Every paper, by date: page 174

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 174 of 200: 29 January 2023 to 17 January 2023.

Sunday, 29 January 2023 (5 papers, 3 on this page)

[38753] doi:10.3390/biomedicines11020403 [paper]

Assessment of Brainstem Functional Organization in Healthy Adults and Overactive Bladder Patients Using Ultra-High Field fMRI.

Journal: Biomedicines

Status: code on request

[38754] doi:10.3390/cancers15030825 [paper, repository]

Mapping Resection Progress by Tool-Tip Tracking during Brain Tumor Surgery for Real-Time Estimation of Residual Tumor.

Journal: Cancers

Authors' code: sarahfrisken/continuous-monitoring-tracking (GPL-2.0)

Status: code verified, 5 files readable

[38755] doi:10.3390/life13020368 [paper, data]

Multiclass Mask Classification with a New Convolutional Neural Model and Its Real-Time Implementation.

Journal: Life (Basel, Switzerland)

Status: data only, 2 datasets cited

Saturday, 28 January 2023 (15 papers)

[38756] doi:10.1002/hipo.23502 [paper, data]

In vitro characterization on the role of APOE polymorphism in human hippocampal neurogenesis.

Journal: Hippocampus

Status: data only, 2 datasets cited

[38757] doi:10.1007/s00221-023-06545-5 [paper, repository]

Longitudinal changes in global structural brain connectivity and cognitive performance in former hospitalized COVID-19 survivors: an exploratory study.

Journal: Experimental brain research

Authors' code: treanus/KUL_NIS (MPL-2.0)

Status: code verified, 59 files readable, 3 matches

[38758] doi:10.1007/s10571-023-01319-7 [paper, data]

Gut Microbial Alteration in MPTP Mouse Model of Parkinson Disease is Administration Regimen Dependent.

Journal: Cellular and molecular neurobiology

Status: data only, 1 dataset cited

[38759] doi:10.1016/j.isci.2023.106073 [paper]

Cognitive impairments in a Down syndrome model with abnormal hippocampal and prefrontal dynamics and cytoarchitecture.

Journal: iScience

Status: code on request

[38760] doi:10.1016/j.nicl.2023.103338 [paper]

Brain diffusion alterations in patients with COVID-19 pathology and neurological manifestations.

Journal: NeuroImage. Clinical

Status: code on request

[38761] doi:10.1016/j.xpro.2023.102074 [paper, repository]

Protocol for in vivo imaging and analysis of brainstem neuronal activity in the dorsal raphe nucleus of freely behaving mice.

Journal: STAR protocols

Authors' code: zhoupc/CNMF_E (GPL-3.0), Kang-Miller-Labs/DRN-Imaging-STAR-Protocols (no license), Zenodo 7497993 (other-open)

Status: code verified, 1,136 files readable, 7 matches

[38762] doi:10.1038/s41598-023-28210-1 [paper, repository]

A comparison of manual and automated neural architecture search for white matter tract segmentation.

Journal: Scientific reports

Authors' code: MIC-DKFZ/TractSeg (Apache-2.0), aritche/white-matter-segmentation (no license)

Status: code verified, 117 files readable, 4 matches

[38763] doi:10.1038/s42003-023-04474-1 [paper, repository]

Distributed harmonic patterns of structure-function dependence orchestrate human consciousness.

Journal: Communications biology

Authors' code: spin-test/spin-test (MIT), jlizier/jidt (gpl)

Status: code verified, 665 files readable, 2 matches

[38764] doi:10.1038/s42003-023-04481-2 [paper, repository]

Multivariate EEG activity reflects the Bayesian integration and the integrated Galilean relative velocity of sensory motion during sensorimotor behavior.

Journal: Communications biology

Authors' code: semoconlab.com/codes/reliability-weighted-information-integration (no license), dropbox.com/scl/fo (no license), Zenodo 7529737 (CC-BY-4.0)

Status: code verified, 9 files readable

[38765] doi:10.1093/noajnl/vdad006 [paper, repository]

Automatic detection and segmentation of postoperative cerebellar damage based on normalization.

Journal: Neuro-oncology advances

Authors' code: zhangsilu17/cb_norm_damage (Apache-2.0)

Status: code verified, 15 files readable, 5 matches

[38766] doi:10.3390/brainsci13020221 [paper, repository]

Subject Separation Network for Reducing Calibration Time of MI-Based BCI.

Journal: Brain sciences

Authors' code: NeuroTechX/moabb (BSD-3-Clause), brandonlist/eSSN (no license)

Status: code verified, 313 files readable, 4 matches

[38767] doi:10.3390/cells12030432 [paper]

Brain Macro-Structural Alterations in Aging Rats: A Longitudinal Lifetime Approach.

Journal: Cells

Status: code on request

[38768] doi:10.3390/diagnostics13030477 [paper, data]

An Approach toward Artificial Intelligence Alzheimer's Disease Diagnosis Using Brain Signals.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[38769] doi:10.3390/jimaging9020029 [paper, repository]

OMNI-CONV: Generalization of the Omnidirectional Distortion-Aware Convolutions.

Journal: Journal of imaging

Authors' code: COATZ/OMNI-CONV (no license)

Status: code verified, 5 files readable

[38770] doi:10.3390/nu15030674 [paper, repository]

Association between Coffee Consumption and Brain MRI Parameters in the Hamburg City Health Study.

Journal: Nutrients

Authors' code: csi-hamburg/csiframe (MIT)

Status: code verified, 80 files readable

Friday, 27 January 2023 (17 papers)

[38771] doi:10.1016/j.dcn.2023.101202 [paper, repository]

Preterm birth and neonatal white matter microstructure in in-vivo reconstructed fiber tracts among audiovisual integration brain regions.

Journal: Developmental cognitive neuroscience

Authors' code: BioMedIA/dhcp-structural-pipeline (Apache-2.0), ecr05/dHCP_template_alignment (MIT), OSF 24hcb (no license)

Status: code verified, 1,268 files readable, 20 matches

[38772] doi:10.1016/j.dcn.2023.101203 [paper, repository]

Automated and manual segmentation of the hippocampus in human infants.

Journal: Developmental cognitive neuroscience

Authors' code: ntblab/infant_neuropipe (gnu)

Status: code verified, 126 files readable, 2 matches

[38773] doi:10.1016/j.neuroimage.2023.119907 [paper, data]

The contribution of dynamics to macaque body and face patch responses.

Journal: NeuroImage

Status: code on request, 1 dataset cited

[38774] doi:10.1038/s41467-023-36083-1 [paper, repository]

Gold nanoparticle-enhanced X-ray microtomography of the rodent reveals region-specific cerebrospinal fluid circulation in the brain.

Journal: Nature communications

Authors' code: 4dfp.readthedocs.io (no license), hackercd/Pan_Registration (no license)

Status: code verified

[38775] doi:10.1038/s41467-023-36124-9 [paper, repository]

Cellular senescence in malignant cells promotes tumor progression in mouse and patient Glioblastoma.

Journal: Nature communications

Authors' code: bellenger-l/glioblastoma_senescence (no license), Zenodo 7525302 (other-open)

Status: code verified, 14 files readable, 6 matches

[38776] doi:10.1038/s41467-023-36174-z [paper, data]

Redox-dependent Igfbp2 signaling controls Brca1 DNA damage response to govern neural stem cell fate.

Journal: Nature communications

Status: data only, 1 dataset cited

[38777] doi:10.1038/s41598-023-27903-x [paper, repository]

Investigation of genetic variants and causal biomarkers associated with brain aging.

Journal: Scientific reports

Authors' code: Flumenlucidum/Brain-Aging (no license)

Status: code verified, 17 files readable, 8 matches

[38778] doi:10.1038/s41598-023-28326-4 [paper]

The effects of distractors on brightness perception based on a spiking network.

Journal: Scientific reports

Status: code on request

[38779] doi:10.1038/s41598-023-28667-0 [paper]

Relationships between serotonin availability and frontolimbic response to fearful and threatening faces.

Journal: Scientific reports

Status: code on request

[38780] doi:10.1038/s41598-023-28834-3 [paper, repository]

Foundations of human spatial problem solving.

Journal: Scientific reports

Authors' code: CogControl/GolsaOrigTreasureHunt (GPL-3.0)

Status: code verified, 19 files readable, 4 matches

[38781] doi:10.1038/s42003-023-04442-9 [paper, repository]

Exploration driven by a medial preoptic circuit facilitates fear extinction in mice.

Journal: Communications biology

Authors' code: Daegun-Kim/MIDAS (no license), Zenodo 7437597 (other-open), jiaryoo/jia-ryoo (no license)

Status: code verified, 6 files readable

[38782] doi:10.1038/s42003-023-04503-z [paper, data]

Fetal temporal sulcus depth asymmetry has prognostic value for language development.

Journal: Communications biology

Status: data only, 1 dataset cited

[38783] doi:10.1186/s12868-023-00775-7 [paper, data]

Influence of sex, age and diabetes on brain transcriptome and proteome modifications following cerebral ischemia.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[38784] doi:10.3389/frdem.2023.1098693 [paper, data]

Cognitive trajectories during the menopausal transition.

Journal: Frontiers in dementia

Status: data only, 1 dataset cited

[38785] doi:10.3390/cells12030420 [paper, data]

The Breakthroughs and Caveats of Using Human Pluripotent Stem Cells in Modeling Alzheimer's Disease.

Journal: Cells

Status: data only, 1 dataset cited

[38786] doi:10.3390/genes14020325 [paper, data]

Extracellular Vesicles as Potential Biomarkers in Amyotrophic Lateral Sclerosis.

Journal: Genes

Status: data only, 4 datasets cited

[38787] doi:10.3390/ijerph20032241 [paper]

Effects of Bilateral Extracephalic Transcranial Direct Current Stimulation on Lower Limb Kinetics in Countermovement Jumps.

Journal: International journal of environmental research and public health

Status: code on request

Thursday, 26 January 2023 (18 papers)

[38788] doi:10.1002/advs.202204596 [paper, data]

Nano-Brake Halts Mitochondrial Dysfunction Cascade to Alleviate Neuropathology and Rescue Alzheimer's Cognitive Deficits.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 3 datasets cited

[38789] doi:10.1016/j.xpro.2022.101967 [paper, data]

Generation of glutamatergic/GABAergic neuronal co-cultures derived from human induced pluripotent stem cells for characterizing E/I balance in vitro.

Journal: STAR protocols

Status: data only, 5 datasets cited

[38790] doi:10.1021/acsomega.2c07904 [paper]

Decoding the Role of MDM2 as a Potential Ubiquitin E3 Ligase and Identifying the Therapeutic Efficiency of Alkaloids against MDM2 in Combating Glioblastoma.

Journal: ACS omega

Status: data only

[38791] doi:10.1038/s41467-023-36004-2 [paper, data]

TadA reprogramming to generate potent miniature base editors with high precision.

Journal: Nature communications

Status: data only, 2 datasets cited

[38792] doi:10.1038/s41587-022-01648-w [paper, repository]

Spatial transcriptomics for profiling the tropism of viral vectors in tissues.

Journal: Nature biotechnology

Authors' code: GradinaruLab/useqfish_probedesign (no license), GradinaruLab/useqfish_imaging (no license), GradinaruLab/useqfish_analysis (GPL-3.0)

Status: code verified, 35 files readable, 12 matches

[38793] doi:10.1186/s12888-023-04551-z [paper, repository]

Gaze-based attention refocusing training in virtual reality for adult attention-deficit/hyperactivity disorder.

Journal: BMC psychiatry

Authors' code: OSF 6a23b (no license)

Status: code verified, 1 file readable, 1 match

[38794] doi:10.1186/s13073-023-01155-w [paper, data]

The neuroimmune axis of Alzheimer's disease.

Journal: Genome medicine

Status: data only, 1 dataset cited

[38795] doi:10.1186/s40035-023-00336-2 [paper, data]

Combined metabolic activators improve cognitive functions in Alzheimer's disease patients: a randomised, double-blinded, placebo-controlled phase-II trial.

Journal: Translational neurodegeneration

Status: data only, 7 datasets cited

[38796] doi:10.1371/journal.pcbi.1010380 [paper, repository]

Information theoretic evidence for layer- and frequency-specific changes in cortical information processing under anesthesia.

Journal: PLoS computational biology

Authors' code: pwollstadt/idtxl (GPL-3.0)

Status: code verified, 165 files readable, 1 match

[38797] doi:10.3389/fnbeh.2023.1080366 [paper, repository]

Optimizing the mnemonic similarity task for efficient, widespread use.

Journal: Frontiers in behavioral neuroscience

Authors' code: StarkLabUCI/oMST-Data (no license), celstark/oMST (no license), celstark/MST (no license)

Status: code verified, 136 files readable

[38798] doi:10.3389/fnbot.2022.1034615 [paper, repository]

Neural signatures of visuo-motor integration during human-robot interactions.

Journal: Frontiers in neurorobotics

Authors' code: chai3d.org/download/releases (no license), sissymarche/SEP_VRMimic_Study (no license)

Status: code verified, 2 files readable, 1 match

[38799] doi:10.3389/fneur.2022.1064639 [paper, data]

Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[38800] doi:10.3389/fnins.2023.1000079 [paper, repository]

Inferring the basis of binaural detection with a modified autoencoder.

Journal: Frontiers in neuroscience

Authors' code: Hearing-Sciences/BinauralDetection_DNN (Apache-2.0)

Status: code verified, 9 files readable, 2 matches

[38801] doi:10.3389/fphys.2023.1076533 [paper, repository]

Virtual Fly Brain-An interactive atlas of the <i>Drosophila</i> nervous system.

Journal: Frontiers in physiology

Authors' code: VirtualFlyBrain (no license), virtualflybrain/vfb_similarity_import (no license), Zenodo 21969181 (CC-BY-4.0), Zenodo 23503375 (CC-BY-4.0), Zenodo 23399606 (CC-BY-4.0), Zenodo 22981671 (CC-BY-4.0), Zenodo 22981542 (CC-BY-4.0), Zenodo 22296422 (CC-BY-4.0), Zenodo 22246427 (CC-BY-4.0), Zenodo 21969182 (CC-BY-4.0), Zenodo 21966040 (Apache-2.0), phenoscape/owlery (MIT), Zenodo 21966041 (Apache-2.0)

Status: code verified, 59 files readable, 1 match

[38802] doi:10.3390/cancers15030760 [paper, repository]

Plasma nanoDSF Denaturation Profile at Baseline Is Predictive of Glioblastoma EGFR Status.

Journal: Cancers

Authors' code: RemiEyraud/EGFR_amplification_detection (CC0-1.0)

Status: code verified, 2 files readable, 1 match

[38803] doi:10.3390/insects14020131 [paper, data]

Species Identification of the Major Japanese Encephalitis Vectors within the <i>Culex vishnui</i> Subgroup (Diptera: Culicidae) in Thailand Using Geometric Morphometrics and DNA Barcoding.

Journal: Insects

Status: data only, 1 dataset cited

[38804] doi:10.7554/elife.77009 [paper, repository]

Signal denoising through topographic modularity of neural circuits.

Journal: eLife

Authors' code: Zenodo 6326496 (no license), Zenodo 582645 (GPL-2.0), Zenodo 2605422 (lgpl-2.0-or-later), rcfduarte/nmsat (GPL-2.0)

Status: code verified, 201 files readable, 2 matches

[38805] doi:10.7554/elife.77701 [paper, repository]

Novel analytical tools reveal that local synchronization of cilia coincides with tissue-scale metachronal waves in zebrafish multiciliated epithelia.

Journal: eLife

Authors' code: Jurisch-Yaksi-lab/CiliaCoordination (GPL-3.0), icemtel/reconstruct3d_opt (no license), icemtel/stokes (MIT), icemtel/carpet (MIT)

Status: code verified, 167 files readable, 9 matches

Wednesday, 25 January 2023 (23 papers)

[38806] doi:10.1002/mrm.29597 [paper, repository]

Toward a realistic in silico abdominal phantom for QSM.

Journal: Magnetic resonance in medicine

Authors' code: qsm1/realistic_abdominal_phantom (no license)

Status: code verified, 38 files readable, 1 match

[38807] doi:10.1016/j.celrep.2023.112037 [paper]

The selective autophagy adaptor p62/SQSTM1 forms phase condensates regulated by HSP27 that facilitate the clearance of damaged lysosomes via lysophagy.

Journal: Cell reports

Status: code on request

[38808] doi:10.1016/j.crneur.2023.100075 [paper, repository]

Layer-specific correlates of detected and undetected auditory targets during attention.

Journal: Current research in neurobiology

Authors' code: srikash/presurfer (no license)

Status: code verified, 6 files readable, 1 match

[38809] doi:10.1016/j.isci.2023.106038 [paper, repository]

Developmental change in predictive motor abilities.

Journal: iScience

Authors' code: swpark7948/PredictionDevelopment (no license)

Status: code verified, 16 files readable

[38810] doi:10.1016/j.neuroimage.2023.119902 [paper, repository]

Prioritizing flexible working memory representations through retrospective attentional strengthening.

Journal: NeuroImage

Authors' code: DongweiLi1/Codes-of-Li-et-al.-Neuroimage-2023 (no license)

Status: code verified, 15 files readable, 3 matches

[38811] doi:10.1038/s41467-023-35825-5 [paper, repository]

Optogenetic frequency scrambling of hippocampal theta oscillations dissociates working memory retrieval from hippocampal spatiotemporal codes.

Journal: Nature communications

Authors' code: etterguillaume/MiniscopeAnalysis (GPL-3.0), zhoupc/CNMF_E (GPL-3.0), Zenodo 7391146 (other-open), etterguillaume/etter_et_al_2022 (MIT)

Status: code verified, 594 files readable, 14 matches

[38812] doi:10.1038/s42003-023-04446-5 [paper, repository]

Intersecting distributed networks support convergent linguistic functioning across different languages in bilinguals.

Journal: Communications biology

Authors' code: ShujieGeng/Brain-Loads-for-Linguisitic-Components (no license)

Status: code verified, 18 files readable, 2 matches

[38813] doi:10.1038/s42256-022-00599-w [paper, repository]

Emergent behaviour and neural dynamics in artificial agents tracking odour plumes.

Journal: Nature machine intelligence

Authors' code: BruntonUWBio/plumetracknets (MIT)

Status: code verified, 34 files readable, 6 matches

[38814] doi:10.1073/pnas.2210038120 [paper, data]

The fidelity of transcription in human cells.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38815] doi:10.1073/pnas.2210698120 [paper, repository]

Ripples in macaque V1 and V4 are modulated by top-down visual attention.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jafardm/Ripple_Attention_V1_V4 (no license)

Status: code verified, 76 files readable, 5 matches

[38816] doi:10.1098/rsob.220254 [paper, data]

Carbonic anhydrases in development: morphological observations and gene expression profiling in sea urchin embryos exposed to acetazolamide.

Journal: Open biology

Status: data only, 1 dataset cited

[38817] doi:10.1186/s12868-022-00765-1 [paper, repository]

SUFI: an automated approach to spectral unmixing of fluorescent multiplex images captured in mouse and post-mortem human brain tissues.

Journal: BMC neuroscience

Authors' code: LieberInstitute/SUFI (MIT), figshare 13577840 (CC-BY-4.0)

Status: code verified, 30 files readable, 4 matches

[38818] doi:10.1186/s40359-023-01055-z [paper]

Using computer-based habit versus chess-based cognitive remediation training as add-on therapy to modify the imbalance between habitual behavior and cognitive control in tobacco use disorder: protocol of a randomized controlled, fMRI study.

Journal: BMC psychology

Status: code on request

[38819] doi:10.1212/nxg.0000000000200048 [paper, repository]

Novel Homozygous Variant in <i>COQ7</i> in Siblings With Hereditary Motor Neuropathy.

Journal: Neurology. Genetics

Authors' code: ccmbioinfo/crg2 (Apache-2.0)

Status: code verified, 175 files readable

[38820] doi:10.1523/eneuro.0422-22.2023 [paper, repository]

Opponent Learning with Different Representations in the Cortico-Basal Ganglia Circuits.

Journal: eNeuro

Authors' code: kenjimoritagithub/sr5 (no license)

Status: code verified, 23 files readable, 6 matches

[38821] doi:10.3389/fnagi.2023.1087749 [paper, data]

Opposite pattern of transcranial direct current stimulation effects in middle-aged and older adults: Behavioral and neurophysiological evidence.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[38822] doi:10.3389/fncom.2022.950489 [paper, repository]

Degeneracy and stability in neural circuits of dopamine and serotonin neuromodulators: A theoretical consideration.

Journal: Frontiers in computational neuroscience

Authors' code: ckbehera/degeneracy (no license)

Status: code verified, 16 files readable, 2 matches

[38823] doi:10.3389/fncom.2023.1011814 [paper, repository]

Biophysical parameters control signal transfer in spiking network.

Journal: Frontiers in computational neuroscience

Authors' code: VisualNeuroscience-UH/SystemTools (GPL-3.0), VisualNeuroscience-UH/CxSystem2 (MIT), machenslab/spikes (no license)

Status: code verified, 111 files readable, 18 matches

[38824] doi:10.3389/fnetp.2023.1072815 [paper, data]

Neuron arbor geometry is sensitive to the limited-range fractal properties of their dendrites.

Journal: Frontiers in network physiology

Status: data only, 1 dataset cited

[38825] doi:10.3389/fnins.2022.1088116 [paper, data]

Exploration of sleep function connection and classification strategies based on sub-period sleep stages.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[38826] doi:10.3389/fnmol.2023.1115569 [paper, data]

Electroacupuncture alleviates perioperative hypothalamus-pituitary-adrenal axis dysfunction <i>via</i> circRNA-miRNA-mRNA networks.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[38827] doi:10.3390/ijerph20032146 [paper, data]

Links between COVID-19 and Alzheimer's Disease-What Do We Already Know?

Journal: International journal of environmental research and public health

Status: data only, 1 dataset cited

[38828] doi:10.3390/ijms24032367 [paper]

Prediction Model for Sensory Perception Abnormality in Autism Spectrum Disorder.

Journal: International journal of molecular sciences

Status: data only

Tuesday, 24 January 2023 (20 papers)

[38829] doi:10.1002/hbm.26216 [paper, data]

Prenatal depressive symptoms and childhood development of brain limbic and default mode network structure.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[38830] doi:10.1016/j.bpsgos.2023.01.003 [paper, repository]

Transcranial Magnetic Stimulation-Induced Heart-Brain Coupling: Implications for Site Selection and Frontal Thresholding-Preliminary Findings.

Journal: Biological psychiatry global open science

Authors' code: brainclinics/NCGTMS-2.0 (no license)

Status: dead link

[38831] doi:10.1016/j.csbj.2023.01.025 [paper, data]

Investigating cellular heterogeneity at the single-cell level by the flexible and mobile extrachromosomal circular DNA.

Journal: Computational and structural biotechnology journal

Status: data only, 1 dataset cited

[38832] doi:10.1016/j.nbas.2023.100066 [paper, data]

Glial cell transcriptome analyses in 3xTg-AD mice: Effects of aging, disease progression, and anti-Aβ immunotherapy.

Journal: Aging brain

Status: data only, 9 datasets cited

[38833] doi:10.1016/j.nbd.2023.106019 [paper]

Evoked resonant neural activity in subthalamic local field potentials reflects basal ganglia network dynamics.

Journal: Neurobiology of disease

Status: code on request

[38834] doi:10.1016/j.xgen.2022.100250 [paper, repository]

Protein interaction studies in human induced neurons indicate convergent biology underlying autism spectrum disorders.

Journal: Cell genomics

Authors' code: lagelab/ASD_PPI (MIT), Zenodo 7366631 (other-open), LieberInstitute/HumanPilot (Artistic-2.0)

Status: code verified, 120 files readable, 31 matches

[38835] doi:10.1038/s41467-022-35654-y [paper, repository]

Neural mechanisms underlying the hierarchical construction of perceived aesthetic value.

Journal: Nature communications

Authors' code: wikiart.org (no license), hiroyuki-kasai/SparseGDLibrary (MIT), kiigaya/Art (no license)

Status: code verified, 60 files readable, 3 matches

[38836] doi:10.1038/s41597-022-01886-2 [paper, repository]

Brain Data Standards - A method for building data-driven cell-type ontologies.

Journal: Scientific data

Authors' code: obophenotype/brain_data_standards_queries (Apache-2.0), obophenotype/brain_data_standards_ontologies (Apache-2.0), JCVenterInstitute/NSForest (MIT), Zenodo 7082530 (other-open), Zenodo 6643629 (other-open), incatools/ontology-access-kit (Apache-2.0), virtualflybrain/neo4j2owl (Apache-2.0)

Status: code verified, 743 files readable, 2 matches

[38837] doi:10.1073/pnas.2212418120 [paper, data]

Spatial coding in the hippocampus and hyperpallium of flying owls.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[38838] doi:10.1073/pnas.2217327120 [paper, data]

Faulty TRPM4 channels underlie age-dependent cerebral vascular dysfunction in Gould syndrome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38839] doi:10.1186/s10020-023-00603-y [paper]

Gene targeting in amyotrophic lateral sclerosis using causality-based feature selection and machine learning.

Journal: Molecular medicine (Cambridge, Mass.)

Status: code on request

[38840] doi:10.1186/s13244-022-01332-2 [paper]

Preoperative pain hypersensitivity is associated with axial pain after posterior cervical spinal surgeries in degenerative cervical myelopathy patients: a preliminary resting-state fMRI study.

Journal: Insights into imaging

Status: code on request

[38841] doi:10.1186/s13578-023-00961-4 [paper]

Predictive biomarkers for the responsiveness of recurrent glioblastomas to activated killer cell immunotherapy.

Journal: Cell & bioscience

Status: data only

[38842] doi:10.3389/fimmu.2023.1028775 [paper, data]

Integrative analysis of single-cell transcriptomics reveals age-associated immune landscape of glioblastoma.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[38843] doi:10.3389/fmicb.2022.1047121 [paper, data]

Effects of electroacupuncture on urinary metabolome and microbiota in presenilin1/2 conditional double knockout mice.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[38844] doi:10.3389/fphys.2023.1110550 [paper]

CellPalmSeq: A curated RNAseq database of palmitoylating and de-palmitoylating enzyme expression in human cell types and laboratory cell lines.

Journal: Frontiers in physiology

Status: data only

[38845] doi:10.3390/biomedicines11020327 [paper, data]

A Siamese Network-Based Method for Improving the Performance of Sleep Staging with Single-Channel EEG.

Journal: Biomedicines

Status: data only, 1 dataset cited

[38846] doi:10.7554/elife.78344 [paper, repository]

A hardware system for real-time decoding of in vivo calcium imaging data.

Journal: eLife

Authors' code: zhe-ch/ACTEV (BSD-2-Clause)

Status: code verified, 458 files readable, 4 matches

[38847] doi:10.7554/elife.78397 [paper, data]

Infant brain regional cerebral blood flow increases supporting emergence of the default-mode network.

Journal: eLife

Status: data only, 1 dataset cited

[38848] doi:10.7554/elife.84856 [paper, repository]

Selective integration of diverse taste inputs within a single taste modality.

Journal: eLife

Authors' code: flypad.rocks (no license), avdevineni/taste-activation (no license)

Status: code verified, 3 files readable, 4 matches

Monday, 23 January 2023 (21 papers)

[38849] doi:10.1007/s10142-023-00969-6 [paper, data]

Altered vitamin B12 metabolism in the central nervous system is associated with the modification of ribosomal gene expression: new insights from comparative RNA dataset analysis.

Journal: Functional & integrative genomics

Status: data only, 1 dataset cited

[38850] doi:10.1016/j.isci.2023.106026 [paper, repository]

Effects of neuromodulation-inspired mechanisms on the performance of deep neural networks in a spatial learning task.

Journal: iScience

Authors' code: LPompe/gridtorch (no license)

Status: code verified, 19 files readable, 1 match

[38851] doi:10.1016/j.isci.2023.106029 [paper, repository]

A quantitative evaluation of topological motifs and their coupling in gene circuit state distributions.

Journal: iScience

Authors' code: Zenodo 7534936 (CC-BY-4.0)

Status: code verified, 29 files readable, 2 matches

[38852] doi:10.1016/j.knosys.2023.110324 [paper, data]

Cross-platform privacy-preserving CT image COVID-19 diagnosis based on source-free domain adaptation.

Journal: Knowledge-based systems

Status: data only, 3 datasets cited

[38853] doi:10.1038/s41380-023-01954-y [paper]

Divergent projections of the prelimbic cortex mediate autism- and anxiety-like behaviors.

Journal: Molecular psychiatry

Status: code on request

[38854] doi:10.1038/s41398-023-02318-4 [paper, repository]

Whole-brain tracking of cocaine and sugar rewards processing.

Journal: Translational psychiatry

Authors' code: BijochLukasz/Whole-brain-tracking-of-cocaine-and-sugar-rewards-processing (no license)

Status: code verified, 4 files readable, 1 match

[38855] doi:10.1038/s41467-023-36014-0 [paper, repository]

Cross-species transcriptomic atlas of dorsal root ganglia reveals species-specific programs for sensory function.

Journal: Nature communications

Authors' code: gillislab/MetaNeighbor (MIT), cxli233/customized_upset_plots (CC0-1.0)

Status: code verified, 25 files readable, 1 match

[38856] doi:10.1038/s41467-023-36054-6 [paper, data]

Post-transcriptional control of a stemness signature by RNA-binding protein MEX3A regulates murine adult neurogenesis.

Journal: Nature communications

Status: data only, 2 datasets cited

[38857] doi:10.1038/s41593-022-01245-9 [paper, repository]

Pyramidal cell types drive functionally distinct cortical activity patterns during decision-making.

Journal: Nature neuroscience

Authors' code: churchlandlab.dgsom.ucla.edu/pages/code (no license)

Status: dead link

[38858] doi:10.1117/1.nph.10.1.015003 [paper, repository]

All-optical observation on activity-dependent nanoscale dynamics of myelinated axons.

Journal: Neurophotonics

Authors' code: Neurophoton (no license)

Status: code verified

[38859] doi:10.1155/2023/7037124 [paper, data]

An Extension Network of Dendritic Neurons.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[38860] doi:10.1186/s12911-023-02114-6 [paper, repository]

MRI-based brain tumor detection using convolutional deep learning methods and chosen machine learning techniques.

Journal: BMC medical informatics and decision making

Authors' code: kaggle.com/sartajbhuvaji/brain-tumor-classification-mri (no license)

Status: dead link

[38861] doi:10.1371/journal.pcbi.1010819 [paper, repository]

Improving the validity of neuroimaging decoding tests of invariant and configural neural representation.

Journal: PLoS computational biology

Authors' code: OSF z2h9w (no license)

Status: code verified, 10 files readable

[38862] doi:10.1371/journal.pcbi.1010855 [paper, repository]

Relating local connectivity and global dynamics in recurrent excitatory-inhibitory networks.

Journal: PLoS computational biology

Authors' code: shaonannan/Relating_Local_Conn_Global_Dyns (MIT)

Status: code verified, 14 files readable, 1 match

[38863] doi:10.1371/journal.pone.0279881 [paper, repository]

Stimulus-induced narrow-band gamma oscillations in humans can be recorded using open-hardware low-cost EEG amplifier.

Journal: PloS one

Authors' code: FlyingFordAnglia/OpenBCIGammaProject (no license)

Status: code verified, 42 files readable, 13 matches

[38864] doi:10.3389/fnins.2023.1093865 [paper, data]

NeuroCARE: A generic neuromorphic edge computing framework for healthcare applications.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[38865] doi:10.3389/fphar.2023.1102413 [paper, repository]

Predictive signature of static and dynamic functional connectivity for ECT clinical outcomes.

Journal: Frontiers in pharmacology

Authors' code: trendscenter.org/software/gift (no license)

Status: code verified

[38866] doi:10.3389/fsurg.2022.1062451 [paper, data]

A single-arm retrospective study of the clinical efficacy of unilateral biportal endoscopic transforaminal lumbar interbody fusion for lumbar spinal stenosis.

Journal: Frontiers in surgery

Status: data only, 1 dataset cited

[38867] doi:10.3758/s13428-022-02057-2 [paper, repository]

Assessing the reliability of web-based measurements of visual function.

Journal: Behavior research methods

Authors' code: RichardJamesLeadbeater/Web_vs_Lab (no license)

Status: code verified, 18 files readable, 11 matches

[38868] doi:10.7554/elife.76863 [paper, data]

Chloride-dependent mechanisms of multimodal sensory discrimination and nociceptive sensitization in <i>Drosophila</i>.

Journal: eLife

Status: data only, 2 datasets cited

[38869] doi:10.7554/elife.82082 [paper, repository]

Soluble amyloid-β precursor peptide does not regulate GABA_B receptor activity.

Journal: eLife

Authors' code: OSF 8sbg6 (no license)

Status: code verified, 1 file readable, 2 matches

Sunday, 22 January 2023 (4 papers)

[38870] doi:10.1016/j.nicl.2023.103336 [paper, repository]

Atypical cortical processing of bottom-up speech binding cues in children with autism spectrum disorders.

Journal: NeuroImage. Clinical

Authors' code: Kenet-lab (no license)

Status: code verified

[38871] doi:10.1186/s13578-023-00963-2 [paper, data]

AMPK attenuates SHH subgroup medulloblastoma growth and metastasis by inhibiting NF-κB activation.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[38872] doi:10.1186/s40478-023-01513-0 [paper, data]

NAD salvage pathway machinery expression in normal and glaucomatous retina and optic nerve.

Journal: Acta neuropathologica communications

Status: data only, 4 datasets cited

[38873] doi:10.3390/bioengineering10020147 [paper, repository]

A Framework for Susceptibility Analysis of Brain Tumours Based on Uncertain Analytical Cum Algorithmic Modeling.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: Zenodo 7135413 (CC-BY-4.0)

Status: empty repository

Saturday, 21 January 2023 (5 papers)

[38874] doi:10.1038/s41531-023-00446-8 [paper, repository]

Systems level analysis of sex-dependent gene expression changes in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: gitlab.lcsb.uni.lu/bds/geneder/geneder_core (no license)

Status: dead link

[38875] doi:10.1038/s41598-023-27782-2 [paper, data]

Codon modification of Tuba1a alters mRNA levels and causes a severe neurodevelopmental phenotype in mice.

Journal: Scientific reports

Status: data only, 3 datasets cited

[38876] doi:10.1111/cpr.13376 [paper]

Comprehensive analysis of pyroptosis-related gene signatures for glioblastoma immune microenvironment and target therapy.

Journal: Cell proliferation

Status: data only

[38877] doi:10.1117/1.nph.10.1.015001 [paper, data]

Chronic multiscale resolution of mouse brain networks using combined mesoscale cortical imaging and subcortical fiber photometry.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[38878] doi:10.1186/s13195-022-01159-5 [paper, data]

Convergent transcriptomic and genomic evidence supporting a dysregulation of CXCL16 and CCL5 in Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 3 datasets cited

Friday, 20 January 2023 (33 papers)

[38879] doi:10.1002/hbm.26208 [paper, repository]

Disentangling poststroke cognitive deficits and their neuroanatomical correlates through combined multivariable and multioutcome lesion-symptom mapping.

Journal: Human brain mapping

Authors' code: hasnainmamdani/stroke-impairment-inference-lsm-cca (no license)

Status: code verified, 3 files readable, 2 matches

[38880] doi:10.1002/hbm.26213 [paper, repository]

Evaluate the efficacy and reliability of functional gradients in within-subject designs.

Journal: Human brain mapping

Authors' code: XlZha/Gradients_HBM (no license)

Status: code verified, 2 files readable

[38881] doi:10.1007/s10484-023-09579-1 [paper, data]

Changes in Medial Prefrontal Cortex Mediate Effects of Heart Rate Variability Biofeedback on Positive Emotional Memory Biases.

Journal: Applied psychophysiology and biofeedback

Status: data only, 2 datasets cited

[38882] doi:10.1007/s11071-022-08204-w [paper]

A multiscale modeling framework to study the interdependence of brain, behavior, and pandemic.

Journal: Nonlinear dynamics

Status: code on request

[38883] doi:10.1016/j.celrep.2023.112012 [paper]

TRIM28 secures skeletal stem cell fate during skeletogenesis by silencing neural gene expression and repressing GREM1/AKT/mTOR signaling axis.

Journal: Cell reports

Status: code on request

[38884] doi:10.1016/j.isci.2023.106017 [paper, repository]

Do we really measure what we think we are measuring?

Journal: iScience

Authors' code: dgl59311/stats_eegfeatures (no license)

Status: code verified, 43 files readable, 33 matches

[38885] doi:10.1016/j.neuroimage.2023.119871 [paper]

Modeling brain dynamics and gaze behavior: Starting point bias and drift rate relate to frontal midline theta oscillations.

Journal: NeuroImage

Status: code on request

[38886] doi:10.1016/j.neuron.2022.12.030 [paper, repository]

Causal role of a neural system for separating and selecting multidimensional social cognitive information.

Journal: Neuron

Authors' code: figshare 21510831 (CC-BY-4.0)

Status: code verified, 3 files readable

[38887] doi:10.1016/j.xpro.2023.102048 [paper, repository]

Protocol for using serial two-photon tomography to map cell types and cerebrovasculature at single-cell resolution in the whole adult mouse brain.

Journal: STAR protocols

Authors' code: Zenodo 6517732 (other-open), yongsookimlab/TracibleTissueCyteStitching (no license), yongsookimlab/MiceBrainVasculatureTracer (no license), yongsookimlab/Multi_resolution_DLNN_Cell_Counting (no license), download.brainimagelibrary.org/82/0a (no license), yongsookimlab (no license)

Status: code verified, 243 files readable, 25 matches

[38888] doi:10.1021/acschemneuro.2c00611 [paper, data]

Phosphorylation of Tau R2 Repeat Destabilizes Its Binding to Microtubules: A Molecular Dynamics Simulation Study.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[38889] doi:10.1038/s41467-022-35724-1 [paper, repository]

Integrative genetic analysis illuminates ALS heritability and identifies risk genes.

Journal: Nature communications

Authors' code: SalimMegat/NUP50-role-in-ALS (no license)

Status: code verified, 8 files readable, 4 matches

[38890] doi:10.1038/s41597-023-01941-6 [paper, repository]

Deep phenotyping and genomic data from a nationally representative study on dementia in India.

Journal: Scientific data

Authors' code: g2aging.org (no license)

Status: code verified

[38891] doi:10.1038/s41598-022-26093-2 [paper, repository]

Exercising is good for the brain but exercising outside is potentially better.

Journal: Scientific reports

Authors' code: Neuro-Tools (no license)

Status: code verified

[38892] doi:10.1073/pnas.2212252120 [paper, repository]

Confidence of probabilistic predictions modulates the cortical response to pain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7509927 (MIT), dmulders/pain_tsl_eeg (MIT)

Status: code verified, 322 files readable, 17 matches

[38893] doi:10.1080/15548627.2023.2165313 [paper, repository]

Microglial phagocytosis dysfunction in stroke is driven by energy depletion and induction of autophagy.

Journal: Autophagy

Authors' code: SoriaFN/Tools (MIT)

Status: empty repository, 2 files readable

[38894] doi:10.1126/sciadv.add2498 [paper, data]

Contextual drive of neuronal responses in mouse V1 in the absence of feedforward input.

Journal: Science advances

Status: data only, 2 datasets cited

[38895] doi:10.1159/000529072 [paper, data]

The Epidemiology of Moderate and Severe Traumatic Brain Injury in Central Norway.

Journal: Neuroepidemiology

Status: data only, 1 dataset cited

[38896] doi:10.1186/s40478-022-01500-x [paper, data]

Cerebellar granule neurons induce Cyclin D1 before the onset of motor symptoms in Huntington's disease mice.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[38897] doi:10.1371/journal.pone.0280580 [paper, data]

The effect of damage to the white matter network and premorbid intellectual ability on postoperative verbal short-term memory and functional outcome in patients with brain lesions.

Journal: PloS one

Status: data only, 1 dataset cited

[38898] doi:10.1590/0074-02760220184 [paper, data]

Intravenous whole blood transfusion results in faster recovery of vascular integrity and increased survival in experimental cerebral malaria.

Journal: Memorias do Instituto Oswaldo Cruz

Status: data only, 1 dataset cited

[38899] doi:10.3389/fnbot.2022.1075647 [paper, repository]

Toward robust and scalable deep spiking reinforcement learning.

Journal: Frontiers in neurorobotics

Authors' code: mahmoudakl/dsrl (no license)

Status: code verified, 20 files readable, 7 matches

[38900] doi:10.3389/fncel.2023.1087335 [paper, data]

The SIK1/CRTC2/CREB1 and TWIST1/PI3K/Akt/GSK3β signaling pathways mediated by microRNA-25-3p are altered in the schizophrenic rat brain.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[38901] doi:10.3389/fneur.2022.1063598 [paper, repository]

The amyloid imaging for the prevention of Alzheimer's disease consortium: A European collaboration with global impact.

Journal: Frontiers in neurology

Authors' code: luislorenzini/ExploreQC (no license), JJiao/NiftyPAD (Apache-2.0)

Status: code verified, 37 files readable, 2 matches

[38902] doi:10.3389/fnhum.2022.1001171 [paper, repository]

Dataset size considerations for robust acoustic and phonetic speech encoding models in EEG.

Journal: Frontiers in human neuroscience

Authors' code: HamiltonLabUT/dataset-size-considerations (no license)

Status: code verified, 15 files readable, 3 matches

[38903] doi:10.3389/fnmol.2022.1105278 [paper, data]

Characterizing microRNA editing and mutation sites in Autism Spectrum Disorder.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[38904] doi:10.3389/fnmol.2023.1073723 [paper]

T-cell infiltration in the central nervous system and their association with brain calcification in <i>Slc20a2</i>-deficient mice.

Journal: Frontiers in molecular neuroscience

Status: data only

[38905] doi:10.3390/biomedicines11020289 [paper, data]

Molecular Abnormalities in BTBR Mice and Their Relevance to Schizophrenia and Autism Spectrum Disorders: An Overview of Transcriptomic and Proteomic Studies.

Journal: Biomedicines

Status: data only, 1 dataset cited

[38906] doi:10.3390/ijms24032080 [paper, data]

Kappa Opioid Receptors Reduce Serotonin Uptake and Escitalopram Efficacy in the Mouse Substantia Nigra Pars Reticulata.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38907] doi:10.3390/ijms24032111 [paper, data]

Natural Killer Cell-Based Immunotherapy against Glioblastoma.

Journal: International journal of molecular sciences

Status: data only, 3 datasets cited

[38908] doi:10.3390/jpm13020188 [paper, data]

Tumor Microenvironment and Genes Affecting the Prognosis of Temozolomide-Treated Glioblastoma.

Journal: Journal of personalized medicine

Status: data only, 1 dataset cited

[38909] doi:10.3758/s13415-022-01055-3 [paper, repository]

Attentional modulation as a mechanism for enhanced facial emotion discrimination: The case of action video game players.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF y2w6u (no license)

Status: empty repository

[38910] doi:10.7554/elife.84262 [paper, repository]

Multimodal mapping of cell types and projections in the central nucleus of the amygdala.

Journal: eLife

Authors' code: JaneliaSciComp/multifish (BSD-3-Clause), gfleishman/bigstream (BSD-3-Clause)

Status: code verified, 89 files readable, 2 matches

[38911] doi: [paper, repository]

Pattern recognition of omicron variants from amalgamated multi-focus EEG signals and X-ray images using deep transfer learning

Journal: Egyptian Informatics Journal

Authors' code: kaggle.com/tawsifurrahman/covid19-radiography-database (no license)

Status: dead link

Thursday, 19 January 2023 (24 papers)

[38912] doi:10.1002/mpr.1959 [paper, repository]

Harmonizing bifactor models of psychopathology between distinct assessment instruments: Reliability, measurement invariance, and authenticity.

Journal: International journal of methods in psychiatric research

Authors' code: OSF bg7zq (no license), OSF uwy5n (no license)

Status: code verified, 3 files readable, 5 matches

[38913] doi:10.1007/s00259-022-06103-1 [paper, repository]

[¹⁸F]F13640: a selective agonist PET radiopharmaceutical for imaging functional 5-HT_1A receptors in humans.

Journal: European journal of nuclear medicine and molecular imaging

Authors' code: gitlab.utu.fi/vesoik/tpcclib (GPL-3.0)

Status: code verified, 1,277 files readable, 3 matches

[38914] doi:10.1016/j.cell.2022.12.035 [paper, data]

All-optical physiology resolves a synaptic basis for behavioral timescale plasticity.

Journal: Cell

Status: code on request, 1 dataset cited

[38915] doi:10.1016/j.celrep.2023.112006 [paper, repository]

Distinctive synaptic structural motifs link excitatory retinal interneurons to diverse postsynaptic partner types.

Journal: Cell reports

Authors' code: Zenodo 3234870 (other-open), connectomes/vikingplot (GPL-3.0)

Status: code verified, 170 files readable

[38916] doi:10.1016/j.xpro.2022.101986 [paper]

Protocol to study presynaptic protein synthesis in ex vivo mouse hippocampal slices using HaloTag technology.

Journal: STAR protocols

Status: code on request

[38917] doi:10.1073/pnas.2209329120 [paper, data]

Arginine-vasopressin-expressing neurons in the murine suprachiasmatic nucleus exhibit a circadian rhythm in network coherence in vivo.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[38918] doi:10.1186/s13059-023-02846-8 [paper, repository]

Accounting for cis-regulatory constraint prioritizes genes likely to affect species-specific traits.

Journal: Genome biology

Authors' code: Zenodo 7312168 (CC-BY-4.0)

Status: empty repository

[38919] doi:10.1186/s40708-022-00181-5 [paper]

Enhanced brain parcellation via abnormality inpainting for neuroimage-based consciousness evaluation of hydrocephalus patients by lumbar drainage.

Journal: Brain informatics

Status: code on request

[38920] doi:10.1242/jeb.244629 [paper, repository]

Hindlimb muscle spindles inform preparatory forelimb coordination prior to landing in toads.

Journal: The Journal of experimental biology

Authors' code: alex-duman/Duman_and_Azizi_2022 (no license)

Status: code verified, 8 files readable, 7 matches

[38921] doi:10.1371/journal.pcbi.1010808 [paper, repository]

Modelling continual learning in humans with Hebbian context gating and exponentially decaying task signals.

Journal: PLoS computational biology

Authors' code: summerfieldlab/Flesch_Nagy_etal_HebbCL (MIT), summerfieldlab/flesch_etal_2018 (CC-BY-4.0)

Status: code verified, 362 files readable, 8 matches

[38922] doi:10.1371/journal.pcbi.1010861 [paper, repository]

Surround suppression in mouse auditory cortex underlies auditory edge detection.

Journal: PLoS computational biology

Authors' code: MizrahiTeam (no license)

Status: code verified

[38923] doi:10.1371/journal.pone.0279616 [paper, data]

Wheat ergot fungus-derived and modified drug for inhibition of intracranial aneurysm rupture due to dysfunction of TLR-4 receptor in Alzheimer's disease.

Journal: PloS one

Status: data only, 1 dataset cited

[38924] doi:10.3389/fnimg.2022.1031991 [paper, repository]

Estimating and mitigating the effects of systemic low frequency oscillations (sLFO) on resting state networks in awake non-human primates using time lag dependent methodology.

Journal: Frontiers in neuroimaging

Authors' code: bbfrederick/rapidtide (Apache-2.0), bbfrederick/picachooser (Apache-2.0)

Status: code verified, 395 files readable, 5 matches

[38925] doi:10.3389/fninf.2022.1025847 [paper, repository]

Robin's Viewer: Using deep-learning predictions to assist EEG annotation.

Journal: Frontiers in neuroinformatics

Authors' code: RobinWeiler/RV (MIT), plotly/plotly.py (MIT)

Status: code verified, 1,562 files readable, 8 matches

[38926] doi:10.3389/fnins.2022.1031712 [paper, repository]

Prediction of motor function in patients with traumatic brain injury using genetic algorithms modified back propagation neural network: A data-based study.

Journal: Frontiers in neuroscience

Authors' code: swlmed/swlmed-public (no license)

Status: code verified

[38927] doi:10.3389/fnut.2023.1054852 [paper, data]

Quantitative omics analyses of NCOA4 deficiency reveal an integral role of ferritinophagy in iron homeostasis of hippocampal neuronal HT22 cells.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[38928] doi:10.3389/fpsyt.2023.1078779 [paper, repository]

Altered static and dynamic functional connectivity of habenula in first-episode, drug-naïve schizophrenia patients, and their association with symptoms including hallucination and anxiety.

Journal: Frontiers in psychiatry

Authors' code: junqianxulab/Habenula_fMRI_ROIs (no license)

Status: code verified, 10 files readable, 1 match

[38929] doi:10.3390/ijms24032013 [paper, repository]

Closing the Gap between the Auditory Nerve and Cochlear Implant Electrodes: Which Neurotrophin Cocktail Performs Best for Axonal Outgrowth and Is Electrical Stimulation Beneficial?

Journal: International journal of molecular sciences

Authors' code: DominikSchmidbauer/ExplantAnlayzer (no license)

Status: code verified, 9 files readable, 1 match

[38930] doi:10.3390/ijms24032020 [paper, data]

The Tumor Immune Microenvironment in Primary CNS Neoplasms: A Review of Current Knowledge and Therapeutic Approaches.

Journal: International journal of molecular sciences

Status: data only, 3 datasets cited

[38931] doi:10.7554/elife.72951 [paper, repository]

Temporal derivative computation in the dorsal raphe network revealed by an experimentally driven augmented integrate-and-fire modeling framework.

Journal: eLife

Authors' code: pozzorin/GIFFittingToolbox (no license), nauralcodinglab/raphegif (MIT)

Status: code verified, 144 files readable, 10 matches

[38932] doi:10.7554/elife.75703 [paper, data]

A striatal circuit balances learned fear in the presence and absence of sensory cues.

Journal: eLife

Status: data only, 5 datasets cited

[38933] doi:10.7554/elife.81978 [paper, data]

Gasotransmitter modulation of hypoglossal motoneuron activity.

Journal: eLife

Status: data only, 1 dataset cited

[38934] doi:10.7554/elife.82424 [paper, repository]

Position representations of moving objects align with real-time position in the early visual response.

Journal: eLife

Authors' code: OSF jbw9m (no license)

Status: code verified, 78 files readable, 9 matches

[38935] doi:10.7554/elife.84112 [paper, repository]

Tissue libraries enable rapid determination of conditions that preserve antibody labeling in cleared mouse and human tissue.

Journal: eLife

Authors' code: tjzwang/IHC (CC0-1.0), supp:PMC9889093/elife-84112-code3.zip (no license), supp:PMC9889093/elife-84112-code4.zip (no license), supp:PMC9889093/elife-84112-code5.zip (no license)

Status: code verified, 4 files readable

Wednesday, 18 January 2023 (29 papers)

[38936] doi:10.1002/acn3.51731 [paper, repository]

Common pathophysiology for ANXA11 disorders caused by aspartate 40 variants.

Journal: Annals of clinical and translational neurology

Authors' code: broadinstitute.github.io/picard (no license)

Status: code verified

[38937] doi:10.1002/hbm.26188 [paper, repository]

Estimating neural activity from visual areas using functionally defined EEG templates.

Journal: Human brain mapping

Authors' code: aleslab/eegSourceTemplateMatching (GPL-3.0), OSF nj8z3 (no license)

Status: code verified, 34 files readable, 2 matches

[38938] doi:10.1016/j.isci.2023.105998 [paper, data]

Constitutive depletion of brain serotonin differentially affects rats' social and cognitive abilities.

Journal: iScience

Status: data only, 1 dataset cited

[38939] doi:10.1016/j.isci.2023.105999 [paper]

High-throughput submicron-resolution microscopy of <i>Caenorhabditis elegans</i> populations under strong immobilization by cooling cultivation plates.

Journal: iScience

Status: code on request

[38940] doi:10.1016/j.isci.2023.106002 [paper]

Timed exercise stabilizes behavioral rhythms but not molecular programs in the brain's suprachiasmatic clock.

Journal: iScience

Status: data only

[38941] doi:10.1038/s41380-023-01944-0 [paper, repository]

Transcriptional and functional effects of lithium in bipolar disorder iPSC-derived cortical spheroids.

Journal: Molecular psychiatry

Authors' code: Zluglu/CalciumSignalAnalysis (Unlicense)

Status: code verified, 6 files readable

[38942] doi:10.1038/s41586-022-05611-2 [paper, repository]

Spontaneous behaviour is structured by reinforcement without explicit reward.

Journal: Nature

Authors' code: dattalab/dopamine-reinforces-spontaneous-behavior (GPL-3.0)

Status: code verified, 129 files readable, 6 matches

[38943] doi:10.1038/s41586-022-05614-z [paper, repository]

Mesolimbic dopamine adapts the rate of learning from action.

Journal: Nature

Authors' code: neurojak/pySpinCapture (GPL-3.0), dudmanj/RNN_learnDA (MIT)

Status: code verified, 139 files readable, 12 matches

[38944] doi:10.1038/s41598-022-26448-9 [paper, repository]

Artificial intelligence-based locoregional markers of brain peritumoral microenvironment.

Journal: Scientific reports

Authors' code: zrsamani/AI-Based-Locoregional-Markers (no license)

Status: code verified, 5 files readable, 2 matches

[38945] doi:10.1073/pnas.2212227120 [paper, repository]

Propagating spatiotemporal activity patterns across macaque motor cortex carry kinematic information.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hatsopoulos-lab/macaque-spatio_temporal_pattern (MIT)

Status: code verified, 6 files readable, 4 matches

[38946] doi:10.1073/pnas.2212776120 [paper, repository]

Spontaneous cortical dynamics from the first years to the golden years.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: nichrishayes/ArtifactScanTool (GPL-3.0)

Status: code verified, 25 files readable, 1 match

[38947] doi:10.1080/15548627.2023.2167689 [paper, data]

Inhibition of autophagy in microglia and macrophages exacerbates innate immune responses and worsens brain injury outcomes.

Journal: Autophagy

Status: data only, 1 dataset cited

[38948] doi:10.1080/21678421.2023.2167606 [paper, data]

Italian reference values and brain correlates of verbal fluency index - <i>vs</i> standard verbal fluency test - to assess executive dysfunction in ALS.

Journal: Amyotrophic lateral sclerosis & frontotemporal degeneration

Status: data only, 1 dataset cited

[38949] doi:10.1126/sciadv.abq1637 [paper, repository]

Disynaptic specificity of serial information flow for conditioned fear.

Journal: Science advances

Authors' code: nikolaskaralis/OE_Bonsai_network_sync (GPL-3.0)

Status: code verified, 3 files readable

[38950] doi:10.1126/sciadv.abq8566 [paper, repository]

Robust dynamic brain coactivation states estimated in individuals.

Journal: Science advances

Authors' code: fil.ion.ucl.ac.uk/spm/software (no license), doi:10.5061/dryad.kwh70rz76 (no license), Zenodo 7187486 (MIT)

Status: code verified, 2 files readable, 2 matches

[38951] doi:10.1128/jvi.01672-22 [paper, repository]

Therapeutic Trial of anle138b in Mouse Models of Genetic Prion Disease.

Journal: Journal of virology

Authors' code: ericminikel/anle138b (CC-BY-4.0)

Status: code verified, 4 files readable

[38952] doi:10.1162/nol_a_00082 [paper, repository]

Using Motor Tempi to Understand Rhythm and Grammatical Skills in Developmental Language Disorder and Typical Language Development.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF cpeky (no license)

Status: code verified, 1 file readable, 3 matches

[38953] doi:10.1162/nol_a_00084 [paper, repository]

Auditory Word Comprehension Is Less Incremental in Isolated Words.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF u56ea (no license), Zenodo 3564850 (other-open), christianbrodbeck/eelbrain (BSD-3-Clause)

Status: code verified, 522 files readable, 9 matches

[38954] doi:10.1162/nol_a_00086 [paper]

Lexicality-Modulated Influence of Auditory Cortex on Subthalamic Nucleus During Motor Planning for Speech.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: code on request

[38955] doi:10.1177/0271678x231152023 [paper, data]

Neural cortical organoids from self-assembling human iPSC as a model to investigate neurotoxicity in brain ischemia.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: data only, 1 dataset cited

[38956] doi:10.1186/s13024-022-00591-3 [paper]

FUS-ALS hiPSC-derived astrocytes impair human motor units through both gain-of-toxicity and loss-of-support mechanisms.

Journal: Molecular neurodegeneration

Status: code on request

[38957] doi:10.1186/s13041-023-00995-2 [paper, data]

Cell-type-specific translational control of spatial working memory by the cap-binding protein 4EHP.

Journal: Molecular brain

Status: data only, 1 dataset cited

[38958] doi:10.18063/ijb.v9i2.672 [paper, repository]

344Laser bioprinting of human iPSC-derived neural stem cells and neurons: Effect on cell survival, multipotency, differentiation, and neuronal activity.

Journal: International journal of bioprinting

Authors' code: Zenodo 1119026 (MIT)

Status: code verified, 949 files readable, 1 match

[38959] doi:10.3389/fninf.2022.1056068 [paper, repository]

2.5D and 3D segmentation of brain metastases with deep learning on multinational MRI data.

Journal: Frontiers in neuroinformatics

Authors' code: JonOttesen/Met-Seg (no license)

Status: code verified, 46 files readable, 6 matches

[38960] doi:10.3389/fnins.2022.1090045 [paper, repository]

Functional differences in cerebral activation between slow wave-coupled and uncoupled sleep spindles.

Journal: Frontiers in neuroscience

Authors' code: jadesjardins/vised_marks (GPL-2.0), stuartfogel/Period-Amplitude-Analysis (GPL-3.0), stuartfogel/detect_spindles (GPL-3.0)

Status: code verified, 92 files readable, 5 matches

[38961] doi:10.3389/fpsyt.2022.1046821 [paper, repository]

Gender difference in functional activity of 4-months-old infants during sleep: A functional near-infrared spectroscopy study.

Journal: Frontiers in psychiatry

Authors' code: ATQlove/GD-infants-fNIRS (no license)

Status: code verified, 7 files readable, 2 matches

[38962] doi:10.3390/genes14020257 [paper, repository]

Parallel Evolution of Sex-Linked Genes across XX/XY and ZZ/ZW Sex Chromosome Systems in the Frog <i>Glandirana rugosa</i>.

Journal: Genes

Authors' code: ddarriba/modeltest (GPL-3.0), danjeffries/rana-temporaria-genome-assembly (no license)

Status: code verified, 125 files readable, 1 match

[38963] doi:10.3390/ijms24031886 [paper, data]

Optimization and Technical Considerations for the Dye-Exclusion Protocol Used to Assess Blood-Brain Barrier Integrity in Adult <i>Drosophila melanogaster</i>.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[38964] doi:10.7554/elife.82833 [paper, repository]

Differential processing of decision information in subregions of rodent medial prefrontal cortex.

Journal: eLife

Authors' code: OSF s5xqm (no license)

Status: code verified

Tuesday, 17 January 2023 (17 papers, 12 on this page)

[38965] doi:10.1002/hbm.26204 [paper, repository]

Whole-brain functional gradients reveal cortical and subcortical alterations in patients with episodic migraine.

Journal: Human brain mapping

Authors' code: MICA-MNI/BrainStat (BSD-3-Clause), camin-neuro/caminopen (no license)

Status: code verified, 280 files readable, 9 matches

[38966] doi:10.1002/hbm.26206 [paper, repository]

Unravelling neurotransmitters impairment in primary progressive aphasias.

Journal: Human brain mapping

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable, 3 matches

[38967] doi:10.1002/kjm2.12642 [paper, data]

Glycyrrhizic acid protects against temporal lobe epilepsy in young rats by regulating neuronal ferroptosis through the miR-194-5p/PTGS2 axis.

Journal: The Kaohsiung journal of medical sciences

Status: data only, 5 datasets cited

[38968] doi:10.1021/acsomega.2c04581 [paper, repository]

Spatiotemporal Patterning Enabled by Gene Regulatory Networks.

Journal: ACS omega

Authors' code: Divyoj-Singh/Spatial_patterning_GRNs (MIT)

Status: code verified, 137 files readable, 4 matches

[38969] doi:10.1038/s41467-022-35752-x [paper, repository]

Transcriptional vulnerabilities of striatal neurons in human and rodent models of Huntington's disease.

Journal: Nature communications

Authors' code: shmohammadi86/ACTIONet (GPL-2.0)

Status: empty repository, 2 files readable

[38970] doi:10.1038/s41598-023-28158-2 [paper]

Respiratory rhythm affects recalibration of body ownership.

Journal: Scientific reports

Status: code on request

[38971] doi:10.1080/19420889.2022.2163131 [paper, repository]

Biologically-inspired neuronal adaptation improves learning in neural networks.

Journal: Communicative & integrative biology

Authors' code: ykubo82/biochl (MIT), ykubo82/AdpNet (no license)

Status: code verified, 17 files readable, 2 matches

[38972] doi:10.1155/2023/2243928 [paper, data]

The Recurrent-Specific Regulation Network of Prognostic Stemness-Related Signatures in Low-Grade Glioma.

Journal: Disease markers

Status: data only, 1 dataset cited

[38973] doi:10.1155/2023/7850140 [paper, repository]

Complex Emotion Recognition via Facial Expressions with Label Noises Self-Cure Relation Networks.

Journal: Computational intelligence and neuroscience

Authors' code: kaggle.com/c/challenges-in-representation-learning-facial-expression-recognition-challenge (no license)

Status: dead link

[38974] doi:10.1371/journal.pbio.3001968 [paper, repository]

Saccades are locked to the phase of alpha oscillations during natural reading.

Journal: PLoS biology

Authors' code: yalipan666/Saccade-Alpha-phase (no license)

Status: code verified, 15 files readable, 7 matches

[38975] doi:10.1371/journal.pgen.1010562 [paper, repository]

A dedicate sensorimotor circuit enables fine texture discrimination by active touch.

Journal: PLoS genetics

Authors' code: EBGU/Cap2Sip (no license)

Status: code verified, 2 files readable

[38976] doi:10.3389/fnmol.2022.1084633 [paper, repository]

PCSK9 deficiency alters brain lipid composition without affecting brain development and function.

Journal: Frontiers in molecular neuroscience

Authors' code: ELELAB/lipidQ (no license)

Status: code verified, 45 files readable

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