Every paper, by date: page 173

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 173 of 200: 7 February 2023 to 29 January 2023.

Tuesday, 7 February 2023 (31 papers, 7 on this page)

[38529] doi:10.3390/s23041870 [paper, repository]

Neural Networks Application for Accurate Retina Vessel Segmentation from OCT Fundus Reconstruction.

Journal: Sensors (Basel, Switzerland)

Authors' code: przemyslaw-zaradzki/retina-unet_MSc (MIT), przemyslaw-zaradzki/IterNet_MSc (MIT), przemyslaw-zaradzki/BCDU-Net_MSc (no license), przemyslaw-zaradzki/SA-UNet (no license), przemyslaw-zaradzki/FR-UNet (MIT), krzyk87/OCTAnnotate (no license)

Status: code verified, 105 files readable, 10 matches

[38530] doi:10.3390/s23041874 [paper, data]

Designing an Embedded Feature Selection Algorithm for a Drowsiness Detector Model Based on Electroencephalogram Data.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[38531] doi:10.7554/elife.74899 [paper, repository]

A transcriptional constraint mechanism limits the homeostatic response to activity deprivation in mammalian neocortex.

Journal: eLife

Authors' code: VH-Lab/vhlab-TwoPhoton-matlab (MIT)

Status: code verified, 218 files readable

[38532] doi:10.7554/elife.81279 [paper, repository]

Granger causality analysis for calcium transients in neuronal networks, challenges and improvements.

Journal: eLife

Authors' code: statbiophys/zebrafishGC (GPL-3.0)

Status: code verified, 29 files readable, 11 matches

[38533] doi:10.7554/elife.83062 [paper, repository]

Multiple polarity kinases inhibit phase separation of F-BAR protein Cdc15 and antagonize cytokinetic ring assembly in fission yeast.

Journal: eLife

Authors' code: aah217/KH_LAMMPS (CC-BY-4.0), aah217/HPS_LAMMPS (no license), aah217/Cdc15_CGMD (no license)

Status: code verified, 17 files readable

[38534] doi:10.7554/elife.83176 [paper, data]

Microglial motility is modulated by neuronal activity and correlates with dendritic spine plasticity in the hippocampus of awake mice.

Journal: eLife

Status: data only, 1 dataset cited

[38535] doi:10.7717/peerj.14738 [paper, data]

Bioinformatic prediction of the molecular links between Alzheimer's disease and diabetes mellitus.

Journal: PeerJ

Status: data only, 1 dataset cited

Monday, 6 February 2023 (27 papers)

[38536] doi:10.1002/hbm.26224 [paper, repository]

A preliminary choroid plexus volumetric study in individuals with psychosis.

Journal: Human brain mapping

Authors' code: pnlbwh/pnlpipe (other)

Status: code verified, 68 files readable

[38537] doi:10.1016/j.dcn.2023.101209 [paper, repository]

Effects of prenatal cannabis exposure on developmental trajectory of cognitive ability and brain volumes in the adolescent brain cognitive development (ABCD) study.

Journal: Developmental cognitive neuroscience

Authors' code: OSF t7y3s (no license)

Status: code verified, 10 files readable, 7 matches

[38538] doi:10.1016/j.dcn.2023.101211 [paper, repository]

Corpus callosum structural characteristics in very preterm children and adolescents: Developmental trajectory and relationship to cognitive functioning.

Journal: Developmental cognitive neuroscience

Authors' code: OSF h6t2k (no license)

Status: empty repository

[38539] doi:10.1016/j.fmre.2023.01.007 [paper, repository]

Detecting dynamical causality by intersection cardinal concavity.

Journal: Fundamental research

Authors' code: PengTao-HUST/crossmapy (MIT)

Status: code verified, 31 files readable, 2 matches

[38540] doi:10.1016/j.xgen.2023.100261 [paper, repository]

The Foundational Data Initiative for Parkinson Disease: Enabling efficient translation from genetic maps to mechanism.

Journal: Cell genomics

Authors' code: FOUNDINPD (no license), FOUNDINPD/METH (no license), FOUNDINPD/ATACseq_bulk (no license), FOUNDINPD/HiC_Pipelines (no license), FOUNDINPD/bulk_RNASeq (no license), FOUNDINPD/exceRpt_smallRNAseq (no license), FOUNDINPD/FOUNDIN_scRNA (no license), FOUNDINPD/FOUNDIN_scATAC (no license), FOUNDINPD/SCRN_EQTL_v2 (no license)

Status: code verified, 30 files readable, 13 matches

[38541] doi:10.1038/s41398-023-02309-5 [paper]

Multiple measurement analysis of resting-state fMRI for ADHD classification in adolescent brain from the ABCD study.

Journal: Translational psychiatry

Status: code on request

[38542] doi:10.1038/s41398-023-02312-w [paper, repository]

Cerebro-cerebellar functional neuroplasticity mediates the effect of electric field on electroconvulsive therapy outcomes.

Journal: Translational psychiatry

Authors' code: trendscenter.org/software/gift (no license)

Status: code verified

[38543] doi:10.1038/s41556-022-01058-9 [paper]

Polarized branched Actin modulates cortical mechanics to produce unequal-size daughters during asymmetric division.

Journal: Nature cell biology

Status: code on request

[38544] doi:10.1038/s41593-023-01257-z [paper, data]

Perivascular cells induce microglial phagocytic states and synaptic engulfment via SPP1 in mouse models of Alzheimer's disease.

Journal: Nature neuroscience

Status: data only, 9 datasets cited

[38545] doi:10.1038/s41598-023-28381-x [paper, data]

In silico analysis of TUBA4A mutations in Amyotrophic Lateral Sclerosis to define mechanisms of microtubule disintegration.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38546] doi:10.1073/pnas.2023481120 [paper, data]

"Self-inactivating" rabies viruses are susceptible to loss of their intended attenuating modification.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38547] doi:10.1073/pnas.2210953120 [paper, repository]

Epigenetic function during heroin self-administration controls future relapse-associated behavior in a cell type-specific manner.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: BertoLabMUSC/AndersonEtAl_HDAC5 (no license)

Status: code verified, 18 files readable

[38548] doi:10.1073/pnas.2212256120 [paper]

Brain aerobic glycolysis and resilience in Alzheimer disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[38549] doi:10.1073/pnas.2215423120 [paper, repository]

Restricted language access during childhood affects adult brain structure in selective language regions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7402337 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[38550] doi:10.1155/2023/5803661 [paper, data]

A Multi-Thresholding-Based Discriminative Neural Classifier for Detection of Retinoblastoma Using CNN Models.

Journal: BioMed research international

Status: data only, 1 dataset cited

[38551] doi:10.1186/s12964-023-01038-y [paper, data]

CEBPα/miR-101b-3p promotes meningoencephalitis in mice infected with Angiostrongylus cantonensis by promoting microglial pyroptosis.

Journal: Cell communication and signaling : CCS

Status: data only, 12 datasets cited

[38552] doi:10.1186/s12987-023-00412-9 [paper]

Impact of aging on meningeal gene expression.

Journal: Fluids and barriers of the CNS

Status: data only

[38553] doi:10.1371/journal.pbio.3001986 [paper, data]

Day-night and seasonal variation of human gene expression across tissues.

Journal: PLoS biology

Status: data only, 2 datasets cited

[38554] doi:10.1371/journal.pcbi.1010864 [paper, repository]

A linear discriminant analysis model of imbalanced associative learning in the mushroom body compartment.

Journal: PLoS computational biology

Authors' code: flatironinstitute/bio-lda (no license)

Status: code verified, 2 files readable

[38555] doi:10.1371/journal.pone.0281236 [paper, repository]

Combined segmentation and classification-based approach to automated analysis of biomedical signals obtained from calcium imaging.

Journal: PloS one

Authors' code: gizemdursun/automated-analysis-of-biomedical-signals-obtained-from-calcium-imaging (no license)

Status: code verified, 11 files readable, 3 matches

[38556] doi:10.1371/journal.pone.0281337 [paper, repository]

Imputation of missing values for cochlear implant candidate audiometric data and potential applications.

Journal: PloS one

Authors' code: cdpavelchek/OtoImpute (no license)

Status: dead link

[38557] doi:10.2196/41173 [paper, data]

Effectiveness of an Individualized Exergame-Based Motor-Cognitive Training Concept Targeted to Improve Cognitive Functioning in Older Adults With Mild Neurocognitive Disorder: Study Protocol for a Randomized Controlled Trial.

Journal: JMIR research protocols

Status: data only, 2 datasets cited

[38558] doi:10.3390/ijms24043181 [paper, data]

FUS Alters circRNA Metabolism in Human Motor Neurons Carrying the ALS-Linked P525L Mutation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38559] doi:10.3390/ijms24043199 [paper, data]

Heterogeneity of Amino Acid Profiles of Proneural and Mesenchymal Brain-Tumor Initiating Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38560] doi:10.3390/mi14020400 [paper, data]

Easily Attach/Detach Reattachable EEG Headset with Candle-like Microneedle Electrodes.

Journal: Micromachines

Status: data only, 1 dataset cited

[38561] doi:10.7554/elife.81843 [paper, data]

Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.

Journal: eLife

Status: data only, 1 dataset cited

[38562] doi:10.7554/elife.82103 [paper, repository]

Activity in developing prefrontal cortex is shaped by sleep and sensory experience.

Journal: eLife

Authors' code: lexjgomez/Gomez_et_al_2023 (no license)

Status: code verified, 3 files readable

Sunday, 5 February 2023 (2 papers)

[38563] doi:10.3390/brainsci13020268 [paper, data]

Convolutional Neural Network with a Topographic Representation Module for EEG-Based Brain-Computer Interfaces.

Journal: Brain sciences

Status: data only, 2 datasets cited

[38564] doi:10.7150/thno.77041 [paper, repository]

First <i>in vivo</i> fluorine-19 magnetic resonance imaging of the multiple sclerosis drug siponimod.

Journal: Theranostics

Authors' code: Zenodo 6507817 (other-open), ludgers/mrsartifactremoval (GPL-3.0)

Status: code verified, 42 files readable, 4 matches

Saturday, 4 February 2023 (8 papers)

[38565] doi:10.1016/j.brs.2023.02.002 [paper, repository]

Lateral cerebellothalamic tract activation underlies DBS therapy for Essential Tremor.

Journal: Brain stimulation

Authors' code: github.umn.edu/nrtl/pathwaymodels_et-dbs (no license)

Status: code verified

[38566] doi:10.1016/j.heliyon.2023.e13466 [paper, data]

Moyamoya syndrome secondary to mitochondrial disease in a patient with partial trisomy 13q14 and 13q31: A novel case report and literature review.

Journal: Heliyon

Status: data only, 1 dataset cited

[38567] doi:10.1038/s41467-023-36324-3 [paper, repository]

An updated suite of viral vectors for in vivo calcium imaging using intracerebral and retro-orbital injections in male mice.

Journal: Nature communications

Authors' code: frederikrogge/calcium-sensor-analysis (no license)

Status: code verified, 3 files readable, 1 match

[38568] doi:10.1038/s41598-023-29118-6 [paper, data]

Nicotine exposure decreases likelihood of SARS-CoV-2 RNA expression and neuropathology in the hACE2 mouse brain but not moribundity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38569] doi:10.1038/s41598-023-29124-8 [paper, data]

Face pareidolia is enhanced by 40 Hz transcranial alternating current stimulation (tACS) of the face perception network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38570] doi:10.1093/braincomms/fcad022 [paper]

The neural correlates of emotional conflict monitoring as an early manifestation of affective and cognitive declines in persons with Type 2 diabetes.

Journal: Brain communications

Status: code on request

[38571] doi:10.1093/nc/niac019 [paper, repository]

Adaptation in the sensory cortex drives bistable switching during auditory stream segregation.

Journal: Neuroscience of consciousness

Authors' code: OSF ytsn5 (no license)

Status: code verified, 5 files readable, 2 matches

[38572] doi:10.1186/s13072-023-00479-6 [paper, data]

The impact of spatial correlation on methylation entropy with application to mouse brain methylome.

Journal: Epigenetics & chromatin

Status: data only, 1 dataset cited

Friday, 3 February 2023 (24 papers)

[38573] doi:10.1016/j.ebiom.2023.104457 [paper, repository]

Zika virus leads to olfactory disorders in mice by targeting olfactory ensheathing cells.

Journal: EBioMedicine

Authors' code: annoroad/fqtools_plus (no license)

Status: code verified, 12 files readable, 1 match

[38574] doi:10.1016/j.isci.2023.106125 [paper, repository]

GRHL2 and AP2a coordinate early surface ectoderm lineage commitment during development.

Journal: iScience

Authors' code: robinweide/GENOVA (GPL-3.0), gangwug/limma (no license), OroLabStanford/SNP_Prioritization_Pipeline (no license), OroLabStanford (no license)

Status: code verified, 163 files readable, 4 matches

[38575] doi:10.1016/j.isci.2023.106133 [paper]

Muscarinic acetylcholine receptor-dependent and NMDA receptor-dependent LTP and LTD share the common AMPAR trafficking pathway.

Journal: iScience

Status: code on request

[38576] doi:10.1016/j.mex.2023.102019 [paper, repository]

A two for one special: EEG hyperscanning using a single-person EEG recording setup.

Journal: MethodsX

Authors' code: hdl.handle.net/10222/80821 (no license), OSF w2dc6 (no license)

Status: code verified, 1 file readable, 2 matches

[38577] doi:10.1016/j.neuroimage.2023.119926 [paper, repository]

Reduced emergent character of neural dynamics in patients with a disrupted connectome.

Journal: NeuroImage

Authors' code: robince/partial-info-decomp (GPL-3.0), concog/fastdmf (BSD-3-Clause)

Status: code verified, 338 files readable, 4 matches

[38578] doi:10.1038/s41398-023-02332-6 [paper]

Maternal preconception circulating blood biomarker mixtures, child behavioural symptom scores and the potential mediating role of neonatal brain microstructure: the S-PRESTO cohort.

Journal: Translational psychiatry

Status: code on request

[38579] doi:10.1038/s41467-023-36311-8 [paper, data]

Alternative polyadenylation transcriptome-wide association study identifies APA-linked susceptibility genes in brain disorders.

Journal: Nature communications

Status: data only, 4 datasets cited

[38580] doi:10.1038/s41598-023-29205-8 [paper, repository]

The effect of mindfulness-based intervention on neurobehavioural functioning and its association with white-matter microstructural changes in preterm young adolescents.

Journal: Scientific reports

Authors' code: danizoeller/myPLS (GPL-2.0)

Status: code verified, 37 files readable, 2 matches

[38581] doi:10.1038/s41598-023-29310-8 [paper]

The effect of temporal expectation on the correlations of frontal neural activity with alpha oscillation and sensory-motor latency.

Journal: Scientific reports

Status: code on request

[38582] doi:10.1038/s42003-023-04527-5 [paper, repository]

Neural fatigue by passive induction: repeated stimulus exposure results in cognitive fatigue and altered representations in task-relevant networks.

Journal: Communications biology

Authors' code: Zenodo 7565991 (other-open), ste-ioan/nfbpi (no license)

Status: code verified, 48 files readable, 3 matches

[38583] doi:10.1111/pcn.13523 [paper, repository]

A circuit-based approach to modulate hypersexuality in Parkinson's disease.

Journal: Psychiatry and clinical neurosciences

Authors' code: cinac-cognition/tms_fmri_dti_hypersexual_pd (no license)

Status: code verified, 60 files readable, 5 matches

[38584] doi:10.1111/pcn.13530 [paper, data]

Structural and functional features of treatment-resistant depression: A systematic review and exploratory coordinate-based meta-analysis of neuroimaging studies.

Journal: Psychiatry and clinical neurosciences

Status: data only, 12 datasets cited

[38585] doi:10.1186/s12974-023-02693-1 [paper, data]

5-HT attenuates chronic stress-induced cognitive impairment in mice through intestinal flora disruption.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[38586] doi:10.1371/journal.pcbi.1010335 [paper, repository]

Model of neural induction in the ascidian embryo.

Journal: PLoS computational biology

Authors' code: rossanabettoni/Model-of-neural-induction-in-the-ascidian-embryo (no license)

Status: code verified, 29 files readable, 4 matches

[38587] doi:10.1371/journal.pcbi.1010811 [paper, repository]

LSD-induced increase of Ising temperature and algorithmic complexity of brain dynamics.

Journal: PLoS computational biology

Authors' code: giulioruffini/LSD-paper-code-Ruffini-et-al.-2022 (no license), giulioruffini/StarLZW (GPL-3.0), decolab/cb-neuromod (no license)

Status: code verified, 41 files readable, 6 matches

[38588] doi:10.1538/expanim.22-0145 [paper, data]

FERM domain containing kindlin 1 knockdown attenuates inflammation induced by intracerebral hemorrhage in rats via NLR family pyrin domain containing 3/nuclear factor kappa B pathway.

Journal: Experimental animals

Status: data only, 1 dataset cited

[38589] doi:10.3389/fncir.2023.1076761 [paper, repository]

Reduced oriens-lacunosum/moleculare cell model identifies biophysical current balances for <i>in vivo</i> theta frequency spiking resonance.

Journal: Frontiers in neural circuits

Authors' code: FKSkinnerLab/Reduced_OLM_example_code (no license), nsbspl/RAUKF_OLM (MIT)

Status: code verified, 124 files readable, 3 matches

[38590] doi:10.3389/fnins.2022.972201 [paper, data]

Large-scale organoid study suggests effects of trisomy 21 on early fetal neurodevelopment are more subtle than variability between isogenic lines and experiments.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[38591] doi:10.3389/fnins.2023.1070413 [paper, repository]

Inter-rater reliability of functional MRI data quality control assessments: A standardised protocol and practical guide using pyfMRIqc.

Journal: Frontiers in neuroscience

Authors' code: elizabethbeard/mriqception (no license)

Status: code verified, 30 files readable, 1 match

[38592] doi:10.3389/fnins.2023.1113593 [paper, data]

Motor imagery classification method based on relative wavelet packet entropy brain network and improved lasso.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[38593] doi:10.3390/bios13020220 [paper, repository]

Pre-Stimulus Power but Not Phase Predicts Prefrontal Cortical Excitability in TMS-EEG.

Journal: Biosensors

Authors' code: IoSR-Surrey/MatlabToolbox (MIT)

Status: code verified, 79 files readable

[38594] doi:10.3390/molecules28031490 [paper, repository]

A Knowledge-Graph-Based Multimodal Deep Learning Framework for Identifying Drug-Drug Interactions.

Journal: Molecules (Basel, Switzerland)

Authors' code: zhangjing9965/KGCN_NFM (no license)

Status: code verified, 5 files readable, 1 match

[38595] doi:10.3390/s23031694 [paper, repository]

Convolution Neural Networks and Self-Attention Learners for Alzheimer Dementia Diagnosis from Brain MRI.

Journal: Sensors (Basel, Switzerland)

Authors' code: facebookresearch/mae (CC-BY-NC-4.0), facebookresearch/deit (Apache-2.0)

Status: code verified, 36 files readable, 2 matches

[38596] doi:10.7554/elife.80100 [paper, repository]

Cellular composition and circuit organization of the locus coeruleus of adult mice.

Journal: eLife

Authors' code: doi:10.5061/dryad.kh1893283 (no license), Zenodo 7470725 (MIT), Zenodo 7470726 (MIT)

Status: code verified

Thursday, 2 February 2023 (31 papers)

[38597] doi:10.1016/j.dcn.2023.101207 [paper, repository]

Behavioural inhibition and early neural processing of happy and angry faces interact to predict anxiety: a longitudinal ERP study.

Journal: Developmental cognitive neuroscience

Authors' code: ChildDevLab/MADE-EEG-preprocessing-pipeline (no license)

Status: code verified, 10 files readable

[38598] doi:10.1016/j.ebiom.2023.104442 [paper, repository]

The Microbiome-Gut-Brain axis regulates social cognition & craving in young binge drinkers.

Journal: EBioMedicine

Authors' code: thomazbastiaanssen/Tjazi (GPL-3.0)

Status: code verified, 24 files readable, 6 matches

[38599] doi:10.1016/j.heliyon.2023.e13426 [paper, data]

Imagining and reading actions: Towards similar motor representations.

Journal: Heliyon

Status: data only, 1 dataset cited

[38600] doi:10.1016/j.isci.2023.106123 [paper, data]

Sex peptide regulates female receptivity through serotoninergic neurons in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: iScience

Status: code on request, 1 dataset cited

[38601] doi:10.1016/j.xgen.2023.100263 [paper, repository]

Single nucleus multiomics identifies ZEB1 and MAFB as candidate regulators of Alzheimer's disease-specific &lt;i&gt;cis&lt;/i&gt;-regulatory elements.

Journal: Cell genomics

Authors' code: aanderson54/scMultiomics_AD (no license)

Status: code verified, 11 files readable, 3 matches

[38602] doi:10.1038/s41467-023-36058-2 [paper, repository]

The AAA+ chaperone VCP disaggregates Tau fibrils and generates aggregate seeds in a cellular system.

Journal: Nature communications

Authors' code: williamnwan/TOMOMAN (no license)

Status: code verified, 232 files readable, 1 match

[38603] doi:10.1038/s41467-023-36217-5 [paper, repository]

Multi-area recordings and optogenetics in the awake, behaving marmoset.

Journal: Nature communications

Authors' code: esi-neuroscience/ARCADE (GPL-3.0), PJendritza/MultiAreaOptoMarmo (GPL-3.0), Zenodo 7460362 (other-open)

Status: code verified, 560 files readable, 16 matches

[38604] doi:10.1038/s41598-023-27952-2 [paper, data]

Language combinations of multilinguals are reflected in their first-language knowledge and processing.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38605] doi:10.1038/s41598-023-28781-z [paper, repository]

Changes in pupil dilation and P300 amplitude indicate the possible involvement of the locus coeruleus-norepinephrine (LC-NE) system in psychological flow.

Journal: Scientific reports

Authors' code: OSF 4aqry (no license)

Status: code verified, 8 files readable, 2 matches

[38606] doi:10.1038/s41598-023-29231-6 [paper, data]

Different functional networks underlying human walking with pulling force fields acting in forward or backward directions.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38607] doi:10.1038/s41598-023-29251-2 [paper, data]

Characteristic cortico-cortical connection profile of human precuneus revealed by probabilistic tractography.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38608] doi:10.1038/s43587-022-00352-3 [paper, data]

Systemic GDF11 attenuates depression-like phenotype in aged mice via stimulation of neuronal autophagy.

Journal: Nature aging

Status: data only, 1 dataset cited

[38609] doi:10.1073/pnas.2205426120 [paper]

Transcytosis-mediated anterograde transport of TrkA receptors is necessary for sympathetic neuron development and function.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[38610] doi:10.1073/pnas.2212696120 [paper, data]

Distinctive transcriptomic and epigenomic signatures of bone marrow-derived myeloid cells and microglia in CNS autoimmunity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38611] doi:10.1073/pnas.2213430120 [paper, data]

Evaluating the impact of short educational videos on the cortical networks for mathematics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38612] doi:10.1073/pnas.2218915120 [paper, data]

Definition of the contribution of an Osteopontin-producing CD11c⁺ microglial subset to Alzheimer's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38613] doi:10.1186/s12974-023-02698-w [paper, data]

TNEA therapy promotes the autophagic degradation of NLRP3 inflammasome in a transgenic mouse model of Alzheimer's disease via TFEB/TFE3 activation.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[38614] doi:10.1186/s13578-023-00968-x [paper]

RNA binding protein SAMD4: current knowledge and future perspectives.

Journal: Cell & bioscience

Status: data only

[38615] doi:10.1242/dev.201008 [paper, repository]

GliaMorph: a modular image analysis toolkit to quantify Müller glial cell morphology.

Journal: Development (Cambridge, England)

Authors' code: ElisabethKugler/GliaMorph (BSD-3-Clause)

Status: empty repository, 2 files readable

[38616] doi:10.1371/journal.pcbi.1010088 [paper, repository]

Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics.

Journal: PLoS computational biology

Authors' code: hippover/gratin (MIT), hippover/palmari (CECILL-2.1), gitlab.pasteur.fr/hverdier/palm-tools (CECILL-2.1), tracktor.pasteur.cloud (no license)

Status: code verified, 127 files readable, 8 matches

[38617] doi:10.3389/fimmu.2023.1102486 [paper, data]

IL-17A expression by both T cells and non-T cells contribute to HSV-IL-2-induced CNS demyelination.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[38618] doi:10.3389/fnagi.2023.1069155 [paper, data]

Moxibustion improves hypothalamus <i>Aqp4</i> polarization in APP/PS1 mice: Evidence from spatial transcriptomics.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[38619] doi:10.3389/fncel.2023.1075005 [paper, repository]

Discrimination and learning of temporal input sequences in a cerebellar Purkinje cell model.

Journal: Frontiers in cellular neuroscience

Authors' code: kaaya542/Dicrimination-and-learning-of-temporal-input-sequences-in-a-cerebellar-Purkinje-cell-model (no license)

Status: code verified, 8 files readable

[38620] doi:10.3389/fneur.2023.1107957 [paper, repository]

The value of convolutional neural networks-based deep learning model in differential diagnosis of space-occupying brain diseases.

Journal: Frontiers in neurology

Authors' code: shaitaiyangmie/train-for-classify (no license), shaitaiyangmie/Brain-Imaging-Methods (no license)

Status: code verified, 554 files readable

[38621] doi:10.3389/fninf.2023.938689 [paper, repository]

A parameter-optimization framework for neural decoding systems.

Journal: Frontiers in neuroinformatics

Authors' code: code.umd.edu/dspcad-pub/dspcadwiki (no license)

Status: code verified

[38622] doi:10.3389/fnmol.2023.1117065 [paper]

Single-cell transcriptomic profile of satellite glial cells in trigeminal ganglion.

Journal: Frontiers in molecular neuroscience

Status: data only

[38623] doi:10.3389/fnrgo.2022.1062227 [paper, repository]

Investigating the attentional focus to workplace-related soundscapes in a complex audio-visual-motor task using EEG.

Journal: Frontiers in neuroergonomics

Authors' code: Zenodo 7147701 (CC-BY-4.0)

Status: code verified

[38624] doi:10.3389/fpsyg.2023.1070012 [paper, data]

Cognitive interventions for memory and psychological well-being in aging and dementias.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[38625] doi:10.3389/fpubh.2023.1091850 [paper, repository]

MRI brain tumor segmentation using residual Spatial Pyramid Pooling-powered 3D U-Net.

Journal: Frontiers in public health

Authors' code: sanchitvj/rsppUnet-BraTS-2021 (MIT)

Status: code verified, 20 files readable, 2 matches

[38626] doi:10.3390/biom13020283 [paper, data]

The Conserved Transcriptional Activation Activity Identified in Dual-Specificity Tyrosine-(Y)-Phosphorylation-Regulated Kinase 1.

Journal: Biomolecules

Status: data only, 1 dataset cited

[38627] doi:10.7554/elife.79642 [paper, data]

Pallidal neuromodulation of the explore/exploit trade-off in decision-making.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 1 February 2023 (72 papers)

[38628] doi:10.1007/s00429-023-02613-2 [paper]

Comparing models of information transfer in the structural brain network and their relationship to functional connectivity: diffusion versus shortest path routing.

Journal: Brain structure & function

Status: code on request

[38629] doi:10.1016/j.dib.2023.108947 [paper, data]

Data of MSCs combined with LITUS treatment to improve cognitive impairment in a moderate traumatic brain injury model in rats.

Journal: Data in brief

Status: data only, 2 datasets cited

[38630] doi:10.1016/j.neuron.2023.01.002 [paper, repository]

Agency affects pain inference through prior shift as opposed to likelihood precision modulation in a Bayesian pain model.

Journal: Neuron

Authors' code: OSF q8tgj (no license)

Status: code verified, 4 files readable, 2 matches

[38631] doi:10.1016/j.xcrm.2023.100946 [paper, repository]

Functional contribution of mesencephalic locomotor region nuclei to locomotor recovery after spinal cord injury.

Journal: Cell reports. Medicine

Authors' code: Zenodo 7618543 (other-open), Malem83/LocoMUA_MLR_SCI (MIT)

Status: code verified, 14 files readable

[38632] doi:10.1016/j.ynstr.2023.100522 [paper, data]

B2 SINE RNA as a novel regulator of glucocorticoid receptor transcriptional activity.

Journal: Neurobiology of stress

Status: data only, 1 dataset cited

[38633] doi:10.1038/s41586-022-05680-3 [paper, repository]

Single-cell spatial immune landscapes of primary and metastatic brain tumours.

Journal: Nature

Authors' code: walsh-quail-labs/IMC-Brain (no license)

Status: code verified, 28 files readable, 1 match

[38634] doi:10.1038/s42003-023-04508-8 [paper, repository]

Multivariate functional neuroimaging analyses reveal that strength-dependent face expectations are represented in higher-level face-identity areas.

Journal: Communications biology

Authors' code: OSF uygvm (no license)

Status: code verified, 31 files readable, 6 matches

[38635] doi:10.1055/s-0042-1758752 [paper, data]

Spontaneous intracranial hypotension: from cerebral venous thrombosis to neurosurgical treatment: a case series experience from a Brazilian tertiary health care center.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[38636] doi:10.1055/s-0042-1759760 [paper, data]

High performance older adults in a population-based sample with low education: Pietà study.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[38637] doi:10.1055/s-0043-1761492 [paper, data]

Correlation of brain segmental volume changes with clinical parameters: a longitudinal study in multiple sclerosis patients.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[38638] doi:10.1073/pnas.2212578120 [paper, data]

Post-transcriptional regulation in cranial neural crest cells expands developmental potential.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38639] doi:10.1073/pnas.2216192120 [paper, data]

Distinct early and late neural mechanisms regulate feature-specific sensory adaptation in the human visual system.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38640] doi:10.1089/thy.2022.0304 [paper, repository]

Exploring the Genetic Link Between Thyroid Dysfunction and Common Psychiatric Disorders: A Specific Hormonal or a General Autoimmune Comorbidity.

Journal: Thyroid : official journal of the American Thyroid Association

Authors' code: Nealelab/UK_Biobank_GWAS (no license)

Status: code verified, 52 files readable

[38641] doi:10.1093/brain/awac265 [paper, repository]

Disentangling the effects of Alzheimer's and small vessel disease on white matter fibre tracts.

Journal: Brain : a journal of neurology

Authors' code: UCL/PETPVC (Apache-2.0)

Status: code verified, 20 files readable

[38642] doi:10.1093/brain/awac290 [paper, data]

Epigenetic and integrative cross-omics analyses of cerebral white matter hyperintensities on MRI.

Journal: Brain : a journal of neurology

Status: data only, 5 datasets cited

[38643] doi:10.1093/cercor/bhac133 [paper, repository]

Stability of sensorimotor network sculpts the dynamic repertoire of resting state over lifespan.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: cbdl/workspace (no license)

Status: dead link

[38644] doi:10.1093/cercor/bhac143 [paper, repository]

Bidirectionally connected cores in a mouse connectome: towards extracting the brain subnetworks essential for consciousness.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: JunKitazono/BidirectionallyConnectedCores (no license)

Status: code verified, 15 files readable, 7 matches

[38645] doi:10.1093/cercor/bhac150 [paper, repository]

Metabolic and functional connectivity provide unique and complementary insights into cognition-connectome relationships.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF dqn5s (no license)

Status: empty repository

[38646] doi:10.1093/cercor/bhac155 [paper]

Towards automated in vivo parcellation of the human cerebral cortex using supervised classification of magnetic resonance fingerprinting residuals.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[38647] doi:10.1093/cercor/bhac159 [paper, repository]

Sleep loss disrupts the neural signature of successful learning.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF cy2s9 (no license)

Status: empty repository

[38648] doi:10.1093/cercor/bhac169 [paper, repository]

How distinct functional insular subdivisions mediate interacting neurocognitive systems.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: hashilzhao/InsulaSubregionalConnectivities (no license)

Status: code verified, 17 files readable, 1 match

[38649] doi:10.1093/cercor/bhac188 [paper]

Association between somatosensory sensitivity and regional gray matter volume in healthy young volunteers: a voxel-based morphometry study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[38650] doi:10.1093/cercor/bhac195 [paper, data]

Differential effects of group III metabotropic glutamate receptors on spontaneous inhibitory synaptic currents in spine-innervating double bouquet and parvalbumin-expressing dendrite-targeting GABAergic interneurons in human neocortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[38651] doi:10.1093/hmg/ddac249 [paper, repository]

Identifying an oligodendrocyte enhancer that regulates Olig2 expression.

Journal: Human molecular genetics

Authors' code: dixonlab/scm3C-seq (no license)

Status: code verified, 14 files readable

[38652] doi:10.1093/ijnp/pyac073 [paper, repository]

Effects of Taurine in Mice and Zebrafish Behavioral Assays With Translational Relevance to Schizophrenia.

Journal: The international journal of neuropsychopharmacology

Authors' code: OSF qy2uw (no license)

Status: empty repository

[38653] doi:10.1093/molbev/msad022 [paper, data]

Origin and Evolution of Marsupial-specific Imprinting Clusters Through Lineage-specific Gene Duplications and Acquisition of Promoter Differential Methylation.

Journal: Molecular biology and evolution

Status: data only, 1 dataset cited

[38654] doi:10.1093/molbev/msad025 [paper, repository]

Independent Innexin Radiation Shaped Signaling in Ctenophores.

Journal: Molecular biology and evolution

Authors' code: josephryan/ctenophore_innexins (GPL-3.0), Zenodo 7641399 (other-open)

Status: code verified, 8 files readable

[38655] doi:10.1093/neuonc/noac138 [paper, repository]

Dysfunctional dendritic cells limit antigen-specific T cell response in glioma.

Journal: Neuro-oncology

Authors' code: rsankowski/friedrich-et-al-IDHwt-mut-micr (no license), rsankowski/antunes_GBMm_cellphonedb (no license)

Status: dead link

[38656] doi:10.1093/scan/nsac046 [paper]

Greed personality trait links to negative psychopathology and underlying neural substrates.

Journal: Social cognitive and affective neuroscience

Status: code on request

[38657] doi:10.1093/scan/nsac049 [paper, repository]

'The Last Shot'-the shared and distinct brain regions involved in processing unexpectedness of success and failure in the context of social cooperation.

Journal: Social cognitive and affective neuroscience

Authors' code: PengSZU-Lab/social_FMRI_experiment (no license)

Status: code verified

[38658] doi:10.1093/scan/nsac050 [paper, repository]

Curiosity and mesolimbic functional connectivity drive information seeking in real life.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF dnw6p (no license)

Status: code verified, 1 file readable, 2 matches

[38659] doi:10.1093/scan/nsac053 [paper, data]

Neighborhood disadvantage, race/ethnicity and neural sensitivity to social threat and reward among adolescents.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[38660] doi:10.1093/scan/nsac057 [paper, repository]

Social cognitive processes explain bias in juror decisions.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF rk92x (no license), jcastrel/juror_fmri_bias (no license)

Status: code verified, 42 files readable, 8 matches

[38661] doi:10.1093/scan/nsac058 [paper, repository]

Social goals in girls transitioning to adolescence: associations with psychopathology and brain network connectivity.

Journal: Social cognitive and affective neuroscience

Authors' code: cran.r-project.org/package=gimme (no license)

Status: code verified

[38662] doi:10.1093/scan/nsac059 [paper]

Neural encoding of novel social networks: evidence that perceivers prioritize others' centrality.

Journal: Social cognitive and affective neuroscience

Status: code on request

[38663] doi:10.1093/scan/nsac062 [paper, data]

Longitudinal self-concept development in adolescence.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[38664] doi:10.1093/scan/nsac063 [paper, data]

Fear in the mind's eye: the neural correlates of differential fear acquisition to imagined conditioned stimuli.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[38665] doi:10.1093/scan/nsad002 [paper, repository]

Connectome-based predictive modeling of trait forgiveness.

Journal: Social cognitive and affective neuroscience

Authors' code: nitrc.org/projects/bioimagesuite (no license)

Status: code verified

[38666] doi:10.1093/scan/nsad008 [paper, repository]

Are women more empathetic than men? Questionnaire and EEG estimations of sex/gender differences in empathic ability.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF srhke (no license)

Status: code verified, 3 files readable

[38667] doi:10.1097/md.0000000000032771 [paper]

Screening and identification of hub-gene associated with brain metastasis in breast cancer.

Journal: Medicine

Status: data only

[38668] doi:10.1097/md.0000000000033094 [paper, repository]

The effect of acupuncture at the Yuji point on resting-state brain function in anxiety.

Journal: Medicine

Authors' code: fcp-indi.github.com (no license)

Status: code found, still to be checked

[38669] doi:10.1107/s1600576722011566 [paper, repository]

Machine learning for scattering data: strategies, perspectives and applications to surface scattering.

Journal: Journal of applied crystallography

Authors' code: Zenodo 6497437 (CC-BY-4.0)

Status: code verified, 2 files readable

[38670] doi:10.1111/nan.12872 [paper, data]

Epigenetic age acceleration is associated with oligodendrocyte proportions in MSA and control brain tissue.

Journal: Neuropathology and applied neurobiology

Status: data only, 1 dataset cited

[38671] doi:10.1121/10.0017328 [paper, data]

Isolating auditory-nerve contributions to electrocochleography by high-pass filtering: A better biomarker for cochlear nerve degeneration?

Journal: JASA express letters

Status: data only, 1 dataset cited

[38672] doi:10.1126/sciadv.abq3851 [paper, repository]

A spatiotemporal complexity architecture of human brain activity.

Journal: Science advances

Authors' code: OSF mr8f7 (no license), brain-networks/edge-ts (no license), gpreti/GSP_StructuralDecouplingIndex (Apache-2.0)

Status: code verified, 48 files readable, 8 matches

[38673] doi:10.1126/sciadv.add3607 [paper, repository]

SynthSR: A public AI tool to turn heterogeneous clinical brain scans into high-resolution T1-weighted images for 3D morphometry.

Journal: Science advances

Authors' code: BBillot/SynthSR (Apache-2.0)

Status: code verified, 35 files readable, 7 matches

[38674] doi:10.1126/sciadv.add9789 [paper, repository]

Chaperoning of specific tau structure by immunophilin FKBP12 regulates the neuronal resilience to extracellular stress.

Journal: Science advances

Authors' code: sokrypton/colabfold (MIT)

Status: code verified, 74 files readable

[38675] doi:10.1136/bmjopen-2022-064169 [paper, repository]

Systematic, comprehensive, evidence-based approach to identify neuroprotective interventions for motor neuron disease: using systematic reviews to inform expert consensus.

Journal: BMJ open

Authors' code: OSF ubmhe (no license)

Status: empty repository

[38676] doi:10.1167/jov.23.2.8 [paper, repository]

Temporal stability of human heading perception.

Journal: Journal of vision

Authors' code: owlayton/NM-Competitive-Dynamics-Simple_Release (GPL-3.0)

Status: code verified, 14 files readable, 1 match

[38677] doi:10.1186/s12915-023-01515-3 [paper, data]

Allele-specific quantitation of ATXN3 and HTT transcripts in polyQ disease models.

Journal: BMC biology

Status: data only, 2 datasets cited

[38678] doi:10.1186/s13059-023-02860-w [paper, data]

The collateral activity of RfxCas13d can induce lethality in a RfxCas13d knock-in mouse model.

Journal: Genome biology

Status: data only, 7 datasets cited

[38679] doi:10.1364/josaa.479986 [paper, data]

Modeling surface color discrimination under different lighting environments using image chromatic statistics and convolutional neural networks.

Journal: Journal of the Optical Society of America. A, Optics, image science, and vision

Status: data only, 1 dataset cited

[38680] doi:10.1371/journal.pcbi.1010853 [paper, repository]

Decoupling of interacting neuronal populations by time-shifted stimulation through spike-timing-dependent plasticity.

Journal: PLoS computational biology

Authors' code: MMadadiAsl/Stimulation-induced-decoupling (no license)

Status: code verified, 5 files readable, 1 match

[38681] doi:10.14336/ad.2022.0607 [paper, data]

Long RNA Profiles of Human Brain Extracellular Vesicles Provide New Insights into the Pathogenesis of Alzheimer's Disease.

Journal: Aging and disease

Status: data only, 1 dataset cited

[38682] doi:10.15252/embr.202255362 [paper, data]

NuRD-independent Mi-2 activity represses ectopic gene expression during neuronal maturation.

Journal: EMBO reports

Status: data only, 1 dataset cited

[38683] doi:10.18632/aging.204565 [paper, data]

Aging and memory are altered by genetically manipulating lactate dehydrogenase in the neurons or glia of flies.

Journal: Aging

Status: data only, 1 dataset cited

[38684] doi:10.3389/dyst.2023.10806 [paper, repository]

Laminar VASO fMRI in focal hand dystonia patients.

Journal: Dystonia (Lausanne, Switzerland)

Authors' code: layerfmri/phychopy_git (no license)

Status: code verified, 48 files readable

[38685] doi:10.3389/fcell.2023.1112062 [paper, data]

Developmental deficits of MGE-derived interneurons in the <i>Cntnap2</i> knockout mouse model of autism spectrum disorder.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[38686] doi:10.3389/fmicb.2022.1056418 [paper, repository]

<i>Naegleria</i> genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae.

Journal: Frontiers in microbiology

Authors' code: southgreenplatform/panexplorer_workflow (GPL-3.0)

Status: code verified, 72 files readable, 6 matches

[38687] doi:10.3389/fnhum.2022.1035195 [paper, repository]

Assessing awareness in severe Alzheimer's disease.

Journal: Frontiers in human neuroscience

Authors' code: renzocom/pcist (GPL-3.0)

Status: code verified, 7 files readable

[38688] doi:10.3389/fnhum.2023.1059091 [paper, repository]

Network segregation in aging females and evaluation of the impact of sex steroid hormones.

Journal: Frontiers in human neuroscience

Authors' code: jmtyszka/bidskit (MIT)

Status: code verified, 11 files readable, 1 match

[38689] doi:10.3389/fnimg.2023.1097523 [paper, repository]

A deep residual model for characterization of 5D spatiotemporal network dynamics reveals widespread spatiodynamic changes in schizophrenia.

Journal: Frontiers in neuroimaging

Authors' code: bkazemivash/BPARC (MIT)

Status: code verified, 9 files readable, 2 matches

[38690] doi:10.3389/fphar.2023.1124108 [paper, data]

Prenatal methadone exposure selectively alters protein expression in primary motor cortex: Implications for synaptic function.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[38691] doi:10.3390/bioengineering10020181 [paper, repository]

Comparing 3D, 2.5D, and 2D Approaches to Brain Image Auto-Segmentation.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: Aneja-Lab-Yale/Aneja-Lab-Public-3D2D-Segmentation (no license)

Status: code verified, 24 files readable, 3 matches

[38692] doi:10.3390/bioengineering10020186 [paper, data]

Continual Learning of a Transformer-Based Deep Learning Classifier Using an Initial Model from Action Observation EEG Data to Online Motor Imagery Classification.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[38693] doi:10.3390/ijms24032788 [paper, data]

Hypoxia Inhibits Cell Cycle Progression and Cell Proliferation in Brain Microvascular Endothelial Cells via the miR-212-3p/MCM2 Axis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38694] doi:10.3390/ijms24032791 [paper, repository]

Overexpression of the X-Linked Inhibitor of Apoptosis Protein (XIAP) in Neurons Improves Cell Survival and the Functional Outcome after Traumatic Spinal Cord Injury.

Journal: International journal of molecular sciences

Authors' code: OSF an7f2 (no license)

Status: empty repository

[38695] doi:10.3390/ijms24032823 [paper, repository]

Discovery and Validation of Circulating microRNAs as Biomarkers for Epileptogenesis after Experimental Traumatic Brain Injury-The EPITARGET Cohort.

Journal: International journal of molecular sciences

Authors' code: brian-lau/MatlabAUC (GPL-3.0)

Status: code verified, 7 files readable

[38696] doi:10.3390/ijms24032828 [paper, data]

Overnight Corticosterone and Gene Expression in Mouse Hippocampus: Time Course during Resting Period.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38697] doi:10.3390/jox13010006 [paper, data]

Geospatiotemporal and Causal Inferential Study of European Epidemiological Patterns of Cannabis- and Substance-Related Congenital Orofacial Anomalies.

Journal: Journal of xenobiotics

Status: data only, 2 datasets cited

[38698] doi:10.4103/1673-5374.346468 [paper, data]

The Alzheimer's disease-associated gene <i>TREML2</i> modulates inflammation by regulating microglia polarization and NLRP3 inflammasome activation.

Journal: Neural regeneration research

Status: data only, 2 datasets cited

[38699] doi:10.7554/elife.78511 [paper, repository]

Single-cell transcriptome profiles of &lt;i&gt;Drosophila fruitless&lt;/i&gt;-expressing neurons from both sexes.

Journal: eLife

Authors' code: cpalmateer/fruP1SC_48hrAPF (no license)

Status: code verified, 3 files readable, 19 matches

Tuesday, 31 January 2023 (30 papers)

[38700] doi:10.1016/j.celrep.2023.112056 [paper]

A context-dependent switch from sensing to feeling in the primate amygdala.

Journal: Cell reports

Status: code on request

[38701] doi:10.1016/j.isci.2023.106087 [paper, repository]

Ambient fine particulate exposure and subcortical gray matter microarchitecture in 9- and 10-year-old children across the United States.

Journal: iScience

Authors' code: figshare 21926088 (CC-BY-4.0), figshare 21926157 (CC-BY-4.0), figshare 21861894 (CC-BY-4.0)

Status: code verified, 3 files readable, 3 matches

[38702] doi:10.1016/j.isci.2023.106093 [paper, repository]

Prenatal low-dose methylmercury exposure causes premature neuronal differentiation and autism-like behaviors in a rodent model.

Journal: iScience

Authors' code: Zenodo 7468729 (other-open), jiwanglab/cortex-mehg (no license)

Status: code verified, 16 files readable, 8 matches

[38703] doi:10.1016/j.neuroimage.2023.119912 [paper, repository]

Cross-scanner harmonization methods for structural MRI may need further work: A comparison study.

Journal: NeuroImage

Authors' code: Jfortin1/ComBatHarmonization (no license), jcbeer/longCombat (Artistic-2.0)

Status: code verified, 26 files readable

[38704] doi:10.1016/j.procs.2023.01.131 [paper, data]

A non-invasive method for prediction of neurodegenerative diseases using gait signal features.

Journal: Procedia computer science

Status: data only, 1 dataset cited

[38705] doi:10.1038/s41467-023-35819-3 [paper, repository]

Entorhinal grid-like codes and time-locked network dynamics track others navigating through space.

Journal: Nature communications

Authors' code: OSF mhtgp (no license), nitrc.org/projects/gridcat (no license), www2.warwick.ac.uk/fac/sci (no license)

Status: code verified, 27 files readable, 9 matches

[38706] doi:10.1038/s41467-023-35869-7 [paper, data]

Correlated evolution of social organization and lifespan in mammals.

Journal: Nature communications

Status: data only, 1 dataset cited

[38707] doi:10.1038/s41467-023-36005-1 [paper, data]

Proteogenomics of diffuse gliomas reveal molecular subtypes associated with specific therapeutic targets and immune-evasion mechanisms.

Journal: Nature communications

Status: data only, 8 datasets cited

[38708] doi:10.1038/s41467-023-36071-5 [paper, repository]

Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples.

Journal: Nature communications

Authors' code: ludvigla/RRST (no license), Zenodo 7524632 (other-open)

Status: code verified, 9 files readable, 15 matches

[38709] doi:10.1038/s41467-023-36260-2 [paper, data]

Molecular insights into the gating mechanisms of voltage-gated calcium channel Ca_V2.3.

Journal: Nature communications

Status: data only, 4 datasets cited

[38710] doi:10.1038/s42003-023-04487-w [paper, repository]

Robust and adjustable dynamic scattering compensation for high-precision deep tissue optogenetics.

Journal: Communications biology

Authors' code: LiZhHan/fcoat (no license), Zenodo 7479131 (other-open)

Status: code verified, 18 files readable, 4 matches

[38711] doi:10.1073/pnas.2205211120 [paper, repository]

Distinct replay signatures for prospective decision-making and memory preservation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gewimmer-neuro/multistep_replay (GPL-3.0)

Status: code verified, 6 files readable

[38712] doi:10.1073/pnas.2217868120 [paper, repository]

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SysBioChalmers/SingleCellToolbox (MIT), SysBioChalmers/RAVEN (GPL-3.0), SysBioChalmers/Human-GEM (CC-BY-4.0), Zenodo 7469969 (CC-BY-4.0), SysBioChalmers/SingleCellModeling (MIT), SysBioChalmers/ftINIT (no license)

Status: code verified, 486 files readable, 14 matches

[38713] doi:10.1128/jvi.01655-22 [paper, data]

Sirtuin-2, NAD-Dependent Deacetylase, Is a New Potential Therapeutic Target for HIV-1 Infection and HIV-Related Neurological Dysfunction.

Journal: Journal of virology

Status: data only, 1 dataset cited

[38714] doi:10.1186/s13023-023-02618-4 [paper, data]

Clinical and functional characterisation of a recurrent KCNQ1 variant in the Belgian population.

Journal: Orphanet journal of rare diseases

Status: data only, 1 dataset cited

[38715] doi:10.1242/dmm.049862 [paper, data]

Signaling through the dystrophin glycoprotein complex affects the stress-dependent transcriptome in Drosophila.

Journal: Disease models & mechanisms

Status: data only, 2 datasets cited

[38716] doi:10.1371/journal.pbio.3001984 [paper, data]

Multisite imaging of neural activity using a genetically encoded calcium sensor in the honey bee.

Journal: PLoS biology

Status: data only, 1 dataset cited

[38717] doi:10.1371/journal.pcbi.1010863 [paper, repository]

maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.

Journal: PLoS computational biology

Authors' code: MiraldiLab/maxATAC (Apache-2.0), tacazares/Leopard (no license)

Status: code verified, 143 files readable, 15 matches

[38718] doi:10.1371/journal.pone.0281082 [paper, data]

Separating art from the artist: The effect of negative affective knowledge on ERPs and aesthetic experience.

Journal: PloS one

Status: data only, 1 dataset cited

[38719] doi:10.26508/lsa.202201877 [paper, data]

The ribose methylation enzyme FTSJ1 has a conserved role in neuron morphology and learning performance.

Journal: Life science alliance

Status: data only, 1 dataset cited

[38720] doi:10.3390/brainsci13020240 [paper, data]

Input Shape Effect on Classification Performance of Raw EEG Motor Imagery Signals with Convolutional Neural Networks for Use in Brain-Computer Interfaces.

Journal: Brain sciences

Status: data only, 1 dataset cited

[38721] doi:10.3390/brainsci13020245 [paper, repository]

Biologically-Based Computation: How Neural Details and Dynamics Are Suited for Implementing a Variety of Algorithms.

Journal: Brain sciences

Authors' code: ctn-waterloo/brain_sciences_biological_computation_2022 (no license)

Status: code verified, 47 files readable, 9 matches

[38722] doi:10.3390/cancers15030883 [paper, data]

PIEZO1-Related Physiological and Pathological Processes in CNS: Focus on the Gliomas.

Journal: Cancers

Status: data only, 1 dataset cited

[38723] doi:10.3390/cells12030465 [paper, repository]

Targeting Neuroinflammation with Abscisic Acid Reduces Pain Sensitivity in Females and Hyperactivity in Males of an ADHD Mice Model.

Journal: Cells

Authors' code: Zenodo 14871925 (CC-BY-4.0), sandrassb/macroglia_cell-morphology-analysis (CC-BY-4.0), Zenodo 14872354 (CC-BY-4.0), Zenodo 14922374 (CC-BY-4.0), Zenodo 14882323 (CC-BY-4.0)

Status: code verified, 2 files readable

[38724] doi:10.3390/e25020257 [paper, repository]

A Novel Temporal Network-Embedding Algorithm for Link Prediction in Dynamic Networks.

Journal: Entropy (Basel, Switzerland)

Authors' code: THUDM/cogdl (MIT), khushnood/TempNodeEmbed_upload (no license)

Status: code verified, 438 files readable, 6 matches

[38725] doi:10.3390/life13020391 [paper, repository]

On the Influence of Aging on Classification Performance in the Visual EEG Oddball Paradigm Using Statistical and Temporal Features.

Journal: Life (Basel, Switzerland)

Authors' code: NinaOmejc/VEP_classification_aging (no license)

Status: code verified, 16 files readable, 8 matches

[38726] doi:10.3758/s13414-022-02646-5 [paper, repository]

Awareness of the relative quality of spatial working memory representations.

Journal: Attention, perception & psychophysics

Authors' code: SpragueLab/wmChoose_mFiles (no license)

Status: code verified, 160 files readable, 6 matches

[38727] doi:10.3758/s13423-022-02237-3 [paper, repository]

"Reliable organisms from unreliable components" revisited: the linear drift, linear infinitesimal variance model of decision making.

Journal: Psychonomic bulletin & review

Authors' code: OSF 8na3f (no license)

Status: code verified, 21 files readable, 2 matches

[38728] doi:10.7150/ijms.80942 [paper]

Nicotinamide mononucleotides alleviated neurological impairment via anti-neuroinflammation in traumatic brain injury.

Journal: International journal of medical sciences

Status: data only

[38729] doi:10.7554/elife.67684 [paper, repository]

Interacting rhythms enhance sensitivity of target detection in a fronto-parietal computational model of visual attention.

Journal: eLife

Authors' code: benpolletta/egly-driver-network (MIT)

Status: code verified, 99 files readable

Monday, 30 January 2023 (21 papers)

[38730] doi:10.1002/aic.18061 [paper, repository]

Internal control of brain networks via sparse feedback.

Journal: AIChE journal. American Institute of Chemical Engineers

Authors' code: ece.umn.edu/users/mihailo (no license), DaoutidisLab/SparseControlBrains (no license)

Status: code verified, 4 files readable

[38731] doi:10.1002/hbm.26219 [paper, repository]

The neural representations underlying asymmetric cross-modal prediction of words.

Journal: Human brain mapping

Authors' code: leonepsy/RSA_sequence_prediction (no license)

Status: code verified, 7 files readable, 7 matches

[38732] doi:10.1007/s12311-023-01519-3 [paper, data]

Altered binaural hearing in pre-ataxic and ataxic mutation carriers of spinocerebellar ataxia type 3.

Journal: Cerebellum (London, England)

Status: data only, 1 dataset cited

[38733] doi:10.1038/s41467-023-36008-y [paper, data]

FTO-dependent m⁶A modification of Plpp3 in circSCMH1-regulated vascular repair and functional recovery following stroke.

Journal: Nature communications

Status: data only, 1 dataset cited

[38734] doi:10.1038/s41467-023-36070-6 [paper, data]

Subcellular analysis of blood-brain barrier function by micro-impalement of vessels in acute brain slices.

Journal: Nature communications

Status: data only, 1 dataset cited

[38735] doi:10.1038/s41598-023-28691-0 [paper, data]

Truncated ring-A amaryllidaceae alkaloid modulates the host cell integrated stress response, exhibiting antiviral activity to HSV-1 and SARSCoV-2.

Journal: Scientific reports

Status: data only, 1 dataset cited

[38736] doi:10.1038/s42003-023-04429-6 [paper]

A quadruple dissociation of reward-related behaviour in mice across excitatory inputs to the nucleus accumbens shell.

Journal: Communications biology

Status: code on request

[38737] doi:10.1038/s42003-023-04463-4 [paper, repository]

Purified regenerating retinal neurons reveal regulatory role of DNA methylation-mediated Na+/K+-ATPase in murine axon regeneration.

Journal: Communications biology

Authors' code: andymadrid/RGC_DNAm (no license)

Status: code verified, 1 file readable

[38738] doi:10.1109/tnsre.2022.3217469 [paper, repository]

Mitigating Mismatch Compression in Differential Local Field Potentials.

Journal: IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society

Authors' code: virati/mismatch_compression (GPL-3.0), pypi.org/project/dbspace (no license)

Status: code verified, 36 files readable, 2 matches

[38739] doi:10.1158/2767-9764.crc-22-0243 [paper]

MEK5-ERK5 Axis Promotes Self-renewal and Tumorigenicity of Glioma Stem Cells.

Journal: Cancer research communications

Status: data only

[38740] doi:10.1186/s12974-023-02701-4 [paper, data]

Inhibition of 2-arachidonoylglycerol degradation enhances glial immunity by single-cell transcriptomic analysis.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[38741] doi:10.1242/dev.201228 [paper, repository]

Single-cell RNA-based phenotyping reveals a pivotal role of thyroid hormone receptor alpha for hypothalamic development.

Journal: Development (Cambridge, England)

Authors' code: SpielmannLab/2022_TRalpha1_Sreenivasan (no license)

Status: code verified, 34 files readable, 12 matches

[38742] doi:10.1371/journal.pbio.3001985 [paper, repository]

Neural responses in macaque prefrontal cortex are linked to strategic exploration.

Journal: PLoS biology

Authors' code: Zenodo 7464572 (other-at), jangrohn/macaqueexploration (no license)

Status: code verified, 6 files readable, 4 matches

[38743] doi:10.1371/journal.pcbi.1010813 [paper, repository]

Bayesian reconstruction of memories stored in neural networks from their connectivity.

Journal: PLoS computational biology

Authors' code: sgoldt/reconstructing_memories (no license)

Status: code verified, 13 files readable, 3 matches

[38744] doi:10.1523/eneuro.0157-22.2023 [paper, repository]

Cardiac and Gastric Interoceptive Awareness Have Distinct Neural Substrates.

Journal: eNeuro

Authors' code: OSF xxxxx (no license)

Status: dead link

[38745] doi:10.1590/1678-4685-gmb-2022-0268 [paper, data]

Interchromosomal translocation in neural progenitor cells exposed to L1 retrotransposition.

Journal: Genetics and molecular biology

Status: data only, 1 dataset cited

[38746] doi:10.3389/fnins.2022.1073800 [paper, data]

Quality control practices in FMRI analysis: Philosophy, methods and examples using AFNI.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[38747] doi:10.3389/fsurg.2023.992936 [paper, data]

A prediction model for in-hospital mortality in intensive care unit patients with metastatic cancer.

Journal: Frontiers in surgery

Status: data only, 1 dataset cited

[38748] doi:10.3390/biomedicines11020408 [paper, data]

The Vascular-Immune Hypothesis of Alzheimer's Disease.

Journal: Biomedicines

Status: data only, 1 dataset cited

[38749] doi:10.3390/ijms24032597 [paper, repository]

Reactivity Graph Yields Interpretable IgM Repertoire Signatures as Potential Tumor Biomarkers.

Journal: International journal of molecular sciences

Authors' code: ansts/TAAIgM (no license)

Status: code verified, 21 files readable, 5 matches

[38750] doi:10.3390/pharmaceutics15020455 [paper, data]

Low-Intensity Pulsed Ultrasound-Mediated Blood-Brain Barrier Opening Increases Anti-Programmed Death-Ligand 1 Delivery and Efficacy in Gl261 Mouse Model.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

Sunday, 29 January 2023 (5 papers, 2 on this page)

[38751] doi:10.1016/j.celrep.2023.112053 [paper]

Cortical neuronal assemblies coordinate with EEG microstate dynamics during resting wakefulness.

Journal: Cell reports

Status: code on request

[38752] doi:10.1016/j.xpro.2023.102078 [paper, repository]

A practical guide to deep-learning light-field microscopy for 3D imaging of biological dynamics.

Journal: STAR protocols

Authors' code: Zenodo 7502869 (other-open), Zenodo 7568424 (CC-BY-4.0), feilab-hust/vcd-net (MIT)

Status: code verified, 80 files readable, 2 matches

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