Every paper, by date: page 170

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 170 of 200: 8 March 2023 to 28 February 2023.

Wednesday, 8 March 2023 (42 papers, 33 on this page)

[37857] doi:10.1093/braincomms/fcad058 [paper, data]

Default mode network failure and neurodegeneration across aging and amnestic and dysexecutive Alzheimer's disease.

Journal: Brain communications

Status: data only, 1 dataset cited

[37858] doi:10.1093/nc/niad003 [paper, repository]

Feeling ready: neural bases of prospective motor readiness judgements.

Journal: Neuroscience of consciousness

Authors' code: OSF dh8j9 (no license)

Status: code verified

[37859] doi:10.1098/rsob.220326 [paper, repository]

Polo-like kinase 1 promotes Cdc42-induced actin polymerization for asymmetric division in oocytes.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.6431786 (no license)

Status: code found, still to be checked

[37860] doi:10.1117/1.jbo.28.3.036002 [paper, repository]

Unrolled-DOT: an interpretable deep network for diffuse optical tomography.

Journal: Journal of biomedical optics

Authors' code: yyiz/Unrolled-DOT (no license)

Status: code verified, 39 files readable, 2 matches

[37861] doi:10.1117/1.nph.10.2.023515 [paper, data]

Using preregistration as a tool for transparent fNIRS study design.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[37862] doi:10.1126/sciadv.add1101 [paper, data]

Brain injury accelerates the onset of a reversible age-related microglial phenotype associated with inflammatory neurodegeneration.

Journal: Science advances

Status: data only, 2 datasets cited

[37863] doi:10.1126/sciadv.ade7996 [paper, data]

A cortical zoom-in operation underlies covert shifts of visual spatial attention.

Journal: Science advances

Status: data only, 1 dataset cited

[37864] doi:10.1162/nol_a_00088 [paper, repository]

Predictive Coding and Internal Error Correction in Speech Production.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: alexteghipco/MetaAnalysisResources (no license)

Status: code verified, 13 files readable

[37865] doi:10.1162/nol_a_00091 [paper, repository]

Right Posterior Temporal Cortex Supports Integration of Phonetic and Talker Information.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 6j7nr (no license)

Status: code verified, 29 files readable, 2 matches

[37866] doi:10.1162/nol_a_00093 [paper]

Spatiotemporal Dynamics of Activation in Motor and Language Areas Suggest a Compensatory Role of the Motor Cortex in Second Language Processing.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: code on request

[37867] doi:10.1186/s12883-023-03145-2 [paper, data]

Epidemiological and clinical characteristics predictive of ICU mortality of patients with traumatic brain injury treated at a trauma referral hospital - a cohort study.

Journal: BMC neurology

Status: data only, 1 dataset cited

[37868] doi:10.1186/s12887-023-03931-4 [paper, repository]

The burden of childhood and adolescent cancers in North Africa and the Middle East (NAME) region: findings from the Global Burden of Disease study 2019.

Journal: BMC pediatrics

Authors' code: ghdx.healthdata.org/gbd-2019/code (no license)

Status: code verified

[37869] doi:10.1186/s12915-023-01547-9 [paper, data]

Modality-specific sensory and decisional carryover effects in duration perception.

Journal: BMC biology

Status: data only, 1 dataset cited

[37870] doi:10.1186/s12974-023-02705-0 [paper]

Microglia/macrophages require vitamin D signaling to restrain neuroinflammation and brain injury in a murine ischemic stroke model.

Journal: Journal of neuroinflammation

Status: data only

[37871] doi:10.1186/s12974-023-02729-6 [paper, data]

Cannabinoids modulate the microbiota-gut-brain axis in HIV/SIV infection by reducing neuroinflammation and dysbiosis while concurrently elevating endocannabinoid and indole-3-propionate levels.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[37872] doi:10.1186/s12974-023-02746-5 [paper, data]

Peripheral inflammation in behavioural variant frontotemporal dementia: associations with central degeneration and clinical measures.

Journal: Journal of neuroinflammation

Status: data only, 9 datasets cited

[37873] doi:10.1371/journal.pbio.3002014 [paper, data]

Suppression of distracting inputs by visual-spatial cues is driven by anticipatory alpha activity.

Journal: PLoS biology

Status: data only, 1 dataset cited

[37874] doi:10.1371/journal.pone.0280987 [paper, data]

Computational modeling of human multisensory spatial representation by a neural architecture.

Journal: PloS one

Status: data only, 2 datasets cited

[37875] doi:10.1523/eneuro.0296-22.2023 [paper, repository]

Executive Control of Sequence Behavior in Pigeons Involves Two Distinct Brain Regions.

Journal: eNeuro

Authors' code: ngl.psy.ruhr-uni-bochum.de/ngl/shareware (no license), Zenodo 6044274 (CC-BY-4.0)

Status: code verified, 9 files readable, 1 match

[37876] doi:10.3389/fgene.2023.947144 [paper, data]

Effects of <i>HAR1</i> on cognitive function in mice and the regulatory network of <i>HAR1</i> determined by RNA sequencing and applied bioinformatics analysis.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[37877] doi:10.3389/fneur.2023.1084661 [paper, repository]

Central vein sign and diffusion MRI differentiate microstructural features within white matter lesions of multiple sclerosis patients with comorbidities.

Journal: Frontiers in neurology

Authors' code: ekaden/smt (BSD-2-Clause)

Status: code verified, 41 files readable, 2 matches

[37878] doi:10.3389/fneur.2023.1103349 [paper, data]

Rehabilomics: A state-of-the-art review of framework, application, and future considerations.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[37879] doi:10.3389/fnins.2023.1110674 [paper, data]

Improvement of semantic processing ability of Chinese characters in school children: A comparative study based on 2009 and 2019 data.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37880] doi:10.3389/fnins.2023.1128197 [paper, repository]

Pre-stimulus beta power varies as a function of auditory-motor synchronization and temporal predictability.

Journal: Frontiers in neuroscience

Authors' code: mschmidt-kassow/prestimbeta (no license)

Status: code verified, 6 files readable, 6 matches

[37881] doi:10.3389/fnins.2023.1141701 [paper, data]

High-accuracy deep ANN-to-SNN conversion using quantization-aware training framework and calcium-gated bipolar leaky integrate and fire neuron.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37882] doi:10.3389/fnins.2023.1141884 [paper, repository]

An <i>in-silico</i> framework for modeling optimal control of neural systems.

Journal: Frontiers in neuroscience

Authors' code: rbodo/neural_control (no license)

Status: code verified, 146 files readable, 5 matches

[37883] doi:10.3389/fnins.2023.984919 [paper, data]

Effects of television viewing on brain structures and risk of dementia in the elderly: Longitudinal analyses.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37884] doi:10.3389/fsysb.2023.1122433 [paper, repository]

Distinct mechanisms underlie electrical coupling resonance and its interaction with membrane potential resonance.

Journal: Frontiers in systems biology

Authors' code: fnadim/ECouplingResonance (no license)

Status: empty repository

[37885] doi:10.3390/ani13060978 [paper, data]

The Use of Sand Substrate Modulates Dominance Behaviour and Brain Gene Expression in a Flatfish Species.

Journal: Animals : an open access journal from MDPI

Status: data only, 1 dataset cited

[37886] doi:10.3390/biomedicines11030820 [paper, data]

Role of Glutamatergic Projections from Lateral Habenula to Ventral Tegmental Area in Inflammatory Pain-Related Spatial Working Memory Deficits.

Journal: Biomedicines

Status: data only, 1 dataset cited

[37887] doi:10.3390/cells12060831 [paper, data]

CircXPO1 Promotes Glioblastoma Malignancy by Sponging miR-7-5p.

Journal: Cells

Status: data only, 1 dataset cited

[37888] doi:10.3758/s13415-022-01060-6 [paper, repository]

Age differences in the neural basis of decision-making under uncertainty.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF fwezy (no license)

Status: code verified, 5 files readable, 2 matches

[37889] doi:10.7554/elife.78756 [paper, data]

High-resolution quantitative and functional MRI indicate lower myelination of thin and thick stripes in human secondary visual cortex.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 7 March 2023 (23 papers)

[37890] doi:10.1002/hbm.26254 [paper, repository]

Tensorial independent component analysis reveals social and reward networks associated with major depressive disorder.

Journal: Human brain mapping

Authors' code: jbdenniso/CSNmaps (no license), identifiers.org/neurovault.collection:13474 (no license)

Status: code verified, 4 files readable, 1 match

[37891] doi:10.1002/hbm.26258 [paper, repository]

Using graph theory as a common language to combine neural structure and function in models of healthy cognitive performance.

Journal: Human brain mapping

Authors' code: mclit/gt (no license), MCLit/GT-PCA-SWR (no license)

Status: code verified, 36 files readable

[37892] doi:10.1007/s10548-023-00947-y [paper]

Hybrid Genetic Algorithm for Clustering IC Topographies of EEGs.

Journal: Brain topography

Status: code on request

[37893] doi:10.1016/j.dcn.2023.101226 [paper, repository]

Diminished reinforcement sensitivity in adolescence is associated with enhanced response switching and reduced coding of choice probability in the medial frontal pole.

Journal: Developmental cognitive neuroscience

Authors' code: OSF ptxs6 (no license)

Status: code verified

[37894] doi:10.1016/j.patter.2023.100693 [paper, repository]

SynapseCLR: Uncovering features of synapses in primary visual cortex through contrastive representation learning.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 7545417 (no license), microns-explorer.org/phase1 (no license), seung-lab/cloud-volume (BSD-3-Clause), rapidsai/cuml (Apache-2.0), AllenInstitute/MicronsBinder (BSD-2-Clause), broadinstitute/synapseclr (BSD-3-Clause)

Status: code verified, 832 files readable, 20 matches

[37895] doi:10.1016/j.ynstr.2023.100532 [paper, data]

Genomic regulation of Krüppel-like-factor family members by corticosteroid receptors in the rat brain.

Journal: Neurobiology of stress

Status: data only, 1 dataset cited

[37896] doi:10.1021/jacsau.2c00492 [paper, repository]

Correlative Chemical Imaging and Spatial Chemometrics Delineate Alzheimer Plaque Heterogeneity at High Spatial Resolution.

Journal: JACS Au

Authors' code: CamachoDejay/czi_spec_im_load (GPL-3.0), patrickwehrli/multimodal_ims (GPL-3.0)

Status: code verified, 12 files readable, 3 matches

[37897] doi:10.1038/s41398-023-02379-5 [paper]

Investigating brain aging trajectory deviations in different brain regions of individuals with schizophrenia using multimodal magnetic resonance imaging and brain-age prediction: a multicenter study.

Journal: Translational psychiatry

Status: code on request

[37898] doi:10.1038/s41531-023-00478-0 [paper, data]

Deficiency of Perry syndrome-associated p150&lt;sup&gt;Glued&lt;/sup&gt; in midbrain dopaminergic neurons leads to progressive neurodegeneration and endoplasmic reticulum abnormalities.

Journal: NPJ Parkinson's disease

Status: data only, 2 datasets cited

[37899] doi:10.1038/s41598-022-17213-z [paper, repository]

MFCSC: Novel method to calculate mismatch between functional and structural brain connectomes, and its application for detecting hemispheric functional specialisations.

Journal: Scientific reports

Authors' code: civier/mfcsc (MIT), OSF d7j9n (no license)

Status: code verified, 145 files readable, 2 matches

[37900] doi:10.1038/s41598-023-30223-9 [paper, repository]

On electromagnetic head digitization in MEG and EEG.

Journal: Scientific reports

Authors' code: Zenodo 3233557 (CC-BY-4.0)

Status: code verified

[37901] doi:10.1038/s41598-023-30413-5 [paper, repository]

High expression of PCOLCE gene indicate poor prognosis in patients and are associated with immune infiltration in glioma.

Journal: Scientific reports

Authors' code: GuangchuangYu/enrichplot (no license)

Status: code verified, 58 files readable

[37902] doi:10.1088/1741-2552/acbc4a [paper, repository]

How to entrain a selected neuronal rhythm but not others: open-loop dithered brain stimulation for selective entrainment.

Journal: Journal of neural engineering

Authors' code: benoit-du/dithered-stimulation (MIT)

Status: code verified, 26 files readable, 6 matches

[37903] doi:10.1186/s13059-023-02878-0 [paper, repository]

Multi-ancestry phenome-wide association of complement component 4 variation with psychiatric and brain phenotypes in youth.

Journal: Genome biology

Authors' code: rpubs.com/helloyjjoo/phewas_connectome (no license), leamhernandez/C4A-ABCD (MIT), Zenodo 7542574 (CC-BY-4.0)

Status: code verified, 20 files readable, 7 matches

[37904] doi:10.1186/s40658-023-00535-w [paper]

Image-derived input functions from dynamic ¹⁵O-water PET scans using penalised reconstruction.

Journal: EJNMMI physics

Status: code on request

[37905] doi:10.1371/journal.pone.0280501 [paper, repository]

Multi-compartmental model of glymphatic clearance of solutes in brain tissue.

Journal: PloS one

Authors' code: jorgenriseth/multicompartment-solute-transport (no license)

Status: code verified, 10 files readable, 4 matches

[37906] doi:10.26508/lsa.202201752 [paper, data]

The TUDOR domain of SMN is an H3K79^me1 histone mark reader.

Journal: Life science alliance

Status: data only, 1 dataset cited

[37907] doi:10.3389/fnins.2023.1074730 [paper, repository]

Estimation of free water-corrected microscopic fractional anisotropy.

Journal: Frontiers in neuroscience

Authors' code: coreybaron/fwe_ufa (MIT)

Status: code verified, 6 files readable, 3 matches

[37908] doi:10.3390/brainsci13030453 [paper, repository]

Get a New Perspective on EEG: Convolutional Neural Network Encoders for Parametric t-SNE.

Journal: Brain sciences

Authors' code: lvdmaaten.github.io/tsne (no license)

Status: code verified

[37909] doi:10.3390/diagnostics13061018 [paper, data]

Adult-Onset Leukoencephalopathy with Axonal Spheroid and Pigmented Glia: Different Histological Spectrums Presented in Autopsy Cases of Siblings and a Surgical Case of Stereotactic Biopsy.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

[37910] doi:10.47626/2237-6089-2021-0298 [paper, data]

Brain-derived neurotrophic factor serum levels following ketamine and esketamine intervention for treatment-resistant depression: secondary analysis from a randomized trial.

Journal: Trends in psychiatry and psychotherapy

Status: data only, 2 datasets cited

[37911] doi:10.7554/elife.79908 [paper, repository]

Evolution of neural activity in circuits bridging sensory and abstract knowledge.

Journal: eLife

Authors' code: fmastrogiuseppe/EvolutionActivity (no license)

Status: code verified, 52 files readable, 2 matches

[37912] doi:10.7717/peerj.14913 [paper, data]

RNA-seq reveals Nup62 as a potential regulator for cell division after traumatic brain injury in mice hippocampus.

Journal: PeerJ

Status: data only, 1 dataset cited

Monday, 6 March 2023 (23 papers)

[37913] doi:10.1007/s44192-023-00034-5 [paper, data]

Computational analysis of crosstalk between transcriptional regulators and RNA-binding proteins suggests mutual regulation of polycomb proteins and SRSF1 influencing adult hippocampal neurogenesis.

Journal: Discover mental health

Status: data only, 1 dataset cited

[37914] doi:10.1016/j.heliyon.2023.e14325 [paper, data]

Amplitude of low-frequency fluctuation-based regional radiomics similarity network: Biomarker for Parkinson's disease.

Journal: Heliyon

Status: data only, 1 dataset cited

[37915] doi:10.1016/j.ynirp.2023.100160 [paper, repository]

Hand preference and the corpus callosum: Is there really no association?

Journal: Neuroimage. Reports

Authors' code: OSF u25gn (no license)

Status: code verified, 1 file readable, 4 matches

[37916] doi:10.1038/s41467-023-36807-3 [paper, repository]

Neuro-computational mechanisms and individual biases in action-outcome learning under moral conflict.

Journal: Nature communications

Authors' code: OSF rk8w4 (no license)

Status: code verified, 3 files readable

[37917] doi:10.1038/s41467-023-36876-4 [paper, repository]

Zebrafish pigment cells develop directly from persistent highly multipotent progenitors.

Journal: Nature communications

Authors' code: jkrijthe/Rtsne (BSD-3-Clause), SevaVigg/NanoStringDanioNCCscAnalysis (MIT), Zenodo 7585731 (other-open)

Status: code verified, 113 files readable, 19 matches

[37918] doi:10.1038/s41746-023-00784-0 [paper, repository]

U-Sleep's resilience to AASM guidelines.

Journal: NPJ digital medicine

Authors' code: perslev/U-Time (MIT)

Status: code verified, 67 files readable, 7 matches

[37919] doi:10.1073/pnas.2218209120 [paper, repository]

SIK3-HDAC4 in the suprachiasmatic nucleus regulates the timing of arousal at the dark onset and circadian period in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: fuyuki-asano/circadian_analysis (MIT), figshare 1 (no license), fuyukiasano/circadian_analysis (no license)

Status: code verified, 19 files readable, 4 matches

[37920] doi:10.1098/rstb.2021.0472 [paper, repository]

Neural mechanisms for emotional contagion and spontaneous mimicry of live facial expressions.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6412271 (no license)

Status: code found, still to be checked

[37921] doi:10.1128/spectrum.03458-22 [paper, data]

Predicting Neurodegenerative Disease Using Prepathology Gut Microbiota Composition: a Longitudinal Study in Mice Modeling Alzheimer's Disease Pathologies.

Journal: Microbiology spectrum

Status: data only, 1 dataset cited

[37922] doi:10.1136/svn-2022-001929 [paper, data]

Blood pressure-related white matter microstructural disintegrity and associated cognitive function impairment in asymptomatic adults.

Journal: Stroke and vascular neurology

Status: data only, 3 datasets cited

[37923] doi:10.1186/s12929-023-00907-5 [paper, data]

Novel, thalidomide-like, non-cereblon binding drug tetrafluorobornylphthalimide mitigates inflammation and brain injury.

Journal: Journal of biomedical science

Status: data only, 1 dataset cited

[37924] doi:10.1371/journal.pcbi.1010958 [paper, repository]

Macroscopic resting state model predicts theta burst stimulation response: A randomized trial.

Journal: PLoS computational biology

Authors' code: Behzad-Iravani/WBM-TMS-and-Depression- (no license)

Status: code verified, 17 files readable, 9 matches

[37925] doi:10.1371/journal.pone.0281727 [paper, repository]

Morpho-radiological and brain endocast analysis in the study of Hyperostosis Frontalis Interna (HFI): A combined approach.

Journal: PloS one

Authors' code: figshare 12923729 (CC-BY-4.0), figshare 13513890 (CC-BY-4.0)

Status: empty repository

[37926] doi:10.1371/journal.pone.0282171 [paper, repository]

Sparse representation learning derives biological features with explicit gene weights from the Allen Mouse Brain Atlas.

Journal: PloS one

Authors' code: jmetzen/sparse-filtering (BSD-3-Clause)

Status: code verified, 5 files readable, 3 matches

[37927] doi:10.1590/0037-8682-0095-2022 [paper, data]

Study of karyotype and constitutive heterochromatin of Mansonia spp. (Diptera: Culicidae) in the area surrounding the Jirau Hydroelectric Dam, Rondônia, Brazil.

Journal: Revista da Sociedade Brasileira de Medicina Tropical

Status: data only, 1 dataset cited

[37928] doi:10.3389/fendo.2023.1147554 [paper, data]

Acetylcholine regulation of GnRH neuronal activity: A circuit in the medial septum.

Journal: Frontiers in endocrinology

Status: data only, 4 datasets cited

[37929] doi:10.3389/fimmu.2023.1100967 [paper, data]

Characterization of a mutant <i>samhd1</i> zebrafish model implicates dysregulation of cholesterol biosynthesis in Aicardi-Goutières syndrome.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[37930] doi:10.3389/fmolb.2023.1101953 [paper, repository]

Antisense lncRNA &lt;i&gt;CHROMR&lt;/i&gt; is linked to glioma patient survival.

Journal: Frontiers in molecular biosciences

Authors' code: hyeshik/poreplex (MIT)

Status: code verified, 42 files readable, 2 matches

[37931] doi:10.3389/fncom.2023.1108346 [paper, repository]

A computational passage-of-time model of the cerebellar Purkinje cell in eyeblink conditioning.

Journal: Frontiers in computational neuroscience

Authors' code: mgricci/purkinje (no license)

Status: code verified, 15 files readable

[37932] doi:10.3390/jcm12052079 [paper, repository]

Sleep Quality Disturbances Are Associated with White Matter Alterations in Veterans with Post-Traumatic Stress Disorder and Mild Traumatic Brain Injury.

Journal: Journal of clinical medicine

Authors' code: pnlbwh/pnlutil (no license), SlicerDMRI/whitematteranalysis (other), pnlbwh/ukftractography (other)

Status: code verified, 482 files readable, 5 matches

[37933] doi:10.34133/research.0060 [paper]

A Single Central Pattern Generator for the Control of a Locomotor Rolling Wave in Mollusc <i>Aplysia</i>.

Journal: Research (Washington, D.C.)

Status: code on request

[37934] doi:10.7554/elife.82895 [paper, repository]

Contrary neuronal recalibration in different multisensory cortical areas.

Journal: eLife

Authors' code: FuZengBio/Recalibration (MIT)

Status: code verified, 6 files readable, 3 matches

[37935] doi:10.7554/elife.85035 [paper, repository]

Distinct roles of forward and backward alpha-band waves in spatial visual attention.

Journal: eLife

Authors' code: artipago/Travelling-waves-EEG-2.0 (CC0-1.0)

Status: code verified, 8 files readable, 1 match

Sunday, 5 March 2023 (7 papers)

[37936] doi:10.1016/j.isci.2023.106338 [paper]

Neural and central mechanisms of kidney fibrosis after relief of ureteral obstruction.

Journal: iScience

Status: code on request

[37937] doi:10.1016/j.isci.2023.106342 [paper]

Selective dysfunction of fast-spiking inhibitory interneurons and disruption of perineuronal nets in a tauopathy mouse model.

Journal: iScience

Status: code on request

[37938] doi:10.1016/j.jneumeth.2023.109827 [paper, repository]

A cranial implant for stabilizing whole-cell patch-clamp recordings in behaving rodents.

Journal: Journal of neuroscience methods

Authors' code: losonczylab/sima (GPL-2.0)

Status: code verified, 55 files readable

[37939] doi:10.1016/j.neuroimage.2023.119999 [paper, repository]

Using mesoscopic tract-tracing data to guide the estimation of fiber orientation distributions in the mouse brain from diffusion MRI.

Journal: NeuroImage

Authors' code: liangzifei/MRTod_net (no license), liangzifei/MR-TOD-net (MIT)

Status: code verified, 10 files readable, 1 match

[37940] doi:10.1016/j.nicl.2023.103367 [paper, repository]

Aberrant frontal lobe "U"-shaped association fibers in first-episode schizophrenia: A 7-Tesla Diffusion Imaging Study.

Journal: NeuroImage. Clinical

Authors' code: kaitj/gradunwarp (MIT)

Status: code verified, 27 files readable, 2 matches

[37941] doi:10.1186/s12974-023-02737-6 [paper, data]

IFNAR signaling of neuroectodermal cells is essential for the survival of C57BL/6 mice infected with Theiler's murine encephalomyelitis virus.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[37942] doi:10.7150/ijbs.80873 [paper, data]

LncRNA GSCAR promotes glioma stem cell maintenance via stabilizing SOX2 expression.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

Saturday, 4 March 2023 (9 papers)

[37943] doi:10.1016/j.ynirp.2023.100161 [paper, repository]

Semantic surprise predicts the N400 brain potential.

Journal: Neuroimage. Reports

Authors' code: OSF x82f9 (no license)

Status: code verified, 4 files readable, 5 matches

[37944] doi:10.1038/s41419-023-05702-6 [paper]

TRIM56 acts through the IQGAP1-CDC42 signaling axis to promote glioma cell migration and invasion.

Journal: Cell death & disease

Status: data only

[37945] doi:10.1038/s41598-023-30095-z [paper, repository]

Molecular-evaluated and explainable drug repurposing for COVID-19 using ensemble knowledge graph embedding.

Journal: Scientific reports

Authors' code: gitlab.inria.fr/capsid.public_codes/drug-repurposing-covid19 (MIT)

Status: code verified, 22 files readable, 7 matches

[37946] doi:10.1038/s42003-023-04586-8 [paper, data]

C. elegans is not a robust model organism for the magnetic sense.

Journal: Communications biology

Status: data only, 1 dataset cited

[37947] doi:10.1093/pnasnexus/pgad068 [paper, data]

Store-operated Ca²⁺ entry regulatory factor alters murine metabolic state in an age-dependent manner via hypothalamic pathways.

Journal: PNAS nexus

Status: data only, 1 dataset cited

[37948] doi:10.3390/brainsci13030441 [paper, data]

Increased Pre-Boundary Lengthening Does Not Enhance Implicit Intonational Phrase Perception in European Portuguese: An EEG Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

[37949] doi:10.3390/brainsci13030446 [paper, repository]

Entorhinal Cortex Functional Connectivity during Item Long-Term Memory and the Role of Sex.

Journal: Brain sciences

Authors' code: sites.google.com/bc.edu/sd-slotnick (no license)

Status: code verified

[37950] doi:10.3390/diagnostics13050977 [paper, data]

A Bimodal Emotion Recognition Approach through the Fusion of Electroencephalography and Facial Sequences.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[37951] doi:10.3390/ijms24054980 [paper, data]

Targeting Cellular Retinoic Acid Binding Protein 1 with Retinoic Acid-like Compounds to Mitigate Motor Neuron Degeneration.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

Friday, 3 March 2023 (29 papers)

[37952] doi:10.1002/mgg3.2159 [paper, data]

Expanding the genetic spectrum of giant axonal neuropathy: Two novel variants in Iranian families.

Journal: Molecular genetics & genomic medicine

Status: data only, 1 dataset cited

[37953] doi:10.1016/j.celrep.2023.112180 [paper, repository]

Post-translational proteomics platform identifies neurite outgrowth impairments in Parkinson's disease GBA-N370S dopamine neurons.

Journal: Cell reports

Authors' code: Zenodo 7606336 (other-open)

Status: code verified, 1 file readable

[37954] doi:10.1016/j.celrep.2023.112196 [paper, data]

APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge.

Journal: Cell reports

Status: code on request, 4 datasets cited

[37955] doi:10.1016/j.mcpro.2023.100523 [paper, data]

Cerebrospinal Fluid Protein Markers Indicate Neuro-Damage in SARS-CoV-2-Infected Nonhuman Primates.

Journal: Molecular & cellular proteomics : MCP

Status: data only, 1 dataset cited

[37956] doi:10.1038/s41386-023-01528-0 [paper, repository]

Nicotine dependence and insula subregions: functional connectivity and cue-induced activation.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: OSF 24tkf (no license)

Status: empty repository

[37957] doi:10.1038/s41398-023-02381-x [paper, repository]

Longitudinal changes in neural gain and its relationship to cognitive control trajectory in young adults with early psychosis.

Journal: Translational psychiatry

Authors' code: bjornburg/Longitudinal-changes-in-gain-and-cognition-in-early-psychosis (no license)

Status: empty repository

[37958] doi:10.1038/s41398-023-02382-w [paper, data]

Mu-opioid receptor-expressing neurons in the paraventricular thalamus modulate chronic morphine-induced wake alterations.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[37959] doi:10.1038/s41467-023-36585-y [paper, repository]

RNA splicing analysis using heterogeneous and large RNA-seq datasets.

Journal: Nature communications

Authors' code: Zenodo 7508313 (CC-BY-4.0), majiq.biociphers.org (no license), biociphers/validations_tools (no license)

Status: code verified, 34 files readable

[37960] doi:10.1038/s41467-023-36847-9 [paper, data]

ARF suppression by MYC but not MYCN confers increased malignancy of aggressive pediatric brain tumors.

Journal: Nature communications

Status: data only, 2 datasets cited

[37961] doi:10.1038/s41467-023-36861-x [paper, data]

Cryo-EM structure of human heptameric pannexin 2 channel.

Journal: Nature communications

Status: data only, 2 datasets cited

[37962] doi:10.1038/s41598-023-30853-z [paper, repository]

An interpretable transformer network for the retinal disease classification using optical coherence tomography.

Journal: Scientific reports

Authors' code: kaggle.com/paultimothymooney/kermany2018 (no license)

Status: dead link

[37963] doi:10.1038/s43856-023-00265-1 [paper, repository]

Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma.

Journal: Communications medicine

Authors' code: Zenodo 7630546 (CC-BY-4.0)

Status: code verified, 2 files readable

[37964] doi:10.1093/braincomms/fcad056 [paper, repository]

Reduced coupling between offline neural replay events and default mode network activation in schizophrenia.

Journal: Brain communications

Authors' code: YunzheLiu/TDLM (no license)

Status: code verified, 21 files readable

[37965] doi:10.1126/sciadv.add2671 [paper, data]

CREB3L2-ATF4 heterodimerization defines a transcriptional hub of Alzheimer's disease gene expression linked to neuropathology.

Journal: Science advances

Status: data only, 1 dataset cited

[37966] doi:10.1186/s12917-023-03609-0 [paper, data]

A six-month prospective, randomised, double-blinded, placebo-controlled, crossover, dietary trial design to investigate the potential of psychobiotics on seizure semiology and comorbidities in canine epilepsy: study protocol.

Journal: BMC veterinary research

Status: data only, 2 datasets cited

[37967] doi:10.1186/s12974-023-02740-x [paper, data]

Effects of diabetes on microglial physiology: a systematic review of in vitro, preclinical and clinical studies.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[37968] doi:10.1371/journal.pcbi.1010919 [paper, repository]

Spatial and temporal correlations in human cortex are inherently linked and predicted by functional hierarchy, vigilance state as well as antiepileptic drug load.

Journal: PLoS computational biology

Authors' code: computational-neurologie/iEEG_STC (MIT)

Status: code verified, 30 files readable, 7 matches

[37969] doi:10.1371/journal.pcbi.1010941 [paper, repository]

NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML.

Journal: PLoS computational biology

Authors' code: scrook/neuroml-db (MIT), osb: (no license)

Status: code verified, 933 files readable, 2 matches

[37970] doi:10.1371/journal.pone.0282751 [paper, data]

Sex differences in mild vascular cognitive impairment: A multimodal transcranial magnetic stimulation study.

Journal: PloS one

Status: data only, 1 dataset cited

[37971] doi:10.1523/jneurosci.1200-22.2023 [paper, repository]

Multiple and Dissociable Effects of Sensory History on Working-Memory Performance.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 98ujm (no license)

Status: empty repository

[37972] doi:10.1523/jneurosci.1331-22.2023 [paper, data]

Widespread fMRI BOLD Signal Overactivations during Cognitive Control in Older Adults Are Not Matched by Corresponding Increases in fPET Glucose Metabolism.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 2 datasets cited

[37973] doi:10.3389/fbioe.2023.1110547 [paper, repository]

Hyaluronic acid-based bioink improves the differentiation and network formation of neural progenitor cells.

Journal: Frontiers in bioengineering and biotechnology

Authors' code: Zenodo 1119026 (MIT)

Status: code verified, 949 files readable

[37974] doi:10.3389/fimmu.2023.1131814 [paper, data]

Characterization of immature ovarian teratomas through single-cell transcriptome.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[37975] doi:10.3389/fnrgo.2023.994969 [paper, repository]

Benchmarking framework for machine learning classification from fNIRS data.

Journal: Frontiers in neuroergonomics

Authors' code: hanbnrd/benchnirs (MIT), HanBnrd/NIRSimple (MIT)

Status: code verified, 29 files readable, 8 matches

[37976] doi:10.3390/life13030691 [paper, repository]

Robust Classification and Detection of Big Medical Data Using Advanced Parallel <i>K</i>-Means Clustering, YOLOv4, and Logistic Regression.

Journal: Life (Basel, Switzerland)

Authors' code: muhammedtalo/COVID-19 (no license)

Status: code verified, 4 files readable

[37977] doi:10.3390/s23052798 [paper, data]

EEG-Based BCIs on Motor Imagery Paradigm Using Wearable Technologies: A Systematic Review.

Journal: Sensors (Basel, Switzerland)

Status: data only, 5 datasets cited

[37978] doi:10.3758/s13415-023-01073-9 [paper, data]

Limited impacts of biogenetic messaging on neural correlates of cognitive control and beliefs about depression.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

[37979] doi:10.7554/elife.73189 [paper, repository]

A gene regulatory network for neural induction.

Journal: eLife

Authors' code: alexthiery/10x_neural_tube (MIT), grace-hc-lu/NI_network (MIT), grace-hc-lu/DREiVe (MIT), supp:PMC10038663/elife-73189-supp1.zip (no license)

Status: code verified, 64 files readable, 15 matches

[37980] doi:10.7554/elife.81818 [paper, data]

Molecular and spatial profiling of the paraventricular nucleus of the thalamus.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 2 March 2023 (27 papers)

[37981] doi:10.1016/j.celrep.2023.112176 [paper]

Multi-finger receptive field properties in primary somatosensory cortex: A revised account of the spatiotemporal integration functions of area 3b.

Journal: Cell reports

Status: code on request

[37982] doi:10.1016/j.celrep.2023.112204 [paper, data]

The dopamine neuron synaptic map in the striatum.

Journal: Cell reports

Status: code on request, 2 datasets cited

[37983] doi:10.1016/j.isci.2023.106316 [paper]

Long-range connectome of pyramidal neurons in the sensorimotor cortex.

Journal: iScience

Status: code on request

[37984] doi:10.1016/j.nicl.2023.103365 [paper, repository]

Meningioma microstructure assessed by diffusion MRI: An investigation of the source of mean diffusivity and fractional anisotropy by quantitative histology.

Journal: NeuroImage. Clinical

Authors' code: qupath (no license), jan-brabec/microimaging_vs_histology_in_meningeomas (CC-BY-4.0), markus-nilsson/md-dmri (other), jan-brabec/microimaging_histology_DIB (CC-BY-4.0)

Status: code verified, 802 files readable, 10 matches

[37985] doi:10.1038/s41467-023-36608-8 [paper, repository]

Expectation violations enhance neuronal encoding of sensory information in mouse primary visual cortex.

Journal: Nature communications

Authors' code: MatthewFTang/PredictionOrientationSelectivityMouseV1 (GPL-3.0), Zenodo 7444479 (other-open)

Status: code verified, 189 files readable, 1 match

[37986] doi:10.1038/s41562-022-01516-2 [paper, data]

Evidence of a predictive coding hierarchy in the human brain listening to speech.

Journal: Nature human behaviour

Status: data only, 1 dataset cited

[37987] doi:10.1038/s41562-023-01541-9 [paper, repository]

Rare CNVs and phenome-wide profiling highlight brain structural divergence and phenotypical convergence.

Journal: Nature human behaviour

Authors' code: MRCIEU/PHESANT (MIT), dblabs-mcgill-mila/CNV-convergence (MIT)

Status: code verified, 64 files readable, 12 matches

[37988] doi:10.1038/s41598-023-30502-5 [paper]

Diffusion tensor imaging metrics associated with future disability in multiple sclerosis.

Journal: Scientific reports

Status: code on request

[37989] doi:10.1073/pnas.2206758120 [paper, repository]

Neuron-specific transcriptomic signatures indicate neuroinflammation and altered neuronal activity in ASD temporal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gandallab/ASD_STG_LCM_RNAseq (no license)

Status: code verified, 56 files readable, 10 matches

[37990] doi:10.1093/braincomms/fcad048 [paper, repository]

Uncovering spatiotemporal patterns of atrophy in progressive supranuclear palsy using unsupervised machine learning.

Journal: Brain communications

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable, 6 matches

[37991] doi:10.1109/tmi.2022.3218720 [paper, repository]

Supervised Phenotype Discovery From Multimodal Brain Imaging.

Journal: IEEE transactions on medical imaging

Authors' code: trendscenter/fit (no license)

Status: code verified, 586 files readable, 2 matches

[37992] doi:10.1186/s12864-023-09203-w [paper, data]

Construct of qualitative diagnostic biomarkers specific for glioma by pairing serum microRNAs.

Journal: BMC genomics

Status: data only, 1 dataset cited

[37993] doi:10.1186/s42490-023-00067-5 [paper, repository]

Wavelet image scattering based glaucoma detection.

Journal: BMC biomedical engineering

Authors' code: miag-ull/rim-one-dl (other), drive.google.com/file/d (no license)

Status: code verified, 4 files readable

[37994] doi:10.3389/fmicb.2023.1132866 [paper, repository]

Differences in peripheral and central metabolites and gut microbiome of laying hens with different feather-pecking phenotypes.

Journal: Frontiers in microbiology

Authors' code: torognes/vsearch (GPL-3.0)

Status: code verified, 162 files readable

[37995] doi:10.3389/fnana.2023.1118170 [paper, repository]

Cell-type-specific densities in mouse somatosensory cortex derived from scRNA-seq and <i>in situ</i> RNA hybridization.

Journal: Frontiers in neuroanatomy

Authors' code: BlueBrain/distributor (Apache-2.0)

Status: code verified, 52 files readable, 2 matches

[37996] doi:10.3389/fncel.2023.1112405 [paper, data]

Large-scale analyses of CAV1 and CAV2 suggest their expression is higher in post-mortem ALS brain tissue and affects survival.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[37997] doi:10.3389/fninf.2023.1086634 [paper, repository]

An accessible and versatile deep learning-based sleep stage classifier.

Journal: Frontiers in neuroinformatics

Authors' code: jshanna100/gssc (AGPL-3.0)

Status: code verified, 16 files readable, 6 matches

[37998] doi:10.3389/fnins.2023.1113216 [paper, data]

A conjoint analysis of bulk RNA-seq and single-nucleus RNA-seq for revealing the role of ferroptosis and iron metabolism in ALS.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[37999] doi:10.3389/fnins.2023.1114045 [paper, repository]

Evaluation of T2-prepared blood oxygenation level dependent functional magnetic resonance imaging with an event-related task: Hemodynamic response function and reproducibility.

Journal: Frontiers in neuroscience

Authors' code: canlab/canlabcore (GPL-2.0)

Status: code verified, 2,000 files readable, 2 matches

[38000] doi:10.3389/fpsyt.2023.1127353 [paper, repository]

Longitudinal multi-omics alterations response to 8-week risperidone monotherapy: Evidence linking cortical thickness, transcriptomics and epigenetics.

Journal: Frontiers in psychiatry

Authors' code: BMHLab/AHBAprocessing (no license)

Status: code verified, 386 files readable

[38001] doi:10.3389/fpsyt.2023.1139451 [paper, data]

Incorporating multi-stage diagnosis status to mine associations between genetic risk variants and the multi-modality phenotype network in major depressive disorder.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[38002] doi:10.3390/cancers15051557 [paper, data]

Quantitative Evaluation of Stem-like Markers of Human Glioblastoma Using Single-Cell RNA Sequencing Datasets.

Journal: Cancers

Status: data only, 1 dataset cited

[38003] doi:10.3390/cancers15051562 [paper, data]

Exploring Novel Therapeutic Opportunities for Glioblastoma Using Patient-Derived Cell Cultures.

Journal: Cancers

Status: data only, 4 datasets cited

[38004] doi:10.3390/cancers15051567 [paper, data]

Soluble Guanylate Cyclase β1 Subunit Represses Human Glioblastoma Growth.

Journal: Cancers

Status: data only, 1 dataset cited

[38005] doi:10.3390/genes14030629 [paper]

Zeb2 DNA-Binding Sites in Neuroprogenitor Cells Reveal Autoregulation and Affirm Neurodevelopmental Defects, Including in Mowat-Wilson Syndrome.

Journal: Genes

Status: data only

[38006] doi:10.3390/ijms24054839 [paper]

Exploration of the Shared Molecular Mechanisms between COVID-19 and Neurodegenerative Diseases through Bioinformatic Analysis.

Journal: International journal of molecular sciences

Status: data only

[38007] doi:10.7554/elife.83365 [paper, repository]

The entorhinal-DG/CA3 pathway in the medial temporal lobe retains visual working memory of a simple surface feature.

Journal: eLife

Authors' code: OSF zvdnr (no license)

Status: code verified, 4 files readable

Wednesday, 1 March 2023 (62 papers)

[38008] doi:10.1002/cam4.5688 [paper, data]

Identification of a copper metabolism-related gene signature for predicting prognosis and immune response in glioma.

Journal: Cancer medicine

Status: data only, 13 datasets cited

[38009] doi:10.1002/dev.22360 [paper, repository]

Associations between the human immune system and gut microbiome with neurodevelopment in the first 5 years of life: A systematic scoping review.

Journal: Developmental psychobiology

Authors' code: OSF nk72p (no license)

Status: empty repository

[38010] doi:10.1002/pro.4571 [paper, data]

Swing-out opening of stromal interaction molecule 1.

Journal: Protein science : a publication of the Protein Society

Status: data only, 2 datasets cited

[38011] doi:10.1007/s13365-023-01112-8 [paper, repository]

Herpesviruses, polyomaviruses, parvoviruses, papillomaviruses, and anelloviruses in vestibular schwannoma.

Journal: Journal of neurovirology

Authors' code: viromelab/TRACESPipeLite (MIT)

Status: code verified, 53 files readable, 3 matches

[38012] doi:10.1016/j.ccell.2023.02.012 [paper, data]

Cancer hallmarks intersect with neuroscience in the tumor microenvironment.

Journal: Cancer cell

Status: data only, 1 dataset cited

[38013] doi:10.1016/j.celrep.2023.112173 [paper, repository]

A cell-type-specific alternative splicing regulator shapes synapse properties in a trans-synaptic manner.

Journal: Cell reports

Authors' code: neurodroid.github.io/stimfit (no license)

Status: code verified

[38014] doi:10.1016/j.celrep.2023.112200 [paper]

Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep.

Journal: Cell reports

Status: code on request

[38015] doi:10.1016/j.cmet.2023.02.004 [paper, data]

Estradiol regulates leptin sensitivity to control feeding via hypothalamic Cited1.

Journal: Cell metabolism

Status: code on request, 1 dataset cited

[38016] doi:10.1016/j.cmet.2023.02.005 [paper]

FGF21 counteracts alcohol intoxication by activating the noradrenergic nervous system.

Journal: Cell metabolism

Status: code on request

[38017] doi:10.1016/j.dib.2023.109018 [paper, data]

A tightly controlled fMRI dataset for receptive field mapping in human visual cortex.

Journal: Data in brief

Status: data only, 3 datasets cited

[38018] doi:10.1016/j.neuroimage.2023.119993 [paper]

Column-based cortical depth analysis of the diffusion anisotropy and radiality in submillimeter whole-brain diffusion tensor imaging of the human cortical gray matter in vivo.

Journal: NeuroImage

Status: code on request

[38019] doi:10.1016/j.rpth.2023.100143 [paper]

Recanalization and outcomes after cerebral venous thrombosis: a systematic review and meta-analysis.

Journal: Research and practice in thrombosis and haemostasis

Status: code on request

[38020] doi:10.1038/s41467-023-36796-3 [paper, repository]

Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST.

Journal: Nature communications

Authors' code: qukunlab/spatialbenchmarking (BSD-2-Clause), slowkow/harmonypy (GPL-3.0), JinmiaoChenLab/GraphST (AGPL-3.0)

Status: code verified, 87 files readable, 10 matches

[38021] doi:10.1038/s41467-023-36818-0 [paper, data]

Linoleic acid improves PIEZO2 dysfunction in a mouse model of Angelman Syndrome.

Journal: Nature communications

Status: data only, 1 dataset cited

[38022] doi:10.1038/s41598-023-30381-w [paper, repository]

Comparative validation of AI and non-AI methods in MRI volumetry to diagnose Parkinsonian syndromes.

Journal: Scientific reports

Authors' code: kskim-phd/AI_vs_FS (no license)

Status: code verified, 12 files readable, 2 matches

[38023] doi:10.1038/s41598-023-30579-y [paper, repository]

Community detection in brain connectomes with hybrid quantum computing.

Journal: Scientific reports

Authors' code: alecrimi/clustering-dwave (no license)

Status: code verified, 8 files readable, 1 match

[38024] doi:10.1055/s-0043-1763486 [paper, data]

Elderly people with human T-cell leukemia virus type 1-associated myelopathy present an early impairment in cognitive skills.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[38025] doi:10.1055/s-0043-1764416 [paper, data]

Exploring clinical outcomes in patients with idiopathic/inherited isolated generalized dystonia and stimulation of the subthalamic region.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[38026] doi:10.1055/s-0043-1767764 [paper, data]

Specificity and sensitivity of the SeLECT score in predicting late seizures in patients undergoing intravenous thrombolytic treatment and the effect of diabetes mellitus and leukoaraiosis.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[38027] doi:10.1073/pnas.2213034120 [paper, repository]

Macaques recognize features in synthetic images derived from ventral stream neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 8ct5u (no license)

Status: code verified, 7 files readable, 1 match

[38028] doi:10.1093/brain/awac150 [paper, repository]

Disorganization of language and working memory systems in frontal versus temporal lobe epilepsy.

Journal: Brain : a journal of neurology

Authors' code: lcaciagl/Language_WM_FLE_vs_TLE (no license)

Status: code verified, 4 files readable, 6 matches

[38029] doi:10.1093/brain/awac160 [paper, data]

Mosaic divergent repeat interruptions in XDP influence repeat stability and disease onset.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[38030] doi:10.1093/brain/awac298 [paper, repository]

Mapping astrogliosis in the individual human brain using multidimensional MRI.

Journal: Brain : a journal of neurology

Authors' code: pyushkevich/greedy (Apache-2.0)

Status: code verified, 152 files readable

[38031] doi:10.1093/brain/awac305 [paper, repository]

Conserved patterns across ion channels correlate with variant pathogenicity and clinical phenotypes.

Journal: Brain : a journal of neurology

Authors' code: LalResearchGroup/Channel_Distances (no license)

Status: empty repository, 1 file readable

[38032] doi:10.1093/brain/awac378 [paper, repository]

Transcriptomic and connectomic correlates of differential spatial patterning among gliomas.

Journal: Brain : a journal of neurology

Authors' code: RafaelRomeroGarcia/subParcellation_symmetric (no license)

Status: code verified, 37 files readable

[38033] doi:10.1093/brain/awac445 [paper, data]

In vivo reduction of age-dependent neuromelanin accumulation mitigates features of Parkinson's disease.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[38034] doi:10.1093/braincomms/fcad055 [paper]

Prediction of post-stroke motor recovery benefits from measures of sub-acute widespread network damages.

Journal: Brain communications

Status: code on request

[38035] doi:10.1093/cercor/bhac219 [paper, repository]

Altered alpha/beta desynchronization during item-context binding contributes to the associative deficit in older age.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF tcdkn (no license)

Status: code verified, 16 files readable, 2 matches

[38036] doi:10.1093/cercor/bhac227 [paper, repository]

Young adults who improve performance during dual-task walking show more flexible reallocation of cognitive resources: a mobile brain-body imaging (MoBI) study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: CNL-R (no license)

Status: code verified

[38037] doi:10.1093/cercor/bhac237 [paper, data]

Mapping frontoinsular cortex from diffusion microstructure.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[38038] doi:10.1093/cercor/bhac243 [paper, repository]

Cortico-cerebellar audio-motor regions coordinate self and other in musical joint action.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: drive.google.com/file/d (no license)

Status: code verified

[38039] doi:10.1093/cercor/bhac246 [paper]

Strong and reliable synaptic communication between pyramidal neurons in adult human cerebral cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[38040] doi:10.1093/cercor/bhac256 [paper, repository]

Genetic risk for schizophrenia is associated with increased proportion of indirect connections in brain networks revealed by a semi-metric analysis: evidence from population sample stratified for polygenic risk.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: stdimitr/semimetric_analysis_brain_networks (no license)

Status: empty repository

[38041] doi:10.1093/cercor/bhac275 [paper]

Biological constraints on stereotaxic targeting of functionally-defined cortical areas.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[38042] doi:10.1093/cercor/bhac303 [paper, repository]

Functional and structural features of L2/3 pyramidal cells continuously covary with pial depth in mouse visual cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: drguggiana/Weiler_Guggiana_2022_b (MIT)

Status: empty repository, 1 file readable

[38043] doi:10.1093/g3journal/jkad002 [paper, data]

The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish.

Journal: G3 (Bethesda, Md.)

Status: data only, 1 dataset cited

[38044] doi:10.1093/genetics/iyac188 [paper, repository]

Long-range regulatory effects of Neandertal DNA in modern humans.

Journal: Genetics

Authors' code: SillySabertooth/Neandertal_trans-eQTLs (no license), myersgroup.github.io/relate (no license), 35ajstern/clues (no license)

Status: code verified, 17 files readable, 10 matches

[38045] doi:10.1093/nar/gkad049 [paper, repository]

LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5' single-cell RNA-Seq.

Journal: Nucleic acids research

Authors' code: broadinstitute/inferCNV (other), wmckerrow/5pL1sc (AGPL-3.0), Zenodo 7541408 (other-open)

Status: code verified, 91 files readable, 2 matches

[38046] doi:10.1093/procel/pwac006 [paper, data]

Resolving the lineage relationship between malignant cells and vascular cells in glioblastomas.

Journal: Protein & cell

Status: data only, 1 dataset cited

[38047] doi:10.1093/scan/nsad007 [paper, repository]

The psychometric properties and clinical utility of neural measures of reward processing.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF mvpxw (no license)

Status: code found, still to be checked

[38048] doi:10.1093/scan/nsad011 [paper, data]

Neural responses to biological motion distinguish autistic and schizotypal traits.

Journal: Social cognitive and affective neuroscience

Status: code on request, 1 dataset cited

[38049] doi:10.1093/scan/nsad014 [paper, repository]

The role of objecthood and animacy in apparent movement processing.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF jntqz (no license)

Status: code verified, 2 files readable

[38050] doi:10.1093/scan/nsad016 [paper, data]

Through the looking glass: the neural basis of self-concept in young adults with antisocial trajectories.

Journal: Social cognitive and affective neuroscience

Status: code on request, 1 dataset cited

[38051] doi:10.1093/sleep/zsac301 [paper]

Atypical hypnotic compound ML297 restores sleep architecture immediately following emotionally valenced learning, to promote memory consolidation and hippocampal network activation during recall.

Journal: Sleep

Status: code on request

[38052] doi:10.1098/rsos.221116 [paper, data]

Wireless-controlled cubic neural stimulator for free-moving animals.

Journal: Royal Society open science

Status: data only, 1 dataset cited

[38053] doi:10.1111/adb.13268 [paper, data]

The complexity of cortical folding is reduced in chronic cocaine users.

Journal: Addiction biology

Status: data only, 1 dataset cited

[38054] doi:10.1126/sciadv.add5220 [paper]

Mitochondrial pyruvate metabolism regulates the activation of quiescent adult neural stem cells.

Journal: Science advances

Status: data only

[38055] doi:10.1126/sciadv.ade1249 [paper, repository]

Functional imaging and quantification of multineuronal olfactory responses in <i>C. elegans</i>.

Journal: Science advances

Authors' code: Zenodo 7563053 (CC-BY-4.0), samuellab/celegans-sensory-code (MIT)

Status: code verified, 267 files readable, 1 match

[38056] doi:10.1167/iovs.64.3.8 [paper, data]

Single-Cell Characterization of the Frizzled 5 (Fz5) Mutant Mouse and Human Persistent Fetal Vasculature (PFV).

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[38057] doi:10.1172/jci147087 [paper, repository]

Single-cell RNA sequencing and spatial transcriptomics reveal cancer-associated fibroblasts in glioblastoma with protumoral effects.

Journal: The Journal of clinical investigation

Authors' code: alexanderchang1/gbm_caf_open (GPL-3.0)

Status: code verified, 7 files readable

[38058] doi:10.1172/jci166408 [paper, repository]

Highly synchronized cortical circuit dynamics mediate spontaneous pain in mice.

Journal: The Journal of clinical investigation

Authors' code: harnett/Shiqian-analysis (no license)

Status: code verified, 45 files readable, 5 matches

[38059] doi:10.12998/wjcc.v11.i7.1467 [paper]

Analysis of differentially expressed genes related to cerebral ischaemia in young rats based on the Gene Expression Omnibus database.

Journal: World journal of clinical cases

Status: data only

[38060] doi:10.1523/jneurosci.1192-22.2023 [paper, repository]

Severely Attenuated Visual Feedback Processing in Children on the Autism Spectrum.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: neurobs.com (no license), Zenodo 6368625 (other-open), cognitiveneurolab/illusory-contours (MIT)

Status: code verified, 4 files readable

[38061] doi:10.2147/jir.s398775 [paper, repository]

A Novel Prognostic Marker and Therapeutic Target Associated with Glioma Progression in a Tumor Immune Microenvironment.

Journal: Journal of inflammation research

Authors' code: dovepress.com/get_supplementary_file.php (no license)

Status: code verified

[38062] doi:10.3389/fcell.2023.1073807 [paper, data]

Aberrant lipid accumulation in the mouse visceral yolk sac resulting from maternal diabetes and obesity.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[38063] doi:10.3389/fnhum.2023.1113971 [paper, repository]

Concussions in young adult athletes: No effect on cerebral white matter.

Journal: Frontiers in human neuroscience

Authors' code: pnlbwh/pnl_randomise (no license)

Status: code verified, 19 files readable, 1 match

[38064] doi:10.3390/biomedicines11030748 [paper, data]

The Association between Dysbiosis and Neurological Conditions Often Manifesting with Chronic Pain.

Journal: Biomedicines

Status: data only, 1 dataset cited

[38065] doi:10.3390/cells12050780 [paper, data]

Sex Differences between Neuronal Loss and the Early Onset of Amyloid Deposits and Behavioral Consequences in 5xFAD Transgenic Mouse as a Model for Alzheimer's Disease.

Journal: Cells

Status: data only, 1 dataset cited

[38066] doi:10.3390/diagnostics13050925 [paper, data]

Hybrid Multilevel Thresholding Image Segmentation Approach for Brain MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[38067] doi:10.3390/genes14030626 [paper, repository]

Deep Learning-Based Feature Extraction with MRI Data in Neuroimaging Genetics for Alzheimer's Disease.

Journal: Genes

Authors' code: Dipnil07 (no license)

Status: code verified

[38068] doi:10.4103/1673-5374.350188 [paper, data]

Role of the histone methyltransferases Ezh2 and Suv4-20h1/Suv4-20h2 in neurogenesis.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[38069] doi:10.5935/0004-2749.20230015 [paper, data]

Bilateral interstitial keratitis in a patient with presumed brain tuberculoma.

Journal: Arquivos brasileiros de oftalmologia

Status: data only, 2 datasets cited

Tuesday, 28 February 2023 (26 papers, 11 on this page)

[38070] doi:10.1002/hbm.26247 [paper, repository]

Functional hierarchy of the angular gyrus and its underlying genetic architecture.

Journal: Human brain mapping

Authors' code: BMHLab/AHBAprocessing (no license)

Status: code verified, 386 files readable

[38071] doi:10.1002/hbm.26249 [paper, data]

A meta-analysis of the neural substrates of monetary reward anticipation and outcome in alcohol use disorder.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[38072] doi:10.1002/hbm.26255 [paper, data]

Explainable fMRI-based brain decoding via spatial temporal-pyramid graph convolutional network.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[38073] doi:10.1016/j.celrep.2023.112192 [paper]

Teneurin trans-axonal signaling prunes topographically missorted axons.

Journal: Cell reports

Status: code on request

[38074] doi:10.1016/j.celrep.2023.112194 [paper, data]

Single-cell multiome sequencing clarifies enteric glial diversity and identifies an intraganglionic population poised for neurogenesis.

Journal: Cell reports

Status: data only, 1 dataset cited

[38075] doi:10.1016/j.crmeth.2023.100414 [paper]

High-efficiency pharmacogenetic ablation of oligodendrocyte progenitor cells in the adult mouse CNS.

Journal: Cell reports methods

Status: code on request

[38076] doi:10.1016/j.isci.2023.106277 [paper]

Administration of prosaposin-derived neurotrophic factor to neural tube defects facilitates regeneration and restores neurological functions.

Journal: iScience

Status: code on request

[38077] doi:10.1016/j.isci.2023.106295 [paper, repository]

A model of decentralized vision in the sea urchin &lt;i&gt;Diadema africanum&lt;/i&gt;.

Journal: iScience

Authors' code: lacameralab/diadema (no license)

Status: code verified, 20 files readable, 11 matches

[38078] doi:10.1017/s0033291723000028 [paper]

Excitatory brain stimulation over the left dorsolateral prefrontal cortex enhances voluntary distraction in depressed patients.

Journal: Psychological medicine

Status: code on request

[38079] doi:10.1038/s41467-023-36642-6 [paper, data]

Chemogenetic attenuation of cortical seizures in nonhuman primates.

Journal: Nature communications

Status: code on request, 1 dataset cited

[38080] doi:10.1038/s41467-023-36800-w [paper, repository]

Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat.

Journal: Nature communications

Authors' code: Wei-BioMath/NeuronChat (GPL-3.0), Wei-BioMath/NeuronChatAnalysis2022 (no license), Zenodo 7600421 (other-open)

Status: code verified, 22 files readable, 18 matches

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