation.

Journal: eLife

Authors' code: chingf/sr-project (no license)

Status: code verified, 113 files readable, 5 matches

[37689] doi:10.7717/peerj.15096 [paper, repository]

An <i>in silico</i> approach to the identification of diagnostic and prognostic markers in low-grade gliomas.

Journal: PeerJ

Authors' code: zhangyuqing/ComBat-seq (no license)

Status: code verified, 11 files readable, 1 match

Wednesday, 15 March 2023 (30 papers)

[37690] doi:10.1002/hbm.26266 [paper]

Heterogeneous brain dynamic functional connectivity patterns in first-episode drug-naive patients with major depressive disorder.

Journal: Human brain mapping

Status: code on request

[37691] doi:10.1007/s10886-023-01417-2 [paper, repository]

Identification of a Female-Produced Sex Attractant Pheromone of the Winter Firefly, Photinus corruscus Linnaeus (Coleoptera: Lampyridae).

Journal: Journal of chemical ecology

Authors' code: selower.github.io/winter_firefly_pheromone_project (no license)

Status: code verified

[37692] doi:10.1016/j.celrep.2023.112246 [paper, repository]

Geometric transformation of cognitive maps for generalization across hippocampal-prefrontal circuits.

Journal: Cell reports

Authors' code: JadhavLab/GeometricTransformation (Apache-2.0)

Status: code verified, 36 files readable, 17 matches

[37693] doi:10.1016/j.dcn.2023.101229 [paper, repository]

Adolescent neurodevelopment and psychopathology: The interplay between adversity exposure and genetic risk for accelerated brain ageing.

Journal: Developmental cognitive neuroscience

Authors' code: ThomasYeoLab/CBIG (MIT), rotman-baycrest.on.ca/index.php (no license), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 2,007 files readable

[37694] doi:10.1016/j.dcn.2023.101231 [paper, repository]

Polyneuro risk scores capture widely distributed connectivity patterns of cognition.

Journal: Developmental cognitive neuroscience

Authors' code: polyneuro-risk-score.readthedocs.io (no license), Zenodo 7697404 (other-open), dcan-labs/biceps (BSD-3-Clause)

Status: code verified, 188 files readable, 1 match

[37695] doi:10.1016/j.neuroimage.2023.120029 [paper, repository]

Stimulating human prefrontal cortex increases reward learning.

Journal: NeuroImage

Authors' code: OSF av9pf (no license)

Status: code verified, 8 files readable, 1 match

[37696] doi:10.1016/j.nicl.2023.103377 [paper, repository]

Neurovascular coupling is preserved in chronic stroke recovery after targeted photothrombosis.

Journal: NeuroImage. Clinical

Authors' code: BUNPC/NeurovascularCouplingStroke (no license)

Status: code verified, 32 files readable, 6 matches

[37697] doi:10.1016/j.ynirp.2023.100164 [paper, repository]

Neural processing of goal and non-goal-directed movements on the smartphone.

Journal: Neuroimage. Reports

Authors' code: CODELABLEIDEN/Non_goal_directed_smartphone_2022 (MIT)

Status: code verified, 68 files readable, 9 matches

[37698] doi:10.1038/s41467-023-37088-6 [paper, repository]

Complexity of cortical wave patterns of the wake mouse cortex.

Journal: Nature communications

Authors' code: BrainDynamicsUSYD/NeuroPattToolbox (GPL-3.0), MianxinLiu/Complexity-of-cortical-wave-patterns-of-the-mouse-cortex (GPL-3.0), Zenodo 7497560 (other-open)

Status: code verified, 184 files readable, 14 matches

[37699] doi:10.1038/s41586-023-05795-1 [paper, repository]

Spatial epigenome-transcriptome co-profiling of mammalian tissues.

Journal: Nature

Authors' code: di-0579/Spatial_epigenome-transcriptome_co-sequencing (no license), Zenodo 7395313 (other-open)

Status: code verified, 18 files readable, 6 matches

[37700] doi:10.1038/s41586-023-05828-9 [paper, repository]

Fast and sensitive GCaMP calcium indicators for imaging neural populations.

Journal: Nature

Authors' code: ilyakolb/jGCaMP8-neuron-culture-screen (no license), zqwei/Spike2Fluorescence_jGCaMP8 (MIT), rozmar/jGCaMP8_ground_truth_dataset (no license)

Status: code verified, 32 files readable, 19 matches

[37701] doi:10.1038/s41598-023-31288-2 [paper, repository]

IntelliSleepScorer, a software package with a graphic user interface for automated sleep stage scoring in mice based on a light gradient boosting machine algorithm.

Journal: Scientific reports

Authors' code: broadinstitute/IntelliSleepScorer (no license)

Status: code verified, 5 files readable, 1 match

[37702] doi:10.1038/s42003-023-04628-1 [paper, repository]

Anterior cingulate and medial prefrontal cortex oscillations underlie learning alterations in trait anxiety in humans.

Journal: Communications biology

Authors' code: OSF wsjgk (no license), bernspitz/convolution-models-MEEG (no license)

Status: code verified, 20 files readable, 4 matches

[37703] doi:10.1088/1741-2552/acbe1e [paper, repository]

Calcium imaging and analysis of the jugular-nodose ganglia enables identification of distinct vagal sensory neuron subsets.

Journal: Journal of neural engineering

Authors' code: Eric-H-Chang/calcium-imaging (BSD-3-Clause)

Status: code verified, 4 files readable, 4 matches

[37704] doi:10.1101/gad.350211.122 [paper, data]

ALOX5-mediated ferroptosis acts as a distinct cell death pathway upon oxidative stress in Huntington's disease.

Journal: Genes & development

Status: data only, 11 datasets cited

[37705] doi:10.1172/jci159103 [paper, data]

Preclinical and clinical evidence for suppression of alcohol intake by apremilast.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[37706] doi:10.1186/s13024-023-00608-5 [paper, data]

The era of cryptic exons: implications for ALS-FTD.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[37707] doi:10.1186/s41232-023-00257-7 [paper, data]

Increased neutrophils in inflammatory bowel disease accelerate the accumulation of amyloid plaques in the mouse model of Alzheimer's disease.

Journal: Inflammation and regeneration

Status: data only, 1 dataset cited

[37708] doi:10.1242/dev.199832 [paper, repository]

Axon-axon interactions determine modality-specific wiring and subcellular synaptic specificity in a somatosensory circuit.

Journal: Development (Cambridge, England)

Authors' code: thomasbkahn/blinder_script (MIT)

Status: empty repository, 2 files readable

[37709] doi:10.1371/journal.pone.0282565 [paper, data]

The accuracy of the Stroke Risk Analysis (SRA) system for predicting atrial fibrillation in patients in the postoperative period of myocardial revascularization.

Journal: PloS one

Status: data only, 1 dataset cited

[37710] doi:10.3389/fimmu.2023.1103097 [paper, data]

The clusterin connectome: Emerging players in chondrocyte biology and putative exploratory biomarkers of osteoarthritis.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[37711] doi:10.3389/fncel.2023.895017 [paper]

Soluble TNF mediates amyloid-independent, diet-induced alterations to immune and neuronal functions in an Alzheimer's disease mouse model.

Journal: Frontiers in cellular neuroscience

Status: data only

[37712] doi:10.3389/fnhum.2023.1146789 [paper, data]

Measuring brain potentials of imagination linked to physiological needs and motivational states.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[37713] doi:10.3389/fninf.2023.1123376 [paper, data]

Novel methods for elucidating modality importance in multimodal electrophysiology classifiers.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[37714] doi:10.3389/fnins.2023.978527 [paper, repository]

Minimizing the distortions in electrophysiological source imaging of cortical oscillatory activity <i>via</i> Spectral Structured Sparse Bayesian Learning.

Journal: Frontiers in neuroscience

Authors' code: CCC-members/MEGvsSimulated-EEG (no license), CCC-members/ECoGvsEEG (no license)

Status: code verified, 70 files readable

[37715] doi:10.3389/fpsyt.2023.1080668 [paper, repository]

Simulating developmental diversity: Impact of neural stochasticity on atypical flexibility and hierarchy.

Journal: Frontiers in psychiatry

Authors' code: ncnp-cpsy/SimulatingDevelopmentalDiversity (BSD-3-Clause)

Status: code verified, 26 files readable, 1 match

[37716] doi:10.3390/bioengineering10030361 [paper, data]

Prediction of Cognitive Load from Electroencephalography Signals Using Long Short-Term Memory Network.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[37717] doi:10.3390/cells12060897 [paper, data]

Advanced Bioinformatics Analysis and Genetic Technologies for Targeting Autophagy in Glioblastoma Multiforme.

Journal: Cells

Status: data only, 7 datasets cited

[37718] doi:10.3390/ijms24065651 [paper, data]

Shared Genes of <i>PPARG</i> and <i>NOS2</i> in Alzheimer's Disease and Ulcerative Colitis Drive Macrophages and Microglia Polarization: Evidence from Bioinformatics Analysis and Following Validation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[37719] doi:10.38212/2224-6614.3446 [paper, data]

Erinacine S from Hericium erinaceus mycelium promotes neuronal regeneration by inducing neurosteroids accumulation.

Journal: Journal of food and drug analysis

Status: data only, 1 dataset cited

Tuesday, 14 March 2023 (26 papers)

[37720] doi:10.1002/brb3.2940 [paper]

Progressive alterations in white matter microstructure across the timecourse of Huntington's disease.

Journal: Brain and behavior

Status: code on request

[37721] doi:10.1002/brb3.2948 [paper, repository]

Using functional near-infrared spectroscopy to measure prefrontal cortex activity during dual-task walking and navigated walking: A feasibility study.

Journal: Brain and behavior

Authors' code: OSF f4p3d (no license)

Status: code verified, 10 files readable, 2 matches

[37722] doi:10.1007/s10548-023-00951-2 [paper, data]

Event-Related Potentials Index Prediction Error Signalling During Perceptual Processing of Emotional Facial Expressions.

Journal: Brain topography

Status: data only, 1 dataset cited

[37723] doi:10.1016/j.celrep.2023.112237 [paper, data]

Jarid2 promotes temporal progression of retinal progenitors via repression of Foxp1.

Journal: Cell reports

Status: data only, 1 dataset cited

[37724] doi:10.1016/j.cub.2023.02.051 [paper]

Volume-transmitted GABA waves pace epileptiform rhythms in the hippocampal network.

Journal: Current biology : CB

Status: code on request

[37725] doi:10.1016/j.ejro.2023.100484 [paper, data]

Optimizing MRI-based brain tumor classification and detection using AI: A comparative analysis of neural networks, transfer learning, data augmentation, and the cross-transformer network.

Journal: European journal of radiology open

Status: data only, 1 dataset cited

[37726] doi:10.1016/j.isci.2023.106351 [paper, repository]

Intrinsic theta oscillation in the attractor network of grid cells.

Journal: iScience

Authors' code: NJUTBP/Intrinsic_Theta_Oscillation_Grid_Cell_Network (no license)

Status: code verified, 8 files readable, 3 matches

[37727] doi:10.1016/j.neuron.2023.02.022 [paper]

Bilirubin gates the TRPM2 channel as a direct agonist to exacerbate ischemic brain damage.

Journal: Neuron

Status: code on request

[37728] doi:10.1038/s41598-023-31094-w [paper, repository]

EXPLORE: a novel deep learning-based analysis method for exploration behaviour in object recognition tests.

Journal: Scientific reports

Authors' code: Wahl-lab/EXPLORE (MIT)

Status: code verified, 29 files readable, 2 matches

[37729] doi:10.1038/s41598-023-31180-z [paper, repository]

Visualizing genomic characteristics across an RNA-Seq based reference landscape of normal and neoplastic brain.

Journal: Scientific reports

Authors' code: AlexsLemonade/OpenPBTA-analysis (CC-BY-4.0)

Status: code verified, 328 files readable, 12 matches

[37730] doi:10.1038/s42003-023-04655-y [paper, data]

Mir125b-2 imprinted in human but not mouse brain regulates hippocampal function and circuit in mice.

Journal: Communications biology

Status: data only, 1 dataset cited

[37731] doi:10.1186/s12873-023-00794-x [paper, data]

Prehospital clinical practice guidelines for unintentional injuries: a scoping review and prioritisation process.

Journal: BMC emergency medicine

Status: data only, 1 dataset cited

[37732] doi:10.1186/s12920-023-01479-x [paper, data]

Differential expression of pyroptosis-related genes in the hippocampus of patients with Alzheimer's disease.

Journal: BMC medical genomics

Status: data only, 15 datasets cited

[37733] doi:10.1186/s12964-023-01072-w [paper, data]

Therapeutic potential of ADAM10 modulation in Alzheimer's disease: a review of the current evidence.

Journal: Cell communication and signaling : CCS

Status: data only, 3 datasets cited

[37734] doi:10.1186/s13195-023-01182-0 [paper, repository]

Mechanism of action deconvolution of the small-molecule pathological tau aggregation inhibitor Anle138b.

Journal: Alzheimer's research & therapy

Authors' code: BenderGroup/PIDGINv4 (GPL-3.0)

Status: code verified, 15 files readable, 2 matches

[37735] doi:10.1371/journal.pbio.3002031 [paper, repository]

Individuals with problem gambling and obsessive-compulsive disorder learn through distinct reinforcement mechanisms.

Journal: PLoS biology

Authors' code: OSF v7em5 (no license)

Status: code verified, 25 files readable

[37736] doi:10.1371/journal.pgen.1010665 [paper, repository]

A sleep-active neuron can promote survival while sleep behavior is disturbed.

Journal: PLoS genetics

Authors' code: ibusack/a-sleep-active-neuron-can-promote-survival-while-sleep-behavior-is-disturbed (no license)

Status: code verified, 5 files readable, 1 match

[37737] doi:10.3389/fnins.2023.1108059 [paper, data]

A RUSBoosted tree method for k-complex detection using tunable Q-factor wavelet transform and multi-domain feature extraction.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37738] doi:10.3390/cancers15061767 [paper, data]

Combining CNN Features with Voting Classifiers for Optimizing Performance of Brain Tumor Classification.

Journal: Cancers

Status: data only, 1 dataset cited

[37739] doi:10.3390/ijms24065555 [paper]

Adaptive Stimulations in a Biophysical Network Model of Parkinson's Disease.

Journal: International journal of molecular sciences

Status: code on request

[37740] doi:10.3758/s13414-023-02681-w [paper]

Contralateral delay activity, but not alpha lateralization, indexes prioritization of information for working memory storage.

Journal: Attention, perception & psychophysics

Status: code on request

[37741] doi:10.7554/elife.79541 [paper, repository]

Emergence of time persistence in a data-driven neural network model.

Journal: eLife

Authors' code: gin.g-node.org/debregeas/zf_artr_thermo (CC0-1.0), SebastWolf/ZF_ARTR_thermo (no license), guillaumelegoc/arduino-temperature-control (GPL-3.0), johnbarton/ACE (MIT)

Status: code verified, 100 files readable, 4 matches

[37742] doi:10.7554/elife.81446 [paper, repository]

Beta oscillations and waves in motor cortex can be accounted for by the interplay of spatially structured connectivity and fluctuating inputs.

Journal: eLife

Authors' code: LKANG777/Beta-Oscillation (MIT)

Status: code verified, 5 files readable, 10 matches

[37743] doi:10.7554/elife.82301 [paper, repository]

A model of hippocampal replay driven by experience and environmental structure facilitates spatial learning.

Journal: eLife

Authors' code: Zenodo 5741291 (no license), sencheng/-Mechanisms-and-Functions-of-Hippocampal-Replay (GPL-3.0), sencheng/cobel-rl (GPL-3.0)

Status: code verified, 211 files readable, 23 matches

[37744] doi:10.7554/elife.82916 [paper, repository]

Neural circuits underlying habituation of visually evoked escape behaviors in larval zebrafish.

Journal: eLife

Authors' code: halehfoto/Fotowat_Engert_eLife_Code (GPL-3.0)

Status: code verified, 23 files readable, 3 matches

[37745] doi:10.7759/cureus.36129 [paper, data]

SOX9 Expression Is Increased in Alzheimer's Disease (AD) and Is Associated With Disease Progression and APOE4 Genotype: A Computational Approach.

Journal: Cureus

Status: data only, 1 dataset cited

Monday, 13 March 2023 (33 papers)

[37746] doi:10.1016/j.cub.2023.02.039 [paper, repository]

Sex-dependent control of pheromones on social organization within groups of wild house mice.

Journal: Current biology : CB

Authors' code: jalapic/compete (no license)

Status: code verified, 25 files readable

[37747] doi:10.1016/j.jshs.2023.03.003 [paper, repository]

Machine-learning-based head impact subtyping based on the spectral densities of the measurable head kinematics.

Journal: Journal of sport and health science

Authors' code: xzhan96-stf/kinematics_classifier (Apache-2.0)

Status: code verified, 6 files readable, 2 matches

[37748] doi:10.1016/j.molcel.2023.02.011 [paper, repository]

Massively parallel characterization of CRISPR activator efficacy in human induced pluripotent stem cells and neurons.

Journal: Molecular cell

Authors' code: Zenodo 7650425 (other-open), qianxinw/chrom_crispr (no license)

Status: code verified, 18 files readable, 7 matches

[37749] doi:10.1016/j.ynirp.2023.100163 [paper, repository]

Population modeling with machine learning can enhance measures of mental health - Open-data replication.

Journal: Neuroimage. Reports

Authors' code: KamalakerDadi/empirical_proxy_measures (BSD-3-Clause), cmccomb/rand_index (BSD-3-Clause), PersonomicsLab/popmodel_ML_MH (MIT)

Status: code verified, 201 files readable, 8 matches

[37750] doi:10.1021/acsomega.3c00441 [paper]

Design and Computational Analysis of an MMP9 Inhibitor in Hypoxia-Induced Glioblastoma Multiforme.

Journal: ACS omega

Status: data only

[37751] doi:10.1021/jasms.2c00341 [paper, data]

Cerebrospinal Fluid and Brain Proteoforms of the Granin Neuropeptide Family in Alzheimer's Disease.

Journal: Journal of the American Society for Mass Spectrometry

Status: data only, 1 dataset cited

[37752] doi:10.1038/s41398-023-02393-7 [paper, repository]

Mouse mutants in schizophrenia risk genes GRIN2A and AKAP11 show EEG abnormalities in common with schizophrenia patients.

Journal: Translational psychiatry

Authors' code: tortlab/phase-amplitude-coupling (no license)

Status: code verified, 5 files readable

[37753] doi:10.1038/s41598-023-30953-w [paper, repository]

Fiber enhancement and 3D orientation analysis in label-free two-photon fluorescence microscopy.

Journal: Scientific reports

Authors' code: lens-biophotonics/Foa3D (MIT), Zenodo 7181945 (CC-BY-4.0)

Status: code verified, 17 files readable, 11 matches

[37754] doi:10.1038/s41598-023-31146-1 [paper, data]

Exposure to hate speech deteriorates neurocognitive mechanisms of the ability to understand others' pain.

Journal: Scientific reports

Status: data only, 3 datasets cited

[37755] doi:10.1038/s42003-023-04580-0 [paper, repository]

Simulations approaching data: cortical slow waves in inferred models of the whole hemisphere of mouse.

Journal: Communications biology

Authors' code: APE-group/CorticalSW_Inference (no license)

Status: code verified, 94 files readable, 5 matches

[37756] doi:10.1088/1741-2552/acbf79 [paper, repository]

Modeling extracellular stimulation of retinal ganglion cells: theoretical and practical aspects.

Journal: Journal of neural engineering

Authors' code: Kathleen-Kish/Retinal_Ganglion_Cell (no license)

Status: code verified, 10 files readable, 11 matches

[37757] doi:10.1096/fba.2022-00141 [paper, data]

Targeting XBP1 mRNA splicing sensitizes glioblastoma to chemotherapy.

Journal: FASEB bioAdvances

Status: data only, 1 dataset cited

[37758] doi:10.1111/cns.14144 [paper, repository]

Diversity in verbal fluency performance and its associations with MRI-informed brain age matrices in normal ageing and neurocognitive disorders.

Journal: CNS neuroscience & therapeutics

Authors' code: hannabrainscience/Brain-age-prediction (no license)

Status: empty repository, 1 file readable

[37759] doi:10.1111/cpr.13447 [paper, data]

Endothelial Arid1a deletion disrupts the balance among angiogenesis, neurogenesis and gliogenesis in the developing brain.

Journal: Cell proliferation

Status: data only, 1 dataset cited

[37760] doi:10.1186/s12885-023-10714-8 [paper, data]

A novel cuproptosis-related gene signature to predict prognosis in Glioma.

Journal: BMC cancer

Status: data only, 7 datasets cited

[37761] doi:10.1186/s12920-023-01458-2 [paper, data]

Identification of immune cells infiltrating in hippocampus and key genes associated with Alzheimer's disease.

Journal: BMC medical genomics

Status: data only, 2 datasets cited

[37762] doi:10.1186/s12974-023-02747-4 [paper, data]

IL-1β and TNF-α play an important role in modulating the risk of periodontitis and Alzheimer's disease.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[37763] doi:10.1186/s12974-023-02751-8 [paper, data]

TGF-β1 signalling in Alzheimer's pathology and cytoskeletal reorganization: a specialized Tau perspective.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

[37764] doi:10.1186/s13195-023-01185-x [paper]

Exploring the ATN classification system using brain morphology.

Journal: Alzheimer's research & therapy

Status: code on request

[37765] doi:10.1186/s41065-023-00272-1 [paper]

SMPD1 expression profile and mutation landscape help decipher genotype-phenotype association and precision diagnosis for acid sphingomyelinase deficiency.

Journal: Hereditas

Status: data only

[37766] doi:10.1371/journal.pone.0276419 [paper, repository]

Topological data analysis of human brain networks through order statistics.

Journal: PloS one

Authors' code: laplcebeltrami/orderstat (no license)

Status: code verified, 18 files readable, 3 matches

[37767] doi:10.1523/eneuro.0289-22.2023 [paper, repository]

Capacity Limits Lead to Information Bottlenecks in Ongoing Rapid Motor Behaviors.

Journal: eNeuro

Authors' code: richard-moulton/Information-Bottlenecks-in-Rapid-Motor-Behaviour (GPL-3.0)

Status: code verified, 42 files readable, 9 matches

[37768] doi:10.1523/eneuro.0333-22.2023 [paper, repository]

Interaction between Theta Phase and Spike Timing-Dependent Plasticity Simulates Theta-Induced Memory Effects.

Journal: eNeuro

Authors' code: GP2789/Sync-deSync-model-TIME (no license)

Status: empty repository, 1 file readable

[37769] doi:10.1523/eneuro.0392-22.2023 [paper, data]

Allopregnanolone Effects on Inhibition in Hippocampal Parvalbumin Interneurons.

Journal: eNeuro

Status: data only, 1 dataset cited

[37770] doi:10.1523/jneurosci.1100-22.2023 [paper, repository]

Rhythm in the Premature Neonate Brain: Very Early Processing of Auditory Beat and Meter.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: mredalati/RhythmPretermNeonates (no license)

Status: code verified, 7 files readable, 2 matches

[37771] doi:10.3389/fncom.2023.1040629 [paper, repository]

A survey of neurophysiological differentiation across mouse visual brain areas and timescales.

Journal: Frontiers in computational neuroscience

Authors' code: gsaurabhr/npx_differentiation (no license)

Status: code verified, 12 files readable, 9 matches

[37772] doi:10.3389/fnimg.2023.1072927 [paper, repository]

Quality control procedures and metrics for resting-state functional MRI.

Journal: Frontiers in neuroimaging

Authors' code: rbirn/OpenQC (no license)

Status: empty repository, 1 file readable

[37773] doi:10.3389/fnins.2023.1137567 [paper, repository]

Broad learning for early diagnosis of Alzheimer's disease using FDG-PET of the brain.

Journal: Frontiers in neuroscience

Authors' code: YangLiuuuu/Extreme-Broad-Learning-System (GPL-2.0)

Status: code verified, 4 files readable

[37774] doi:10.3389/fnmol.2023.1123708 [paper]

Machine learning-based predictive models and drug prediction for schizophrenia in multiple programmed cell death patterns.

Journal: Frontiers in molecular neuroscience

Status: data only

[37775] doi:10.3390/antiox12030705 [paper, repository]

Ryanodine Receptor Mediated Calcium Release Contributes to Ferroptosis Induced in Primary Hippocampal Neurons by GPX4 Inhibition.

Journal: Antioxidants (Basel, Switzerland)

Authors' code: ignacio-vegavasquez/supplementary-information (no license)

Status: code verified, 5 files readable

[37776] doi:10.3390/brainsci13030483 [paper, repository]

An Analysis of Deep Learning Models in SSVEP-Based BCI: A Survey.

Journal: Brain sciences

Authors' code: DongcenXu/An-Analysis-of-Deep-Learning-Models-in-SSVEP-Based-BCI-A-Survey (no license)

Status: empty repository, 1 file readable

[37777] doi:10.3390/ijms24065456 [paper, repository]

Short-Term Effects of Human versus Bovine Sialylated Milk Oligosaccharide Microinjection on Zebrafish Larvae Survival, Locomotor Behavior and Gene Expression.

Journal: International journal of molecular sciences

Authors' code: vsbuffalo/scythe (MIT), code.google.com/p/rna-star (no license)

Status: code verified, 13 files readable

[37778] doi:10.7554/elife.85082 [paper, repository]

Evidence for embracing normative modeling.

Journal: eLife

Authors' code: predictive-clinical-neuroscience/braincharts (GPL-3.0), saigerutherford/evidence_embracing_nm (no license), pcnportal.dccn.nl (no license), Zenodo 5207839 (no license)

Status: code verified, 12 files readable, 4 matches

Sunday, 12 March 2023 (3 papers)

[37779] doi:10.1016/j.neuroimage.2023.120010 [paper, repository]

Homotopic local-global parcellation of the human cerebral cortex from resting-state functional connectivity.

Journal: NeuroImage

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 5 matches

[37780] doi:10.3390/cancers15061728 [paper, data]

Genomics of Breast Cancer Brain Metastases: A Meta-Analysis and Therapeutic Implications.

Journal: Cancers

Status: data only, 1 dataset cited

[37781] doi:10.3390/ijerph20065000 [paper, data]

ECG-Based Semi-Supervised Anomaly Detection for Early Detection and Monitoring of Epileptic Seizures.

Journal: International journal of environmental research and public health

Status: data only, 1 dataset cited

Saturday, 11 March 2023 (10 papers)

[37782] doi:10.1016/j.expneurol.2023.114379 [paper]

The original strain of SARS-CoV-2, the Delta variant, and the Omicron variant infect microglia efficiently, in contrast to their inability to infect neurons: Analysis using 2D and 3D cultures.

Journal: Experimental neurology

Status: data only

[37783] doi:10.1016/j.nicl.2023.103373 [paper, repository]

Neuroinflammation and amyloid deposition in the progression of mixed Alzheimer and vascular dementia.

Journal: NeuroImage. Clinical

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable

[37784] doi:10.1016/j.pneurobio.2023.102433 [paper, repository]

Microsaccades transiently lateralise EEG alpha activity.

Journal: Progress in neurobiology

Authors' code: doi:10.5061/dryad.sk8rb66 (no license), BaiweiLiu/spontaneousMicrosaccade_EEGAlpha (no license)

Status: code verified, 13 files readable, 3 matches

[37785] doi:10.1038/s41398-023-02387-5 [paper, repository]

The genetic architecture of human amygdala volumes and their overlap with common brain disorders.

Journal: Translational psychiatry

Authors' code: r-project.org (no license), cog-genomics.org/plink (no license), mathgen.stats.ox.ac.uk/impute/impute_v2.html (no license), imputationserver.sph.umich.edu (no license), precimed/mostest (GPL-3.0), ebi.ac.uk/gwas (no license), biit.cs.ut.ee/gprofiler/gost (no license), bulik/ldsc (GPL-3.0), lukejoconnor/LCV (no license), precimed/pleiofdr (GPL-3.0)

Status: code verified, 113 files readable, 6 matches

[37786] doi:10.1038/s41467-023-36935-w [paper]

Mammalian-brain-inspired neuromorphic motion-cognition nerve achieves cross-modal perceptual enhancement.

Journal: Nature communications

Status: code on request

[37787] doi:10.1038/s41467-023-37040-8 [paper, data]

Cryo-EM structures of human Cx36/GJD2 neuronal gap junction channel.

Journal: Nature communications

Status: data only, 13 datasets cited

[37788] doi:10.1038/s41531-023-00474-4 [paper]

DBS-evoked cortical responses index optimal contact orientations and motor outcomes in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[37789] doi:10.1038/s41598-022-21905-x [paper, repository]

Individualized precision targeting of dorsal attention and default mode networks with rTMS in traumatic brain injury-associated depression.

Journal: Scientific reports

Authors' code: OSF vjddq (no license)

Status: empty repository

[37790] doi:10.1186/s12974-023-02756-3 [paper, data]

HMGB1 mediates synaptic loss and cognitive impairment in an animal model of sepsis-associated encephalopathy.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[37791] doi:10.1186/s40478-023-01534-9 [paper, data]

Different MAPT haplotypes influence expression of total MAPT in postmortem brain tissue.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

Friday, 10 March 2023 (25 papers)

[37792] doi:10.1002/hbm.26259 [paper, repository]

High spatial overlap but diverging age-related trajectories of cortical magnetic resonance imaging markers aiming to represent intracortical myelin and microstructure.

Journal: Human brain mapping

Authors' code: CoBrALab/cortical_markers_paper (no license)

Status: code verified, 100 files readable, 6 matches

[37793] doi:10.1002/hbm.26267 [paper, repository]

Optic radiations representing different eccentricities age differently.

Journal: Human brain mapping

Authors' code: yeatmanlab/pyAFQ (BSD-2-Clause), 36000/OR_aging_ukbb (no license)

Status: code verified, 137 files readable, 3 matches

[37794] doi:10.1002/hbm.26271 [paper, repository]

Trajectories of brain volumes in young children are associated with maternal education.

Journal: Human brain mapping

Authors' code: cran.r-project.org/package=fdapace (no license)

Status: code verified

[37795] doi:10.1002/jcsm.13204 [paper, data]

Longitudinal transcriptomic analysis of mouse sciatic nerve reveals pathways associated with age-related muscle pathology.

Journal: Journal of cachexia, sarcopenia and muscle

Status: data only, 8 datasets cited

[37796] doi:10.1016/j.ebiom.2023.104484 [paper, data]

Metformin and simvastatin exert additive antitumour effects in glioblastoma via senescence-state: clinical and translational evidence.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[37797] doi:10.1016/j.ebiom.2023.104511 [paper, repository]

The complex genetic architecture of Alzheimer's disease: novel insights and future directions.

Journal: EBioMedicine

Authors' code: sjfandrews/ADGenetics (MIT)

Status: code verified, 32 files readable, 7 matches

[37798] doi:10.1016/j.patter.2023.100705 [paper, repository]

Leveraging quantum computing for dynamic analyses of logical networks in systems biology.

Journal: Patterns (New York, N.Y.)

Authors' code: sysbio-bioinf/QuantumBooleanNetworks (Apache-2.0), Zenodo 7560006 (other-open)

Status: code verified, 38 files readable, 11 matches

[37799] doi:10.1038/s41467-023-36682-y [paper, repository]

Biomechanics and neural circuits for vestibular-induced fine postural control in larval zebrafish.

Journal: Nature communications

Authors' code: Zenodo 7583110 (CC-BY-4.0)

Status: code verified

[37800] doi:10.1038/s41467-023-37019-5 [paper, repository]

The dynamic nature of percolation on networks with triadic interactions.

Journal: Nature communications

Authors' code: Zenodo 7651480 (other-open), hanlinsun97/triadic-percolation (no license)

Status: code verified, 18 files readable, 4 matches

[37801] doi:10.1038/s41597-023-02002-8 [paper, repository]

Neonatal EEG graded for severity of background abnormalities in hypoxic-ischaemic encephalopathy.

Journal: Scientific data

Authors' code: otoolej/downsample_open_eeg (BSD-3-Clause), Zenodo 22734743 (BSD-3-Clause), Zenodo 22735014 (BSD-3-Clause), Zenodo 22734744 (BSD-3-Clause)

Status: code verified, 706 files readable, 6 matches

[37802] doi:10.1038/s41598-023-29704-8 [paper, data]

Neurofilament-light chain quantification by Simoa and Ella in plasma from patients with dementia: a comparative study.

Journal: Scientific reports

Status: data only, 2 datasets cited

[37803] doi:10.1038/s41598-023-31110-z [paper, repository]

Multitask computation through dynamics in recurrent spiking neural networks.

Journal: Scientific reports

Authors' code: Pugavkom/cgtasknet (MIT), Pugavkom/multy_task (MIT)

Status: code verified, 92 files readable, 2 matches

[37804] doi:10.1073/pnas.2207831120 [paper, data]

Propofol disrupts alpha dynamics in functionally distinct thalamocortical networks during loss of consciousness.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[37805] doi:10.1073/pnas.2210439120 [paper, repository]

A complete biomechanical model of <i>Hydra</i> contractile behaviors, from neural drive to muscle to movement.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hengjiwang/hydramuscle (no license)

Status: code verified, 88 files readable, 4 matches

[37806] doi:10.1088/2057-1976/acb1b3 [paper, data]

Can we explain machine learning-based prediction for rupture status assessments of intracranial aneurysms?

Journal: Biomedical physics & engineering express

Status: data only, 1 dataset cited

[37807] doi:10.1111/cas.15773 [paper, repository]

Single-cell RNA sequencing reveals tumor heterogeneity, microenvironment, and drug-resistance mechanisms of recurrent glioblastoma.

Journal: Cancer science

Authors' code: 1985wuhaibin/Haibingroup (no license), ngdc.cncb.ac.cn/gsa-human (no license)

Status: code verified

[37808] doi:10.1126/science.add9330 [paper, repository]

The connectome of an insect brain.

Journal: Science (New York, N.Y.)

Authors' code: Zenodo 4751181 (other-open), Zenodo 7473710 (other-open), Zenodo 7473718 (other-open), Zenodo 7474133 (other-open), Zenodo 20326853 (MIT), Zenodo 20326854 (MIT), schlegelp/navis (GPL-3.0), mwinding/connectome_tools (MIT), mwinding/connectome_analysis (MIT), neurodata/maggot_models (BSD-3-Clause)

Status: code verified, 1,327 files readable, 21 matches

[37809] doi:10.1186/s13195-023-01195-9 [paper, repository]

Assessment of Alzheimer-related pathologies of dementia using machine learning feature selection.

Journal: Alzheimer's research & therapy

Authors' code: mdrajab/CFAS-ranking-code (MIT), emmanueljammeh/cfas (no license)

Status: code verified, 7 files readable, 15 matches

[37810] doi:10.1186/s13229-023-00543-8 [paper, repository]

Atypical functional connectivity of temporal cortex with precuneus and visual regions may be an early-age signature of ASD.

Journal: Molecular autism

Authors' code: Yaqiongxiao/asdlanguage_rsfMRI (no license)

Status: empty repository, 1 file readable

[37811] doi:10.3389/fimmu.2023.1097880 [paper]

Epithelial-mesenchymal transition is the main way in which glioma-associated microglia/macrophages promote glioma progression.

Journal: Frontiers in immunology

Status: data only

[37812] doi:10.3389/fonc.2023.1098748 [paper, repository]

Construction of an individualized brain metabolic network in patients with advanced non-small cell lung cancer by the Kullback-Leibler divergence-based similarity method: A study based on 18F-fluorodeoxyglucose positron emission tomography.

Journal: Frontiers in oncology

Authors' code: mathworks.com/matlabcentral-/fileexchange (no license)

Status: dead link

[37813] doi:10.3390/biology12030431 [paper, data]

Upregulation of Sarcolemmal Hemichannels and Inflammatory Transcripts with Neuromuscular Junction Instability during Lower Limb Unloading in Humans.

Journal: Biology

Status: data only, 1 dataset cited

[37814] doi:10.3390/diagnostics13061053 [paper, data]

Non-Functional Jaw Muscular Activity in Patients with Disorders of Consciousness Revealed by A Long-Lasting Polygraphy.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[37815] doi:10.3390/ijms24065331 [paper, data]

Identification of CD114 Membrane Receptors as a Molecular Target in Medulloblastomas.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[37816] doi:10.7554/elife.81532 [paper, repository]

Rab10 regulates the sorting of internalised TrkB for retrograde axonal transport.

Journal: eLife

Authors' code: cleterrier/chrisluts (MIT), omlazo (no license), omlazo/imagej-macros (Unlicense), omlazo/r-scripts (no license), omlazo/kymoanalyzer (Unlicense)

Status: code verified, 6 files readable

Thursday, 9 March 2023 (31 papers)

[37817] doi:10.1002/hbm.26220 [paper, repository]

Cerebellar and subcortical atrophy contribute to psychiatric symptoms in frontotemporal dementia.

Journal: Human brain mapping

Authors' code: CoBrALab/twolevel_ants_dbm (other)

Status: code verified, 3 files readable, 1 match

[37818] doi:10.1007/s44192-023-00031-8 [paper, data]

Disease-specific differences in gene expression, mitochondrial function and mitochondria-endoplasmic reticulum interactions in iPSC-derived cerebral organoids and cortical neurons in schizophrenia and bipolar disorder.

Journal: Discover mental health

Status: data only, 1 dataset cited

[37819] doi:10.1016/j.cortex.2023.01.012 [paper, data]

Persistent prosopagnosia following COVID-19.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Status: data only, 2 datasets cited

[37820] doi:10.1016/j.cub.2023.02.029 [paper, repository]

Distinct hippocampal-prefrontal neural assemblies coordinate memory encoding, maintenance, and recall.

Journal: Current biology : CB

Authors' code: apfdomanski/Domanski_CurrentBiology_2023 (GPL-3.0), figshare 21944759 (GPL 3.0+)

Status: code verified, 566 files readable, 16 matches

[37821] doi:10.1016/j.dcn.2023.101228 [paper, repository]

Associations between multi-method latent factors of puberty and brain structure in adolescent girls.

Journal: Developmental cognitive neuroscience

Authors' code: Zenodo 7083177 (other-open), dsnlab/tag_puberty_w1 (no license)

Status: code verified, 26 files readable

[37822] doi:10.1016/j.neuron.2023.02.014 [paper, repository]

Neural knowledge assembly in humans and neural networks.

Journal: Neuron

Authors' code: lukas-braun/neural-knowledge-assembly (GPL-3.0), Zenodo 7579723 (other-open)

Status: code verified, 16 files readable, 10 matches

[37823] doi:10.1016/j.psj.2023.102635 [paper, data]

Research Note: Probiotic, Bacillus subtilis, alleviates neuroinflammation in the hippocampus via the gut microbiota-brain axis in heat-stressed chickens.

Journal: Poultry science

Status: data only, 2 datasets cited

[37824] doi:10.1038/s41467-023-36759-8 [paper, repository]

N-acetylneuraminic acid links immune exhaustion and accelerated memory deficit in diet-induced obese Alzheimer's disease mouse model.

Journal: Nature communications

Authors' code: naomihabiblab/HighFatDiet_in_AD (no license)

Status: code verified, 4 files readable, 2 matches

[37825] doi:10.1038/s41593-023-01272-0 [paper, repository]

Developmental trajectory of transmission speed in the human brain.

Journal: Nature neuroscience

Authors' code: MultimodalNeuroimagingLab/mnl_ccepBids (GPL-3.0)

Status: code verified, 380 files readable, 3 matches

[37826] doi:10.1038/s42003-023-04594-8 [paper, data]

Sustained overexpression of spliced X-box-binding protein-1 in neurons leads to spontaneous seizures and sudden death in mice.

Journal: Communications biology

Status: data only, 1 dataset cited

[37827] doi:10.1038/s43587-023-00373-6 [paper, repository]

Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types.

Journal: Nature aging

Authors' code: kmh005/rubin_parabiosis (no license)

Status: code verified, 2 files readable, 1 match

[37828] doi:10.1073/pnas.2214834120 [paper, data]

Larger cerebral cortex is genetically correlated with greater frontal area and dorsal thickness.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[37829] doi:10.1073/pnas.2218831120 [paper, repository]

Structures of brain-derived 42-residue amyloid-β fibril polymorphs with unusual molecular conformations and intermolecular interactions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ebi.ac.uk/emdb/28740 (no license), ebi.ac.uk/emdb/28741 (no license)

Status: code verified

[37830] doi:10.1073/pnas.2220012120 [paper, data]

A macrocyclic peptide inhibitor traps MRP1 in a catalytically incompetent conformation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[37831] doi:10.1101/2023.03.07.531437 [paper, data]

Spatiotemporal mapping of the contractile and adhesive forces sculpting early <i>C. elegans</i> embryos

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[37832] doi:10.1111/acel.13815 [paper, data]

The longevity response to warm temperature is neurally controlled via the regulation of collagen genes.

Journal: Aging cell

Status: data only, 1 dataset cited

[37833] doi:10.1111/bcp.15698 [paper, repository]

Anticholinergic burden in middle and older age is associated with lower cognitive function, but not with brain atrophy.

Journal: British journal of clinical pharmacology

Authors' code: JuM24/UKB-AChB-cognition-MRI (no license)

Status: code verified, 17 files readable, 4 matches

[37834] doi:10.1152/japplphysiol.00508.2022 [paper, data]

Multiomics profiling of the impact of an angiotensin (1-7)-expressing probiotic combined with exercise training in aged male rats.

Journal: Journal of applied physiology (Bethesda, Md. : 1985)

Status: code on request, 2 datasets cited

[37835] doi:10.1186/s12920-023-01471-5 [paper, repository]

Inflammation and neuronal gene expression changes differ in early versus late chronic traumatic encephalopathy brain.

Journal: BMC medical genomics

Authors' code: OSF guepa (no license)

Status: empty repository

[37836] doi:10.1371/journal.pone.0282587 [paper, repository]

Assessing the effects of therapeutic combinations on SARS-CoV-2 infected patient outcomes: A big data approach.

Journal: PloS one

Authors' code: hrmoradi/Therapeutics (no license)

Status: code verified, 5 files readable

[37837] doi:10.1371/journal.pone.0282810 [paper, repository]

A study of autoencoders as a feature extraction technique for spike sorting.

Journal: PloS one

Authors' code: ArdeleanRichard/SpikeSorting (no license), ArdeleanRichard/Autoencoders-in-Spike-Sorting (no license)

Status: code verified, 64 files readable, 6 matches

[37838] doi:10.3389/fninf.2023.1134405 [paper, repository]

CoBeL-RL: A neuroscience-oriented simulation framework for complex behavior and learning.

Journal: Frontiers in neuroinformatics

Authors' code: sencheng/CoBeL-RL (GPL-3.0), sencheng/CoBeL-RL-Paper-Simulations (no license)

Status: code verified, 129 files readable, 30 matches

[37839] doi:10.3389/fninf.2023.1154080 [paper, repository]

A neuroscientist's guide to using murine brain atlases for efficient analysis and transparent reporting.

Journal: Frontiers in neuroinformatics

Authors' code: Zenodo 7575515 (CC-BY-4.0)

Status: empty repository

[37840] doi:10.3389/fninf.2023.852105 [paper, repository]

Neural network-derived perfusion maps: A model-free approach to computed tomography perfusion in patients with acute ischemic stroke.

Journal: Frontiers in neuroinformatics

Authors' code: EIDOSLAB/Neural-Network-derived-perfusion-maps (no license)

Status: code verified, 12 files readable, 4 matches

[37841] doi:10.3389/fnins.2023.1125666 [paper, repository]

Identification for the cortical 3-Hinges folding pattern based on cortical morphological and structural features.

Journal: Frontiers in neuroscience

Authors' code: GuardianTree/code (no license)

Status: code verified, 107 files readable, 5 matches

[37842] doi:10.3389/fnut.2023.1116278 [paper, data]

Bioactive nutraceuticals oligo-lactic acid and fermented soy extract alleviate cognitive decline in mice in part <i>via</i> anti-neuroinflammation and modulation of gut microbiota.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[37843] doi:10.3389/frai.2023.1017204 [paper, repository]

She adapts to her student: An expert pragmatic speaker tailoring her referring expressions to the Layman listener.

Journal: Frontiers in artificial intelligence

Authors' code: claudiogreco/frontiers2023 (CC-BY-NC-ND-4.0)

Status: code verified, 55 files readable

[37844] doi:10.3390/metabo13030407 [paper, data]

Metabolic and Transcriptomic Changes in the Mouse Brain in Response to Short-Term High-Fat Metabolic Stress.

Journal: Metabolites

Status: data only, 1 dataset cited

[37845] doi:10.3390/s23062971 [paper, repository]

&lt;i&gt;MindReader&lt;/i&gt;: Unsupervised Classification of Electroencephalographic Data.

Journal: Sensors (Basel, Switzerland)

Authors' code: DanielRivasMD/MindReader (no license)

Status: dead link

[37846] doi:10.7554/elife.78877 [paper, data]

Disease-modifying effects of sodium selenate in a model of drug-resistant, temporal lobe epilepsy.

Journal: eLife

Status: data only, 1 dataset cited

[37847] doi:10.7554/elife.84740 [paper, repository]

Effects of clozapine-N-oxide and compound 21 on sleep in laboratory mice.

Journal: eLife

Authors' code: figshare 21507573 (CC-BY-4.0), figshare 21507576 (CC-BY-4.0)

Status: code verified, 11 files readable, 4 matches

Wednesday, 8 March 2023 (42 papers, 9 on this page)

[37848] doi:10.1016/j.brain.2023.100065 [paper, data]

Effects of stress-dependent growth on evolution of sulcal direction and curvature in models of cortical folding.

Journal: Brain multiphysics

Status: data only, 1 dataset cited

[37849] doi:10.1016/j.isci.2023.106358 [paper, repository]

Alterations in oligodendrocyte transcriptional networks reveal region-specific vulnerabilities to neurological disease.

Journal: iScience

Authors' code: alexdobin/STAR (MIT), cardiomoon/webr (no license), fogellab/multiWGCNA (no license), fogellab/region-specific-vulnerabilities (no license)

Status: code verified, 369 files readable, 5 matches

[37850] doi:10.1038/s41467-023-35908-3 [paper]

Tyrosyl-tRNA synthetase has a noncanonical function in actin bundling.

Journal: Nature communications

Status: code on request

[37851] doi:10.1038/s41467-023-36458-4 [paper, data]

Photocrosslinking-induced CRAC channel-like Orai1 activation independent of STIM1.

Journal: Nature communications

Status: data only, 1 dataset cited

[37852] doi:10.1038/s41467-023-36805-5 [paper, repository]

Flexible reuse of cortico-hippocampal representations during encoding and recall of naturalistic events.

Journal: Nature communications

Authors' code: zreagh/8vid (no license)

Status: code verified, 5 files readable

[37853] doi:10.1038/s41598-023-29547-3 [paper, data]

Persistent impacts of smoking on resting-state EEG in male chronic smokers and past-smokers with 20 years of abstinence.

Journal: Scientific reports

Status: data only, 1 dataset cited

[37854] doi:10.1038/s41598-023-30766-x [paper]

Neural correlates of gait adaptation in younger and older adults.

Journal: Scientific reports

Status: code on request

[37855] doi:10.1038/s41598-023-30796-5 [paper, repository]

Geosmin suppresses defensive behaviour and elicits unusual neural responses in honey bees.

Journal: Scientific reports

Authors' code: genn-team/genn (LGPL-2.1), tnowotny/bee_al_2021 (MIT)

Status: code verified, 275 files readable, 6 matches

[37856] doi:10.1038/s41598-023-30894-4 [paper, data]

Cognitive and plastic recurrent neural network clock model for the judgment of time and its variations.

Journal: Scientific reports

Status: data only, 1 dataset cited

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