Every paper, by date: page 176

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 176 of 200: 6 January 2023 to 1 January 2023.

Friday, 6 January 2023 (32 papers, 5 on this page)

[39201] doi:10.3390/ph16010081 [paper, repository]

Numerical and Machine Learning Analysis of the Parameters Affecting the Regionally Delivered Nasal Dose of Nano- and Micro-Sized Aerosolized Drugs.

Journal: Pharmaceuticals (Basel, Switzerland)

Authors' code: AFarnoud/respiratory_dose_calculator (no license)

Status: code verified, 1 file readable, 1 match

[39202] doi:10.3390/pharmaceutics15010202 [paper, data]

PPAR Gamma Agonist Leriglitazone Recovers Alterations Due to Pank2-Deficiency in hiPS-Derived Astrocytes.

Journal: Pharmaceutics

Status: data only, 2 datasets cited

[39203] doi:10.3390/s23020655 [paper, data]

Deep Learning-Based Multiclass Brain Tissue Segmentation in Fetal MRIs.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[39204] doi:10.7554/elife.81794 [paper, data]

Spatial frequency representation in V2 and V4 of macaque monkey.

Journal: eLife

Status: data only, 1 dataset cited

[39205] doi:10.7554/elife.81869 [paper, repository]

Multimodal brain age estimates relate to Alzheimer disease biomarkers and cognition in early stages: a cross-sectional observational study.

Journal: eLife

Authors' code: peterrmillar/MultimodalBrainAge (CC0-1.0)

Status: code verified, 7 files readable, 6 matches

Thursday, 5 January 2023 (29 papers)

[39206] doi:10.1016/j.celrep.2022.111943 [paper]

Electrical signals in the ER are cell type and stimulus specific with extreme spatial compartmentalization in neurons.

Journal: Cell reports

Status: code on request

[39207] doi:10.1016/j.isci.2022.105830 [paper, repository]

Serotonergic neurons control cortical neuronal intracellular energy dynamics by modulating astrocyte-neuron lactate shuttle.

Journal: iScience

Authors' code: supp:PMC9881222/mmc2.zip (no license)

Status: code verified, 5 files readable, 3 matches

[39208] doi:10.1016/j.neuroimage.2023.119864 [paper, repository]

Normative models for neuroimaging markers: Impact of model selection, sample size and evaluation criteria.

Journal: NeuroImage

Authors' code: jelenabozek/NormativeModelling (no license)

Status: code verified, 6 files readable, 1 match

[39209] doi:10.1016/j.neuroimage.2023.119867 [paper, repository]

Whose emotion is it? Perspective matters to understand brain-body interactions in emotions.

Journal: NeuroImage

Authors' code: OSF 4eu9n (no license)

Status: code verified, 14 files readable, 2 matches

[39210] doi:10.1016/j.nicl.2023.103314 [paper, repository]

High (130 Hz)- and mid (60 Hz)-frequency deep brain stimulation in the subthalamic nucleus differentially modulate response inhibition: A preliminary combined EEG and eye tracking study.

Journal: NeuroImage. Clinical

Authors' code: JoWld/PD_DBS_Antisac (no license)

Status: code verified, 20 files readable, 7 matches

[39211] doi:10.1016/j.xpro.2022.101997 [paper]

Expansion microscopy of the chick embryo neural tube to overcome molecular crowding at the centrosomes-cilia.

Journal: STAR protocols

Status: code on request

[39212] doi:10.1038/s41467-022-35764-7 [paper, repository]

Functional geometry of the cortex encodes dimensions of consciousness.

Journal: Nature communications

Authors' code: Zenodo 6955280 (CC-BY-4.0)

Status: code verified

[39213] doi:10.1038/s41597-022-01925-y [paper, repository]

Single-nucleus profiling of adult mice sub-ventricular zone after blast-related traumatic brain injury.

Journal: Scientific data

Authors' code: figshare 20174240 (GPL), figshare 20174261 (GPL), s-andrews/FastQC (GPL-3.0), 10XGenomics/cellranger (MIT)

Status: code verified, 951 files readable, 3 matches

[39214] doi:10.1038/s41598-022-27188-6 [paper, repository]

Third-order motifs are sufficient to fully and uniquely characterize spatiotemporal neural network activity.

Journal: Scientific reports

Authors' code: grahamas/RasterUniqueCharacterizationCode (Apache-2.0)

Status: code verified, 77 files readable, 1 match

[39215] doi:10.1038/s41598-022-27298-1 [paper, data]

External validation of binary machine learning models for pain intensity perception classification from EEG in healthy individuals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39216] doi:10.1038/s41598-022-27350-0 [paper, repository]

Automatic segmentation of trabecular and cortical compartments in HR-pQCT images using an embedding-predicting U-Net and morphological post-processing.

Journal: Scientific reports

Authors' code: Bonelab/HR-pQCT-Segmentation (GPL-3.0)

Status: code verified, 39 files readable, 22 matches

[39217] doi:10.1038/s41598-023-27420-x [paper, repository]

Single-cell-led drug repurposing for Alzheimer's disease.

Journal: Scientific reports

Authors' code: cosbi.eu/fx/2093489320 (no license)

Status: dead link

[39218] doi:10.1073/pnas.2217111120 [paper, repository]

Similar evolutionary trajectories in an environmental <i>Cryptococcus neoformans</i> isolate after human and murine infection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: broadinstitute/fungal-wdl (BSD-3-Clause)

Status: code verified, 3 files readable

[39219] doi:10.1128/aac.01188-22 [paper, repository]

Pharmacological Profiling of a Brugia malayi Muscarinic Acetylcholine Receptor as a Putative Antiparasitic Target.

Journal: Antimicrobial agents and chemotherapy

Authors' code: zamanianlab/Bm-GAR-ms (no license)

Status: code verified, 7 files readable, 2 matches

[39220] doi:10.1159/000528911 [paper, data]

Microglial Characterization in Transient Human Neurodevelopmental Structures.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[39221] doi:10.1371/journal.pbio.3001958 [paper, repository]

Dorsal root ganglia control nociceptive input to the central nervous system.

Journal: PLoS biology

Authors' code: archive.researchdata.leeds.ac.uk/1042 (no license), dbjaffe67/DRGsims (no license), pnm4sfix/SpikePropagation (no license)

Status: code verified, 16 files readable, 4 matches

[39222] doi:10.1371/journal.pcbi.1010058 [paper, repository]

Mapping of morpho-electric features to molecular identity of cortical inhibitory neurons.

Journal: PLoS computational biology

Authors' code: BlueBrain/me-features-to-mo-ID-mapping (Apache-2.0)

Status: code verified, 11 files readable, 8 matches

[39223] doi:10.1371/journal.ppat.1011070 [paper, repository]

Nuclear accumulation of host transcripts during Zika Virus Infection.

Journal: PLoS pathogens

Authors' code: changlab/fast-iclip (GPL-2.0)

Status: code verified, 26 files readable, 1 match

[39224] doi:10.1523/jneurosci.1426-22.2022 [paper, repository]

Reversible Inactivation of Ferret Auditory Cortex Impairs Spatial and Nonspatial Hearing.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: stephentown42/cooling_auditory_cortex (GPL-3.0)

Status: code verified, 104 files readable, 12 matches

[39225] doi:10.1523/jneurosci.1516-22.2022 [paper, repository]

A Novel and Functionally Diverse Class of Acetylcholine-Gated Ion Channels.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: hiris25/Worm-Connectome-Polarity (no license), hiris25/TEVC-analysis-scripts (no license)

Status: code verified, 13 files readable, 1 match

[39226] doi:10.15252/emmm.202216111 [paper]

Synaptogenic gene therapy with FGF22 improves circuit plasticity and functional recovery following spinal cord injury.

Journal: EMBO molecular medicine

Status: code on request

[39227] doi:10.26508/lsa.202201457 [paper, data]

SMN promotes mitochondrial metabolic maturation during myogenesis by regulating the MYOD-miRNA axis.

Journal: Life science alliance

Status: data only, 1 dataset cited

[39228] doi:10.3389/fcell.2022.1023340 [paper, repository]

Differentiation of human induced pluripotent stem cells into cortical neural stem cells.

Journal: Frontiers in cell and developmental biology

Authors' code: wtsi-hgi/nextflow-pipelines (no license)

Status: code verified, 42 files readable, 1 match

[39229] doi:10.3389/fendo.2022.1073759 [paper, data]

Ontogeny of ependymoglial cells lining the third ventricle in mice.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[39230] doi:10.3389/fnmol.2022.1068019 [paper, repository]

Poly(I:C)-exposed zebrafish shows autism-like behaviors which are ameliorated by <i>fabp2</i> gene knockout.

Journal: Frontiers in molecular neuroscience

Authors' code: BGI-flexlab/SOAPnuke (GPL-3.0), deweylab/RSEM (GPL-3.0)

Status: code verified, 421 files readable

[39231] doi:10.3390/biom13010109 [paper, data]

Identification and Characterization of <i>Hdh-FMRF2</i> Gene in Pacific Abalone and Its Possible Role in Reproduction and Larva Development.

Journal: Biomolecules

Status: data only, 1 dataset cited

[39232] doi:10.3390/cells12020227 [paper, data]

Loss of the Immunomodulatory Transcription Factor BATF2 in Humans Is Associated with a Neurological Phenotype.

Journal: Cells

Status: data only, 1 dataset cited

[39233] doi:10.3390/s23020610 [paper, data]

Anxious Brains: A Combined Data Fusion Machine Learning Approach to Predict Trait Anxiety from Morphometric Features.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[39234] doi:10.3390/v15010168 [paper]

ERVWE1 Reduces Hippocampal Neuron Density and Impairs Dendritic Spine Morphology through Inhibiting Wnt/JNK Non-Canonical Pathway via miR-141-3p in Schizophrenia.

Journal: Viruses

Status: data only

Wednesday, 4 January 2023 (42 papers)

[39235] doi:10.1016/j.celrep.2022.111946 [paper]

Excitation-inhibition imbalance disrupts visual familiarity in amyloid and non-pathology conditions.

Journal: Cell reports

Status: code on request

[39236] doi:10.1016/j.celrep.2022.111962 [paper, repository]

Lateral entorhinal cortex inputs modulate hippocampal dendritic excitability by recruiting a local disinhibitory microcircuit.

Journal: Cell reports

Authors' code: modeldb:267221 (no license), Zenodo 7413215 (other-open), poirazi-lab/bilash_et_al_2022 (GPL-2.0)

Status: code verified, 110 files readable, 6 matches

[39237] doi:10.1016/j.dcn.2022.101195 [paper]

Sex and age variations in the impact of puberty on cortical thickness and associations with internalizing symptoms and suicidal ideation in early adolescence.

Journal: Developmental cognitive neuroscience

Status: code on request

[39238] doi:10.1016/j.heliyon.2022.e12675 [paper, repository]

A multimodal imaging-guided software for access to primate brains.

Journal: Heliyon

Authors' code: BCoLab/pyRecAid (no license)

Status: code verified, 12 files readable, 2 matches

[39239] doi:10.1016/j.isci.2023.105925 [paper, repository]

Altered transcriptome-proteome coupling indicates aberrant proteostasis in Parkinson's disease.

Journal: iScience

Authors' code: COMBINE-lab/salmon (BSD-3-Clause), ctlab/fgsea (MIT), fifdick/alt_rna_prot_coupling_PD (no license), Zenodo 7357345 (CC-BY-4.0)

Status: code verified, 158 files readable, 11 matches

[39240] doi:10.1016/j.nicl.2023.103316 [paper, repository]

Cerebellar gray matter alterations predict deep brain stimulation outcomes in Meige syndrome.

Journal: NeuroImage. Clinical

Authors' code: diedrichsenlab.org/imaging/suit_faqs.htm (no license)

Status: code verified

[39241] doi:10.1016/j.ynirp.2022.100155 [paper, data]

Aerobic exercise is associated with region-specific changes in volumetric, tensor-based, and fixel-based measures of white matter integrity in healthy older adults.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[39242] doi:10.1016/j.ynstr.2023.100514 [paper, repository]

Transcriptional and cell type profiles of cortical brain regions showing ultradian cortisol rhythm dependent responses to emotional face stimulation.

Journal: Neurobiology of stress

Authors' code: BMHLab/AHBAprocessing (no license), pchabets/fMRI-transcriptomics-cortisol (MIT)

Status: code verified, 401 files readable, 22 matches

[39243] doi:10.1038/s41417-022-00582-y [paper]

Single-cell RNA sequencing reveals changes in glioma-associated macrophage polarization and cellular states of malignant gliomas with high AQP4 expression.

Journal: Cancer gene therapy

Status: data only

[39244] doi:10.1038/s41467-022-35658-8 [paper, repository]

Cerebro-cerebellar networks facilitate learning through feedback decoupling.

Journal: Nature communications

Authors' code: yunjey/pytorch-tutorial (MIT), koz4k/dni-pytorch (MIT), neuralml/ccDNI (no license), machenslab/dPCA (MIT)

Status: code verified, 97 files readable, 6 matches

[39245] doi:10.1038/s41586-022-05562-8 [paper, repository]

Synaptic gradients transform object location to action.

Journal: Nature

Authors' code: neuprint.janelia.org (no license), avaccari/DrosophilaVPNWiring (GPL-3.0), Zenodo 6366082 (GPL-2.0), artxz/LC4_code (GPL-3.0), Zenodo 7651847 (no license), Zenodo 7651848 (no license), kristinbranson/apt (GPL-3.0)

Status: code verified, 2,119 files readable, 2 matches

[39246] doi:10.1038/s41598-022-26055-8 [paper, data]

Social feedback enhances learning in Williams syndrome.

Journal: Scientific reports

Status: data only, 5 datasets cited

[39247] doi:10.1038/s41598-023-27385-x [paper, repository]

Association between different sensory modalities based on concurrent time series data obtained by a collaborative reservoir computing model.

Journal: Scientific reports

Authors' code: Zenodo 5835322 (CC-BY-4.0)

Status: code verified, 6 files readable

[39248] doi:10.1073/pnas.2122467120 [paper, repository]

Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Vogel-lab/Integrative-multi-omics-analyses-of-FOXG1-functions (no license), Vogel-lab/Integrative-multiomics-analyses-of-FOXG1-functions (no license)

Status: code verified, 3 files readable

[39249] doi:10.1073/pnas.2123182120 [paper, repository]

Rapid synaptic and gamma rhythm signature of mouse critical period plasticity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mmccart/Quast-et-al-C--code (no license)

Status: empty repository, 1 file readable

[39250] doi:10.1073/pnas.2212120120 [paper, repository]

Transformation of acoustic information to sensory decision variables in the parietal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: dstolz/epsych (GPL-3.0), nyu.box.com/v/yao-zemlianova-et-al-2022 (no license)

Status: code verified, 836 files readable, 4 matches

[39251] doi:10.1073/pnas.2213418120 [paper, data]

Re-formation of synaptic connectivity in dissociated human stem cell-derived retinal organoid cultures.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[39252] doi:10.1098/rsos.220645 [paper, repository]

On the identification of hypoxic regions in subject-specific cerebral vasculature by combined CFD/MRI.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6350207 (no license)

Status: code found, still to be checked

[39253] doi:10.1128/msystems.00608-22 [paper, data]

Unique Features of the Gut Microbiome Characterized in Animal Models of Angelman Syndrome.

Journal: mSystems

Status: data only, 1 dataset cited

[39254] doi:10.1186/s12864-022-09101-7 [paper, data]

Identification of biomarkers and therapeutic targets related to Sepsis-associated encephalopathy in rats by quantitative proteomics.

Journal: BMC genomics

Status: data only, 8 datasets cited

[39255] doi:10.1186/s12915-022-01498-7 [paper, data]

Increased interaction between endoplasmic reticulum and mitochondria following sleep deprivation.

Journal: BMC biology

Status: data only, 6 datasets cited

[39256] doi:10.1186/s13148-022-01394-5 [paper, data]

Methylation in MAD1L1 is associated with the severity of suicide attempt and phenotypes of depression.

Journal: Clinical epigenetics

Status: data only, 8 datasets cited

[39257] doi:10.1186/s13578-022-00938-9 [paper, repository]

Single-cell DNA methylation sequencing by combinatorial indexing and enzymatic DNA methylation conversion.

Journal: Cell & bioscience

Authors' code: zchatt/sciem_scripts (no license)

Status: code verified, 30 files readable, 8 matches

[39258] doi:10.1523/eneuro.0102-22.2022 [paper, repository]

Automated Image Analysis Reveals Different Localization of Synaptic Gephyrin C4 Splice Variants.

Journal: eNeuro

Authors' code: FilLieb/quantitative_synapse_analysis (MIT)

Status: empty repository, 2 files readable

[39259] doi:10.3389/fendo.2022.1047642 [paper]

Autophagy and senescence of rat retinal precursor cells under high glucose.

Journal: Frontiers in endocrinology

Status: data only

[39260] doi:10.3389/fgene.2022.996180 [paper]

Comprehensive pan-cancer analysis and the regulatory mechanism of AURKA, a gene associated with prognosis of ferroptosis of adrenal cortical carcinoma in the tumor micro-environment.

Journal: Frontiers in genetics

Status: data only

[39261] doi:10.3389/fimmu.2022.1052692 [paper, data]

PROS1 shapes the immune-suppressive tumor microenvironment and predicts poor prognosis in glioma.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[39262] doi:10.3389/fimmu.2022.993444 [paper, data]

Glioma-derived CCL2 and CCL7 mediate migration of immune suppressive CCR2⁺/CX3CR1⁺ M-MDSCs into the tumor microenvironment in a redundant manner.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[39263] doi:10.3389/fnagi.2022.1063721 [paper, repository]

Health-related heterogeneity in brain aging and associations with longitudinal change in cognitive function.

Journal: Frontiers in aging neuroscience

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable, 1 match

[39264] doi:10.3389/fncel.2022.1045647 [paper, data]

Comprehensive expression analysis with cell-type-specific transcriptome in ALS-linked mutant SOD1 mice: Revisiting the active role of glial cells in disease.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[39265] doi:10.3389/fncel.2022.1060189 [paper, data]

Neurotransmitter content heterogeneity within an interneuron class shapes inhibitory transmission at a central synapse.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[39266] doi:10.3389/fnins.2022.1011895 [paper, repository]

Restoring morphology of light sheet microscopy data based on magnetic resonance histology.

Journal: Frontiers in neuroscience

Authors' code: google/neuroglancer (Apache-2.0)

Status: code verified, 912 files readable

[39267] doi:10.3389/fnins.2022.1051424 [paper, repository]

Sources of residual autocorrelation in multiband task fMRI and strategies for effective mitigation.

Journal: Frontiers in neuroscience

Authors' code: Inria-Visages/Anima-Public (AGPL-3.0)

Status: code verified, 271 files readable, 1 match

[39268] doi:10.3389/fnins.2022.1075288 [paper, data]

The Temporal Voice Areas are not "just" Speech Areas.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[39269] doi:10.3389/fnins.2022.1079078 [paper, repository]

Targeting the pathological network: Feasibility of network-based optimization of transcranial magnetic stimulation coil placement for treatment of psychiatric disorders.

Journal: Frontiers in neuroscience

Authors' code: Michaelcao92/NetworkTargetingVisualization (no license)

Status: code verified, 2 files readable

[39270] doi:10.3389/fphar.2022.1060954 [paper, data]

Necroptotic kinases are involved in the reduction of depression-induced astrocytes and fluoxetine's inhibitory effects on necroptotic kinases.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[39271] doi:10.3389/fpsyt.2022.988893 [paper, repository]

Behavioral, cortical and autonomic effects of single-dose escitalopram on the induction and regulation of fear and disgust: Comparison with single-session psychological emotion regulation with reappraisal.

Journal: Frontiers in psychiatry

Authors' code: mateusjoffily/eda (GPL-3.0)

Status: code verified, 18 files readable, 2 matches

[39272] doi:10.3390/antiox12010124 [paper, data]

Reduced <i>Ribose-5-Phosphate Isomerase A-1</i> Expression in Specific Neurons and Time Points Promotes Longevity in <i>Caenorhabditis elegans</i>.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

[39273] doi:10.3390/diseases11010009 [paper, repository]

Transcriptome Analysis Revealed Potential Neuro-Immune Interaction in Papillary Thyroid Carcinoma Tissues.

Journal: Diseases (Basel, Switzerland)

Authors' code: maayanlab/enrichr-viz-appyter (no license)

Status: code verified, 15 files readable, 2 matches

[39274] doi:10.3390/ijms24020916 [paper, data]

Leukocyte Telomere Length Predicts Severe Disability in Relapsing-Remitting Multiple Sclerosis and Correlates with Mitochondrial DNA Copy Number.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39275] doi:10.3390/molecules28020507 [paper, data]

Osthole Antagonizes Microglial Activation in an NRF2-Dependent Manner.

Journal: Molecules (Basel, Switzerland)

Status: data only, 1 dataset cited

[39276] doi:10.7554/elife.82978 [paper, data]

Single-cell transcriptomic profiling of the zebrafish inner ear reveals molecularly distinct hair cell and supporting cell subtypes.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 3 January 2023 (24 papers)

[39277] doi:10.1002/bit.28313 [paper, data]

αCT1 peptide sensitizes glioma cells to temozolomide in a glioblastoma organoid platform.

Journal: Biotechnology and bioengineering

Status: data only, 2 datasets cited

[39278] doi:10.1007/s11060-022-04205-2 [paper, data]

SARS-CoV2 entry factors are expressed in primary human glioblastoma and recapitulated in cerebral organoid models.

Journal: Journal of neuro-oncology

Status: data only, 1 dataset cited

[39279] doi:10.1016/j.neo.2022.100859 [paper]

Pioneering models of pediatric brain tumors.

Journal: Neoplasia (New York, N.Y.)

Status: data only

[39280] doi:10.1016/j.xpro.2022.101968 [paper, repository]

An optimized iDISCO+ protocol for tissue clearing and 3D analysis of oxytocin and vasopressin cell network in the developing mouse brain.

Journal: STAR protocols

Authors' code: OSF w5xra (no license), OSF 39thq (no license)

Status: code verified, 57 files readable

[39281] doi:10.1038/s41398-022-02301-5 [paper, repository]

Neuroanatomical correlates of genetic risk for obesity in children.

Journal: Translational psychiatry

Authors' code: FilipMorys/OBPRS (no license)

Status: code verified, 4 files readable, 1 match

[39282] doi:10.1038/s41467-022-35574-x [paper, repository]

Single-cell transcriptomic analysis reveals diversity within mammalian spinal motor neurons.

Journal: Nature communications

Authors' code: sqjin/scRNA-seq-motor-neuron (no license), Zenodo 7374602 (other-open)

Status: code verified, 4 files readable, 6 matches

[39283] doi:10.1038/s41467-022-35708-1 [paper, repository]

Filamin A organizes γ‑aminobutyric acid type B receptors at the plasma membrane.

Journal: Nature communications

Authors' code: CalebiroLab/GABAB_FLNA (no license)

Status: code verified, 1 file readable

[39284] doi:10.1038/s41537-022-00325-w [paper]

Predicting aging trajectories of decline in brain volume, cortical thickness and fractional anisotropy in schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[39285] doi:10.1038/s42003-022-04398-2 [paper, data]

Aβ efflux impairment and inflammation linked to cerebrovascular accumulation of amyloid-forming amylin secreted from pancreas.

Journal: Communications biology

Status: data only, 1 dataset cited

[39286] doi:10.1073/pnas.2201074119 [paper, repository]

Mindful attention promotes control of brain network dynamics for self-regulation and discontinues the past from the present.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF gkahy (no license), ryraut/intrinsic-timescales (no license), dalejn/contemplativeControl (no license), Zenodo 4104748 (other-open), dalejn/cleanbib (MIT)

Status: code verified, 30 files readable, 9 matches

[39287] doi:10.1073/pnas.2205371120 [paper, repository]

Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: neocaleb/NicheSVM (no license), wgzgithub/sp_tSNE (no license)

Status: code verified, 19 files readable, 2 matches

[39288] doi:10.1073/pnas.2207466120 [paper, repository]

Nonquantal transmission at the vestibular hair cell-calyx synapse: K_LV currents modulate fast electrical and slow K⁺ potentials.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: acgsci/vestibularHairCellCalyxNQT (GPL-3.0)

Status: empty repository, 2 files readable

[39289] doi:10.1073/pnas.2208963120 [paper, repository]

Altered integration of excitatory inputs onto the basal dendrites of layer 5 pyramidal neurons in a mouse model of Fragile X syndrome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: apacker83/EphysViewer (no license), modeldb:135787 (no license)

Status: code verified, 27 files readable

[39290] doi:10.1073/pnas.2214634120 [paper, repository]

Anatomically interpretable deep learning of brain age captures domain-specific cognitive impairment.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: irimia-laboratory/USC_BA_estimator (other)

Status: code verified, 8 files readable, 2 matches

[39291] doi:10.1093/braincomms/fcad002 [paper, repository]

Genetic overlap between Parkinson's disease and inflammatory bowel disease.

Journal: Brain communications

Authors' code: zhenin/HDL (no license)

Status: code verified, 40 files readable, 1 match

[39292] doi:10.1101/2023.01.02.522533 [paper, data]

AimSeg: a machine-learning-aided tool for axon, inner tongue and myelin segmentation

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[39293] doi:10.1172/jci163451 [paper, data]

Monocyte-neutrophil entanglement in glioblastoma.

Journal: The Journal of clinical investigation

Status: data only, 2 datasets cited

[39294] doi:10.1186/s12953-022-00199-x [paper, data]

Proteomic Analysis of Protective Effects of Dl-3-n-Butylphthalide against mpp + -Induced Toxicity via downregulating P53 pathway in N2A Cells.

Journal: Proteome science

Status: data only, 3 datasets cited

[39295] doi:10.1523/jneurosci.1450-22.2022 [paper]

Enhanced Reactivation of Remapping Place Cells during Aversive Learning.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: code on request

[39296] doi:10.3390/ijms24010868 [paper, data]

Integrative Proteome Analysis Revels 3-Hydroxybutyrate Exerts Neuroprotective Effect by Influencing Chromatin Bivalency.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39297] doi:10.3390/nu15010244 [paper, repository]

Differential Orbitofrontal Cortex Responses to Chocolate Images While Performing an Approach-Avoidance Task in the MRI Environment.

Journal: Nutrients

Authors' code: OSF ysbrp (no license)

Status: empty repository

[39298] doi:10.3758/s13423-022-02238-2 [paper]

Selection within working memory impairs perceptual detection.

Journal: Psychonomic bulletin & review

Status: code on request

[39299] doi:10.7554/elife.81154 [paper, repository]

The meningeal transcriptional response to traumatic brain injury and aging.

Journal: eLife

Authors' code: danielshapiro1/MeningealTransciptome (no license)

Status: code verified, 5 files readable, 21 matches

[39300] doi:10.7554/elife.81892 [paper, repository]

Antisense oligonucleotide therapy rescues disturbed brain rhythms and sleep in juvenile and adult mouse models of Angelman syndrome.

Journal: eLife

Authors' code: heetkaku/angelman (BSD-3-Clause)

Status: code verified, 22 files readable, 4 matches

Monday, 2 January 2023 (13 papers)

[39301] doi:10.1007/s13755-022-00203-w [paper, data]

BTC-fCNN: Fast Convolution Neural Network for Multi-class Brain Tumor Classification.

Journal: Health information science and systems

Status: data only, 1 dataset cited

[39302] doi:10.1016/j.celrep.2022.111896 [paper, repository]

Efficient generation of lower induced motor neurons by coupling Ngn2 expression with developmental cues.

Journal: Cell reports

Authors' code: duos.broadinstitute.org (no license)

Status: code verified

[39303] doi:10.1016/j.celrep.2022.111914 [paper]

Mechanism of kisspeptin neuron synchronization for pulsatile hormone secretion in male mice.

Journal: Cell reports

Status: code on request

[39304] doi:10.1016/j.mcpro.2022.100491 [paper, repository]

Spatially Resolved Top-Down Proteomics of Tissue Sections Based on a Microfluidic Nanodroplet Sample Preparation Platform.

Journal: Molecular & cellular proteomics : MCP

Authors' code: PNNL-HubMAP-Proteoform-Suite/spatially-resolved-TDP (BSD-2-Clause)

Status: code verified, 4 files readable, 1 match

[39305] doi:10.1016/j.redox.2023.102600 [paper, repository]

Targeting succinate metabolism to decrease brain injury upon mechanical thrombectomy treatment of ischemic stroke.

Journal: Redox biology

Authors' code: ChristinaSchmidt1/Succinate_in_ischemic_stroke (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[39306] doi:10.1038/s41559-022-01925-6 [paper, repository]

De novo genes with an lncRNA origin encode unique human brain developmental functionality.

Journal: Nature ecology & evolution

Authors' code: ZhangJiePKU/DenovoProject (MIT)

Status: code verified, 3 files readable

[39307] doi:10.1038/s41587-022-01546-1 [paper, data]

Magnify is a universal molecular anchoring strategy for expansion microscopy.

Journal: Nature biotechnology

Status: data only, 1 dataset cited

[39308] doi:10.1038/s41587-022-01568-9 [paper, repository]

A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.

Journal: Nature biotechnology

Authors' code: aidenlab/straw (MIT), open2c/polychrom (MIT), b2jia/jie (GPL-3.0)

Status: code verified, 85 files readable, 22 matches

[39309] doi:10.1038/s41587-022-01586-7 [paper, repository]

Recording of cellular physiological histories along optically readable self-assembling protein chains.

Journal: Nature biotechnology

Authors' code: Zenodo 7130256 (CC-BY-4.0)

Status: code verified

[39310] doi:10.1101/2022.12.31.522365 [paper, repository]

Induced Alpha And Beta Electroencephalographic Rhythms Covary With Single-Trial Speech Intelligibility In Competition

Journal: bioRxiv (preprint)

Authors' code: SNAPsoftware/ANLffr (BSD-3-Clause)

Status: code verified, 18 files readable

[39311] doi:10.1117/1.nph.10.1.013508 [paper, repository]

Dual-slope imaging of cerebral hemodynamics with frequency-domain near-infrared spectroscopy.

Journal: Neurophotonics

Authors' code: doit-lab/doit-public (no license)

Status: code verified, 199 files readable, 13 matches

[39312] doi:10.3390/bioengineering10010056 [paper, repository]

Understanding the Role of Connectivity Dynamics of Resting-State Functional MRI in the Diagnosis of Autism Spectrum Disorder: A Comprehensive Study.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: ynakieb/rs-fMRI-paper (no license)

Status: code verified, 5 files readable, 4 matches

[39313] doi:10.3988/jcn.2022.0088 [paper, repository]

Hypoperfusion Precedes Tau Deposition in the Entorhinal Cortex: A Retrospective Evaluation of ADNI-2 Data.

Journal: Journal of clinical neurology (Seoul, Korea)

Authors' code: krishbilimoria/hypoperfusion-tau-deposition (MIT)

Status: code verified, 3 files readable, 1 match

Sunday, 1 January 2023 (170 papers, 111 on this page)

[39314] doi:10.1002/cpz1.654 [paper, repository]

Glia Cell Morphology Analysis Using the Fiji GliaMorph Toolkit.

Journal: Current protocols

Authors' code: ElisabethKugler/GliaMorph (BSD-3-Clause), Zenodo 6328234 (other-open)

Status: code verified, 4 files readable

[39315] doi:10.1002/ctm2.1152 [paper, data]

Faecal metabolite deficit, gut inflammation and diet in Parkinson's disease: Integrative analysis indicates inflammatory response syndrome.

Journal: Clinical and translational medicine

Status: data only, 2 datasets cited

[39316] doi:10.1002/dad2.12396 [paper, data]

Brain atrophy and white matter hyperintensities are independently associated with plasma neurofilament light chain in an Asian cohort of cognitively impaired patients with concomitant cerebral small vessel disease.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: data only, 1 dataset cited

[39317] doi:10.1002/dad2.12405 [paper, repository]

Predicting continuous amyloid PET values with CSF and plasma Aβ42/Aβ40.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable, 2 matches

[39318] doi:10.1002/dad2.12413 [paper, repository]

A practitioner's guide to geospatial analysis in a neuroimaging context.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: jwisch/PractitionersGuideSpatAnalysis (no license)

Status: code verified, 1 file readable, 2 matches

[39319] doi:10.1002/jev2.12297 [paper, data]

Dynamic release of neuronal extracellular vesicles containing miR-21a-5p is induced by hypoxia.

Journal: Journal of extracellular vesicles

Status: data only, 1 dataset cited

[39320] doi:10.1002/jev2.12301 [paper, data]

Cocaine perturbs mitovesicle biology in the brain.

Journal: Journal of extracellular vesicles

Status: data only, 2 datasets cited

[39321] doi:10.1002/trc2.12373 [paper, data]

Altered gene expression in excitatory neurons is associated with Alzheimer's disease and its higher incidence in women.

Journal: Alzheimer's & dementia (New York, N. Y.)

Status: data only, 1 dataset cited

[39322] doi:10.1007/978-1-0716-2887-4_10 [paper, repository]

Live-Imaging Analysis of Epithelial Zippering During Mouse Neural Tube Closure.

Journal: Methods in molecular biology (Clifton, N.J.)

Authors' code: DaleMoulding/Fiji-Macros (MIT)

Status: empty repository, 2 files readable

[39323] doi:10.1007/s12603-023-1982-1 [paper, repository]

Resistance Exercise Program in Cognitively Normal Older Adults: CERT-Based Exercise Protocol of the AGUEDA Randomized Controlled Trial.

Journal: The journal of nutrition, health & aging

Authors' code: aguedaprojectugr/CERT_AGUEDA (no license)

Status: empty repository, 1 file readable

[39324] doi:10.1016/j.cell.2022.12.009 [paper, repository]

Structural and functional map for forelimb movement phases between cortex and medulla.

Journal: Cell

Authors' code: arberlab-wyhk/Yang-et-al-2022 (no license)

Status: code verified, 2 files readable, 10 matches

[39325] doi:10.1016/j.cnsns.2022.106794 [paper, repository]

Homogenisation for the monodomain model in the presence of microscopic fibrotic structures.

Journal: Communications in nonlinear science & numerical simulation

Authors' code: betalawson/fibro-homogenisation (MIT)

Status: code verified, 32 files readable, 11 matches

[39326] doi:10.1016/j.ibmed.2023.100107 [paper, repository]

Automatic generation of operation notes in endoscopic pituitary surgery videos using workflow recognition.

Journal: Intelligence-based medicine

Authors' code: dreets/pitnet-opnotes-public (no license)

Status: dead link

[39327] doi:10.1016/j.neuroimage.2022.119851 [paper, data]

Brainstorm-DUNEuro: An integrated and user-friendly Finite Element Method for modeling electromagnetic brain activity.

Journal: NeuroImage

Status: data only, 1 dataset cited

[39328] doi:10.1016/j.xcrm.2022.100900 [paper, repository]

Immunogenomic analysis of human brain metastases reveals diverse immune landscapes across genetically distinct tumors.

Journal: Cell reports. Medicine

Authors' code: im3sanger/dndscv (GPL-3.0), genome/sciclone (Apache-2.0)

Status: code verified, 25 files readable, 5 matches

[39329] doi:10.1042/bsr20222016 [paper, data]

The relationship between miRNA-210 and SCN1B in fetal rats with hypoxic-ischemic brain injury.

Journal: Bioscience reports

Status: data only, 14 datasets cited

[39330] doi:10.1055/s-0042-1758457 [paper, data]

The clinical-radiological paradox in multiple sclerosis: myth or truth?

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[39331] doi:10.1080/07853890.2023.2251145 [paper, data]

Low intensity focused ultrasound: a new prospect for the treatment of Parkinson's disease.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[39332] doi:10.1080/15476286.2023.2198805 [paper, data]

L1CAM immunocapture generates a unique extracellular vesicle population with a reproducible miRNA fingerprint.

Journal: RNA biology

Status: data only, 1 dataset cited

[39333] doi:10.1080/15476286.2023.2220210 [paper, data]

Hybrid-seq deciphers the complex transcriptional profile of the human <i>BRCA1</i> DNA repair associated gene.

Journal: RNA biology

Status: data only, 1 dataset cited

[39334] doi:10.1080/15476286.2023.2221511 [paper, repository]

The paralogues MAGOH and MAGOHB are oncogenic factors in high-grade gliomas and safeguard the splicing of cell division and cell cycle genes.

Journal: RNA biology

Authors' code: galantelab/MAGOHMAGOHB (GPL-3.0)

Status: code verified, 13 files readable, 3 matches

[39335] doi:10.1080/15476286.2023.2242650 [paper, data]

Cup is essential for <i>oskar</i> mRNA translational repression during early <i>Drosophila</i> oogenesis.

Journal: RNA biology

Status: data only, 1 dataset cited

[39336] doi:10.1080/19490976.2022.2162306 [paper, repository]

The gut-microbiota-brain axis in a Spanish population in the aftermath of the COVID-19 pandemic: microbiota composition linked to anxiety, trauma, and depression profiles.

Journal: Gut microbes

Authors' code: s-andrews/FastQC (GPL-3.0), ewels/MultiQC (GPL-3.0)

Status: code verified, 887 files readable, 2 matches

[39337] doi:10.1080/19490976.2023.2178800 [paper, data]

<i>Limosilactobacillus reuteri</i> normalizes blood-brain barrier dysfunction and neurodevelopment deficits associated with prenatal exposure to lipopolysaccharide.

Journal: Gut microbes

Status: data only, 1 dataset cited

[39338] doi:10.1080/19490976.2023.2188874 [paper, data]

Gut microbiota modulates visceral sensitivity through calcitonin gene-related peptide (CGRP) production.

Journal: Gut microbes

Status: data only, 1 dataset cited

[39339] doi:10.1080/20008066.2023.2225154 [paper, data]

Peritraumatic physical symptoms and the clinical trajectory of PTSD after a terrorist attack: a network model approach.

Journal: European journal of psychotraumatology

Status: data only, 1 dataset cited

[39340] doi:10.1080/20008066.2023.2246338 [paper, data]

Biological embedding of early trauma: the role of higher prefrontal synaptic strength.

Journal: European journal of psychotraumatology

Status: data only, 1 dataset cited

[39341] doi:10.1080/20008066.2023.2297641 [paper, data]

Components of event-related potentials and borderline personality disorder: a meta-analysis.

Journal: European journal of psychotraumatology

Status: data only, 2 datasets cited

[39342] doi:10.1093/bib/bbac491 [paper, repository]

Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience.

Journal: Briefings in bioinformatics

Authors' code: BlueBrain/NeuroMorphoVis (GPL-3.0), gnu.org/licenses/gpl-3.0.en.html (no license), BlueBrain/Ultraliser (GPL-3.0), BlueBrain/VessMorphoVis (GPL-3.0), MarcoAttene/MeshFix-V2.1 (gpl), epfl.ch/research/domains (no license), microns-explorer.org (no license)

Status: code verified, 1,114 files readable, 19 matches

[39343] doi:10.1093/bib/bbac541 [paper, repository]

Learning single-cell chromatin accessibility profiles using meta-analytic marker genes.

Journal: Briefings in bioinformatics

Authors' code: carushi/Catactor (MIT)

Status: code verified, 74 files readable, 6 matches

[39344] doi:10.1093/brain/awac018 [paper, data]

Frontostriatothalamic effective connectivity and dopaminergic function in the psychosis continuum.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[39345] doi:10.1093/brain/awac043 [paper]

Psychiatric symptoms of frontotemporal dementia and subcortical (co-)pathology burden: new insights.

Journal: Brain : a journal of neurology

Status: code on request

[39346] doi:10.1093/brain/awac069 [paper, repository]

Network structure and transcriptomic vulnerability shape atrophy in frontotemporal dementia.

Journal: Brain : a journal of neurology

Authors' code: LTS5/cmp (BSD-3-Clause)

Status: code verified, 70 files readable, 2 matches

[39347] doi:10.1093/brain/awac304 [paper]

Graph lesion-deficit mapping of fluid intelligence.

Journal: Brain : a journal of neurology

Status: code on request

[39348] doi:10.1093/brain/awac309 [paper, data]

Cerebrovascular insulin receptors are defective in Alzheimer's disease.

Journal: Brain : a journal of neurology

Status: data only, 6 datasets cited

[39349] doi:10.1093/brain/awac335 [paper, repository]

Multimodal prediction of residual consciousness in the intensive care unit: the CONNECT-ME study.

Journal: Brain : a journal of neurology

Authors' code: fraimondo/connect-me (no license)

Status: code verified, 21 files readable, 5 matches

[39350] doi:10.1093/cercor/bhac085 [paper, repository]

The human vestibular cortex: functional anatomy of OP2, its connectivity and the effect of vestibular disease.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: yangzhi-psy/RAICAR (no license)

Status: code verified, 59 files readable, 2 matches

[39351] doi:10.1093/cercor/bhac094 [paper, repository]

Expectations boost the reconstruction of auditory features from electrophysiological responses to noisy speech.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: corcorana/SWS_NVS_code (GPL-3.0)

Status: code verified, 48 files readable, 12 matches

[39352] doi:10.1093/cercor/bhac101 [paper, repository]

All-or-none neural mechanisms underlying face categorization: evidence from the N170.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF nxav8 (no license), OSF fvtc3 (no license)

Status: code verified, 60 files readable, 2 matches

[39353] doi:10.1093/cercor/bhac102 [paper, data]

Prediction and action in cortical pain processing.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[39354] doi:10.1093/cercor/bhac108 [paper, repository]

A connectome-based neuromarker of nonverbal number acuity and arithmetic skills.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Dzhang1989z/Numerosity-CPM (no license)

Status: code verified, 5 files readable, 1 match

[39355] doi:10.1093/chemse/bjad042 [paper]

Oral thermal processing in the gustatory cortex of awake mice.

Journal: Chemical senses

Status: code on request

[39356] doi:10.1093/eurheartj/ehac521 [paper, data]

Coronary microvascular dysfunction is associated with impaired cognitive function: the Cerebral-Coronary Connection study (C3 study).

Journal: European heart journal

Status: data only, 1 dataset cited

[39357] doi:10.1093/gbe/evac174 [paper, repository]

Co-expression Gene Networks and Machine-learning Algorithms Unveil a Core Genetic Toolkit for Reproductive Division of Labour in Rudimentary Insect Societies.

Journal: Genome biology and evolution

Authors' code: emelinefavreau/majortransitionscripts (no license)

Status: code verified, 58 files readable, 17 matches

[39358] doi:10.1093/hmg/ddac161 [paper, repository]

The Parkinson's disease variant rs356182 regulates neuronal differentiation independently from alpha-synuclein.

Journal: Human molecular genetics

Authors' code: jordanprahl/prahl_et_al_20210629 (no license)

Status: empty repository, 1 file readable

[39359] doi:10.1093/hmg/ddac205 [paper, data]

Failure of diet-induced transcriptional adaptations in alpha-synuclein transgenic mice.

Journal: Human molecular genetics

Status: data only, 1 dataset cited

[39360] doi:10.1093/hmg/ddac211 [paper, repository]

Expression and subcellular localization of USH1C/harmonin in human retina provides insights into pathomechanisms and therapy.

Journal: Human molecular genetics

Authors' code: sokrypton/colabfold (MIT)

Status: code verified, 74 files readable, 2 matches

[39361] doi:10.1093/ijnp/pyac076 [paper]

Muscarinic and NMDA Receptors in the Substantia Nigra Play a Role in Reward-Related Learning.

Journal: The international journal of neuropsychopharmacology

Status: code on request

[39362] doi:10.1093/nar/gkac1042 [paper, repository]

scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes.

Journal: Nucleic acids research

Authors' code: netbiolab/scHumanNet (GPL-3.0)

Status: code verified, 374 files readable, 22 matches

[39363] doi:10.1093/nar/gkac895 [paper, repository]

Brain Catalog: a comprehensive resource for the genetic landscape of brain-related traits.

Journal: Nucleic acids research

Authors' code: gamazonlab/MR-JTI (MIT)

Status: code verified, 22 files readable, 2 matches

[39364] doi:10.1093/neuonc/noac141 [paper, data]

Therapeutic targeting of prenatal pontine ID1 signaling in diffuse midline glioma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[39365] doi:10.1093/neuonc/noac158 [paper, repository]

Novel cancer gene discovery using a forward genetic screen in RCAS-PDGFB-driven gliomas.

Journal: Neuro-oncology

Authors' code: UppsalaGenomeCenter/InSiDeR (no license)

Status: code verified, 2 files readable

[39366] doi:10.1093/noajnl/vdad023 [paper, repository]

MRI-based classification of IDH mutation and 1p/19q codeletion status of gliomas using a 2.5D hybrid multi-task convolutional neural network.

Journal: Neuro-oncology advances

Authors' code: satrajitgithub/glioma_molecular_2.5D (no license)

Status: empty repository

[39367] doi:10.1093/noajnl/vdad027 [paper, repository]

Automated tumor segmentation and brain tissue extraction from multiparametric MRI of pediatric brain tumors: A multi-institutional study.

Journal: Neuro-oncology advances

Authors' code: deepmedic/deepmedic (CC-BY-NC-SA-4.0)

Status: code verified, 45 files readable

[39368] doi:10.1093/noajnl/vdad045 [paper]

Predicting methylation class from diffusely infiltrating adult gliomas using multimodality MRI data.

Journal: Neuro-oncology advances

Status: code on request

[39369] doi:10.1093/noajnl/vdad048 [paper, repository]

UBE2C promotes leptomeningeal dissemination and is a therapeutic target in brain metastatic disease.

Journal: Neuro-oncology advances

Authors' code: ClaraBarreto/UBE2C (no license)

Status: empty repository, 1 file readable

[39370] doi:10.1093/noajnl/vdad064 [paper, repository]

Dual-center validation of using magnetic resonance imaging radiomics to predict stereotactic radiosurgery outcomes.

Journal: Neuro-oncology advances

Authors' code: baines-imaging-research-laboratory/radiomics-for-srs-external-validation-code (no license)

Status: code verified, 2,000 files readable, 7 matches

[39371] doi:10.1093/noajnl/vdad073 [paper, data]

Screening of predicted synergistic multi-target therapies in glioblastoma identifies new treatment strategies.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[39372] doi:10.1093/noajnl/vdad092 [paper, repository]

Imaging telomerase reverse transcriptase expression in oligodendrogliomas using hyperpolarized δ-[1-¹³C]-gluconolactone.

Journal: Neuro-oncology advances

Authors' code: ViswanathLab/EPSI (no license)

Status: code verified, 5 files readable

[39373] doi:10.1093/noajnl/vdad095 [paper, data]

ABL1 and ABL2 promote medulloblastoma leptomeningeal dissemination.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[39374] doi:10.1093/noajnl/vdad101 [paper, data]

Dissecting the tumor microenvironment of epigenetically driven gliomas: Opportunities for single-cell and spatial multiomics.

Journal: Neuro-oncology advances

Status: data only, 1 dataset cited

[39375] doi:10.1093/noajnl/vdad104 [paper]

Longitudinal analysis of serum-derived extracellular vesicle RNA to monitor dacomitinib treatment response in EGFR-amplified recurrent glioblastoma patients.

Journal: Neuro-oncology advances

Status: code on request

[39376] doi:10.1093/noajnl/vdad119 [paper, repository]

Radio-pathomic approaches in pediatric neuro-oncology: Opportunities and challenges.

Journal: Neuro-oncology advances

Authors' code: Xiyue-Wang/TransPath (GPL-3.0)

Status: code verified, 29 files readable

[39377] doi:10.1093/noajnl/vdad134 [paper, repository]

Longitudinal drug synergy assessment using convolutional neural network image-decoding of glioblastoma single-spheroid cultures.

Journal: Neuro-oncology advances

Authors' code: KrzysztofPastuszak/Longitudinal-drug-synergy-assessment (MIT)

Status: code verified, 3 files readable

[39378] doi:10.1093/noajnl/vdad139 [paper, repository]

Direct image to subtype prediction for brain tumors using deep learning.

Journal: Neuro-oncology advances

Authors' code: KatherLab/marugoto (MIT)

Status: code verified, 37 files readable

[39379] doi:10.1093/noajnl/vdad142 [paper, repository]

Spatial architecture of high-grade glioma reveals tumor heterogeneity within distinct domains.

Journal: Neuro-oncology advances

Authors' code: SaskiaFreytag/spatial_brain_cancer (no license)

Status: code verified, 26 files readable, 9 matches

[39380] doi:10.1093/schizbullopen/sgad029 [paper]

Unveiling the Human Brain Virome in Brodmann Area 46: Novel Insights Into Dysbiosis and Its Association With Schizophrenia.

Journal: Schizophrenia bulletin open

Status: data only

[39381] doi:10.1093/schizbullopen/sgad031 [paper, data]

Cumulative Impact of Morphometric Features in Schizophrenia in Two Independent Samples.

Journal: Schizophrenia bulletin open

Status: data only, 2 datasets cited

[39382] doi:10.1096/fj.202201197r [paper, data]

Boosting of tau protein aggregation by CD40 and CD48 gene expression in Alzheimer's disease.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[39383] doi:10.1107/s1600577522011080 [paper, data]

Data-driven modeling and control of an X-ray bimorph adaptive mirror.

Journal: Journal of synchrotron radiation

Status: data only, 2 datasets cited

[39384] doi:10.1117/1.nph.10.1.013510 [paper]

Revealing the spatiotemporal requirements for accurate subject identification with resting-state functional connectivity: a simultaneous fNIRS-fMRI study.

Journal: Neurophotonics

Status: code on request

[39385] doi:10.1117/1.nph.10.1.013511 [paper]

Two-in-one system and behavior-specific brain synchrony during goal-free cooperative creation: an analytical approach combining automated behavioral classification and the event-related generalized linear model.

Journal: Neurophotonics

Status: code on request

[39386] doi:10.1117/1.nph.10.1.015004 [paper, repository]

Controlling the familywise error rate in widefield optical neuroimaging of functional connectivity in mice.

Journal: Neurophotonics

Authors' code: codeocean:7947046 (no license)

Status: code found, still to be checked

[39387] doi:10.1117/1.nph.10.1.015005 [paper]

<i>In vivo</i> characterization of cerebrovascular impairment induced by amyloid β peptide overload in glymphatic clearance system using swept-source optical coherence tomography.

Journal: Neurophotonics

Status: code on request

[39388] doi:10.1117/1.nph.10.1.015009 [paper, repository]

Imaging the brain in action: a motorized optical rotary joint for wide field fibroscopy in freely moving animals.

Journal: Neurophotonics

Authors' code: ShulzLab/MORJ (no license)

Status: code verified, 22 files readable

[39389] doi:10.1117/1.nph.10.1.015010 [paper, repository]

Influence of oversimplifying the head anatomy on cerebral blood flow measurements with diffuse correlation spectroscopy.

Journal: Neurophotonics

Authors' code: github.gatech.edu/buckley-lab-code-repository/oversimplification_of_human_head.git (no license)

Status: code verified

[39390] doi:10.1117/1.nph.10.1.016601 [paper, repository]

Open-source statistical and data processing tools for wide-field optical imaging data in mice.

Journal: Neurophotonics

Authors' code: brierl/mouse_woi (no license)

Status: code verified, 152 files readable, 17 matches

[39391] doi:10.1142/9789811270611_0002 [paper, repository]

Detection of Mild Cognitive Impairment from Language Markers with Crossmodal Augmentation.

Journal: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing

Authors' code: illidanlab/XModalAug (no license)

Status: dead link

[39392] doi:10.1159/000527564 [paper, data]

Medulloblastoma Development in a Patient with a Constitutional Balanced t(5;22)(q35.1;q11.2) Involving the <i>NF2</i> Gene.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39393] doi:10.1159/000528880 [paper, data]

Hypoglycemic Encephalopathy Manifesting with Cortical Hemichorea-Hemiballismus Syndrome: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39394] doi:10.1159/000529121 [paper, data]

Efficacy of Intravenous Immunoglobulins against Chronic Lymphocytic Inflammation with Pontine Perivascular Enhancement Responsive to Steroids: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39395] doi:10.1159/000529122 [paper, data]

COVID-19-Associated Cerebrovascular Events: A Case Series Study and a Literature Review of Possible Mechanisms.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39396] doi:10.1159/000529169 [paper, data]

Non-Intentional N-Acetylcysteine Overdose Associated with Cerebral Edema and Brain Death.

Journal: Case reports in gastroenterology

Status: data only, 1 dataset cited

[39397] doi:10.1159/000529180 [paper, data]

An Autopsy Case of Elderly Onset Brainstem Acute Disseminated Encephalomyelitis.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39398] doi:10.1159/000529231 [paper, data]

Isolated Internal Ophthalmoplegia from Posterior Cerebral Artery Neurovascular Conflict.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[39399] doi:10.1159/000529533 [paper, data]

Sustained, Effortless Weight Loss after Damage to the Left Frontoinsular Cortex: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39400] doi:10.1159/000529830 [paper, data]

Differentiating Cerebral Toxoplasmosis and Tumor Recurrence by Thallium-201 Single-Photon Emission Computerized Tomography in a 28-Year-Old Female with Astrocytoma.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39401] doi:10.1159/000529846 [paper, data]

Paraneoplastic Autoimmune Limbic Encephalitis Associated with an Atypical Carcinoid Tumor of the Lung: A Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39402] doi:10.1159/000530086 [paper, data]

Long-Term Follow-Up of a Family with Retinal Dystrophy Caused by RPE65 Mutation.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[39403] doi:10.1159/000530109 [paper, data]

Brain-Only Metastasis and 10-Year Survival after Curative Gastric Cancer Resection: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39404] doi:10.1159/000530220 [paper, data]

MRI-Induced Neurosensory Events in Decorative Black Tattoos: Study by Advanced Experimental Methods.

Journal: Case reports in dermatology

Status: data only, 1 dataset cited

[39405] doi:10.1159/000530926 [paper, data]

Encephalitis as a Clinical Manifestation of COVID-19: A Case Series.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39406] doi:10.1159/000530980 [paper, data]

Utilizing Reduced Labeled Proton Clearance to Identify Preclinical Alzheimer Disease with 3D ASL MRI.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39407] doi:10.1159/000531229 [paper, data]

Hypertrophic Pachymeningitis with Persistent Intrathecal Inflammation Secondary to Neurosarcoidosis Treated with Intraventricular Chemotherapy: A Case Report.

Journal: Case reports in neurology

Status: data only, 2 datasets cited

[39408] doi:10.1159/000531779 [paper, data]

A Rare Case of Cardioembolic Spinal Stroke in a Young Female: Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[39409] doi:10.1159/000533517 [paper, data]

Spinal Dysraphism Presenting as Neuropathic Ulcers: A Case Report of a Delayed Diagnosis.

Journal: Case reports in dermatology

Status: data only, 1 dataset cited

[39410] doi:10.1159/000533518 [paper, data]

An Unusual Presentation of Hearing Impairment in an Adult with Pineal Region Germinoma: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39411] doi:10.1159/000533785 [paper, data]

Contemplation of the Effect of Nivolumab Plus Cabosantinib Therapy on Cerebral Hemorrhage in Patients with Brain Metastasis of Renal Cell Carcinoma: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39412] doi:10.1159/000534036 [paper, data]

Retroperitoneal Hematoma as an Atypical Presentation of Choriocarcinoma: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39413] doi:10.1159/000534549 [paper, data]

Entrectinib Response to ROS1-Fusion-Positive Non-Small-Cell Lung Cancer That Progressed on Crizotinib with Leptomeningeal Metastasis: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39414] doi:10.1159/000534572 [paper, data]

Response of Brain and Meningeal Metastases to Trastuzumab-Deruxtecan in a Patient with HER2-Low Breast Cancer: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39415] doi:10.1159/000534709 [paper, data]

Two Pediatric Patients with Acute Acquired Comitant Esotropia as the First Symptom of Brainstem Tumor: A Case Report.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[39416] doi:10.1159/000535172 [paper, data]

Cerebrospinal Fluid Concentration of the RET Inhibitor Pralsetinib: A Case Report.

Journal: Case reports in oncology

Status: data only, 1 dataset cited

[39417] doi:10.1162/imag_a_00043 [paper, repository]

Ten recommendations for reducing the carbon footprint of research computing in human neuroimaging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: lfwa/carbontracker (MIT), NickESouter/fMRIPrepCleanup (MIT), OSF kq9ue (no license)

Status: code verified, 67 files readable, 1 match

[39418] doi:10.1162/netn_a_00263 [paper, repository]

Stability and dynamics of a spectral graph model of brain oscillations.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Raj-Lab-UCSF/spectrome-stability (MIT)

Status: code verified, 25 files readable, 2 matches

[39419] doi:10.1162/netn_a_00271 [paper, repository]

Coupling of the spatial distributions between sMRI and PET reveals the progression of Alzheimer's disease.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: YongLiulab (no license)

Status: code verified

[39420] doi:10.1162/netn_a_00274 [paper, repository]

3M_BANTOR: A regression framework for multitask and multisession brain network distance metrics.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: applebrownbetty/braindist_regression (no license)

Status: code verified, 11 files readable, 6 matches

[39421] doi:10.1162/netn_a_00281 [paper, repository]

A transformer model for learning spatiotemporal contextual representation in fMRI data.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: ThisIsNima/Spatio-Temporal-Transformer (no license)

Status: dead link

[39422] doi:10.1162/netn_a_00283 [paper, repository]

Circuit analysis of the &lt;i&gt;Drosophila&lt;/i&gt; brain using connectivity-based neuronal classification reveals organization of key communication pathways.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: k3t3n/FlyConn (no license)

Status: code verified, 31 files readable, 5 matches

[39423] doi:10.1162/netn_a_00284 [paper, repository]

Multimodal multilayer network centrality relates to executive functioning.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: nkoub/multinetx (no license), networkx (no license), multinetlab-amsterdam/projects (MIT)

Status: code verified, 101 files readable, 13 matches

[39424] doi:10.1162/netn_a_00285 [paper]

Multiclass characterization of frontotemporal dementia variants via multimodal brain network computational inference.

Journal: Network neuroscience (Cambridge, Mass.)

Status: code on request

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