Every paper, by date: page 172

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 172 of 200: 17 February 2023 to 7 February 2023.

Friday, 17 February 2023 (18 papers, 1 on this page)

[38305] doi:10.7554/elife.75825 [paper, data]

Iron status influences mitochondrial disease progression in Complex I-deficient mice.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 16 February 2023 (28 papers)

[38306] doi:10.1002/epi4.12704 [paper, repository]

EEG datasets for seizure detection and prediction- A review.

Journal: Epilepsia open

Authors' code: kaggle.com/competitions/seizure-detection (no license), kaggle.com/competitions/seizure-prediction (no license)

Status: dead link

[38307] doi:10.1016/j.crmeth.2023.100408 [paper, data]

Quantitative DNA-PAINT imaging of AMPA receptors in live neurons.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[38308] doi:10.1016/j.dcn.2023.101218 [paper, data]

Negative impact of daily screen use on inhibitory control network in preadolescence: A two-year follow-up study.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[38309] doi:10.1016/j.isci.2023.106219 [paper]

Marmoset monkeys use different avoidance strategies to cope with ambient noise during vocal behavior.

Journal: iScience

Status: code on request

[38310] doi:10.1016/j.stemcr.2023.01.010 [paper]

Understanding and modeling regional specification of the human ganglionic eminence.

Journal: Stem cell reports

Status: code on request

[38311] doi:10.1038/s41398-023-02344-2 [paper]

Functional connectivity signatures of NMDAR dysfunction in schizophrenia-integrating findings from imaging genetics and pharmaco-fMRI.

Journal: Translational psychiatry

Status: code on request

[38312] doi:10.1038/s41467-023-36587-w [paper]

Deconstructing the modular organization and real-time dynamics of mammalian spinal locomotor networks.

Journal: Nature communications

Status: code on request

[38313] doi:10.1038/s41598-022-27086-x [paper, data]

Inhibition of inflammatory microglia by dietary fiber and short-chain fatty acids.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38314] doi:10.1073/pnas.2210643120 [paper, data]

<i>Cspg4^high</i> microglia contribute to microgliosis during neurodegeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38315] doi:10.1073/pnas.2215747120 [paper, repository]

The energetics of rapid cellular mechanotransduction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: GrandlLab/sader_calibration (GPL-3.0), GrandlLab/InvOLS (MIT), GrandlLab/EphysAFM (MIT), GrandlLab/piezo_markov_simulation (MIT)

Status: code verified, 22 files readable, 9 matches

[38316] doi:10.1186/s10194-023-01550-z [paper, repository]

Causal relationships between migraine and microstructural white matter: a Mendelian randomization study.

Journal: The journal of headache and pain

Authors' code: bulik/ldsc (GPL-3.0), mrcieu.github.io/twosamplemr (no license)

Status: code verified, 27 files readable, 1 match

[38317] doi:10.1186/s40824-023-00353-2 [paper, data]

Magnetic transferrin nanoparticles (MTNs) assay as a novel isolation approach for exosomal biomarkers in neurological diseases.

Journal: Biomaterials research

Status: data only, 6 datasets cited

[38318] doi:10.1371/journal.pgen.1010522 [paper, data]

Functional impact of subunit composition and compensation on Drosophila melanogaster nicotinic receptors-targets of neonicotinoids.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[38319] doi:10.1371/journal.pone.0281877 [paper, repository]

Intrinsic velocity differences between larynx raising and larynx lowering.

Journal: PloS one

Authors' code: supp:PMC9934366/pone.0281877.s002.R (no license)

Status: code verified, 1 file readable, 2 matches

[38320] doi:10.3389/fcell.2023.1113675 [paper, data]

Deficiency in the cell-adhesion molecule <i>dscaml1</i> impairs hypothalamic CRH neuron development and perturbs normal neuroendocrine stress axis function.

Journal: Frontiers in cell and developmental biology

Status: data only, 4 datasets cited

[38321] doi:10.3389/fnagi.2023.1079433 [paper]

Exploration of novel biomarkers in Alzheimer's disease based on four diagnostic models.

Journal: Frontiers in aging neuroscience

Status: data only

[38322] doi:10.3389/fnagi.2023.1105690 [paper, data]

lncRNA-associated ceRNA network revealing the potential regulatory roles of ferroptosis and immune infiltration in Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[38323] doi:10.3389/fncel.2023.1093199 [paper, repository]

Bifurcation analysis of motoneuronal excitability mechanisms under normal and ALS conditions.

Journal: Frontiers in cellular neuroscience

Authors' code: MuhammadMoustafa/Bifurcation-analysis-of-spinal-motoneuron-firing-behaviour (GPL-3.0)

Status: empty repository, 2 files readable

[38324] doi:10.3389/fnins.2022.818800 [paper, repository]

Interconnected sub-networks of the macaque monkey gustatory connectome.

Journal: Frontiers in neuroscience

Authors' code: gitlab.mpcdf.mpg.de/alik/brain_network (MIT)

Status: code verified, 175 files readable, 7 matches

[38325] doi:10.3389/fnins.2023.1120086 [paper, data]

Golgi fragmentation - One of the earliest organelle phenotypes in Alzheimer's disease neurons.

Journal: Frontiers in neuroscience

Status: data only, 8 datasets cited

[38326] doi:10.3389/fnmol.2023.1104585 [paper, data]

Co-occurring pathogenic variants in 6q27 associated with dementia spectrum disorders in a Peruvian family.

Journal: Frontiers in molecular neuroscience

Status: data only, 2 datasets cited

[38327] doi:10.3389/fphar.2023.1103012 [paper, data]

Ginsenoside ompound K reduces neuronal damage and improves neuronal synaptic dysfunction by targeting Aβ.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[38328] doi:10.3389/fpsyt.2023.1070556 [paper, data]

A human stem cell-derived neuronal model of morphine exposure reflects brain dysregulation in opioid use disorder: Transcriptomic and epigenetic characterization of postmortem-derived iPSC neurons.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[38329] doi:10.3389/fpsyt.2023.1084443 [paper, data]

Aberrant degree centrality of functional brain networks in subclinical depression and major depressive disorder.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[38330] doi:10.3390/biomedicines11020583 [paper, data]

Neuroinflammation, Energy and Sphingolipid Metabolism Biomarkers Are Revealed by Metabolic Modeling of Autistic Brains.

Journal: Biomedicines

Status: data only, 1 dataset cited

[38331] doi:10.3390/cancers15041253 [paper]

Modeling Human Brain Tumors and the Microenvironment Using Induced Pluripotent Stem Cells.

Journal: Cancers

Status: data only

[38332] doi:10.7554/elife.80918 [paper, repository]

MorphoFeatures for unsupervised exploration of cell types, tissues, and organs in volume electron microscopy.

Journal: eLife

Authors' code: mobie/platybrowser-project (no license)

Status: code verified, 267 files readable, 5 matches

[38333] doi:10.7554/elife.81463 [paper, data]

SUMOylation of Na_V1.2 channels regulates the velocity of backpropagating action potentials in cortical pyramidal neurons.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 15 February 2023 (27 papers)

[38334] doi:10.1002/mdc3.13667 [paper, repository]

Deep Brain Stimulation: When to Test Directional?

Journal: Movement disorders clinical practice

Authors' code: kilyth/MappingDirect_Publication (GPL-3.0)

Status: code verified, 7 files readable, 2 matches

[38335] doi:10.1016/j.celrep.2023.112089 [paper]

Striatal μ-opioid receptor activation triggers direct-pathway GABAergic plasticity and induces negative affect.

Journal: Cell reports

Status: code on request

[38336] doi:10.1016/j.celrep.2023.112115 [paper]

Cone photoreceptors transfer damaged mitochondria to Müller glia.

Journal: Cell reports

Status: code on request

[38337] doi:10.1016/j.crmeth.2023.100409 [paper, repository]

BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids.

Journal: Cell reports methods

Authors' code: daifengwanglab/BOMA (MIT), Zenodo 7556083 (other-open)

Status: code verified, 8 files readable

[38338] doi:10.1016/j.isci.2023.106200 [paper, data]

The cerebellum promotes sequential foraging strategies and contributes to the directional modulation of hippocampal place cells.

Journal: iScience

Status: code on request, 1 dataset cited

[38339] doi:10.1016/j.isci.2023.106208 [paper]

Transmembrane capability of DNA origami sheet enhanced by 3D configurational changes.

Journal: iScience

Status: code on request

[38340] doi:10.1016/j.ynirp.2023.100158 [paper, repository]

An examination of the reliability of seed-to-seed resting state functional connectivity in tinnitus patients.

Journal: Neuroimage. Reports

Authors' code: mathworks.com/matlabcentral/fileexchange (no license)

Status: code verified

[38341] doi:10.1038/s41398-023-02352-2 [paper]

Alcohol-specific transcriptional dynamics of memory reconsolidation and relapse.

Journal: Translational psychiatry

Status: data only

[38342] doi:10.1038/s41419-022-05520-2 [paper, data]

Augmenting hematoma-scavenging capacity of innate immune cells by CDNF reduces brain injury and promotes functional recovery after intracerebral hemorrhage.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[38343] doi:10.1038/s41586-023-05711-7 [paper, repository]

A NPAS4-NuA4 complex couples synaptic activity to DNA repair.

Journal: Nature

Authors' code: oicr-gsi/debarcer (MIT), BiCroLab/blissNP (MIT)

Status: code verified, 30 files readable

[38344] doi:10.1038/s41598-023-29574-0 [paper, repository]

DeepAction: a MATLAB toolbox for automated classification of animal behavior in video.

Journal: Scientific reports

Authors' code: carlwharris/DeepAction (MIT)

Status: code verified, 170 files readable, 13 matches

[38345] doi:10.1038/s42003-023-04511-z [paper, repository]

Uncovering hidden network architecture from spiking activities using an exact statistical input-output relation of neurons.

Journal: Communications biology

Authors' code: Zenodo 7546537 (CC-BY-4.0)

Status: code verified

[38346] doi:10.1038/s42003-023-04546-2 [paper, repository]

Selectivity for food in human ventral visual cortex.

Journal: Communications biology

Authors' code: brainML/food4thought (MIT)

Status: code verified, 14 files readable, 3 matches

[38347] doi:10.1080/19768354.2023.2175497 [paper, data]

Long non-coding RNA in glioma: novel genetic players in temozolomide resistance.

Journal: Animal cells and systems

Status: data only, 1 dataset cited

[38348] doi:10.1098/rsos.230040 [paper, repository]

Effects of different acute stressors on the regulation of appetite genes in the carp (<i>Cyprinus carpio</i> L.) brain.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6414012 (no license)

Status: code found, still to be checked

[38349] doi:10.1101/gr.276655.122 [paper, repository]

Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing.

Journal: Genome research

Authors' code: genome.cshlp.org/lookup/suppl (no license), adeylab/nanowell_sciATAC (no license)

Status: code verified, 6 files readable, 3 matches

[38350] doi:10.1126/sciadv.ade2441 [paper, data]

FOXG1 drives transcriptomic networks to specify principal neuron subtypes during the development of the medial pallium.

Journal: Science advances

Status: data only, 1 dataset cited

[38351] doi:10.1126/sciadv.ade5732 [paper, repository]

Neuronal dynamics of the default mode network and anterior insular cortex: Intrinsic properties and modulation by salient stimuli.

Journal: Science advances

Authors' code: scsnl/bwl_GCaMP_rest_oddball_2022 (no license)

Status: code verified, 28 files readable, 8 matches

[38352] doi:10.1186/s12915-023-01534-0 [paper, data]

Polycomb group genes are required for neuronal pruning in Drosophila.

Journal: BMC biology

Status: data only, 1 dataset cited

[38353] doi:10.1371/journal.pcbi.1010869 [paper, repository]

Functional duality in group criticality via ambiguous interactions.

Journal: PLoS computational biology

Authors' code: robince/partial-info-decomp (GPL-3.0), supp:PMC9931117/pcbi.1010869.s009.rar (no license)

Status: code verified, 53 files readable

[38354] doi:10.1523/eneuro.0296-21.2022 [paper, repository]

Development of the Functional Connectome Topology in Adolescence: Evidence from Topological Data Analysis.

Journal: eNeuro

Authors' code: BrainMapINB/Pubertal_TDA (GPL-3.0)

Status: code verified, 5 files readable, 2 matches

[38355] doi:10.3389/fnins.2023.1092537 [paper, data]

Healthy lifestyles and wellbeing reduce neuroinflammation and prevent neurodegenerative and psychiatric disorders.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[38356] doi:10.3389/fpsyg.2023.1093014 [paper, data]

The reality of virtual reality.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[38357] doi:10.3389/fpsyt.2023.1068397 [paper, data]

Normative model detects abnormal functional connectivity in psychiatric disorders.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[38358] doi:10.3390/a16020116 [paper, repository]

PigSNIPE: Scalable Neuroimaging Processing Engine for Minipig MRI.

Journal: Algorithms

Authors' code: BRAINSia/PigSNIPE (Apache-2.0)

Status: code verified, 13 files readable, 5 matches

[38359] doi:10.7554/elife.74394 [paper, data]

Mice and primates use distinct strategies for visual segmentation.

Journal: eLife

Status: data only, 1 dataset cited

[38360] doi:10.7554/elife.81983 [paper, repository]

Circuit mechanisms underlying embryonic retinal waves.

Journal: eLife

Authors' code: Llamero/DIY_Epifluorescence_Macroscope (CC-BY-SA-4.0), FellerLabCodeShare/Embryonic-Retinal-Waves (no license)

Status: code verified, 10 files readable

Tuesday, 14 February 2023 (25 papers)

[38361] doi:10.1002/brb3.2907 [paper]

Event-related potential patterns of selective attention modulated by perceptual load.

Journal: Brain and behavior

Status: code on request

[38362] doi:10.1007/s00221-023-06569-x [paper, data]

Spatial and temporal (non)binding of audiovisual rhythms in sensorimotor synchronisation.

Journal: Experimental brain research

Status: data only, 1 dataset cited

[38363] doi:10.1016/j.celrep.2023.112112 [paper]

On the origin and evolution of RNA editing in metazoans.

Journal: Cell reports

Status: code on request

[38364] doi:10.1016/j.celrep.2023.112117 [paper]

Actin-dependent astrocytic infiltration is a key step for axon defasciculation during remodeling.

Journal: Cell reports

Status: code on request

[38365] doi:10.1016/j.isci.2023.106202 [paper]

The atypical CDK activator RingoA/Spy1 regulates exit from quiescence in neural stem cells.

Journal: iScience

Status: code on request

[38366] doi:10.1016/j.neuroscience.2023.02.002 [paper, repository]

Peer Social Environment Impacts Behavior and Dopamine D1 Receptor Density in Prairie Voles (Microtus ochrogaster).

Journal: Neuroscience

Authors' code: BeeryLab/intervole_timer (MIT)

Status: code verified, 4 files readable

[38367] doi:10.1016/j.xpro.2023.102118 [paper, repository]

Precision mapping and transcranial magnetic stimulation of individual-specific functional brain networks in humans.

Journal: STAR protocols

Authors' code: cjl2007/Liston-Laboratory-MultiEchofMRI-Pipeline (no license), cjl2007/Targeted-Functional-Network-Stimulation (no license), MidnightScanClub/MSCcodebase (no license), Zenodo 7566548 (other-open), Zenodo 6958611 (other-open)

Status: code verified, 651 files readable, 33 matches

[38368] doi:10.1016/j.xpro.2023.102121 [paper]

Microfluidics and fluorescence microscopy protocol to study the response of C. elegans to chemosensory stimuli.

Journal: STAR protocols

Status: code on request

[38369] doi:10.1016/j.ymthe.2023.02.008 [paper, data]

Roles of lncRNAs in brain development and pathogenesis: Emerging therapeutic opportunities.

Journal: Molecular therapy : the journal of the American Society of Gene Therapy

Status: data only, 4 datasets cited

[38370] doi:10.1021/acs.jmedchem.2c01572 [paper, data]

A Medicinal Chemistry Perspective on Excitatory Amino Acid Transporter 2 Dysfunction in Neurodegenerative Diseases.

Journal: Journal of medicinal chemistry

Status: data only, 2 datasets cited

[38371] doi:10.1038/s41380-023-01959-7 [paper, repository]

MYT1L haploinsufficiency in human neurons and mice causes autism-associated phenotypes that can be reversed by genetic and pharmacologic intervention.

Journal: Molecular psychiatry

Authors' code: Zenodo 5653535 (MIT), nf-core/cutandrun (MIT)

Status: code verified, 20 files readable

[38372] doi:10.1038/s41597-023-01942-5 [paper, repository]

A longitudinal microstructural MRI dataset in healthy C57Bl/6 mice at 9.4 Tesla.

Journal: Scientific data

Authors' code: OSF 5eusw (no license), cfmm/pipelines/mouse_dmri_MT_dicomTOscalarMaps (no license)

Status: code verified, 27 files readable, 12 matches

[38373] doi:10.1038/s41598-023-29186-8 [paper, repository]

Symplectic encoders for physics-constrained variational dynamics inference.

Journal: Scientific reports

Authors' code: kbacsa-ethz/phys-stoch (no license)

Status: code verified, 10 files readable, 3 matches

[38374] doi:10.1073/pnas.2212735120 [paper, data]

Encoding of dynamic facial information in the middle dorsal face area.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38375] doi:10.1073/pnas.2219049120 [paper, repository]

Neuronal morphology enhances robustness to perturbations of channel densities.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: modeldb:267621 (no license)

Status: code found, still to be checked

[38376] doi:10.1093/pnasnexus/pgac315 [paper, repository]

Sensing echoes: temporal misalignment in auditory brainstem responses as the earliest marker of neurodevelopmental derailment.

Journal: PNAS nexus

Authors' code: Zenodo 6299560 (CC-BY-4.0)

Status: code verified, 1 file readable

[38377] doi:10.1111/cpr.13422 [paper, data]

Low glutaminase and glycolysis correlate with a high transdifferentiation efficiency in mouse cortex.

Journal: Cell proliferation

Status: data only, 1 dataset cited

[38378] doi:10.1186/s11689-022-09469-3 [paper, repository]

Cortical and subcortical morphological alteration in Angelman syndrome.

Journal: Journal of neurodevelopmental disorders

Authors' code: HusBunia/RPlot (no license)

Status: code verified, 2 files readable

[38379] doi:10.1186/s12916-023-02743-8 [paper, repository]

Maternal pre-pregnancy body mass index is associated with newborn offspring hypothalamic mean diffusivity: a prospective dual-cohort study.

Journal: BMC medicine

Authors' code: nda.nih.gov/edit_collection.html (no license)

Status: code verified

[38380] doi:10.1371/journal.pone.0281609 [paper, repository]

Multivariate analysis of variegated expression in Neurons: A strategy for unbiased localization of gene function to candidate brain regions in larval zebrafish.

Journal: PloS one

Authors' code: supp:PMC9928119/pone.0281609.s003.zip (no license)

Status: code verified, 9 files readable, 5 matches

[38381] doi:10.1515/med-2023-0639 [paper, data]

Glycoprotein non-metastatic melanoma B interacts with epidermal growth factor receptor to regulate neural stem cell survival and differentiation.

Journal: Open medicine (Warsaw, Poland)

Status: data only, 1 dataset cited

[38382] doi:10.3389/fnhum.2023.1076873 [paper, data]

Structural differences among children, adolescents, and adults with attention-deficit/hyperactivity disorder and abnormal Granger causality of the right pallidum and whole-brain.

Journal: Frontiers in human neuroscience

Status: data only, 2 datasets cited

[38383] doi:10.3389/fpsyt.2023.1075250 [paper, data]

DNA methylation in cocaine use disorder-An epigenome-wide approach in the human prefrontal cortex.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[38384] doi:10.3390/genes14020482 [paper, repository]

Independent Associated SNPs at SORCS3 and Its Protein Interactors for Multiple Brain-Related Disorders and Traits.

Journal: Genes

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable

[38385] doi:10.7554/elife.80281 [paper, repository]

Representational integration and differentiation in the human hippocampus following goal-directed navigation.

Journal: eLife

Authors' code: codeocean:9570390 (no license), coreyfernandez/RID (no license)

Status: code verified, 9 files readable, 2 matches

Monday, 13 February 2023 (32 papers)

[38386] doi:10.1002/mdc3.13684 [paper, repository]

Phantom Boarder Relates to Experimentally-Induced Presence Hallucinations in Parkinson's Disease.

Journal: Movement disorders clinical practice

Authors' code: gitlab.epfl.ch/fbernasc/phantom_boarder_pd (no license)

Status: code verified, 4 files readable

[38387] doi:10.1007/s12311-022-01506-0 [paper, repository]

Cerebellum Lecture: the Cerebellar Nuclei-Core of the Cerebellum.

Journal: Cerebellum (London, England)

Authors' code: justuskebschull/CNcode_final (no license)

Status: code verified, 110 files readable, 3 matches

[38388] doi:10.1016/j.celrep.2023.112118 [paper, repository]

Regional and cell-type-specific afferent and efferent projections of the mouse claustrum.

Journal: Cell reports

Authors' code: AllenInstitute/stpt_registration (BSD-2-Clause)

Status: code verified, 41 files readable, 1 match

[38389] doi:10.1016/j.isci.2023.106182 [paper, repository]

Efficient inference of synaptic plasticity rule with Gaussian process regression.

Journal: iScience

Authors' code: chinsengi/GPR (no license)

Status: code verified, 87 files readable, 2 matches

[38390] doi:10.1016/j.isci.2023.106186 [paper, repository]

Sleep/wake changes in perturbational complexity in rats and mice.

Journal: iScience

Authors' code: cortex-lab/KiloSort (GPL-2.0), renzocom/PCIst (GPL-3.0), cavelligonca/Cavelli-Mao-2022 (no license), billkarsh/SpikeGLX (BSD-3-Clause)

Status: code verified, 440 files readable, 10 matches

[38391] doi:10.1016/j.isci.2023.106193 [paper]

Histone malonylation is regulated by SIRT5 and KAT2A.

Journal: iScience

Status: code on request

[38392] doi:10.1016/j.neuron.2023.01.017 [paper, repository]

Brief synaptic inhibition persistently interrupts firing of fast-spiking interneurons.

Journal: Neuron

Authors' code: valegarman/HippoCookBook (no license), Zenodo 6902376 (other-open), petersenpeter/KilosortWrapper (no license), cortex-lab/phy (BSD-3-Clause), brendonw1/KilosortWrapper (no license)

Status: code verified, 2,192 files readable, 4 matches

[38393] doi:10.1021/acschemneuro.2c00779 [paper, data]

Novel GluN2B-Selective NMDA Receptor Negative Allosteric Modulator Possesses Intrinsic Analgesic Properties and Enhances Analgesia of Morphine in a Rodent Tail Flick Pain Model.

Journal: ACS chemical neuroscience

Status: data only, 4 datasets cited

[38394] doi:10.1038/s41398-023-02345-1 [paper, repository]

Methylation and expression of glucocorticoid receptor exon-1 variants and FKBP5 in teenage suicide-completers.

Journal: Translational psychiatry

Authors' code: rbhaumik/Mythylation-and-expressions-in-suicide (no license)

Status: code verified, 1 file readable

[38395] doi:10.1038/s41467-023-36519-8 [paper, repository]

Single-cell RNA-sequencing identifies disease-associated oligodendrocytes in male APP NL-G-F and 5XFAD mice.

Journal: Nature communications

Authors' code: Jobang9286/APPKI_oligo_scRNAseq (no license)

Status: code verified, 5 files readable, 3 matches

[38396] doi:10.1038/s41598-023-29101-1 [paper, data]

Identification of novel targets and pathways to distinguish suicide dependent or independent on depression diagnosis.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[38397] doi:10.1038/s43588-022-00395-x [paper, data]

Evolving scattering networks for engineering disorder.

Journal: Nature computational science

Status: data only, 1 dataset cited

[38398] doi:10.1073/pnas.2205247120 [paper, data]

An HLA-G/SPAG9/STAT3 axis promotes brain metastases.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38399] doi:10.1186/s13041-023-01010-4 [paper, data]

Disruption of protein geranylgeranylation in the cerebellum causes cerebellar hypoplasia and ataxia via blocking granule cell progenitor proliferation.

Journal: Molecular brain

Status: data only, 1 dataset cited

[38400] doi:10.1186/s40001-022-00980-w [paper]

Identifying effective diagnostic biomarkers for childhood cerebral malaria in Africa integrating coexpression analysis with machine learning algorithm.

Journal: European journal of medical research

Status: data only

[38401] doi:10.1186/s41232-023-00263-9 [paper, data]

IFN-γ-STAT1-mediated CD8⁺ T-cell-neural stem cell cross talk controls astrogliogenesis after spinal cord injury.

Journal: Inflammation and regeneration

Status: data only, 1 dataset cited

[38402] doi:10.1371/journal.pbio.3001999 [paper, repository]

Alpha oscillatory activity is causally linked to working memory retention.

Journal: PLoS biology

Authors' code: OSF bfm46 (no license)

Status: code verified, 27 files readable, 2 matches

[38403] doi:10.1371/journal.pcbi.1009894 [paper, repository]

AI reveals insights into link between CD33 and cognitive impairment in Alzheimer's Disease.

Journal: PLoS computational biology

Authors' code: traschka/iVAMBN (no license)

Status: code verified, 51 files readable, 3 matches

[38404] doi:10.1371/journal.pcbi.1010825 [paper, repository]

Modeling the three-dimensional connectivity of in vitro cortical ensembles coupled to Micro-Electrode Arrays.

Journal: PLoS computational biology

Authors' code: Zenodo 7331295 (other-open), screenneuropharm/3dneuronalmodel (MIT)

Status: code verified, 64 files readable, 1 match

[38405] doi:10.1371/journal.pcbi.1010876 [paper, repository]

Synaptic self-organization of spatio-temporal pattern selectivity.

Journal: PLoS computational biology

Authors' code: MohammadDehghaniH/Synaptic-Self-Organization-of-Spatio-Temporal-Pattern-Selectivity (MIT)

Status: code verified, 47 files readable, 5 matches

[38406] doi:10.1371/journal.pone.0263639 [paper, repository]

Ventricular anatomical complexity and sex differences impact predictions from electrophysiological computational models.

Journal: PloS one

Authors' code: rdoste/OT_RBM (GPL-3.0)

Status: code verified, 13 files readable, 2 matches

[38407] doi:10.3389/fncel.2023.1143956 [paper, data]

The role of <i>ATP1A3</i> gene in epilepsy: We need to know more.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[38408] doi:10.3389/fnmol.2023.1130123 [paper, repository]

Paclitaxel effects on axonal localization and vesicular trafficking of Na&lt;sub&gt;V&lt;/sub&gt;1.8.

Journal: Frontiers in molecular neuroscience

Authors' code: ycnrr (no license)

Status: code verified

[38409] doi:10.3389/fonc.2023.1075638 [paper, data]

Identification of <i>TSGA10</i> and <i>GGNBP2</i> splicing variants in 5' untranslated region with distinct expression profiles in brain tumor samples.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[38410] doi:10.3389/fpsyt.2023.1114703 [paper, data]

Functional connectivity and gray matter deficits within the auditory attention circuit in first-episode psychosis.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[38411] doi:10.3390/brainsci13020315 [paper, data]

Machine Learning Enabled P300 Classifier for Autism Spectrum Disorder Using Adaptive Signal Decomposition.

Journal: Brain sciences

Status: data only, 1 dataset cited

[38412] doi:10.3390/brainsci13020319 [paper, repository]

Constrain Bias Addition to Train Low-Latency Spiking Neural Networks.

Journal: Brain sciences

Authors' code: zalandoresearch/fashion-mnist (MIT), fangwei123456/spikingjelly (Apache-2.0)

Status: code verified, 527 files readable, 3 matches

[38413] doi:10.3390/ijms24043716 [paper, data]

Impact of the Voltage-Gated Calcium Channel Antagonist Nimodipine on the Development of Oligodendrocyte Precursor Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38414] doi:10.3390/ijms24043719 [paper, data]

Dependence on MUC1-C in Progression of Neuroendocrine Prostate Cancer.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[38415] doi:10.3390/ijms24043736 [paper, data]

Transthyretin Is Commonly Upregulated in the Hippocampus of Two Stress-Induced Depression Mouse Models.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38416] doi:10.7554/elife.75631 [paper, data]

NPAS4 in the medial prefrontal cortex mediates chronic social defeat stress-induced anhedonia-like behavior and reductions in excitatory synapses.

Journal: eLife

Status: data only, 1 dataset cited

[38417] doi:10.7554/elife.79928 [paper, repository]

Single spikes drive sequential propagation and routing of activity in a cortical network.

Journal: eLife

Authors' code: comp-neural-circuits/tctx (MIT)

Status: code verified, 34 files readable, 6 matches

Sunday, 12 February 2023 (2 papers)

[38418] doi:10.1111/psyg.12944 [paper, data]

Aducanumab for the treatment of Alzheimer's disease: a systematic review.

Journal: Psychogeriatrics : the official journal of the Japanese Psychogeriatric Society

Status: data only, 1 dataset cited

[38419] doi:10.3390/pathogens12020305 [paper, data]

Successful Removal of <i>Angiostrongylus cantonensis</i> Larvae from the Central Nervous System of Rats 7- and 14-Days Post-Infection Using a Product Containing Moxidectin, Sarolaner and Pyrantel Embonate (Simparica Trio™) in Experimental Infections.

Journal: Pathogens (Basel, Switzerland)

Status: data only, 12 datasets cited

Saturday, 11 February 2023 (4 papers)

[38420] doi:10.1002/hbm.26228 [paper]

Proof-of-concept of a novel structural equation modelling approach for the analysis of functional magnetic resonance imaging data applied to investigate individual differences in human pain responses.

Journal: Human brain mapping

Status: code on request

[38421] doi:10.1007/s00259-023-06124-4 [paper, data]

Secretin modulates appetite via brown adipose tissue-brain axis.

Journal: European journal of nuclear medicine and molecular imaging

Status: data only, 1 dataset cited

[38422] doi:10.1038/s41398-023-02349-x [paper, repository]

Genomic patterns linked to gray matter alterations underlying working memory deficits in adults and adolescents with attention-deficit/hyperactivity disorder.

Journal: Translational psychiatry

Authors' code: trendscenter.org/software/fit (no license)

Status: code verified

[38423] doi:10.1038/s41467-023-36321-6 [paper, repository]

T cell-independent eradication of experimental glioma by intravenous TLR7/8-agonist-loaded nanoparticles.

Journal: Nature communications

Authors' code: NeuroAI-HD/HD-GLIOMOUSE (Apache-2.0)

Status: code verified, 9 files readable

Friday, 10 February 2023 (31 papers)

[38424] doi:10.1002/hbm.26227 [paper, repository]

Combining arterial blood contrast with BOLD increases fMRI intracortical contrast.

Journal: Human brain mapping

Authors' code: npriov/saturation_preparation_sim (no license)

Status: code verified, 6 files readable, 2 matches

[38425] doi:10.1016/j.dib.2023.108972 [paper, data]

Functional magnetic resonance imaging data for the neural dynamics underlying the acquisition of distinct auditory categories.

Journal: Data in brief

Status: data only, 3 datasets cited

[38426] doi:10.1016/j.patter.2023.100689 [paper, repository]

Deep learning-based risk prediction for interventional clinical trials based on protocol design: A retrospective study.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 7509571 (other-open), ds4dh/deep_ct_risk (MIT)

Status: code verified, 34 files readable, 9 matches

[38427] doi:10.1038/s41467-023-36400-8 [paper, repository]

Loss of phosphatase CTDNEP1 potentiates aggressive medulloblastoma by triggering MYC amplification and genomic instability.

Journal: Nature communications

Authors' code: ding-lab/gatk4wxscnv (GPL-3.0)

Status: code verified, 8 files readable, 2 matches

[38428] doi:10.1038/s41467-023-36430-2 [paper, data]

FGL2-targeting T cells exhibit antitumor effects on glioblastoma and recruit tumor-specific brain-resident memory T cells.

Journal: Nature communications

Status: data only, 1 dataset cited

[38429] doi:10.1038/s41597-022-01898-y [paper, repository]

Open multi-session and multi-task EEG cognitive Dataset for passive brain-computer Interface Applications.

Journal: Scientific data

Authors' code: marcels-2-neurons/subjective_questions (no license)

Status: empty repository, 1 file readable

[38430] doi:10.1038/s41598-023-29609-6 [paper, repository]

Patterns of Arc mRNA expression in the rat brain following dual recall of fear- and reward-based socially acquired information.

Journal: Scientific reports

Authors' code: dataverse.tdl.org/dataverse/monfilsfearmemorylab (no license)

Status: code found, still to be checked

[38431] doi:10.1038/s42003-023-04543-5 [paper, data]

Self-organization, quality control, and preclinical studies of human iPSC-derived retinal sheets for tissue-transplantation therapy.

Journal: Communications biology

Status: data only, 1 dataset cited

[38432] doi:10.1038/s42003-023-04545-3 [paper, data]

Time-varying SUVr reflects the dynamics of dopamine increases during methylphenidate challenges in humans.

Journal: Communications biology

Status: code on request, 1 dataset cited

[38433] doi:10.1073/pnas.2215906120 [paper, data]

Self-renewing macrophages in dorsal root ganglia contribute to promote nerve regeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38434] doi:10.1073/pnas.2216415120 [paper, repository]

Neural parameter calibration for large-scale multiagent models.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ThGaskin/NeuralABM (no license)

Status: code verified, 95 files readable, 11 matches

[38435] doi:10.1093/pnasnexus/pgad044 [paper, repository]

Computational models of dopamine release measured by fast scan cyclic voltammetry in vivo.

Journal: PNAS nexus

Authors' code: DSulzerLab/DARELA (MIT)

Status: code verified, 12 files readable, 5 matches

[38436] doi:10.1113/ep090981 [paper, repository]

Perceptions of fatigue and neuromuscular measures of performance fatigability during prolonged low-intensity elbow flexions.

Journal: Experimental physiology

Authors' code: SciBorgo/subjective-scales-neuro (no license)

Status: code verified, 19 files readable, 2 matches

[38437] doi:10.1117/1.nph.10.2.023516 [paper]

Brain space image reconstruction of functional near-infrared spectroscopy using a Bayesian adaptive fused sparse overlapping group lasso model.

Journal: Neurophotonics

Status: code on request

[38438] doi:10.1126/sciadv.add8946 [paper, data]

Convergent abnormalities in striatal gene networks in human cocaine use disorder and mouse cocaine administration models.

Journal: Science advances

Status: data only, 1 dataset cited

[38439] doi:10.1371/journal.pcbi.1010915 [paper, repository]

Global dynamics of neural mass models.

Journal: PLoS computational biology

Authors' code: gercoo/exittimes2synapticconnectivity (no license)

Status: code verified, 11 files readable

[38440] doi:10.1371/journal.pone.0268577 [paper, data]

An adversarial collaboration protocol for testing contrasting predictions of global neuronal workspace and integrated information theory.

Journal: PloS one

Status: data only, 1 dataset cited

[38441] doi:10.21470/1678-9741-2021-0548 [paper, data]

The Neuroprotective Effects of Ginsenoside Rd Pretreatment in a Rat Model of Spinal Cord Ischemia-Reperfusion Injury.

Journal: Brazilian journal of cardiovascular surgery

Status: data only, 1 dataset cited

[38442] doi:10.2196/40211 [paper]

Automated Sleep Stages Classification Using Convolutional Neural Network From Raw and Time-Frequency Electroencephalogram Signals: Systematic Evaluation Study.

Journal: Journal of medical Internet research

Status: code on request

[38443] doi:10.3389/fcell.2023.1142586 [paper, repository]

Clcf1/Crlf1a-mediated signaling is neuroprotective and required for Müller glia proliferation in the light-damaged zebrafish retina.

Journal: Frontiers in cell and developmental biology

Authors' code: jiewwwang/Single-cell-retinalregeneration (no license)

Status: dead link

[38444] doi:10.3389/fendo.2023.1090081 [paper, data]

Thyroid hormone action controls multiple components of cell junctions at the ventricular zone in the newborn rat brain.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[38445] doi:10.3389/fendo.2023.1093592 [paper, data]

The molecular phenotype of kisspeptin neurons in the medial amygdala of female mice.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[38446] doi:10.3389/fninf.2023.941696 [paper, repository]

Efficient parameter calibration and real-time simulation of large-scale spiking neural networks with GeNN and NEST.

Journal: Frontiers in neuroinformatics

Authors' code: genn-team/genn (LGPL-2.1), nawrotlab/SNN_GeNN_Nest (no license)

Status: code verified, 285 files readable, 7 matches

[38447] doi:10.3389/fnins.2023.1068334 [paper, data]

Behavioral and transcriptomic effects of the cancer treatment tamoxifen in mice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[38448] doi:10.3389/fnins.2023.971980 [paper, repository]

A robust role for motor cortex.

Journal: Frontiers in neuroscience

Authors' code: kampff-lab/shuttling-analysis (no license)

Status: code verified, 147 files readable

[38449] doi:10.3390/brainsci13020296 [paper, repository]

Challenging the Classical View: Recognition of Identity and Expression as Integrated Processes.

Journal: Brain sciences

Authors' code: els615/3DenseNets (no license)

Status: code verified, 19 files readable, 3 matches

[38450] doi:10.3390/brainsci13020303 [paper, repository]

Case-Based and Quantum Classification for ERP-Based Brain-Computer Interfaces.

Journal: Brain sciences

Authors' code: aquemy/HCBR (MIT)

Status: code verified, 105 files readable, 1 match

[38451] doi:10.3390/diagnostics13040668 [paper, data]

Feature Extraction Using a Residual Deep Convolutional Neural Network (ResNet-152) and Optimized Feature Dimension Reduction for MRI Brain Tumor Classification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[38452] doi:10.3390/ijms24043562 [paper, data]

Recognition of Differentially Expressed Molecular Signatures and Pathways Associated with COVID-19 Poor Prognosis in Glioblastoma Patients.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38453] doi:10.7554/elife.71315 [paper, data]

Neural activity tracking identity and confidence in social information.

Journal: eLife

Status: data only, 1 dataset cited

[38454] doi:10.7554/elife.83133 [paper, data]

A neuroepithelial wave of BMP signalling drives anteroposterior specification of the tuberal hypothalamus.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 9 February 2023 (24 papers)

[38455] doi:10.1016/j.celrep.2023.112087 [paper, repository]

The cellular basis of mechanosensation in mammalian tongue.

Journal: Cell reports

Authors' code: fitzlab/CellMagicWand (MIT), Zenodo 6829200 (other-open), LumpkinLab/invivo_TG_pipeline (MIT), Zenodo 7135556 (other-open)

Status: code verified, 52 files readable, 8 matches

[38456] doi:10.1016/j.ebiom.2023.104460 [paper]

Lateralization of temporal lobe epileptic foci with automated chemical exchange saturation transfer measurements at 3 Tesla.

Journal: EBioMedicine

Status: code on request

[38457] doi:10.1016/j.jbc.2023.102996 [paper, data]

Transcription factor SOX15 regulates stem cell pluripotency and promotes neural fate during differentiation by activating the neurogenic gene Hes5.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[38458] doi:10.1016/j.neuroimage.2023.119935 [paper, data]

A stimulus-driven approach reveals vertical luminance gradient as a stimulus feature that drives human cortical scene selectivity.

Journal: NeuroImage

Status: data only, 1 dataset cited

[38459] doi:10.1016/j.stemcr.2023.01.004 [paper]

BMP4-SMAD1/5/9-RUNX2 pathway activation inhibits neurogenesis and oligodendrogenesis in Alzheimer's patients' iPSCs in senescence-related conditions.

Journal: Stem cell reports

Status: code on request

[38460] doi:10.1038/s41589-023-01265-x [paper]

An optimized bioluminescent substrate for non-invasive imaging in the brain.

Journal: Nature chemical biology

Status: code on request

[38461] doi:10.1038/s41593-022-01252-w [paper, repository]

Integrated cardio-behavioral responses to threat define defensive states.

Journal: Nature neuroscience

Authors' code: DefenseCircuitsLab (no license)

Status: code verified

[38462] doi:10.1038/s41598-023-27528-0 [paper, data]

EEG is better left alone.

Journal: Scientific reports

Status: data only, 4 datasets cited

[38463] doi:10.1038/s41598-023-29307-3 [paper, repository]

Seeing inferences: brain dynamics and oculomotor signatures of non-verbal deduction.

Journal: Scientific reports

Authors' code: OSF bp8wu (no license)

Status: code verified, 4 files readable

[38464] doi:10.1186/s12864-023-09162-2 [paper, data]

Morphometric analysis of the size-adjusted linear dimensions of the skull landmarks revealed craniofacial dysmorphology in Mid1-cKO mice.

Journal: BMC genomics

Status: data only, 9 datasets cited

[38465] doi:10.1186/s12885-022-10491-w [paper, data]

Pan-cancer analysis: predictive role of TAP1 in cancer prognosis and response to immunotherapy.

Journal: BMC cancer

Status: data only, 2 datasets cited

[38466] doi:10.1186/s13229-023-00537-6 [paper, repository]

Sensory salience processing moderates attenuated gazes on faces in autism spectrum disorder: a case-control study.

Journal: Molecular autism

Authors' code: nicobast/project_video_salience (no license)

Status: code verified, 32 files readable, 6 matches

[38467] doi:10.1371/journal.pbio.3001947 [paper, data]

Different congenital hydrocephalus-associated mutations in Trim71 impair stem cell differentiation via distinct gain-of-function mechanisms.

Journal: PLoS biology

Status: data only, 1 dataset cited

[38468] doi:10.1371/journal.pcbi.1010899 [paper, repository]

An electrophysiological and kinematic model of Paramecium, the "swimming neuron".

Journal: PLoS computational biology

Authors' code: romainbrette/clampy (no license), romainbrette/Paramecium-model (GPL-3.0), Zenodo 6074480 (CC-BY-4.0), Zenodo 4601961 (cecill-2.1)

Status: code verified, 198 files readable, 20 matches

[38469] doi:10.1371/journal.pone.0269856 [paper, repository]

Neural response generation for task completion using conversational knowledge graph.

Journal: PloS one

Authors' code: xiul-msr/e2e_dialog_challenge (no license)

Status: code verified, 37 files readable

[38470] doi:10.1371/journal.pone.0278765 [paper, repository]

A method for non-destructive microwave focusing for deep brain and tissue stimulation.

Journal: PloS one

Authors' code: Zenodo 7452128 (CC-BY-4.0)

Status: code verified

[38471] doi:10.1371/journal.pone.0280855 [paper, repository]

Cerebral blood volume sensitive layer-fMRI in the human auditory cortex at 7T: Challenges and capabilities.

Journal: PloS one

Authors' code: layerfMRI/repository (no license), Zenodo 6936693 (CC-BY-4.0)

Status: code verified, 493 files readable, 4 matches

[38472] doi:10.1371/journal.pone.0281388 [paper, data]

Effects of footshock stress on social behavior and neuronal activation in the medial prefrontal cortex and amygdala of male and female mice.

Journal: PloS one

Status: data only, 1 dataset cited

[38473] doi:10.1523/jneurosci.1424-22.2022 [paper]

Deep Neural Networks and Visuo-Semantic Models Explain Complementary Components of Human Ventral-Stream Representational Dynamics.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[38474] doi:10.21037/qims-22-891 [paper, data]

Relationship between development of the condylar cortex and the changes in condyle morphology: a cone-beam computed tomography (CBCT) observational study.

Journal: Quantitative imaging in medicine and surgery

Status: data only, 1 dataset cited

[38475] doi:10.3389/fimmu.2023.1105489 [paper, repository]

Functional characterization of TSPAN7 as a novel indicator for immunotherapy in glioma.

Journal: Frontiers in immunology

Authors' code: theMILOlab/SPATAData (no license)

Status: code verified, 32 files readable

[38476] doi:10.3390/genes14020454 [paper, repository]

Temporal and Spatial Gene Expression Profile of Stroke Recovery Genes in Mice.

Journal: Genes

Authors' code: aswendtlab/AIDAmri (GPL-3.0)

Status: code verified, 111 files readable, 4 matches

[38477] doi:10.3390/healthcare11040507 [paper, repository]

A Low-Cost System Using a Big-Data Deep-Learning Framework for Assessing Physical Telerehabilitation: A Proof-of-Concept.

Journal: Healthcare (Basel, Switzerland)

Authors' code: admirable-ubu/FIS-FBIS (GPL-3.0)

Status: code verified, 21 files readable, 2 matches

[38478] doi:10.3390/s23041959 [paper, repository]

Explainable Artificial Intelligence (XAI) in Pain Research: Understanding the Role of Electrodermal Activity for Automated Pain Recognition.

Journal: Sensors (Basel, Switzerland)

Authors' code: gouverneurp/XAIinPainResearch (no license)

Status: code verified, 12 files readable, 15 matches

Wednesday, 8 February 2023 (26 papers)

[38479] doi:10.1016/j.crmeth.2023.100407 [paper]

A versatile vessel casting method for fine mapping of vascular networks using a hydrogel-based lipophilic dye solution.

Journal: Cell reports methods

Status: code on request

[38480] doi:10.1016/j.cub.2023.01.032 [paper]

Neuronal excitability as a regulator of circuit remodeling.

Journal: Current biology : CB

Status: code on request

[38481] doi:10.1016/j.heliyon.2023.e13449 [paper, repository]

Novel image analysis tool for rapid screening of cell morphology in preclinical animal models of disease.

Journal: Heliyon

Authors' code: Lein-Lab/microglia-phenotyping (no license)

Status: code verified, 275 files readable, 3 matches

[38482] doi:10.1016/j.isci.2023.106164 [paper, repository]

Single-cell RNA sequencing identifies hippocampal microglial dysregulation in diet-induced obesity.

Journal: iScience

Authors' code: hurlab/HF_iScience (GPL-3.0), ElisaYork/3DMorph (MIT), aertslab/AUCell (no license)

Status: code verified, 98 files readable, 7 matches

[38483] doi:10.1016/j.nicl.2023.103345 [paper]

Pre- and post-task resting-state differs in clinical populations.

Journal: NeuroImage. Clinical

Status: code on request

[38484] doi:10.1038/s41467-023-36096-w [paper, repository]

CryoET reveals organelle phenotypes in huntington disease patient iPSC-derived and mouse primary neurons.

Journal: Nature communications

Authors' code: sanketx/mitochondria_segmentation (MIT)

Status: code verified, 6 files readable

[38485] doi:10.1038/s41586-023-05705-5 [paper]

The cellular coding of temperature in the mammalian cortex.

Journal: Nature

Status: code on request

[38486] doi:10.1038/s41598-023-29010-3 [paper, repository]

Diffusion MRI approaches for investigating microstructural complexity in a rat model of traumatic brain injury.

Journal: Scientific reports

Authors' code: mjnissi/aedes (GPL-2.0)

Status: code verified, 108 files readable, 3 matches

[38487] doi:10.1038/s41598-023-29190-y [paper, repository]

Consistency of frontal cortex metabolites quantified by magnetic resonance spectroscopy within overlapping small and large voxels.

Journal: Scientific reports

Authors' code: HarrisBrainLab/TissueCorrections (no license)

Status: code verified, 3 files readable, 1 match

[38488] doi:10.1038/s41598-023-29434-x [paper, data]

Larger error negativity peak amplitudes for accuracy versus speed instructions may reflect more neuro-cognitive alignment, not more intense error processing.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38489] doi:10.1085/jgp.202213170 [paper, data]

Similar voltage-sensor movement in spHCN channels can cause closing, opening, or inactivation.

Journal: The Journal of general physiology

Status: data only, 3 datasets cited

[38490] doi:10.1098/rsos.221453 [paper, repository]

The impact of age-related increase in passive muscle stiffness on simulated upper limb reaching.

Journal: Royal Society open science

Authors' code: tmmurtola/reaching-arm-model (no license), Zenodo 7545405 (other-open), doi:10.6084/m9.figshare.c.6412215 (no license)

Status: code verified, 8 files readable, 1 match

[38491] doi:10.1098/rspb.2022.2319 [paper, repository]

Circadian rhythm entrainment of the jewel wasp, <i>Nasonia vitripennis</i>, by antagonistic interactions of multiple spectral inputs.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.5061/dryad.bk3j9kdgk (no license), doi:10.6084/m9.figshare.c.6403953 (no license)

Status: code verified

[38492] doi:10.1111/cns.14110 [paper, repository]

Genetic architecture of hippocampus subfields volumes in Alzheimer's disease.

Journal: CNS neuroscience & therapeutics

Authors' code: stu5 (no license)

Status: code verified

[38493] doi:10.1111/cns.14113 [paper, data]

Exosomal miR-128-3p reversed fibrinogen-mediated inhibition of oligodendrocyte progenitor cell differentiation and remyelination after cerebral ischemia.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[38494] doi:10.1126/sciadv.abo1095 [paper, repository]

From scanner to court: A neuroscientifically informed "reasonable person" test of trademark infringement.

Journal: Science advances

Authors' code: OSF n328c (no license)

Status: empty repository

[38495] doi:10.1126/sciadv.abo5627 [paper, data]

Coordinated activity of a central pathway drives associative opioid analgesic tolerance.

Journal: Science advances

Status: data only, 1 dataset cited

[38496] doi:10.1126/sciadv.abq7459 [paper]

Anti-seed PNAs targeting multiple oncomiRs for brain tumor therapy.

Journal: Science advances

Status: data only

[38497] doi:10.1212/nxi.0000000000200066 [paper]

Impaired Brain Growth in Myelin Oligodendrocyte Glycoprotein Antibody-Associated Acute Disseminated Encephalomyelitis.

Journal: Neurology(R) neuroimmunology & neuroinflammation

Status: code on request

[38498] doi:10.1371/journal.pone.0281094 [paper, repository]

Concentration of non-myocyte proteins in arterial media of cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy.

Journal: PloS one

Authors' code: michaelwanglab/vesseg (no license)

Status: dead link

[38499] doi:10.1523/eneuro.0345-22.2022 [paper, repository]

Multimodal Brain Signal Complexity Predicts Human Intelligence.

Journal: eNeuro

Authors' code: jonasAthiele/BrainComplexity_Intelligence (no license), Zenodo 7258768 (other-open)

Status: code verified, 20 files readable, 6 matches

[38500] doi:10.3389/fimmu.2022.1095657 [paper, data]

Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[38501] doi:10.3390/cells12040545 [paper, repository]

An Optimized Workflow to Generate and Characterize iPSC-Derived Motor Neuron (MN) Spheroids.

Journal: Cells

Authors' code: OSF v84ws (no license), Zenodo 3738286 (CC-BY-4.0)

Status: empty repository

[38502] doi:10.3390/s23041914 [paper, repository]

A Convolutional Neural Network and Graph Convolutional Network Based Framework for AD Classification.

Journal: Sensors (Basel, Switzerland)

Authors' code: tkipf/pygcn (MIT)

Status: code verified, 8 files readable

[38503] doi:10.7554/elife.78689 [paper, data]

Targeted anatomical and functional identification of antinociceptive and pronociceptive serotonergic neurons that project to the spinal dorsal horn.

Journal: eLife

Status: data only, 2 datasets cited

[38504] doi:10.7554/elife.80667 [paper, repository]

A unified neural account of contextual and individual differences in altruism.

Journal: eLife

Authors' code: OSF kpgsa (no license)

Status: code verified

Tuesday, 7 February 2023 (31 papers, 24 on this page)

[38505] doi:10.1002/btm2.10496 [paper, data]

Non-invasive treatment of ischemia/reperfusion injury: Effective transmission of therapeutic near-infrared light into the human brain through soft skin-conforming silicone waveguides.

Journal: Bioengineering & translational medicine

Status: data only, 2 datasets cited

[38506] doi:10.1007/s11060-023-04254-1 [paper, repository]

The impact of brain lesions on health-related quality of life in patients with WHO CNS grade 3 or 4 glioma: a lesion-function and resting-state fMRI analysis.

Journal: Journal of neuro-oncology

Authors' code: NeuroAI-HD/HDGLIO-AUTO (no license)

Status: dead link

[38507] doi:10.1007/s11357-023-00738-0 [paper, repository]

The cerebellum is causally involved in episodic memory under aging.

Journal: GeroScience

Authors' code: maismemoria/preprocessing (no license)

Status: code verified, 223 files readable, 4 matches

[38508] doi:10.1016/j.ebiom.2023.104455 [paper, repository]

Altered global signal topography in Alzheimer's disease.

Journal: EBioMedicine

Authors' code: YongLiuLab (no license)

Status: code verified

[38509] doi:10.1038/s41380-023-01970-y [paper, repository]

Identification of brain cell types underlying genetic association with word reading and correlated traits.

Journal: Molecular psychiatry

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 3 matches

[38510] doi:10.1038/s41421-022-00498-9 [paper, repository]

Adenosine-independent regulation of the sleep-wake cycle by astrocyte activity.

Journal: Cell discovery

Authors' code: aludnam/matlab (no license)

Status: code verified, 1,759 files readable

[38511] doi:10.1038/s41467-023-36388-1 [paper, repository]

JNK signaling in pioneer neurons organizes ventral nerve cord architecture in Drosophila embryos.

Journal: Nature communications

Authors' code: TimSaundersLab (no license), Zenodo 7547719 (other-open), timsaunderslab/cns-paper (CC0-1.0)

Status: code verified, 64 files readable

[38512] doi:10.1038/s41597-023-01978-7 [paper, repository]

Datasets for learning of unknown characteristics of dynamical systems.

Journal: Scientific data

Authors' code: draugustyn/signal-data (no license)

Status: code verified, 52 files readable

[38513] doi:10.1111/bpa.13153 [paper, data]

Genomic profiling and prognostic factors of H3 K27M-mutant spinal cord diffuse glioma.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only, 1 dataset cited

[38514] doi:10.1148/radiol.221425 [paper, repository]

Multicenter Evaluation of AI-generated DIR and PSIR for Cortical and Juxtacortical Multiple Sclerosis Lesion Detection.

Journal: Radiology

Authors' code: MrtnStnwk/DeepContrast (no license)

Status: code verified, 9 files readable

[38515] doi:10.1152/ajpgi.00280.2022 [paper, data]

Sensitization of colonic nociceptors by IL-13 is dependent on JAK and p38 MAPK activity.

Journal: American journal of physiology. Gastrointestinal and liver physiology

Status: data only, 2 datasets cited

[38516] doi:10.1155/2023/2663150 [paper, data]

Fault-Level Grading of Photovoltaic Cells Employing Lightweight Deep Learning Models.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[38517] doi:10.1186/s12915-022-01509-7 [paper, repository]

A nontuberculous mycobacterium could solve the mystery of the lady from the Franciscan church in Basel, Switzerland.

Journal: BMC biology

Authors' code: SegataLab/cmseq (MIT)

Status: code verified, 11 files readable

[38518] doi:10.1186/s12938-023-01076-0 [paper]

Estimating the neural spike train from an unfused tetanic signal of low-threshold motor units using convolutive blind source separation.

Journal: Biomedical engineering online

Status: code on request

[38519] doi:10.1186/s13014-023-02216-5 [paper, data]

Radiosurgery of limited brain metastases from primary solid tumor: results of the randomized phase III trial (NCT02355613) comparing treatments executed with a specialized or a C-arm linac-based platform.

Journal: Radiation oncology (London, England)

Status: data only, 2 datasets cited

[38520] doi:10.1371/journal.pcbi.1010865 [paper, repository]

Temporal progression along discrete coding states during decision-making in the mouse gustatory cortex.

Journal: PLoS computational biology

Authors' code: llang6/temporal-progression (no license)

Status: code verified, 70 files readable, 24 matches

[38521] doi:10.3389/fimmu.2023.1123652 [paper, data]

Discovering hematoma-stimulated circuits for secondary brain injury after intraventricular hemorrhage by spatial transcriptome analysis.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[38522] doi:10.3389/fnins.2022.1065366 [paper, repository]

On the accuracy of code complexity metrics: A neuroscience-based guideline for improvement.

Journal: Frontiers in neuroscience

Authors' code: shorturl.at/dht79 (no license)

Status: code verified

[38523] doi:10.3389/fnins.2023.1007580 [paper, repository]

An investigation of the association between focal damage and global network properties in cognitively impaired and cognitively preserved patients with multiple sclerosis.

Journal: Frontiers in neuroscience

Authors' code: ekaden/smt (BSD-2-Clause)

Status: code verified, 41 files readable, 1 match

[38524] doi:10.3389/fnmol.2022.1019173 [paper, data]

Very early environmental enrichment protects against apoptosis and improves functional recovery from hypoxic-ischemic brain injury.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[38525] doi:10.3389/fphar.2023.1034248 [paper, data]

Neurocognitive effects of binge drinking on verbal episodic memory. An ERP study in university students.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[38526] doi:10.3389/fphar.2023.1112758 [paper, data]

Purinergic signaling: A gatekeeper of blood-brain barrier permeation.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[38527] doi:10.3390/bios13020238 [paper, repository]

A Lightweight Deep Learning Based Microwave Brain Image Network Model for Brain Tumor Classification Using Reconstructed Microwave Brain (RMB) Images.

Journal: Biosensors

Authors' code: Amran038/Microwave-Brain-Image (no license)

Status: dead link

[38528] doi:10.3390/ijms24043320 [paper, repository]

Conditional Ablation of Glucocorticoid and Mineralocorticoid Receptors from Cochlear Supporting Cells Reveals Their Differential Roles for Hearing Sensitivity and Dynamics of Recovery from Noise-Induced Hearing Loss.

Journal: International journal of molecular sciences

Authors' code: ccaiman/data_processing (CC0-1.0)

Status: code verified, 6 files readable, 2 matches

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.