Every paper, by date: page 171

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 171 of 200: 28 February 2023 to 17 February 2023.

Tuesday, 28 February 2023 (26 papers, 15 on this page)

[38081] doi:10.1073/pnas.2219635120 [paper, data]

Transcranial magnetic stimulation to frontal but not occipital cortex disrupts endogenous attention.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38082] doi:10.1101/2023.02.27.530185 [paper, repository]

A novel implementation of spinal fMRI demonstrates segmental organisation of functionally connected networks in the cervical spinal cord: A test-retest reliability study

Journal: bioRxiv (preprint)

Authors' code: OSF u8rbq (no license)

Status: empty repository

[38083] doi:10.1128/mbio.03391-22 [paper, data]

Cerebral Malaria Is Regulated by Host-Mediated Changes in <i>Plasmodium</i> Gene Expression.

Journal: mBio

Status: data only, 1 dataset cited

[38084] doi:10.1186/s12864-023-09188-6 [paper, data]

Brain fatty acid and transcriptome profiles of pig fed diets with different levels of soybean oil.

Journal: BMC genomics

Status: data only, 7 datasets cited

[38085] doi:10.1186/s12974-023-02739-4 [paper, data]

A short peptide exerts neuroprotective effects on cerebral ischemia-reperfusion injury by reducing inflammation via the miR-6328/IKKβ/NF-κB axis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[38086] doi:10.1186/s12987-023-00414-7 [paper, data]

Epigenetics and stroke: role of DNA methylation and effect of aging on blood-brain barrier recovery.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[38087] doi:10.1186/s13578-023-00970-3 [paper, data]

ANGPTL2 binds MAG to efficiently enhance oligodendrocyte differentiation.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[38088] doi:10.15252/embr.202255789 [paper, repository]

A combinatorial panel for flow cytometry-based isolation of enteric nervous system cells from human intestine.

Journal: EMBO reports

Authors' code: jondawi/pediatric-scRNAseq (no license)

Status: code verified, 1 file readable

[38089] doi:10.2196/42324 [paper, data]

Classifying COVID-19 Patients From Chest X-ray Images Using Hybrid Machine Learning Techniques: Development and Evaluation.

Journal: JMIR formative research

Status: data only, 3 datasets cited

[38090] doi:10.26508/lsa.202201843 [paper, data]

Regulatory de novo mutations underlying intellectual disability.

Journal: Life science alliance

Status: data only, 1 dataset cited

[38091] doi:10.3389/fneur.2023.1126729 [paper]

Novel mutations in the ABCD1 gene caused adrenomyeloneuropathy in the Chinese population.

Journal: Frontiers in neurology

Status: data only

[38092] doi:10.3389/fnins.2023.989512 [paper, repository]

Total sleep deprivation selectively impairs motor preparation sub-stages in visual search task: Evidence from lateralized readiness potentials.

Journal: Frontiers in neuroscience

Authors' code: lucklab/erplab (GPL-3.0)

Status: code verified, 863 files readable, 2 matches

[38093] doi:10.3390/diagnostics13050911 [paper, repository]

Prediction of the Topography of the Corticospinal Tract on T1-Weighted MR Images Using Deep-Learning-Based Segmentation.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: MIC-DKFZ/nnUNet (Apache-2.0)

Status: code verified, 237 files readable

[38094] doi:10.7554/elife.78729 [paper, repository]

Sensory input-dependent gain modulation of the optokinetic nystagmus by mid-infrared stimulation in pigeons.

Journal: eLife

Authors' code: supp:PMC9977280/elife-78729-code1.zip (no license)

Status: code verified, 1 file readable

[38095] doi:10.7554/elife.80517 [paper, repository]

Prolonged partner separation erodes nucleus accumbens transcriptional signatures of pair bonding in male prairie voles.

Journal: eLife

Authors' code: donaldsonlab/separationRNAseq (GPL-3.0)

Status: code verified, 36 files readable, 10 matches

Monday, 27 February 2023 (22 papers)

[38096] doi:10.1002/hbm.26243 [paper]

Prediction of suicidality in bipolar disorder using variability of intrinsic brain activity and machine learning.

Journal: Human brain mapping

Status: code on request

[38097] doi:10.1002/hbm.26250 [paper, repository]

Theta-gamma phase-amplitude coupling in auditory cortex is modulated by language proficiency.

Journal: Human brain mapping

Authors' code: OSF svwb8 (no license)

Status: code verified, 11 files readable

[38098] doi:10.1016/j.dib.2023.109013 [paper, data]

Data on a novel approach examining the role of the cerebellum in gait performance improvement in patients with Parkinson disease receiving neurologic music therapy.

Journal: Data in brief

Status: data only, 6 datasets cited

[38099] doi:10.1016/j.isci.2023.106271 [paper]

Non-canonical function of DPP4 promotes cognitive impairment through ERp29-associated mitochondrial calcium overload in diabetes.

Journal: iScience

Status: code on request

[38100] doi:10.1016/j.isci.2023.106284 [paper]

Noradrenergic pathway from the locus coeruleus to heart is implicated in modulating SUDEP.

Journal: iScience

Status: code on request

[38101] doi:10.1016/j.nicl.2023.103363 [paper, data]

The link between static and dynamic brain functional network connectivity and genetic risk of Alzheimer's disease.

Journal: NeuroImage. Clinical

Status: data only, 2 datasets cited

[38102] doi:10.1038/s41380-023-01994-4 [paper, repository]

Structured tracking of alcohol reinforcement (STAR) for basic and translational alcohol research.

Journal: Molecular psychiatry

Authors' code: Siciliano-Lab/STAR (no license)

Status: empty repository

[38103] doi:10.1038/s41398-023-02370-0 [paper, data]

Cross-tissue correlations of genome-wide DNA methylation in Japanese live human brain and blood, saliva, and buccal epithelial tissues.

Journal: Translational psychiatry

Status: data only, 11 datasets cited

[38104] doi:10.1038/s41419-023-05573-x [paper, data]

Dysfunctional mitochondria accumulate in a skeletal muscle knockout model of Smn1, the causal gene of spinal muscular atrophy.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[38105] doi:10.1038/s41587-023-01663-5 [paper, repository]

scPrisma infers, filters and enhances topological signals in single-cell data using spectral template matching.

Journal: Nature biotechnology

Authors' code: nitzanlab/scPrisma (MIT)

Status: code verified, 27 files readable, 10 matches

[38106] doi:10.1038/s41598-023-29909-x [paper, data]

Delta (B1.617.2) variant of SARS-CoV-2 induces severe neurotropic patterns in K18-hACE2 mice.

Journal: Scientific reports

Status: data only, 3 datasets cited

[38107] doi:10.1038/s41598-023-30265-z [paper, repository]

Serial dependencies between locomotion and visual space.

Journal: Scientific reports

Authors' code: OSF pvzx9 (no license)

Status: code verified, 11 files readable

[38108] doi:10.1038/s41598-023-30552-9 [paper, data]

Changes in task performance and frontal cortex activation within and over sessions during the n-back task.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38109] doi:10.1038/s43856-023-00262-4 [paper, repository]

MRI-based deep learning can discriminate between temporal lobe epilepsy, Alzheimer's disease, and healthy controls.

Journal: Communications medicine

Authors' code: Zenodo 7621235 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[38110] doi:10.1073/pnas.2120536120 [paper, repository]

Mitotic outcomes and errors in fibrous environments.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sarkarapurba/Mitotic-outcomes-and-errors-in-fibrous-environments (no license)

Status: code verified, 1 file readable, 3 matches

[38111] doi:10.1073/pnas.2212646120 [paper, data]

Microglia phagocytosis mediates the volume and function of the rat sexually dimorphic nucleus of the preoptic area.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38112] doi:10.1186/s13148-023-01446-4 [paper, repository]

Regulatory networks driving expression of genes critical for glioblastoma are controlled by the transcription factor c-Jun and the pre-existing epigenetic modifications.

Journal: Clinical epigenetics

Authors' code: ajroura22/glioma_TFBS (GPL-3.0)

Status: code verified, 3 files readable, 13 matches

[38113] doi:10.1371/journal.pone.0282268 [paper, repository]

EPViz: A flexible and lightweight visualizer to facilitate predictive modeling for multi-channel EEG.

Journal: PloS one

Authors' code: jcraley/jhu-sz-detect (no license)

Status: code verified, 64 files readable, 10 matches

[38114] doi:10.1523/eneuro.0438-22.2023 [paper, data]

Assistive Loading Promotes Goal-Directed Tuning of Stretch Reflex Gains.

Journal: eNeuro

Status: data only, 1 dataset cited

[38115] doi:10.3389/fcell.2023.1106595 [paper, repository]

Coordinated regulation of Cdc42ep1, actin, and septin filaments during neural crest cell migration.

Journal: Frontiers in cell and developmental biology

Authors' code: tsygankov-lab/Filament_Structure_Classification (no license)

Status: code verified, 21 files readable, 2 matches

[38116] doi:10.3389/fphar.2023.1138556 [paper, data]

Kv7-specific activators hyperpolarize resting membrane potential and modulate human iPSC-derived sensory neuron excitability.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[38117] doi:10.7554/elife.82580 [paper, repository]

THINGS-data, a multimodal collection of large-scale datasets for investigating object representations in human brain and behavior.

Journal: eLife

Authors' code: ViCCo-Group/THINGS-data (CC0-1.0), OSF f5rn6 (no license)

Status: code verified, 55 files readable, 31 matches

Sunday, 26 February 2023 (2 papers)

[38118] doi:10.3390/diagnostics13050887 [paper, data]

Syndrome Pattern Recognition Method Using Sensed Patient Data for Neurodegenerative Disease Progression Identification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[38119] doi:10.3390/jpm13030419 [paper, repository]

Age and Sex-Related Effects on Single-Subject Gray Matter Networks in Healthy Participants.

Journal: Journal of personalized medicine

Authors' code: bettytijms/Single_Subject_Grey_Matter_Networks (MIT)

Status: code verified, 15 files readable

Saturday, 25 February 2023 (14 papers)

[38120] doi:10.1002/hbm.26234 [paper, repository]

Reliability and clinical utility of spatially constrained estimates of intrinsic functional networks from very short fMRI scans.

Journal: Human brain mapping

Authors' code: trendscenter.org/software (no license)

Status: code verified

[38121] doi:10.1002/hbm.26244 [paper, repository]

Reproducibility of cerebral perfusion measurements using BOLD delay.

Journal: Human brain mapping

Authors' code: ahmedaak/BOLD_delay_repro (no license)

Status: code verified, 24 files readable, 7 matches

[38122] doi:10.1007/s12035-023-03253-7 [paper, repository]

A Circular RNA Expressed from the FAT3 Locus Regulates Neural Development.

Journal: Molecular neurobiology

Authors' code: snakemake.readthedocs.io (no license), scanpy.readthedocs.io (no license)

Status: code verified

[38123] doi:10.1016/j.isci.2023.106273 [paper]

Dopey2 and Pcdh7 orchestrate the development of embryonic neural stem cells/ progenitors in zebrafish.

Journal: iScience

Status: code on request

[38124] doi:10.1016/j.media.2023.102789 [paper, repository]

SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining.

Journal: Medical image analysis

Authors' code: BBillot/SynthSeg (Apache-2.0), MIC-DKFZ/nnUNet (Apache-2.0), neerakara/test-time-adaptable-neural-networks-for-domain-generalization (no license), cchen-cc/SIFA (no license)

Status: code verified, 335 files readable, 13 matches

[38125] doi:10.1016/j.neuroimage.2023.119972 [paper, repository]

Less is more: balancing noise reduction and data retention in fMRI with data-driven scrubbing.

Journal: NeuroImage

Authors' code: damondpham/projection-scrubbing (GPL-3.0), thomasyeolab/cbig (MIT), mandymejia/fMRIscrub (no license)

Status: code verified, 2,063 files readable, 16 matches

[38126] doi:10.1016/j.xpro.2023.102134 [paper]

Preparation of chaperone-loaded neural stem cell-derived extracellular vesicles to reduce protein aggregation in Huntington's disease cellular models.

Journal: STAR protocols

Status: code on request

[38127] doi:10.1038/s41467-023-36790-9 [paper, repository]

A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data.

Journal: Nature communications

Authors' code: AntonioDeFalco/SCEVAN (GPL-3.0), Zenodo 7529542 (CC-BY-4.0)

Status: code verified, 44 files readable, 11 matches

[38128] doi:10.1038/s41537-023-00338-z [paper]

Resting-state brain functional alterations and their genetic mechanisms in drug-naive first-episode psychosis.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[38129] doi:10.1038/s41598-023-30309-4 [paper, data]

Radiogenomic classification for MGMT promoter methylation status using multi-omics fused feature space for least invasive diagnosis through mpMRI scans.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38130] doi:10.1038/s41598-023-30325-4 [paper, repository]

Movement characteristics impact decision-making and vice versa.

Journal: Scientific reports

Authors' code: OSF dk7a2 (no license)

Status: code verified, 7 files readable, 8 matches

[38131] doi:10.3390/antiox12030582 [paper, data]

Voltage-Gated Proton Channel Hv1 Regulates Neuroinflammation and Dopaminergic Neurodegeneration in Parkinson's Disease Models.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

[38132] doi:10.3390/brainsci13030400 [paper, data]

An Efficient Framework to Detect Intracranial Hemorrhage Using Hybrid Deep Neural Networks.

Journal: Brain sciences

Status: data only, 1 dataset cited

[38133] doi:10.3390/ijerph20054150 [paper, repository]

Impact of Virtual Reality Cognitive and Motor Exercises on Brain Health.

Journal: International journal of environmental research and public health

Authors' code: doi:10.12751/incf.ni2019.0053 (no license)

Status: code verified

Friday, 24 February 2023 (31 papers)

[38134] doi:10.1016/j.cub.2023.02.013 [paper, repository]

Injury primes mutation-bearing astrocytes for dedifferentiation in later life.

Journal: Current biology : CB

Authors' code: nf-core/chipseq (MIT), Zenodo 3240506 (CC-BY-4.0)

Status: code verified, 20 files readable

[38135] doi:10.1016/j.dcn.2023.101223 [paper, repository]

The role of brain structure in the association between pubertal timing and depression risk in an early adolescent sample (the ABCD Study®): A registered report.

Journal: Developmental cognitive neuroscience

Authors' code: niamhmacsweeney/ABCD_puberty_depression (no license)

Status: code verified, 61 files readable, 15 matches

[38136] doi:10.1016/j.isci.2023.106264 [paper]

Microglia depletion prevents lactation by inhibition of prolactin secretion.

Journal: iScience

Status: code on request

[38137] doi:10.1016/j.isci.2023.106266 [paper, repository]

Dehydrated &lt;i&gt;Drosophila melanogaster&lt;/i&gt; track a water plume in tethered flight.

Journal: iScience

Authors' code: figshare 20387580 (CC-BY-4.0)

Status: code verified, 11 files readable

[38138] doi:10.1016/j.nicl.2023.103359 [paper, repository]

Resting-state functional connectivity of the raphe nuclei in major depressive Disorder: A Multi-site study.

Journal: NeuroImage. Clinical

Authors' code: zhangyj0430/2022-Functional-Connectivity-of-Raphe-Nuclei-in-MDD (no license)

Status: code verified, 20 files readable, 1 match

[38139] doi:10.1016/j.redox.2023.102643 [paper, data]

Mitochondrial cholesterol: Metabolism and impact on redox biology and disease.

Journal: Redox biology

Status: data only, 7 datasets cited

[38140] doi:10.1038/s41467-023-36456-6 [paper, repository]

Social complexity, life-history and lineage influence the molecular basis of castes in vespid wasps.

Journal: Nature communications

Authors' code: sumner-lab/multispecies_paper_ml (MIT), chriswyatt1/Protein_blast_and_taxonomy (no license), Zenodo 7521827 (other-open), Zenodo 7521834 (other-open), chriswyatt1/trinity_to_svm (no license)

Status: code verified, 114 files readable, 8 matches

[38141] doi:10.1038/s41467-023-36641-7 [paper, repository]

An analgesic pathway from parvocellular oxytocin neurons to the periaqueductal gray in rats.

Journal: Nature communications

Authors' code: Etienneclcr/GRAB_PAG (no license), Etienneclcr/ephy-in-vivo-PAG (no license)

Status: code verified, 19 files readable, 9 matches

[38142] doi:10.1038/s41467-023-36728-1 [paper]

Spintronic leaky-integrate-fire spiking neurons with self-reset and winner-takes-all for neuromorphic computing.

Journal: Nature communications

Status: code on request

[38143] doi:10.1083/jcb.202106081 [paper, data]

EVL and MIM/MTSS1 regulate actin cytoskeletal remodeling to promote dendritic filopodia in neurons.

Journal: The Journal of cell biology

Status: data only, 3 datasets cited

[38144] doi:10.1093/braincomms/fcad047 [paper, repository]

Large-scale transient peri-ictal perfusion magnetic resonance imaging abnormalities detected by quantitative image analysis.

Journal: Brain communications

Authors' code: SCAN-NRAD/DL-DiReCT (BSD-3-Clause), SCAN-NRAD/qMriMaps (BSD-3-Clause)

Status: code verified, 22 files readable, 1 match

[38145] doi:10.1093/jamiaopen/ooad014 [paper, repository]

Extraction of clinical phenotypes for Alzheimer's disease dementia from clinical notes using natural language processing.

Journal: JAMIA open

Authors' code: doi:10.5061/dryad.0vt4b8h3g (no license), community.linguamatics.com/queries (no license), Zenodo 7616180 (MIT)

Status: code verified

[38146] doi:10.1126/sciadv.ade2035 [paper, data]

RNA G-quadruplex organizes stress granule assembly through DNAPTP6 in neurons.

Journal: Science advances

Status: data only, 1 dataset cited

[38147] doi:10.1186/s12864-023-09186-8 [paper, data]

Transcriptomic profiling of the developing brain revealed cell-type and brain-region specificity in a mouse model of prenatal stress.

Journal: BMC genomics

Status: data only, 1 dataset cited

[38148] doi:10.1186/s12915-023-01529-x [paper, repository]

Neural ensembles in the murine medial prefrontal cortex process distinct information during visual perceptual learning.

Journal: BMC biology

Authors' code: liang-bo/AutoStereota (MIT)

Status: code verified, 16 files readable

[38149] doi:10.1186/s12974-023-02727-8 [paper, data]

Myeloid deficiency of the intrinsic clock protein BMAL1 accelerates cognitive aging by disrupting microglial synaptic pruning.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[38150] doi:10.1186/s12974-023-02735-8 [paper]

Depletion and activation of microglia impact metabolic connectivity of the mouse brain.

Journal: Journal of neuroinflammation

Status: code on request

[38151] doi:10.1371/journal.pone.0277630 [paper, data]

Single-cell RNA sequencing analysis of human Alzheimer's disease brain samples reveals neuronal and glial specific cells differential expression.

Journal: PloS one

Status: data only, 1 dataset cited

[38152] doi:10.1371/journal.pone.0279736 [paper, data]

Lymphocyte deficiency alters the transcriptomes of oligodendrocytes, but not astrocytes or microglia.

Journal: PloS one

Status: data only, 1 dataset cited

[38153] doi:10.1371/journal.pone.0282110 [paper, repository]

Learning deep abdominal CT registration through adaptive loss weighting and synthetic data generation.

Journal: PloS one

Authors' code: jpdefrutos/DDMR (MIT)

Status: code verified, 92 files readable, 12 matches

[38154] doi:10.1523/eneuro.0228-22.2022 [paper, repository]

Manipulating the Rapid Consolidation Periods in a Learning Task Affects General Skills More than Statistical Learning and Changes the Dynamics of Learning.

Journal: eNeuro

Authors' code: vekteo/ASRT_rapid_consolidation (MIT), Zenodo 7124730 (other-open), Zenodo 7253644 (other-open), Zenodo 7100178 (other-open), vekteo/nback_jspsych (MIT), vekteo/asrt_jspsych (MIT), vekteo/asrt_pdp_jspsych (MIT)

Status: code verified, 457 files readable

[38155] doi:10.1523/eneuro.0243-22.2023 [paper, repository]

Effect of the Matrix Metalloproteinase Inhibitor Doxycycline on Human Trace Fear Memory.

Journal: eNeuro

Authors' code: OSF uqtr5 (no license)

Status: code verified, 1,764 files readable, 5 matches

[38156] doi:10.1523/eneuro.0257-22.2022 [paper, repository]

BrainWAVE: A Flexible Method for Noninvasive Stimulation of Brain Rhythms across Species.

Journal: eNeuro

Authors' code: singerlabgt/BrainWAVE (GPL-3.0)

Status: code verified, 26 files readable, 6 matches

[38157] doi:10.1523/eneuro.0356-20.2023 [paper, repository]

Functional Changes in GABA and Glutamate during Motor Learning.

Journal: eNeuro

Authors' code: OSF qja95 (no license)

Status: code verified, 20 files readable

[38158] doi:10.3389/fcimb.2023.1121445 [paper, data]

Tryptophan metabolism as bridge between gut microbiota and brain in chronic social defeat stress-induced depression mice.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[38159] doi:10.3389/fneur.2023.1133449 [paper, data]

Evaluating the association between <i>DNM1L</i> variants and Parkinson's disease in the Chinese population.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[38160] doi:10.3389/fnins.2023.1047778 [paper, data]

Blood-brain barrier endothelial cells in neurodegenerative diseases: Signals from the "barrier".

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[38161] doi:10.3389/fnins.2023.1064000 [paper, repository]

The impact of vasomotion on analysis of rodent fMRI data.

Journal: Frontiers in neuroscience

Authors' code: TheFaberLab/HDO (no license)

Status: code verified, 9 files readable, 3 matches

[38162] doi:10.3389/fonc.2023.1100532 [paper, data]

Sporadic spinal psammomatous malignant melanotic nerve sheath tumor: A case report and literature review.

Journal: Frontiers in oncology

Status: data only, 2 datasets cited

[38163] doi:10.3390/brainsci13030391 [paper, repository]

Diffusion Measures of Subcortical Structures Using High-Field MRI.

Journal: Brain sciences

Authors' code: dsi-studio.labsolver.org (no license)

Status: code verified

[38164] doi:10.3390/diagnostics13050872 [paper, data]

Efficient U-Net Architecture with Multiple Encoders and Attention Mechanism Decoders for Brain Tumor Segmentation.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Thursday, 23 February 2023 (34 papers)

[38165] doi:10.1016/j.cmet.2023.02.008 [paper, repository]

Complementary lateral hypothalamic populations resist hunger pressure to balance nutritional and social needs.

Journal: Cell metabolism

Authors' code: flatironinstitute/CaImAn (GPL-2.0)

Status: code verified, 118 files readable, 2 matches

[38166] doi:10.1016/j.dib.2023.109006 [paper, data]

Microwave sensing dataset for noninvasive monitoring of ventricle enlargement due to Alzheimer's disease.

Journal: Data in brief

Status: data only, 3 datasets cited

[38167] doi:10.1016/j.neuron.2023.02.001 [paper]

EndophilinA-dependent coupling between activity-induced calcium influx and synaptic autophagy is disrupted by a Parkinson-risk mutation.

Journal: Neuron

Status: code on request

[38168] doi:10.1016/j.pneurobio.2023.102425 [paper, data]

WWOX P47T partial loss-of-function mutation induces epilepsy, progressive neuroinflammation, and cerebellar degeneration in mice phenocopying human SCAR12.

Journal: Progress in neurobiology

Status: data only, 1 dataset cited

[38169] doi:10.1016/j.stemcr.2023.01.012 [paper, data]

Granulin loss of function in human mature brain organoids implicates astrocytes in TDP-43 pathology.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[38170] doi:10.1038/s41467-023-36554-5 [paper, repository]

Low-dimensional encoding of decisions in parietal cortex reflects long-term training history.

Journal: Nature communications

Authors' code: latimerk/GMLM_dmc (GPL-3.0)

Status: code verified, 147 files readable, 18 matches

[38171] doi:10.1038/s41467-023-36579-w [paper, repository]

A bivalent remipede toxin promotes calcium release via ryanodine receptor activation.

Journal: Nature communications

Authors' code: TS404/SeqSpace (no license)

Status: code verified, 5 files readable

[38172] doi:10.1038/s41467-023-36583-0 [paper, repository]

Abstract representations emerge naturally in neural networks trained to perform multiple tasks.

Journal: Nature communications

Authors' code: wj2/disentangled (no license), Zenodo 7465963 (other-open)

Status: code verified, 44 files readable, 4 matches

[38173] doi:10.1038/s41467-023-36707-6 [paper, repository]

Spatial transcriptomics reveals niche-specific enrichment and vulnerabilities of radial glial stem-like cells in malignant gliomas.

Journal: Nature communications

Authors' code: figshare 21878748 (MIT)

Status: code verified, 3 files readable, 7 matches

[38174] doi:10.1038/s41467-023-36766-9 [paper, data]

Structure of human Na_V1.6 channel reveals Na⁺ selectivity and pore blockade by 4,9-anhydro-tetrodotoxin.

Journal: Nature communications

Status: data only, 4 datasets cited

[38175] doi:10.1038/s41537-023-00333-4 [paper, repository]

Preserved electrophysiological markers of confidence in schizophrenia spectrum disorder.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: nfaivre/meta_scz_public (no license)

Status: code verified, 125 files readable, 4 matches

[38176] doi:10.1038/s41588-023-01300-6 [paper, repository]

Brain expression quantitative trait locus and network analyses reveal downstream effects and putative drivers for brain-related diseases.

Journal: Nature genetics

Authors' code: molgenis/systemsgenetics (GPL-3.0), molgenis/metabrain (no license), secastel/aFC (no license), Zenodo 7376855 (CC-BY-4.0)

Status: code verified, 2,553 files readable, 21 matches

[38177] doi:10.1038/s41591-022-02141-2 [paper, data]

Vorasidenib and ivosidenib in IDH1-mutant low-grade glioma: a randomized, perioperative phase 1 trial.

Journal: Nature medicine

Status: data only, 1 dataset cited

[38178] doi:10.1038/s41597-023-01995-6 [paper, repository]

A large dataset of semantic ratings and its computational extension.

Journal: Scientific data

Authors' code: OSF n5vke (no license)

Status: code verified

[38179] doi:10.1038/s41598-023-29850-z [paper, repository]

Induction of primordial germ cell-like cells from common marmoset embryonic stem cells by inhibition of WNT and retinoic acid signaling.

Journal: Scientific reports

Authors' code: s-andrews/FastQC (GPL-3.0), FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 193 files readable, 2 matches

[38180] doi:10.1038/s41598-023-30303-w [paper, repository]

Zebrafish Larvae Position Tracker (Z-LaP Tracker): a high-throughput deep-learning behavioral approach for the identification of calcineurin pathway-modulating drugs using zebrafish larvae.

Journal: Scientific reports

Authors' code: brown-ccv/Automated-Analysis-of-Zebrafish (no license)

Status: code verified, 9 files readable, 5 matches

[38181] doi:10.1111/cns.14115 [paper]

The association of magnetoencephalography high-frequency oscillations with epilepsy types and a ripple-based method with source-level connectivity for mapping epilepsy sources.

Journal: CNS neuroscience & therapeutics

Status: code on request

[38182] doi:10.1186/s10020-023-00621-w [paper, data]

Paediatric sepsis-associated encephalopathy (SAE): a comprehensive review.

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 6 datasets cited

[38183] doi:10.1371/journal.pcbi.1010924 [paper, repository]

A behavioral and modeling study of control algorithms underlying the translational optomotor response in larval zebrafish with implications for neural circuit function.

Journal: PLoS computational biology

Authors' code: johnholman/omr-algorithms (no license)

Status: code verified, 119 files readable, 7 matches

[38184] doi:10.1371/journal.pone.0282082 [paper, repository]

Deep learning for the diagnosis of mesial temporal lobe epilepsy.

Journal: PloS one

Authors' code: keras.io (no license)

Status: code verified

[38185] doi:10.3389/fnagi.2022.943566 [paper, repository]

Patterns of structure-function association in normal aging and in Alzheimer's disease: Screening for mild cognitive impairment and dementia with ML regression and classification models.

Journal: Frontiers in aging neuroscience

Authors' code: bi-dac.com (no license)

Status: code found, still to be checked

[38186] doi:10.3389/fnbeh.2023.1122163 [paper, data]

Sex differences in amygdalohippocampal oscillations and neuronal activation in a rodent anxiety model and in response to infralimbic deep brain stimulation.

Journal: Frontiers in behavioral neuroscience

Status: data only, 2 datasets cited

[38187] doi:10.3389/fninf.2023.1067095 [paper, data]

A systematic comparison of deep learning methods for EEG time series analysis.

Journal: Frontiers in neuroinformatics

Status: code on request, 2 datasets cited

[38188] doi:10.3389/fpsyt.2023.1117817 [paper, repository]

Executive control network resting state fMRI functional and effective connectivity and delay discounting in cocaine dependent subjects compared to healthy controls.

Journal: Frontiers in psychiatry

Authors' code: OSF t723q (no license), OSF xykgm (no license)

Status: empty repository

[38189] doi:10.3390/biomedicines11030683 [paper, data]

Association of Cognitive Deficit with Glutamate and Insulin Signaling in a Rat Model of Parkinson's Disease.

Journal: Biomedicines

Status: data only, 2 datasets cited

[38190] doi:10.3390/biomedicines11030685 [paper, repository]

Sample Size Analysis for Machine Learning Clinical Validation Studies.

Journal: Biomedicines

Authors' code: GoldenholzLab/SSAML (MIT)

Status: code verified, 30 files readable, 1 match

[38191] doi:10.3390/cells12050704 [paper, repository]

Quanty-cFOS, a Novel ImageJ/Fiji Algorithm for Automated Counting of Immunoreactive Cells in Tissue Sections.

Journal: Cells

Authors' code: cberri/cFOS_ManualAnnotations_ImageJ-Fiji (no license), cberri/Quanty-cFOS (MIT)

Status: code verified, 4 files readable

[38192] doi:10.3390/diagnostics13050859 [paper, data]

Attention Deep Feature Extraction from Brain MRIs in Explainable Mode: DGXAINet.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[38193] doi:10.3390/diagnostics13050864 [paper, data]

Refined Automatic Brain Tumor Classification Using Hybrid Convolutional Neural Networks for MRI Scans.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[38194] doi:10.3390/s23052458 [paper, data]

Cross-Domain Transfer of EEG to EEG or ECG Learning for CNN Classification Models.

Journal: Sensors (Basel, Switzerland)

Status: data only, 4 datasets cited

[38195] doi:10.3758/s13415-023-01072-w [paper, data]

How uncertain are you? Disentangling expected and unexpected uncertainty in pupil-linked brain arousal during reversal learning.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

[38196] doi:10.3758/s13415-023-01074-8 [paper, repository]

Electrophysiological evidence for the enhancement of gesture-speech integration by linguistic predictability during multimodal discourse comprehension.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: hdl.handle.net/1839/ba1a5ac1-0fa7-4877-81a8-5d85ea35002c (no license)

Status: code verified

[38197] doi:10.7554/elife.80660 [paper, data]

A searchable image resource of <i>Drosophila</i> GAL4 driver expression patterns with single neuron resolution.

Journal: eLife

Status: data only, 2 datasets cited

[38198] doi:10.7554/elife.83035 [paper, repository]

Neural population dynamics of computing with synaptic modulations.

Journal: eLife

Authors' code: kaitken17/mpn (BSD-2-Clause)

Status: code verified, 16 files readable, 2 matches

Wednesday, 22 February 2023 (29 papers)

[38199] doi:10.1002/hbm.26230 [paper, repository]

Anxiety attenuates learning advantages conferred by statistical stability and induces loss of volatility-attuning in brain activity.

Journal: Human brain mapping

Authors' code: OSF 5m3dk (no license)

Status: code verified, 2 files readable, 2 matches

[38200] doi:10.1007/s12015-023-10512-6 [paper, data]

Exosomes induce neurogenesis of pluripotent P19 cells.

Journal: Stem cell reviews and reports

Status: data only, 1 dataset cited

[38201] doi:10.1016/j.celrep.2023.112143 [paper]

Notch-dependent binary fate choice regulates the Netrin pathway to control axon guidance of Drosophila visual projection neurons.

Journal: Cell reports

Status: code on request

[38202] doi:10.1016/j.ibneur.2023.02.004 [paper, data]

Voluntary running exercise modifies astrocytic population and features in the peri-infarct cortex.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[38203] doi:10.1038/s41586-023-05735-z [paper, data]

Essential elements of radical pair magnetosensitivity in Drosophila.

Journal: Nature

Status: data only, 1 dataset cited

[38204] doi:10.1038/s41598-023-29754-y [paper, data]

Effects of exogenous oxytocin and estradiol on resting-state functional connectivity in women and men.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38205] doi:10.1073/pnas.2204933120 [paper, data]

Conserved reduction of m&lt;sup&gt;6&lt;/sup&gt;A RNA modifications during aging and neurodegeneration is linked to changes in synaptic transcripts.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[38206] doi:10.1073/pnas.2210622120 [paper, repository]

Bayesian inference in ring attractor networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7615975 (other-open), drugowitschlab/bayesianringattractor (BSD-3-Clause)

Status: code verified, 32 files readable, 5 matches

[38207] doi:10.1073/pnas.2210839120 [paper, repository]

Inversion of pop-out for a distracting feature dimension in monkey visual cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.12751/g-node.l7xbnd (no license), Zenodo 6489014 (other-open), visionandcognition/tracker (no license)

Status: code verified, 161 files readable, 4 matches

[38208] doi:10.1073/pnas.2214539120 [paper, repository]

Cerebellar control of a unitary head direction sense.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gin.g-node.org/cezamelab/cerebellum_head-direction_mf (no license)

Status: code verified

[38209] doi:10.1101/2023.02.21.529200 [paper, data]

Myomatrix arrays for high-definition muscle recording

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[38210] doi:10.1126/sciadv.ade8500 [paper, repository]

Neural connectivity molecules best identify the heterogeneous clock and dopaminergic cell types in the <i>Drosophila</i> adult brain.

Journal: Science advances

Authors' code: Zenodo 7387695 (other-open), rosbashlab/scRNA-seq-clock-and-dopaminergic-neurons (MIT), rosbashlab/scrna_seq_clk_vs_dans (MIT)

Status: code verified, 15 files readable, 3 matches

[38211] doi:10.1126/sciadv.ade9909 [paper, repository]

A single-cell resolution gene expression atlas of the larval zebrafish brain.

Journal: Science advances

Authors' code: Zenodo 7308624 (other-open), ishainer/shainer_kuehn_et_al_2022 (no license)

Status: code verified, 4 files readable

[38212] doi:10.1172/jci.insight.165271 [paper]

Pursuing personalized medicine for depression by targeting the lateral or medial prefrontal cortex with Deep TMS.

Journal: JCI insight

Status: code on request

[38213] doi:10.1186/s13195-023-01184-y [paper, repository]

Investigating associations between blood metabolites, later life brain imaging measures, and genetic risk for Alzheimer's disease.

Journal: Alzheimer's research & therapy

Authors' code: beckigreen/metabolites-brain-ad-prs (MIT)

Status: code verified, 12 files readable, 7 matches

[38214] doi:10.1212/wnl.0000000000207081 [paper, data]

Association Between Regular Laxative Use and Incident Dementia in UK Biobank Participants.

Journal: Neurology

Status: data only, 1 dataset cited

[38215] doi:10.3389/fendo.2023.1129534 [paper, data]

Altered GnRH neuron and ovarian innervation characterize reproductive dysfunction linked to the Fragile X messenger ribonucleoprotein (<i>Fmr1</i>) gene mutation.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[38216] doi:10.3389/fimmu.2023.1117172 [paper, data]

The effects of microglia-associated neuroinflammation on Alzheimer's disease.

Journal: Frontiers in immunology

Status: data only, 4 datasets cited

[38217] doi:10.3389/fmed.2023.1085437 [paper, data]

Identifying patients with acute ischemic stroke within a 6-h window for the treatment of endovascular thrombectomy using deep learning and perfusion imaging.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[38218] doi:10.3389/fnins.2023.1132290 [paper, data]

Single-trial P300 classification algorithm based on centralized multi-person data fusion CNN.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[38219] doi:10.3389/fnmol.2023.1136398 [paper, repository]

Single-nucleus transcriptional profiling uncovers the reprogrammed metabolism of astrocytes in Alzheimer's disease.

Journal: Frontiers in molecular neuroscience

Authors' code: immunogenomics/harmony (no license)

Status: code verified, 32 files readable

[38220] doi:10.3390/brainsci13030379 [paper]

Selective Impairments in Fine Neural Tuning for Print in Chinese Children with Developmental Dyslexia.

Journal: Brain sciences

Status: code on request

[38221] doi:10.3390/cancers15051393 [paper, data]

Multimodal Treatments for Brain Metastases from Renal Cell Carcinoma: Results of a Multicentric Retrospective Study.

Journal: Cancers

Status: data only, 2 datasets cited

[38222] doi:10.3390/e25030401 [paper, repository]

Detecting Information Relays in Deep Neural Networks.

Journal: Entropy (Basel, Switzerland)

Authors' code: Hintzelab/Entropy-Detecting-Information-Relays-in-Deep-Neural-Networks (MIT), Zenodo 7660142 (CC-BY-4.0)

Status: code verified, 6 files readable

[38223] doi:10.3390/s23052424 [paper, repository]

BATMAN: A Brain-like Approach for Tracking Maritime Activity and Nuance.

Journal: Sensors (Basel, Switzerland)

Authors' code: RiversideResearchAIML/BATMAN (MIT)

Status: code verified, 67 files readable, 13 matches

[38224] doi:10.3390/s23052425 [paper, data]

Human Recognition Using Deep Neural Networks and Spatial Patterns of SSVEP Signals.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[38225] doi:10.7554/elife.75007 [paper, repository]

Intraparietal stimulation disrupts negative distractor effects in human multi-alternative decision-making.

Journal: eLife

Authors' code: Zenodo 7645609 (MIT), Zenodo 7645610 (MIT)

Status: code verified, 50 files readable, 1 match

[38226] doi:10.7554/elife.78512 [paper, repository]

Enteroendocrine cell lineages that differentially control feeding and gut motility.

Journal: eLife

Authors' code: jakaye/eec_scrna (BSD-3-Clause)

Status: code verified, 3 files readable, 1 match

[38227] doi:10.7554/elife.82467 [paper, repository]

The aperiodic exponent of subthalamic field potentials reflects excitation/inhibition balance in Parkinsonism.

Journal: eLife

Authors' code: supp:PMC10005762/elife-82467-code1.zip (no license)

Status: code verified, 24 files readable, 9 matches

Tuesday, 21 February 2023 (22 papers)

[38228] doi:10.1002/hbm.26239 [paper, repository]

Integrated diffusion image operator (iDIO): A pipeline for automated configuration and processing of diffusion MRI data.

Journal: Human brain mapping

Authors' code: iDIO4dMRI/iDIO (no license)

Status: code verified, 18 files readable, 13 matches

[38229] doi:10.1007/s11011-023-01171-0 [paper, repository]

Bioinformatics investigation on blood-based gene expressions of Alzheimer's disease revealed ORAI2 gene biomarker susceptibility: An explainable artificial intelligence-based approach.

Journal: Metabolic brain disease

Authors' code: karthiksekaran/alzheimer-biomarker-study-XAI (BSD-3-Clause)

Status: code verified, 3 files readable

[38230] doi:10.1016/j.isci.2023.106248 [paper, repository]

Symbiotic electroneural and musculoskeletal framework to encode proprioception via neurostimulation: ProprioStim.

Journal: iScience

Authors' code: modeldb:3810 (no license), Zenodo 7639313 (CC-BY-4.0), Zenodo 7347123 (CC-BY-4.0), neuroenglab/propriostim (no license)

Status: code verified, 332 files readable, 15 matches

[38231] doi:10.1016/j.neuroimage.2023.119958 [paper, repository]

Time-Lagged Multidimensional Pattern Connectivity (TL-MDPC): An EEG/MEG pattern transformation based functional connectivity metric.

Journal: NeuroImage

Authors' code: setareh10/MDPC (no license)

Status: code verified, 11 files readable, 1 match

[38232] doi:10.1021/acs.molpharmaceut.2c00768 [paper, data]

Standardized Preclinical &lt;i&gt;In Vitro&lt;/i&gt; Blood-Brain Barrier Mouse Assay Validates Endocytosis-Dependent Antibody Transcytosis Using Transferrin-Receptor-Mediated Pathways.

Journal: Molecular pharmaceutics

Status: data only, 1 dataset cited

[38233] doi:10.1038/s41380-023-01988-2 [paper, data]

GWAS-identified bipolar disorder risk allele in the FADS1/2 gene region links mood episodes and unsaturated fatty acid metabolism in mutant mice.

Journal: Molecular psychiatry

Status: data only, 8 datasets cited

[38234] doi:10.1038/s41392-023-01353-3 [paper, data]

Signaling pathways in Parkinson's disease: molecular mechanisms and therapeutic interventions.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[38235] doi:10.1073/pnas.2214996120 [paper, repository]

Encoding of 3D physical dimensions by face-selective cortical neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 20522892 (CC-BY-4.0)

Status: code verified, 14 files readable, 1 match

[38236] doi:10.1073/pnas.2215192120 [paper, repository]

Elevated dementia risk, cognitive decline, and hippocampal atrophy in multisite chronic pain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: tulab-brain/Multisite-chronic-pain (no license)

Status: code verified, 4 files readable

[38237] doi:10.1073/pnas.2216399120 [paper, repository]

Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: BBillot/SynthSeg (Apache-2.0)

Status: code verified, 48 files readable, 11 matches

[38238] doi:10.1186/s12868-023-00780-w [paper, repository]

Detection of neuronal OFF periods as low amplitude neural activity segments.

Journal: BMC neuroscience

Authors' code: sjoh4302/OFFAD (no license)

Status: code verified, 11 files readable, 6 matches

[38239] doi:10.1212/nxi.0000000000200091 [paper, data]

Immune Profiling Reveals the T-Cell Effect of Ocrelizumab in Early Relapsing-Remitting Multiple Sclerosis.

Journal: Neurology(R) neuroimmunology & neuroinflammation

Status: data only, 1 dataset cited

[38240] doi:10.1371/journal.pbio.3002013 [paper, repository]

A neuron model with unbalanced synaptic weights explains the asymmetric effects of anaesthesia on the auditory cortex.

Journal: PLoS biology

Authors' code: doi:10.12751/g-node.4s9mm4 (no license)

Status: code verified

[38241] doi:10.1371/journal.pcbi.1010527 [paper, repository]

Neural adaptation and fractional dynamics as a window to underlying neural excitability.

Journal: PLoS computational biology

Authors' code: supp:PMC9983885/pcbi.1010527.s002.zip (no license)

Status: code verified, 3 files readable, 1 match

[38242] doi:10.1371/journal.pone.0281840 [paper, data]

Oncometabolic role of mitochondrial sirtuins in glioma patients.

Journal: PloS one

Status: data only, 1 dataset cited

[38243] doi:10.1523/eneuro.0395-22.2022 [paper, data]

Pregabalin Silences Oxaliplatin-Activated Sensory Neurons to Relieve Cold Allodynia.

Journal: eNeuro

Status: data only, 1 dataset cited

[38244] doi:10.21037/atm-22-3712 [paper, repository]

Efficient volume-based localization and automatic labeling of intracranial depth electrodes.

Journal: Annals of translational medicine

Authors' code: zhaobaotian/DELLO (no license)

Status: code verified, 43 files readable, 4 matches

[38245] doi:10.3389/fnins.2023.1069639 [paper, repository]

Demonstrating quality control procedures for fMRI in DPABI.

Journal: Frontiers in neuroscience

Authors' code: chaogan-yan/paperscripts (no license)

Status: code verified, 224 files readable, 3 matches

[38246] doi:10.3390/ijms24054304 [paper, data]

Genetic Background Influence on Hippocampal Synaptic Plasticity: Frequency-Dependent Variations between an Inbred and an Outbred Mice Strain.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38247] doi:10.3390/nu15051077 [paper, data]

Stimulation of GHRH Neuron Axon Growth by Leptin and Impact of Nutrition during Suckling in Mice.

Journal: Nutrients

Status: data only, 1 dataset cited

[38248] doi:10.3390/s23052387 [paper, repository]

Online Learning for Wearable EEG-Based Emotion Classification.

Journal: Sensors (Basel, Switzerland)

Authors' code: HPI-CH/EEGEMO (no license)

Status: code verified, 18 files readable, 4 matches

[38249] doi:10.7554/elife.83108 [paper, data]

Cerebrospinal fluid-contacting neuron tracing reveals structural and functional connectivity for locomotion in the mouse spinal cord.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 20 February 2023 (24 papers)

[38250] doi:10.1002/hbm.26233 [paper]

Internet gaming disorder and tobacco use disorder share neural connectivity patterns between the subcortical and the motor network.

Journal: Human brain mapping

Status: code on request

[38251] doi:10.1007/s00406-023-01566-1 [paper]

Structure/function interrelationships and illness insight in patients with schizophrenia: a multimodal MRI data fusion study.

Journal: European archives of psychiatry and clinical neuroscience

Status: code on request

[38252] doi:10.1007/s13258-023-01369-7 [paper]

Trait - driven analysis of the 2p15p16.1 microdeletion syndrome suggests a complex pattern of interactions between candidate genes.

Journal: Genes & genomics

Status: code on request

[38253] doi:10.1016/j.dib.2023.108999 [paper, data]

Myeloarchitectonic cortical parcellation data for contemporary neuroimaging - the Vogt-Vogt legacy in the 21st century.

Journal: Data in brief

Status: data only, 1 dataset cited

[38254] doi:10.1016/j.isci.2023.106240 [paper]

Cocaine and habit training cause dendritic spine rearrangement in the prelimbic cortex.

Journal: iScience

Status: code on request

[38255] doi:10.1016/j.isci.2023.106242 [paper]

Bulk and mosaic deletions of <i>Egfr</i> reveal regionally defined gliogenesis in the developing mouse forebrain.

Journal: iScience

Status: code on request

[38256] doi:10.1016/j.isci.2023.106258 [paper]

Osmotically evoked PLCδ1-dependent translocation of ΔN-TRPV1 channels in rat supraoptic neurons.

Journal: iScience

Status: code on request

[38257] doi:10.1038/s41419-023-05611-8 [paper, data]

Differential regulation of H3K9/H3K14 acetylation by small molecules drives neuron-fate-induction of glioma cell.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[38258] doi:10.1038/s41467-023-36605-x [paper, repository]

Multivariate genomic architecture of cortical thickness and surface area at multiple levels of analysis.

Journal: Nature communications

Authors' code: GenomicSEM/GenomicSEM (GPL-3.0), Zenodo 7512951 (other-open), agrotzin/genomicsem (no license)

Status: code verified, 58 files readable, 8 matches

[38259] doi:10.1038/s41467-023-36643-5 [paper, repository]

Sleep cycle-dependent vascular dynamics in male mice and the predicted effects on perivascular cerebrospinal fluid flow and solute transport.

Journal: Nature communications

Authors' code: GliaLab/PVS-Sleep-Project (no license), Zenodo 7540534 (other-open), Zenodo 7579913 (other-open), glialab/pvsflow (GPL-3.0)

Status: code verified, 2,352 files readable, 10 matches

[38260] doi:10.1038/s41593-023-01260-4 [paper]

A wearable platform for closed-loop stimulation and recording of single-neuron and local field potential activity in freely moving humans.

Journal: Nature neuroscience

Status: code on request

[38261] doi:10.1038/s43587-023-00370-9 [paper, repository]

Chronic in vivo imaging defines age-dependent alterations of neurogenesis in the mouse hippocampus.

Journal: Nature aging

Authors' code: HelioScan/HelioScan (no license), JessbergerLab/AgingNeurogenesis_Imaging (no license)

Status: code verified, 217 files readable, 8 matches

[38262] doi:10.1152/ajpregu.00251.2022 [paper, repository]

Dynamic fluctuations in ascending heart-to-brain communication under mental stress.

Journal: American journal of physiology. Regulatory, integrative and comparative physiology

Authors' code: diegocandiar/brain_heart_svsdg (no license), saipai-hrv.com (no license)

Status: code verified, 3 files readable, 1 match

[38263] doi:10.1159/000528981 [paper, data]

Brain Biometry Reveals Impaired Brain Growth in Preterm Neonates with Intraventricular Hemorrhage.

Journal: Neonatology

Status: data only, 1 dataset cited

[38264] doi:10.1186/s12916-023-02766-1 [paper, repository]

Monocyte, neutrophil, and whole blood transcriptome dynamics following ischemic stroke.

Journal: BMC medicine

Authors' code: paulicm-UCD/gene_networks_stroke (BSD-2-Clause)

Status: code verified, 4 files readable, 4 matches

[38265] doi:10.1186/s13059-023-02850-y [paper, repository]

siVAE: interpretable deep generative models for single-cell transcriptomes.

Journal: Genome biology

Authors' code: quon-titative-biology/siVAE (MIT), Zenodo 7495207 (CC-BY-4.0)

Status: code verified, 341 files readable, 21 matches

[38266] doi:10.1186/s13073-023-01160-z [paper, data]

TREM2 splice isoforms generate soluble TREM2 species that disrupt long-term potentiation.

Journal: Genome medicine

Status: data only, 2 datasets cited

[38267] doi:10.1186/s13229-023-00540-x [paper, repository]

Impaired neurogenesis and neural progenitor fate choice in a human stem cell model of SETBP1 disorder.

Journal: Molecular autism

Authors' code: DanCF93/Cardo-et-al-2021 (no license)

Status: code verified, 14 files readable, 1 match

[38268] doi:10.3389/fcell.2023.1034604 [paper, repository]

Deciphering transcription factors and their corresponding regulatory elements during inhibitory interneuron differentiation using deep neural networks.

Journal: Frontiers in cell and developmental biology

Authors' code: orensteinLab/DLFMoD (no license)

Status: code verified, 7 files readable

[38269] doi:10.3389/fnimg.2023.1048652 [paper, repository]

DSC MRI in the human brain using deoxyhemoglobin and gadolinium-Simulations and validations at 3T.

Journal: Frontiers in neuroimaging

Authors' code: jschulman-1998/NeuroImage2022 (no license)

Status: code verified, 1 file readable, 1 match

[38270] doi:10.3390/pathogens12020353 [paper, data]

Discrimination of Classical and Atypical BSE by a Distinct Immunohistochemical PrP^Sc Profile.

Journal: Pathogens (Basel, Switzerland)

Status: data only, 3 datasets cited

[38271] doi:10.3390/s23042346 [paper, repository]

Selective Deeply Supervised Multi-Scale Attention Network for Brain Tumor Segmentation.

Journal: Sensors (Basel, Switzerland)

Authors' code: Azkarehman/SDS-MSA-Net (no license)

Status: code verified, 3 files readable, 1 match

[38272] doi:10.7554/elife.83044 [paper, repository]

Mechanisms and functions of respiration-driven gamma oscillations in the primary olfactory cortex.

Journal: eLife

Authors' code: joaqgonzar/Gamma_Oscillations_PCx (GPL-3.0)

Status: code verified, 13 files readable, 10 matches

[38273] doi:10.7554/elife.85537 [paper, repository]

Structural screens identify candidate human homologs of insect chemoreceptors and cryptic <i>Drosophila</i> gustatory receptor-like proteins.

Journal: eLife

Authors' code: supp:PMC9998090/elife-85537-data1.zip (no license)

Status: empty repository

Sunday, 19 February 2023 (3 papers)

[38274] doi:10.1016/j.isci.2023.106229 [paper, repository]

ILF3 prion-like domain regulates gene expression and fear memory under chronic stress.

Journal: iScience

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[38275] doi:10.1016/j.neuroimage.2023.119944 [paper, data]

Identification of overlapping and interacting networks reveals intrinsic spatiotemporal organization of the human brain.

Journal: NeuroImage

Status: data only, 1 dataset cited

[38276] doi:10.1186/s12984-023-01144-5 [paper, data]

Control strategies used in lower limb exoskeletons for gait rehabilitation after brain injury: a systematic review and analysis of clinical effectiveness.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 3 datasets cited

Saturday, 18 February 2023 (11 papers)

[38277] doi:10.1002/1878-0261.13389 [paper, data]

Glioblastoma and cerebral organoids: development and analysis of an in vitro model for glioblastoma migration.

Journal: Molecular oncology

Status: data only, 1 dataset cited

[38278] doi:10.1002/acm2.13919 [paper, repository]

Commissioning, clinical implementation, and initial experience with a new brain tumor treatment package on a low-field MR-linac.

Journal: Journal of applied clinical medical physics

Authors' code: supp:PMC10243323/ACM2-24-e13919-s001.m (no license)

Status: code verified, 1 file readable, 1 match

[38279] doi:10.1007/s12311-023-01526-4 [paper, repository]

Multi-focal Stimulation of the Cortico-cerebellar Loop During the Acquisition of a Novel Hand Motor Skill in Chronic Stroke Survivors.

Journal: Cerebellum (London, England)

Authors' code: rvlenth/emmeans (no license)

Status: code verified, 84 files readable

[38280] doi:10.1016/j.cris.2023.100053 [paper, data]

The specific expression patterns of sensory neuron membrane proteins are retained throughout the development of the desert locust <i>Schistocerca gregaria</i>.

Journal: Current research in insect science

Status: data only, 5 datasets cited

[38281] doi:10.1016/j.dcn.2023.101219 [paper, repository]

Shared pattern of impaired social communication and cognitive ability in the youth brain across diagnostic boundaries.

Journal: Developmental cognitive neuroscience

Authors' code: med.upenn.edu/bbl/philadelphianeurodevelopmentalcohort.html (no license), OSF cjerd (no license)

Status: code verified, 8 files readable, 6 matches

[38282] doi:10.1016/j.dib.2023.108987 [paper, repository]

Molecular and phylogenetic datasets for the Asterophryinae frogs of New Guinea with additional data on lifestyle, geography, and elevation.

Journal: Data in brief

Authors' code: Zenodo 7063167 (other-open), kingaa.github.io/ouch (no license)

Status: code verified, 4 files readable, 5 matches

[38283] doi:10.1016/j.heliyon.2023.e13853 [paper, data]

Integrative network pharmacology and in silico analyses identify the anti-omicron SARS-CoV-2 potential of eugenol.

Journal: Heliyon

Status: data only, 1 dataset cited

[38284] doi:10.1038/s41598-023-29994-y [paper, repository]

Neuroplasticity enables bio-cultural feedback in Paleolithic stone-tool making.

Journal: Scientific reports

Authors' code: OSF h5c8t (no license)

Status: code verified, 3 files readable

[38285] doi:10.1186/s13195-023-01188-8 [paper, data]

Comparison of ultrasensitive and mass spectrometry quantification of blood-based amyloid biomarkers for Alzheimer's disease diagnosis in a memory clinic cohort.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

[38286] doi:10.3390/brainsci13020354 [paper, data]

Intracerebral Electrophysiological Recordings to Understand the Neural Basis of Human Face Recognition.

Journal: Brain sciences

Status: data only, 1 dataset cited

[38287] doi:10.3390/ijms24044116 [paper]

Gene Expression Profile as a Predictor of Seizure Liability.

Journal: International journal of molecular sciences

Status: data only

Friday, 17 February 2023 (18 papers, 17 on this page)

[38288] doi:10.1016/j.bpj.2023.02.018 [paper, repository]

Branched actin cortices reconstituted in vesicles sense membrane curvature.

Journal: Biophysical journal

Authors' code: BioSoftMatterGroup/actin-curvature-sensing (GPL-3.0)

Status: code verified, 7 files readable, 7 matches

[38289] doi:10.1016/j.bpsgos.2023.02.005 [paper, repository]

Acculturative Orientations Among Hispanic/Latinx Caregivers in the ABCD Study: Associations With Caregiver and Youth Mental Health and Youth Brain Function.

Journal: Biological psychiatry global open science

Authors' code: NBCLab/abcd-hispanic-via (Apache-2.0), NBCLab/abcd_fmriprep-analysis (Apache-2.0)

Status: code verified, 35 files readable, 5 matches

[38290] doi:10.1016/j.celrep.2023.112119 [paper, repository]

Organization of hippocampal CA3 into correlated cell assemblies supports a stable spatial code.

Journal: Cell reports

Authors' code: Zenodo 7635972 (other-open), Zenodo 7523404 (other-open), zhoupc/CNMF_E (GPL-3.0), zivlab/CellReg (GPL-2.0), zivlab/cell_assemblies (no license)

Status: code verified, 330 files readable, 11 matches

[38291] doi:10.1016/j.celrep.2023.112189 [paper, data]

SARS-CoV-2 Spike protein induces TLR4-mediated long-term cognitive dysfunction recapitulating post-COVID-19 syndrome in mice.

Journal: Cell reports

Status: code on request, 4 datasets cited

[38292] doi:10.1038/s41380-023-01991-7 [paper, repository]

Variability and magnitude of brain glutamate levels in schizophrenia: a meta and mega-analysis.

Journal: Molecular psychiatry

Authors' code: katemerritt/variability (no license)

Status: code verified, 7 files readable

[38293] doi:10.1038/s41467-023-36087-x [paper, repository]

Rescue of neuropsychiatric phenotypes in a mouse model of 16p11.2 duplication syndrome by genetic correction of an epilepsy network hub.

Journal: Nature communications

Authors' code: marcdossantosPHD/PenzesLabimaging (no license)

Status: code verified, 1 file readable

[38294] doi:10.1038/s41598-023-29572-2 [paper, repository]

Modeling cholinergic retinal waves: starburst amacrine cells shape wave generation, propagation, and direction bias.

Journal: Scientific reports

Authors' code: mattar13/RetinalChaos (no license)

Status: code verified, 51 files readable, 8 matches

[38295] doi:10.1038/s42003-023-04542-6 [paper, data]

Bidirectional alterations in brain temperature profoundly modulate spatiotemporal neurovascular responses in-vivo.

Journal: Communications biology

Status: data only, 1 dataset cited

[38296] doi:10.1093/braincomms/fcad016 [paper, data]

A new class of peptides from wasp venom: a pathway to antiepileptic/neuroprotective drugs.

Journal: Brain communications

Status: data only, 1 dataset cited

[38297] doi:10.1093/braincomms/fcad035 [paper, repository]

Modular segregation drives causality of the dynamic oscillatory network responses during threat processing.

Journal: Brain communications

Authors' code: GGonEsc/TPDC (GPL-3.0)

Status: code verified, 5 files readable, 1 match

[38298] doi:10.1126/sciadv.add2870 [paper, repository]

Genetic architecture of the white matter connectome of the human brain.

Journal: Science advances

Authors' code: cnsgenomics.com/software/gcta (no license), mrtrix.org (no license), precimed/mostest (GPL-3.0), fuma.ctglab.nl (no license), getian107/PRScs (MIT), neurosynth.org (no license), hdl.handle.net/1839/8d718e44-a1b7-4d6d-994e-4b0c83f63ec4 (no license)

Status: code verified, 30 files readable, 3 matches

[38299] doi:10.1371/journal.pone.0279812 [paper, data]

The relationship between radiation dose and bevacizumab-related imaging abnormality in patients with brain tumors: A voxel-wise normal tissue complication probability (NTCP) analysis.

Journal: PloS one

Status: data only, 1 dataset cited

[38300] doi:10.1371/journal.pone.0281306 [paper, repository]

TorchDIVA: An extensible computational model of speech production built on an open-source machine learning library.

Journal: PloS one

Authors' code: skinahan/DIVA_PyTorch (no license)

Status: code verified, 44 files readable, 4 matches

[38301] doi:10.3389/fendo.2023.1124419 [paper, data]

Oxidative stress in cerebrovascular disease and associated diseases.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[38302] doi:10.3389/fnimg.2023.1070274 [paper, data]

Efficient evaluation of the Open QC task fMRI dataset.

Journal: Frontiers in neuroimaging

Status: data only, 2 datasets cited

[38303] doi:10.3389/fnins.2023.1116087 [paper, repository]

Integrative genetic and single cell RNA sequencing analysis provides new clues to the amyotrophic lateral sclerosis neurodegeneration.

Journal: Frontiers in neuroscience

Authors' code: LTLA/SingleR (GPL-3.0), NathanSkene/EWCE (no license), liuhankui/ALS (no license)

Status: code verified, 182 files readable, 5 matches

[38304] doi:10.3390/pharmaceutics15020687 [paper, data]

Glioblastoma Multiforme: Probing Solutions to Systemic Toxicity towards High-Dose Chemotherapy and Inflammatory Influence in Resistance against Temozolomide.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

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