Every paper, by date: page 175

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 175 of 200: 17 January 2023 to 6 January 2023.

Tuesday, 17 January 2023 (17 papers, 5 on this page)

[38977] doi:10.3390/cells12030343 [paper, repository]

Sex-Specific Microglial Responses to Glucocerebrosidase Inhibition: Relevance to GBA1-Linked Parkinson's Disease.

Journal: Cells

Authors' code: Zenodo 7541954 (CC-BY-4.0)

Status: code verified

[38978] doi:10.3390/pathogens12020150 [paper, data]

Genome Characterization and Spaciotemporal Dispersal Analysis of Bagaza Virus Detected in Portugal, 2021.

Journal: Pathogens (Basel, Switzerland)

Status: data only, 1 dataset cited

[38979] doi:10.3390/s23031078 [paper, data]

IMF-Based MF and HS Energy Feature Information of F5, and F6 Movement and Motor Imagery EEG Signals in Delta Rhythms Using HHT.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[38980] doi:10.7554/elife.82641 [paper, data]

A mechanism of uncompetitive inhibition of the serotonin transporter.

Journal: eLife

Status: data only, 1 dataset cited

[38981] doi:10.7554/elife.83139 [paper, repository]

Neural assemblies uncovered by generative modeling explain whole-brain activity statistics and reflect structural connectivity.

Journal: eLife

Authors' code: jertubiana/PGM (BSD-3-Clause), benglitz/fishualizer_public (no license), vdplasthijs/zf-rbm (MIT)

Status: code verified, 108 files readable, 27 matches

Monday, 16 January 2023 (14 papers)

[38982] doi:10.1038/s41531-023-00444-w [paper, repository]

Dynamic physiological α-synuclein S129 phosphorylation is driven by neuronal activity.

Journal: NPJ Parkinson's disease

Authors' code: udettmer/dettmerlab (no license)

Status: empty repository

[38983] doi:10.1038/s41562-022-01507-3 [paper, repository]

A modality-independent proto-organization of human multisensory areas.

Journal: Nature human behaviour

Authors' code: giacomohandjaras/101_Dalmatians (GPL-3.0)

Status: code verified, 62 files readable, 2 matches

[38984] doi:10.1038/s41593-022-01243-x [paper, repository]

Massively parallel identification of mRNA localization elements in primary cortical neurons.

Journal: Nature neuroscience

Authors' code: LauraBreimann/smFISH_neuron_analysis (MIT), melonheader/Stability (no license), IgorUlitsky/MPRNA (no license)

Status: code verified, 8 files readable

[38985] doi:10.1038/s41598-022-23902-6 [paper, repository]

Unsupervised EEG preictal interval identification in patients with drug-resistant epilepsy.

Journal: Scientific reports

Authors' code: adrianaleal/eeg-preictal-identification-epilepsy (no license)

Status: code verified, 162 files readable, 9 matches

[38986] doi:10.1038/s41598-022-27332-2 [paper, repository]

Decoding of the speech envelope from EEG using the VLAAI deep neural network.

Journal: Scientific reports

Authors' code: exporl/vlaai (GPL-3.0)

Status: code verified, 9 files readable, 3 matches

[38987] doi:10.1111/acel.13780 [paper, data]

Protein phosphatase 2A activators reverse age-related behavioral changes by targeting neural cell senescence.

Journal: Aging cell

Status: data only, 1 dataset cited

[38988] doi:10.1186/s10020-022-00593-3 [paper, data]

Placental DNA methylation profile as predicting marker for autism spectrum disorder (ASD).

Journal: Molecular medicine (Cambridge, Mass.)

Status: data only, 7 datasets cited

[38989] doi:10.1186/s12883-023-03065-1 [paper, data]

A novel case of two siblings harbouring homozygous variant in the NEUROG1 gene with autism as an additional phenotype: a case report.

Journal: BMC neurology

Status: data only, 3 datasets cited

[38990] doi:10.1186/s13041-023-00996-1 [paper, data]

Genetic deletion of nitric oxide synthase 2 ameliorates Parkinson's disease pathology and neuroinflammation in a transgenic mouse model of synucleinopathy.

Journal: Molecular brain

Status: data only, 1 dataset cited

[38991] doi:10.3390/biom13010185 [paper]

Single-Cell Profiling Comparisons of Tumor Microenvironment between Primary Advanced Lung Adenocarcinomas and Brain Metastases and Machine Learning Algorithms in Predicting Immunotherapeutic Responses.

Journal: Biomolecules

Status: data only

[38992] doi:10.3390/biomedicines11010233 [paper, data]

Subcortical Structures in Demented Schizophrenia Patients: A Comparative Study.

Journal: Biomedicines

Status: data only, 1 dataset cited

[38993] doi:10.7150/thno.76553 [paper, data]

Phloretin decreases microglia-mediated synaptic engulfment to prevent chronic mild stress-induced depression-like behaviors in the mPFC.

Journal: Theranostics

Status: data only, 1 dataset cited

[38994] doi:10.7554/elife.79513 [paper, data]

Inhibition is a prevalent mode of activity in the neocortex around awake hippocampal ripples in mice.

Journal: eLife

Status: data only, 1 dataset cited

[38995] doi:10.7554/elife.80379 [paper, repository]

Individual behavioral trajectories shape whole-brain connectivity in mice.

Journal: eLife

Authors' code: spinicist/QUIT (MPL-2.0)

Status: code verified, 186 files readable

Sunday, 15 January 2023 (2 papers)

[38996] doi:10.3390/genes14010226 [paper, data]

The Potential of <i>ANK1</i> to Predict Parkinson's Disease.

Journal: Genes

Status: data only, 1 dataset cited

[38997] doi:10.3390/s23021008 [paper]

Estimating the Depth of Anesthesia from EEG Signals Based on a Deep Residual Shrinkage Network.

Journal: Sensors (Basel, Switzerland)

Status: code on request

Saturday, 14 January 2023 (13 papers)

[38998] doi:10.1016/j.heliyon.2023.e13029 [paper, repository]

Electricity price forecast based on the STL-TCN-NBEATS model.

Journal: Heliyon

Authors' code: Siriusong/STNmodel (no license)

Status: dead link

[38999] doi:10.1016/j.isci.2023.105970 [paper]

Consolidation of cellular memory representations in superficial neocortex.

Journal: iScience

Status: code on request

[39000] doi:10.1016/j.isci.2023.105976 [paper, repository]

CNNs reveal the computational implausibility of the expertise hypothesis.

Journal: iScience

Authors' code: martinezjulio/sdnn (MIT), OSF qtnzs (no license), kathadobs/exphypo (no license)

Status: code verified, 108 files readable, 3 matches

[39001] doi:10.1016/j.isci.2023.105979 [paper]

A new means of energy supply driven by terahertz photons recovers related neural activity.

Journal: iScience

Status: code on request

[39002] doi:10.1016/j.isci.2023.105983 [paper]

Rate of tau propagation is a heritable disease trait in genetically diverse mouse strains.

Journal: iScience

Status: code on request

[39003] doi:10.1016/j.isci.2023.105992 [paper, data]

Chrna5 and lynx prototoxins identify acetylcholine super-responder subplate neurons.

Journal: iScience

Status: data only, 1 dataset cited

[39004] doi:10.1038/s41467-023-35836-2 [paper, repository]

An optofluidic platform for interrogating chemosensory behavior and brainwide neural representation in larval zebrafish.

Journal: Nature communications

Authors' code: khsamuelsy/FishChip (no license)

Status: code verified, 195 files readable, 9 matches

[39005] doi:10.1038/s41597-023-01938-1 [paper, data]

Eagle-449: A volumetric, whole-brain compilation of brain atlases for vestibular functional MRI research.

Journal: Scientific data

Status: data only, 1 dataset cited

[39006] doi:10.1038/s41598-023-28004-5 [paper, data]

Learned value modulates the access to visual awareness during continuous flash suppression.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39007] doi:10.1038/s41598-023-28009-0 [paper, data]

EEG-based spatio-temporal relation signatures for the diagnosis of depression and schizophrenia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39008] doi:10.1038/s42003-023-04425-w [paper, data]

Inhibition of c-Jun in AgRP neurons increases stress-induced anxiety and colitis susceptibility.

Journal: Communications biology

Status: data only, 1 dataset cited

[39009] doi:10.3390/biomedicines11010214 [paper, data]

TGF-Beta Modulates the Integrity of the Blood Brain Barrier In Vitro, and Is Associated with Metabolic Alterations in Pericytes.

Journal: Biomedicines

Status: data only, 1 dataset cited

[39010] doi:10.3390/genes14010222 [paper, data]

Evolutionary Landscape of &lt;i&gt;SOX&lt;/i&gt; Genes to Inform Genotype-to-Phenotype Relationships.

Journal: Genes

Status: data only, 5 datasets cited

Friday, 13 January 2023 (25 papers)

[39011] doi:10.1002/acn3.51729 [paper, data]

Disorder of consciousness: Structural integrity of brain networks for the clinical assessment.

Journal: Annals of clinical and translational neurology

Status: data only, 2 datasets cited

[39012] doi:10.1002/hbm.26189 [paper, repository]

Neural representations of the perception of handwritten digits and visual objects from a convolutional neural network compared to humans.

Journal: Human brain mapping

Authors' code: google/deepdream (Apache-2.0), bsplku/ISL_RSA_DigitObject_Visual (no license)

Status: code verified, 12 files readable, 1 match

[39013] doi:10.1002/hbm.26193 [paper, repository]

Mechanisms of speed encoding in the human middle temporal cortex measured by 7T fMRI.

Journal: Human brain mapping

Authors' code: befrancislikeme/Encoding-spatiotemporal-frequencies-hMT (no license)

Status: code verified, 8 files readable

[39014] doi:10.1002/hbm.26202 [paper, repository]

Evaluating test-retest reliability and sex-/age-related effects on temporal clustering coefficient of dynamic functional brain networks.

Journal: Human brain mapping

Authors' code: Yicheng-Long/dynamic_graph_metrics (no license)

Status: code verified, 4 files readable, 2 matches

[39015] doi:10.1007/s00285-022-01859-4 [paper, repository]

Heteroclinic cycling and extinction in May-Leonard models with demographic stochasticity.

Journal: Journal of mathematical biology

Authors' code: nwbarendregt/StochasticHC (no license)

Status: code verified, 26 files readable, 7 matches

[39016] doi:10.1016/j.dcn.2023.101198 [paper]

Characterizing different cognitive and neurobiological profiles in a community sample of children using a non-parametric approach: An fMRI study.

Journal: Developmental cognitive neuroscience

Status: code on request

[39017] doi:10.1038/s41467-023-35787-8 [paper, repository]

Gut microbiome dysbiosis drives metabolic dysfunction in Familial dysautonomia.

Journal: Nature communications

Authors' code: nvpinkham/Dysautonomia (no license), Zenodo 7384390 (other-open)

Status: code verified, 80 files readable, 7 matches

[39018] doi:10.1038/s41467-023-35806-8 [paper, repository]

Interleukin-13 and its receptor are synaptic proteins involved in plasticity and neuroprotection.

Journal: Nature communications

Authors' code: Rida-Rehman/PROTEAS (GPL-3.0), Zenodo 7470193 (other-open)

Status: code verified, 4 files readable

[39019] doi:10.1038/s41467-023-35826-4 [paper]

Topographic representation of current and future threats in the mouse nociceptive amygdala.

Journal: Nature communications

Status: code on request

[39020] doi:10.1038/s41531-022-00441-5 [paper, data]

Combined EEG and immersive virtual reality unveil dopaminergic modulation of error monitoring in Parkinson's Disease.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[39021] doi:10.1038/s41598-022-27101-1 [paper, data]

Exploring the latent structure of behavior using the Human Connectome Project's data.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39022] doi:10.1038/s41598-023-27978-6 [paper, data]

Utilization of temporal autoencoder for semi-supervised intracranial EEG clustering and classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39023] doi:10.1038/s42003-022-04382-w [paper, data]

Prolonged microgravity induces reversible and persistent changes on human cerebral connectivity.

Journal: Communications biology

Status: data only, 1 dataset cited

[39024] doi:10.1038/s42003-023-04410-3 [paper]

Diverse but unique astrocytic phenotypes during embryonic stem cell differentiation, culturing and development.

Journal: Communications biology

Status: code on request

[39025] doi:10.1126/sciadv.ade6049 [paper, repository]

Toward naturalistic neuroscience: Mechanisms underlying the flattening of brain hierarchy in movie-watching compared to rest and task.

Journal: Science advances

Authors' code: Zenodo 7233436 (CC-BY-4.0), decolab/gec (CC-BY-NC-4.0)

Status: code verified, 10 files readable, 2 matches

[39026] doi:10.1155/2023/9379618 [paper, data]

A Novel Approach for Sleep Arousal Disorder Detection Based on the Interaction of Physiological Signals and Metaheuristic Learning.

Journal: Computational intelligence and neuroscience

Status: code on request, 1 dataset cited

[39027] doi:10.1159/000527798 [paper, data]

Intra-Brain and Plasma Levels of L-Serine Are Associated with Cognitive Status in Patients with Chronic Kidney Disease.

Journal: Kidney diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[39028] doi:10.1186/s13024-022-00593-1 [paper, data]

Advances in sequencing technologies for amyotrophic lateral sclerosis research.

Journal: Molecular neurodegeneration

Status: data only, 12 datasets cited

[39029] doi:10.1186/s13041-023-00994-3 [paper, data]

Tyrosine phosphatase STEP₆₁ in human dementia and in animal models with amyloid and tau pathology.

Journal: Molecular brain

Status: data only, 1 dataset cited

[39030] doi:10.15252/emmm.202216434 [paper, repository]

Interferon regulates neural stem cell function at all ages by orchestrating mTOR and cell cycle.

Journal: EMBO molecular medicine

Authors' code: Martin-Villalba-lab/Data (no license)

Status: code verified, 33 files readable, 9 matches

[39031] doi:10.3389/fgene.2022.1053263 [paper, data]

Interferon gamma-related gene signature based on anti-tumor immunity predicts glioma patient prognosis.

Journal: Frontiers in genetics

Status: data only, 7 datasets cited

[39032] doi:10.3389/fncom.2022.1058957 [paper, repository]

A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics.

Journal: Frontiers in computational neuroscience

Authors' code: gitlab.ebrains.eu/kancourt/tvb-adex-showcase3-git (no license), ebrains.eu (no license)

Status: code verified, 17 files readable, 12 matches

[39033] doi:10.3389/fnmol.2022.1104657 [paper]

Compulsive methamphetamine self-administration in the presence of adverse consequences is associated with increased hippocampal mRNA expression of cellular adhesion molecules.

Journal: Frontiers in molecular neuroscience

Status: data only

[39034] doi:10.7554/elife.81325 [paper, repository]

Sensorimotor feedback loops are selectively sensitive to reward.

Journal: eLife

Authors' code: OSF 7t8yj (no license)

Status: code verified, 41 files readable, 4 matches

[39035] doi:10.7554/elife.83496 [paper, repository]

Histological E-data Registration in rodent Brain Spaces.

Journal: eLife

Authors' code: Whitlock-Group/TRACER (MIT), Whitlock-Group/HERBS (MIT), cortex-lab/allenCCF (no license)

Status: code verified, 113 files readable, 2 matches

Thursday, 12 January 2023 (39 papers)

[39036] doi:10.1002/wsbm.1597 [paper, data]

The role of STING signaling in central nervous system infection and neuroinflammatory disease.

Journal: WIREs mechanisms of disease

Status: data only, 1 dataset cited

[39037] doi:10.1007/s11682-022-00754-2 [paper, repository]

Meta-analytic connectivity modelling of functional magnetic resonance imaging studies in autism spectrum disorders.

Journal: Brain imaging and behavior

Authors' code: NeuroStat/GenerateNull (no license)

Status: code verified, 4 files readable

[39038] doi:10.1016/j.crmeth.2022.100385 [paper, repository]

High-throughput combined voltage-clamp/current-clamp analysis of freshly isolated neurons.

Journal: Cell reports methods

Authors' code: emrekiziltug3/AutomatedClampAnalysis (no license), Zenodo 7411103 (other-open)

Status: code verified, 2 files readable

[39039] doi:10.1016/j.isci.2023.105960 [paper]

Temporal synchronization elicits enhancement of binocular vision functions.

Journal: iScience

Status: code on request

[39040] doi:10.1038/s41467-022-35619-1 [paper, data]

Large-scale perfused tissues via synthetic 3D soft microfluidics.

Journal: Nature communications

Status: data only, 1 dataset cited

[39041] doi:10.1038/s41467-023-35824-6 [paper, repository]

Distributed context-dependent choice information in mouse posterior cortex.

Journal: Nature communications

Authors' code: Zenodo 7435887 (other-open), cbs-ncb/distributeddm (no license)

Status: code verified, 626 files readable, 6 matches

[39042] doi:10.1038/s41539-022-00151-w [paper]

Quick balance skill improvement after short-term training with error amplification feedback for older adults.

Journal: NPJ science of learning

Status: code on request

[39043] doi:10.1038/s41593-022-01240-0 [paper, repository]

A TREM2-activating antibody with a blood-brain barrier transport vehicle enhances microglial metabolism in Alzheimer's disease models.

Journal: Nature neuroscience

Authors' code: denalitherapeutics/Lengerich_natneuro_2022 (no license)

Status: code verified, 35 files readable, 9 matches

[39044] doi:10.1038/s41598-022-26946-w [paper]

Decoding of human identity by computer vision and neuronal vision.

Journal: Scientific reports

Status: code on request

[39045] doi:10.1038/s41598-022-27149-z [paper, data]

In silico and in vitro studies confirm Ondansetron as a novel acetylcholinesterase and butyrylcholinesterase inhibitor.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39046] doi:10.1038/s41598-022-27361-x [paper, data]

Neural decoding of music from the EEG.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39047] doi:10.1038/s41598-023-27453-2 [paper, repository]

Trogocytosis of neurons and glial cells by microglia in a healthy adult macaque retina.

Journal: Scientific reports

Authors' code: neitzlab/sbfsem-tools (MIT)

Status: code verified, 643 files readable, 3 matches

[39048] doi:10.1093/bioadv/vbad002 [paper, repository]

Deep learning predicts the impact of regulatory variants on cell-type-specific enhancers in the brain.

Journal: Bioinformatics advances

Authors' code: ftp/ftp.1000genomes.ebi.ac.uk/vol1 (no license), ftp.1000genomes.ebi.ac.uk/vol1/ftp (no license), Pandaman-Ryan/AgentBind-brain (GPL-3.0)

Status: code verified, 17 files readable, 2 matches

[39049] doi:10.1126/science.add3598 [paper, data]

Excessive mechanotransduction in sensory neurons causes joint contractures.

Journal: Science (New York, N.Y.)

Status: data only, 1 dataset cited

[39050] doi:10.1186/s12920-022-01425-3 [paper, data]

Disruption of DDX53 coding sequence has limited impact on iPSC-derived human NGN2 neurons.

Journal: BMC medical genomics

Status: data only, 1 dataset cited

[39051] doi:10.1186/s12920-023-01438-6 [paper, data]

A novel 1.38-kb deletion combined with a single nucleotide variant in KIAA0586 as a cause of Joubert syndrome.

Journal: BMC medical genomics

Status: data only, 2 datasets cited

[39052] doi:10.1186/s12967-022-03852-3 [paper, data]

CircNDC80 promotes glioblastoma multiforme tumorigenesis via the miR-139-5p/ECE1 pathway.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[39053] doi:10.1186/s13550-023-00950-1 [paper]

Development of a minimally invasive simultaneous estimation method for quantifying translocator protein binding with [¹⁸F]FEPPA positron emission tomography.

Journal: EJNMMI research

Status: code on request

[39054] doi:10.1186/s40478-023-01504-1 [paper, data]

Comparison of transcriptome profiles between medulloblastoma primary and recurrent tumors uncovers novel variance effects in relapses.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[39055] doi:10.1186/s40824-023-00341-6 [paper, data]

A simple method to isolate structurally and chemically intact brain vascular basement membrane for neural regeneration following traumatic brain injury.

Journal: Biomaterials research

Status: data only, 1 dataset cited

[39056] doi:10.1371/journal.pone.0276819 [paper, data]

Distribution and inflammatory cell response to intracranial delivery of radioluminescent Y2(SiO4)O:Ce particles.

Journal: PloS one

Status: data only, 1 dataset cited

[39057] doi:10.1523/eneuro.0282-22.2022 [paper, repository]

Viral Tracing Confirms Paranigral Ventral Tegmental Area Dopaminergic Inputs to the Interpeduncular Nucleus Where Dopamine Release Encodes Motivated Exploration.

Journal: eNeuro

Authors' code: TapperLab/TapperLab (no license)

Status: dead link

[39058] doi:10.3389/fnagi.2022.1091829 [paper, repository]

Asymptomatic carotid stenosis is associated with both edge and network reconfigurations identified by single-subject cortical thickness networks.

Journal: Frontiers in aging neuroscience

Authors' code: raamana/graynet (MIT)

Status: code verified, 37 files readable, 2 matches

[39059] doi:10.3389/fneur.2022.1055437 [paper, data]

Resting state network mapping in individuals using deep learning.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[39060] doi:10.3389/fnimg.2022.1073734 [paper, data]

Quality control in functional MRI studies with MRIQC and fMRIPrep.

Journal: Frontiers in neuroimaging

Status: data only, 1 dataset cited

[39061] doi:10.3389/fnins.2022.1044213 [paper, data]

Acrolein-inducing ferroptosis contributes to impaired peripheral neurogenesis in zebrafish.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[39062] doi:10.3389/fpsyg.2022.1028824 [paper, repository]

The ZuCo benchmark on cross-subject reading task classification with EEG and eye-tracking data.

Journal: Frontiers in psychology

Authors' code: norahollenstein/zuco-benchmark (no license)

Status: code verified, 26 files readable, 6 matches

[39063] doi:10.3389/fpsyg.2022.1035524 [paper, repository]

fMRI evidence that hyper-caricatured faces activate object-selective cortex.

Journal: Frontiers in psychology

Authors' code: Zenodo 1299483 (other-open), justingardner/mrtools (other)

Status: code verified, 1,271 files readable, 2 matches

[39064] doi:10.3389/fpsyt.2022.1010273 [paper, repository]

Performance evaluation of automated white matter hyperintensity segmentation algorithms in a multicenter cohort on cognitive impairment and dementia.

Journal: Frontiers in psychiatry

Authors' code: 0rC0/WMHpypes (BSD-3-Clause), Zenodo 5831211 (other-open)

Status: code verified, 19 files readable, 2 matches

[39065] doi:10.3389/fpsyt.2022.1025346 [paper, data]

MicroRNA-mRNA networks are dysregulated in opioid use disorder postmortem brain: Further evidence for opioid-induced neurovascular alterations.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[39066] doi:10.3389/fpsyt.2022.947622 [paper, repository]

Altered brain activity and functional connectivity after MDMA-assisted therapy for post-traumatic stress disorder.

Journal: Frontiers in psychiatry

Authors' code: kjamison/fmriclean (MIT)

Status: code verified, 17 files readable, 2 matches

[39067] doi:10.3390/antiox12010186 [paper]

Identification of Lipocalin 2 as a Ferroptosis-Related Key Gene Associated with Hypoxic-Ischemic Brain Damage via STAT3/NF-κB Signaling Pathway.

Journal: Antioxidants (Basel, Switzerland)

Status: data only

[39068] doi:10.3390/biomedicines11010194 [paper]

The Inflammatory Gene <i>PYCARD</i> of the Entorhinal Cortex as an Early Diagnostic Target for Alzheimer's Disease.

Journal: Biomedicines

Status: data only

[39069] doi:10.3390/brainsci13010129 [paper, repository]

Arcuate Fasciculus Microstructure Predicts Alcohol Dependence Risk through Higher IQ.

Journal: Brain sciences

Authors' code: olemiss.edu/projects/dnl (no license)

Status: dead link

[39070] doi:10.3390/cancers15020482 [paper, repository]

Combining Multi-Shell Diffusion with Conventional MRI Improves Molecular Diagnosis of Diffuse Gliomas with Deep Learning.

Journal: Cancers

Authors' code: GKaramiMP/ResNetModel (no license)

Status: code verified, 2 files readable

[39071] doi:10.3390/ijerph20021402 [paper]

Transcutaneous Auricular Vagus Nerve Stimulation Facilitates Cortical Arousal and Alertness.

Journal: International journal of environmental research and public health

Status: code on request

[39072] doi:10.3390/ijms24021470 [paper, data]

The Gut-Vascular Barrier as a New Protagonist in Intestinal and Extraintestinal Diseases.

Journal: International journal of molecular sciences

Status: data only, 4 datasets cited

[39073] doi:10.3390/ijms24021505 [paper, data]

Downregulation of CDC25C in NPCs Disturbed Cortical Neurogenesis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39074] doi:10.3390/s23020899 [paper, repository]

Influence of Channel Selection and Subject's Age on the Performance of the Single Channel EEG-Based Automatic Sleep Staging Algorithms.

Journal: Sensors (Basel, Switzerland)

Authors' code: akaraspt/deepsleepnet (Apache-2.0), emadeldeen24/AttnSleep (MIT)

Status: code verified, 56 files readable, 2 matches

Wednesday, 11 January 2023 (28 papers)

[39075] doi:10.1002/hbm.26200 [paper, data]

Developmental and aging resting functional magnetic resonance imaging brain state adaptations in adolescents and adults: A large N (>47K) study.

Journal: Human brain mapping

Status: code on request, 1 dataset cited

[39076] doi:10.1002/hbm.26203 [paper]

Optimized three-dimensional ultrashort echo time: Magnetic resonance fingerprinting for myelin tissue fraction mapping.

Journal: Human brain mapping

Status: code on request

[39077] doi:10.1007/s00018-022-04676-6 [paper, repository]

The rates of adult neurogenesis and oligodendrogenesis are linked to cell cycle regulation through p27-dependent gene repression of SOX2.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: paucabar/DHB-Venus (MIT)

Status: empty repository, 1 file readable

[39078] doi:10.1016/j.dib.2023.108893 [paper, data]

Metagenomic data reveals microbiome characteristics of culture-negative brain abscess samples.

Journal: Data in brief

Status: data only, 3 datasets cited

[39079] doi:10.1016/j.isci.2023.105955 [paper, repository]

My social comfort zone: Attachment anxiety shapes peripersonal and interpersonal space.

Journal: iScience

Authors' code: OSF tu4v9 (no license)

Status: empty repository

[39080] doi:10.1017/pen.2022.3 [paper, repository]

Perfectionism-related variations in error processing in a task with increased response selection complexity.

Journal: Personality neuroscience

Authors' code: OSF a2jbq (no license)

Status: code verified, 1 file readable, 4 matches

[39081] doi:10.1038/s41467-022-35397-w [paper, repository]

The Stroop effect involves an excitatory-inhibitory fronto-cerebellar loop.

Journal: Nature communications

Authors' code: Zenodo 7329617 (MIT)

Status: code verified, 1 file readable

[39082] doi:10.1038/s41467-023-35881-x [paper, data]

Annexin A1 is a polarity cue that directs mitotic spindle orientation during mammalian epithelial morphogenesis.

Journal: Nature communications

Status: data only, 2 datasets cited

[39083] doi:10.1038/s41598-022-25306-y [paper, repository]

Reproducibility of cerebellar involvement as quantified by consensus structural MRI biomarkers in advanced essential tremor.

Journal: Scientific reports

Authors' code: neurodatascience/ET_biomarker (MIT)

Status: code verified, 66 files readable, 8 matches

[39084] doi:10.1038/s41598-023-27663-8 [paper, data]

Differential gene expression in the contralateral hemisphere of the rat brain after focal ischemia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39085] doi:10.1038/s41598-023-27700-6 [paper, repository]

Single-nuclei transcriptomics enable detection of somatic variants in patient brain tissue.

Journal: Scientific reports

Authors' code: bedrosian-lab/5p3p_genotyping (no license)

Status: code verified, 12 files readable, 5 matches

[39086] doi:10.1073/pnas.2201699120 [paper, repository]

The synaptic organization in the <i>Caenorhabditis elegans</i> neural network suggests significant local compartmentalized computations.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: zaslab/Neurite-computations (no license)

Status: code verified, 11 files readable, 1 match

[39087] doi:10.1098/rsob.220200 [paper, repository]

Characterization of microglia behaviour in healthy and pathological conditions with image analysis tools.

Journal: Open biology

Authors' code: MariaCalvo-UB/Microglia_Phagocytosis (no license), embl-cba/microglia-morphometry (no license), git.embl.de/heriche/microglia_morphology (no license), doi:10.6084/m9.figshare.c.6359992 (no license)

Status: code verified, 46 files readable, 1 match

[39088] doi:10.1098/rsos.220786 [paper, repository]

How keratin cortex thickness affects iridescent feather colours.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6360025 (no license)

Status: code found, still to be checked

[39089] doi:10.1098/rspb.2022.2244 [paper, repository]

Isochrony and rhythmic interaction in ape duetting.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6350493 (no license)

Status: code found, still to be checked

[39090] doi:10.1126/sciadv.add8687 [paper, data]

Role of ventral subiculum neuronal ensembles in incubation of oxycodone craving after electric barrier-induced voluntary abstinence.

Journal: Science advances

Status: data only, 1 dataset cited

[39091] doi:10.1186/s12874-023-01837-4 [paper, repository]

Machine learning for predicting neurodegenerative diseases in the general older population: a cohort study.

Journal: BMC medical research methodology

Authors' code: lzhangLIH/Neuropred (no license)

Status: code verified, 6 files readable, 7 matches

[39092] doi:10.1186/s13064-022-00169-1 [paper, repository]

Lrig1 expression identifies quiescent stem cells in the ventricular-subventricular zone from postnatal development to adulthood and limits their persistent hyperproliferation.

Journal: Neural development

Authors' code: figshare 12501911 (CC-BY-4.0), figshare 13322357 (CC-BY-4.0), figshare 12555527 (CC-BY-4.0)

Status: code verified

[39093] doi:10.1186/s40478-022-01496-4 [paper, data]

Identifying new biomarkers of aggressive Group 3 and SHH medulloblastoma using 3D hydrogel models, single cell RNA sequencing and 3D OrbiSIMS imaging.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[39094] doi:10.1523/eneuro.0306-22.2022 [paper, repository]

Microglial Expression of the Wnt Signaling Modulator <i>DKK2</i> Differs between Human Alzheimer's Disease Brains and Mouse Neurodegeneration Models.

Journal: eNeuro

Authors' code: dominicaghaizu/imagejmacros (no license)

Status: empty repository, 1 file readable

[39095] doi:10.3389/fneur.2022.1086553 [paper, data]

Expression characteristics of circular RNA in human traumatic brain injury.

Journal: Frontiers in neurology

Status: data only, 3 datasets cited

[39096] doi:10.3389/fninf.2022.1032538 [paper, data]

Predicting &lt;i&gt;in vitro&lt;/i&gt; single-neuron firing rates upon pharmacological perturbation using Graph Neural Networks.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[39097] doi:10.3389/fnins.2022.1044372 [paper, repository]

Connectome topology of mammalian brains and its relationship to taxonomy and phylogeny.

Journal: Frontiers in neuroscience

Authors' code: faskowit/faskowitz2022mammals (BSD-3-Clause)

Status: code verified, 113 files readable, 10 matches

[39098] doi:10.3389/fonc.2022.1050756 [paper, data]

DUSP10 upregulation is a poor prognosticator and promotes cell proliferation and migration in glioma.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[39099] doi:10.3390/ijms24021428 [paper, repository]

Molecular Landscape of Tourette's Disorder.

Journal: International journal of molecular sciences

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 2 matches

[39100] doi:10.3390/ijms24021453 [paper, data]

Global Impairment of Immediate-Early Genes Expression in Rett Syndrome Models and Patients Linked to Myelination Defects.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39101] doi:10.3390/s23020857 [paper]

A Comparative Investigation of Automatic Speech Recognition Platforms for Aphasia Assessment Batteries.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[39102] doi:10.7554/elife.79488 [paper, repository]

MicroRNA-eQTLs in the developing human neocortex link miR-4707-3p expression to brain size.

Journal: eLife

Authors' code: mikelaff/mirna-eqtl-manuscript (no license)

Status: code verified, 482 files readable, 28 matches

Tuesday, 10 January 2023 (35 papers)

[39103] doi:10.1007/s10334-022-01059-7 [paper]

Towards functional spin-echo BOLD line-scanning in humans at 7T.

Journal: Magma (New York, N.Y.)

Status: code on request

[39104] doi:10.1016/j.cub.2022.12.026 [paper]

Functional integrity of visual coding following advanced photoreceptor degeneration.

Journal: Current biology : CB

Status: code on request

[39105] doi:10.1016/j.isci.2023.105950 [paper]

PACAP-PAC1 receptor inhibition is effective in opioid induced hyperalgesia and medication overuse headache models.

Journal: iScience

Status: code on request

[39106] doi:10.1016/j.redox.2023.102604 [paper, data]

Chemogenetic emulation of intraneuronal oxidative stress affects synaptic plasticity.

Journal: Redox biology

Status: data only, 1 dataset cited

[39107] doi:10.1038/s41467-022-35535-4 [paper, repository]

Decreased but diverse activity of cortical and thalamic neurons in consciousness-impairing rodent absence seizures.

Journal: Nature communications

Authors' code: BlumenfeldLab/McCafferty-et-al_2022 (no license)

Status: code verified, 44 files readable, 15 matches

[39108] doi:10.1038/s41467-022-35747-8 [paper, repository]

Introducing the Dendrify framework for incorporating dendrites to spiking neural networks.

Journal: Nature communications

Authors' code: Poirazi-Lab/dendrify (GPL-3.0), dendrify.readthedocs.io (no license), Zenodo 7442615 (other-open)

Status: code verified, 57 files readable, 16 matches

[39109] doi:10.1038/s41467-023-35822-8 [paper, repository]

Choice selective inhibition drives stability and competition in decision circuits.

Journal: Nature communications

Authors' code: engellab/selective-inhibition-models (no license)

Status: code verified, 25 files readable, 5 matches

[39110] doi:10.1038/s41598-022-25421-w [paper, repository]

Learning the dynamics of realistic models of C. elegans nervous system with recurrent neural networks.

Journal: Scientific reports

Authors' code: gmestre98/Celegans-ForwardCrawling-RNNs (MIT)

Status: code verified, 9 files readable, 1 match

[39111] doi:10.1038/s41598-022-27117-7 [paper]

Sensorimotor recalibration of postural control strategies occurs after whole body vibration.

Journal: Scientific reports

Status: code on request

[39112] doi:10.1038/s41598-022-27275-8 [paper, repository]

Partial wavelet coherence as a robust method for assessment of neurovascular coupling in neonates with hypoxic ischemic encephalopathy.

Journal: Scientific reports

Authors' code: timhermans/pwc (no license)

Status: code verified, 6 files readable, 2 matches

[39113] doi:10.1038/s41598-022-27302-8 [paper, repository]

NRN-EZ: an application to streamline biophysical modeling of synaptic integration using NEURON.

Journal: Scientific reports

Authors' code: scimemia/NRN-EZ (GPL-3.0), sites.google.com/site/scimemilab2013 (no license)

Status: code verified, 63 files readable, 4 matches

[39114] doi:10.1038/s41598-023-27527-1 [paper]

Suppression of seizure in childhood absence epilepsy using robust control of deep brain stimulation: a simulation study.

Journal: Scientific reports

Status: code on request

[39115] doi:10.1038/s41598-023-27533-3 [paper, data]

The importance of contrast features in rat vision.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39116] doi:10.1093/texcom/tgac050 [paper]

The role of visual association cortices during response selection processes in interference-modulated response stopping.

Journal: Cerebral cortex communications

Status: code on request

[39117] doi:10.1111/cns.14081 [paper, data]

Gut microbiota in brain tumors: An emerging crucial player.

Journal: CNS neuroscience & therapeutics

Status: data only, 2 datasets cited

[39118] doi:10.1117/1.jbo.28.1.016001 [paper]

Portable low-cost macroscopic mapping system for all-optical cardiac electrophysiology.

Journal: Journal of biomedical optics

Status: code on request

[39119] doi:10.1155/2023/2024237 [paper, repository]

Conditional TransGAN-Based Data Augmentation for PCB Electronic Component Inspection.

Journal: Computational intelligence and neuroscience

Authors' code: long-deep/pcb-detect (no license)

Status: code verified, 1 file readable, 1 match

[39120] doi:10.1177/26331055221146755 [paper, repository]

<i>Drosophila</i> Stat92E Signaling Following Pre-exposure to Ethanol.

Journal: Neuroscience insights

Authors' code: epetrucc/Stat92E-paper-Wilson-et-al-2022- (MIT)

Status: code verified, 3 files readable, 1 match

[39121] doi:10.1371/journal.pcbi.1010792 [paper, repository]

Spikebench: An open benchmark for spike train time-series classification.

Journal: PLoS computational biology

Authors' code: lzrvch/spikebench (MIT), lzrcvh/spikebench (no license)

Status: code verified, 24 files readable, 16 matches

[39122] doi:10.21037/atm-22-5756 [paper]

Machine learning screening for Parkinson's disease-related cuproptosis-related typing development and validation and exploration of personalized drugs for cuproptosis genes.

Journal: Annals of translational medicine

Status: data only

[39123] doi:10.21053/ceo.2022.01235 [paper]

Identification and Characterization of mRNA and lncRNA Expression Profiles in Age-Related Hearing Loss.

Journal: Clinical and experimental otorhinolaryngology

Status: data only

[39124] doi:10.3389/fbioe.2022.887898 [paper]

Data-driven approach to integrating genomic and behavioral preclinical traumatic brain injury research.

Journal: Frontiers in bioengineering and biotechnology

Status: data only

[39125] doi:10.3389/fimmu.2022.1074762 [paper, data]

Perioperative corticosteroid treatment impairs tumor-infiltrating dendritic cells in patients with newly diagnosed adult-type diffuse gliomas.

Journal: Frontiers in immunology

Status: data only, 3 datasets cited

[39126] doi:10.3389/fnbeh.2022.1033975 [paper, repository]

Leveraging genetic diversity in mice to inform individual differences in brain microstructure and memory.

Journal: Frontiers in behavioral neuroscience

Authors' code: SebastianoF/bruker2nifti (MIT)

Status: code verified, 25 files readable

[39127] doi:10.3389/fneur.2022.1051397 [paper, repository]

Image-to-image generative adversarial networks for synthesizing perfusion parameter maps from DSC-MR images in cerebrovascular disease.

Journal: Frontiers in neurology

Authors' code: prediction2020/DSC-to-perfusion (MIT)

Status: code verified, 9 files readable, 3 matches

[39128] doi:10.3389/fnhum.2022.1046277 [paper, repository]

Developmental differences in the perception of naturalistic human movements.

Journal: Frontiers in human neuroscience

Authors' code: parralab.org/isc (no license), CMU-Perceptual-Computing-Lab/openpose (BSD-2-Clause)

Status: code verified, 199 files readable

[39129] doi:10.3389/fnimg.2022.1070151 [paper, repository]

A functional MRI pre-processing and quality control protocol based on statistical parametric mapping (SPM) and MATLAB.

Journal: Frontiers in neuroimaging

Authors' code: Brain-Connectivity-Lab/Preprocessing_and_QC (GPL-3.0)

Status: code verified, 22 files readable, 8 matches

[39130] doi:10.3389/fnins.2022.1003984 [paper, data]

Empirical comparison of deep learning methods for EEG decoding.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[39131] doi:10.3389/fnmol.2022.1091498 [paper, data]

The roles of chemokines following intracerebral hemorrhage in animal models and humans.

Journal: Frontiers in molecular neuroscience

Status: data only, 3 datasets cited

[39132] doi:10.3389/fphys.2022.752900 [paper, repository]

Habituation of the stress response multiplex to repeated cold pressor exposure.

Journal: Frontiers in physiology

Authors' code: attlab/CPT_Adaptation (no license)

Status: code verified, 119 files readable, 12 matches

[39133] doi:10.3390/healthcare11020212 [paper, data]

A Deep Learning-Based Framework for Retinal Disease Classification.

Journal: Healthcare (Basel, Switzerland)

Status: data only, 1 dataset cited

[39134] doi:10.3390/ijms24021350 [paper, data]

Functional Characterization of a Spectrum of Novel Romano-Ward Syndrome <i>KCNQ1</i> Variants.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39135] doi:10.3390/ijms24021387 [paper, data]

Neuronal Dot1l Activity Acts as a Mitochondrial Gene-Repressor Associated with Human Brain Aging via H3K79 Hypermethylation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39136] doi:10.7150/thno.80307 [paper, data]

TCRαβ⁺NK1.1^-CD4^-CD8^- double-negative T cells inhibit central and peripheral inflammation and ameliorate ischemic stroke in mice.

Journal: Theranostics

Status: data only, 2 datasets cited

[39137] doi:10.7717/peerj.14341 [paper, data]

Flexor hallucis brevis motor unit behavior in response to moderate increases in rate of force development.

Journal: PeerJ

Status: data only, 1 dataset cited

Monday, 9 January 2023 (25 papers)

[39138] doi:10.1007/s12021-022-09616-0 [paper, repository]

NiftyPAD - Novel Python Package for Quantitative Analysis of Dynamic PET Data.

Journal: Neuroinformatics

Authors' code: amypad/niftypad (Apache-2.0)

Status: code verified, 24 files readable, 3 matches

[39139] doi:10.1038/s41537-022-00330-z [paper, repository]

Gray matter volume drives the brain age gap in schizophrenia: a SHAP study.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: tobias-kaufmann/brainage (no license), Ballester/brain-age-shap (no license)

Status: code verified, 4 files readable, 1 match

[39140] doi:10.1038/s41593-022-01227-x [paper, repository]

Behavioral origin of sound-evoked activity in mouse visual cortex.

Journal: Nature neuroscience

Authors' code: petersaj/AP_histology (GPL-3.0), SainsburyWellcomeCentre/BakingTray (LGPL-3.0), Zenodo 3631609 (LGPL-3.0), cbimbo/Bimbard2022 (GPL-3.0), Zenodo 7253394 (other-open), swc-advanced-microscopy/bakingtray (LGPL-3.0)

Status: code verified, 1,216 files readable, 18 matches

[39141] doi:10.1038/s41598-022-24940-w [paper, repository]

Patient-specific identification of genome-wide DNA-methylation differences between intracranial and extracranial melanoma metastases.

Journal: Scientific reports

Authors' code: TheresaKraft/MelBrainSys_methylation (CC-BY-4.0)

Status: code verified, 11 files readable, 7 matches

[39142] doi:10.1038/s41598-022-26183-1 [paper]

Analysis of cerebral glucose metabolism following experimental subarachnoid hemorrhage over 7 days.

Journal: Scientific reports

Status: code on request

[39143] doi:10.1073/pnas.2208348120 [paper, repository]

Sensitive bacterial V&lt;sub&gt;m&lt;/sub&gt; sensors revealed the excitability of bacterial V&lt;sub&gt;m&lt;/sub&gt; and its role in antibiotic tolerance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jinxin-jx/ImageProcessing (no license)

Status: code verified, 4 files readable

[39144] doi:10.1186/s12871-022-01962-5 [paper, data]

Goal-Directed Fluid Therapy and major postoperative complications in elective craniotomy. A retrospective analysis of a before-after multicentric study.

Journal: BMC anesthesiology

Status: data only, 1 dataset cited

[39145] doi:10.1186/s12872-022-03015-8 [paper]

Electrophysiology lab efficiency comparison between cryoballoon and point-by-point radiofrequency ablation: a German sub-analysis of the FREEZE Cohort study.

Journal: BMC cardiovascular disorders

Status: code on request

[39146] doi:10.1186/s12987-022-00404-1 [paper, data]

Apicobasal transferrin receptor localization and trafficking in brain capillary endothelial cells.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[39147] doi:10.1186/s13195-022-01121-5 [paper, data]

Hormone replacement therapy is associated with improved cognition and larger brain volumes in at-risk APOE4 women: results from the European Prevention of Alzheimer's Disease (EPAD) cohort.

Journal: Alzheimer's research & therapy

Status: data only, 5 datasets cited

[39148] doi:10.1186/s13195-023-01162-4 [paper, data]

Molecular insights into sex-specific metabolic alterations in Alzheimer's mouse brain using multi-omics approach.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[39149] doi:10.1523/eneuro.0335-22.2022 [paper, repository]

A Layered, Hybrid Machine Learning Analytic Workflow for Mouse Risk Assessment Behavior.

Journal: eNeuro

Authors' code: hmmlearn/hmmlearn (BSD-3-Clause)

Status: code verified, 35 files readable, 1 match

[39150] doi:10.1523/eneuro.0452-22.2022 [paper, data]

Water-Reaching Platform for Longitudinal Assessment of Cortical Activity and Fine Motor Coordination Defects in a Huntington Disease Mouse Model.

Journal: eNeuro

Status: code on request, 1 dataset cited

[39151] doi:10.15252/embr.202255770 [paper, repository]

A force balance model for a cell size-dependent meiotic nuclear oscillation in fission yeast.

Journal: EMBO reports

Authors' code: supp:PMC9986818/EMBR-24-e55770-s006.zip (no license), supp:PMC9986818/EMBR-24-e55770-s004.zip (no license)

Status: code verified, 2 files readable, 4 matches

[39152] doi:10.18632/aging.204481 [paper, data]

Effects of NBP on postoperative cognitive dysfunction in rats via Nrf 2/ARE pathway.

Journal: Aging

Status: data only, 1 dataset cited

[39153] doi:10.3389/falgy.2022.1019265 [paper, repository]

Neuromapping olfactory stimulation using magnetoencephalography - visualizing smell, a proof-of-concept study.

Journal: Frontiers in allergy

Authors' code: dropbox.com/scl/fo (no license)

Status: code verified

[39154] doi:10.3389/fmicb.2022.1050352 [paper, data]

Surrogate fostering of mice prevents prenatal estradiol-induced insulin resistance <i>via</i> modulation of the microbiota-gut-brain axis.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[39155] doi:10.3389/fnana.2022.1087949 [paper, data]

Translational control in cortical development.

Journal: Frontiers in neuroanatomy

Status: data only, 1 dataset cited

[39156] doi:10.3389/fnbot.2022.1041410 [paper, repository]

Emergent dynamics in a robotic model based on the <i>Caenorhabditis elegans</i> connectome.

Journal: Frontiers in neurorobotics

Authors' code: Connectome/GoPiGo (GPL-2.0)

Status: code verified, 7 files readable, 3 matches

[39157] doi:10.3389/fnimg.2022.974927 [paper, repository]

Canonical template tracking: Measuring the activation state of specific neural representations.

Journal: Frontiers in neuroimaging

Authors' code: AnaPalenciano/Canonical_Template_Tracking (no license)

Status: code verified, 7 files readable

[39158] doi:10.3389/fnins.2022.1025492 [paper, data]

Assessing atypical brain functional connectivity development: An approach based on generative adversarial networks.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[39159] doi:10.3390/ijerph20021171 [paper, data]

Impaired Non-Selective Response Inhibition in Obsessive-Compulsive Disorder.

Journal: International journal of environmental research and public health

Status: data only, 1 dataset cited

[39160] doi:10.3390/ijms24021267 [paper, data]

Increased Expression of the Δ133p53β Isoform Enhances Brain Metastasis.

Journal: International journal of molecular sciences

Status: data only, 4 datasets cited

[39161] doi:10.3390/jcm12020538 [paper, repository]

HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network.

Journal: Journal of clinical medicine

Authors' code: jia-604/HMNet (no license)

Status: empty repository

[39162] doi:10.7554/elife.84029 [paper, repository]

Targeted sensors for glutamatergic neurotransmission.

Journal: eLife

Authors' code: agplested/SAFT (MIT), Zenodo 7512561 (CC-BY-4.0)

Status: code verified, 13 files readable, 2 matches

Sunday, 8 January 2023 (3 papers)

[39163] doi:10.1186/s12915-022-01505-x [paper, repository]

Olfactory sensitivity differentiates morphologically distinct worker castes in Camponotus floridanus.

Journal: BMC biology

Authors' code: figshare 21672965 (CC0-1.0)

Status: code verified

[39164] doi:10.1186/s12916-022-02698-2 [paper, repository]

Predicting mortality in acutely hospitalised older patients: the impact of model dimensionality.

Journal: BMC medicine

Authors' code: WCHN/CTseg (GPL-3.0)

Status: code verified, 44 files readable, 4 matches

[39165] doi:10.1186/s41235-022-00457-8 [paper, data]

Using global feedback to induce learning of gist of abnormality in mammograms.

Journal: Cognitive research: principles and implications

Status: data only, 1 dataset cited

Saturday, 7 January 2023 (8 papers)

[39166] doi:10.1016/j.heliyon.2023.e12881 [paper, data]

Multiple brain infarctions and endomyocarditis in ANCA-negative eosinophilic granulomatosis with polyangiitis.

Journal: Heliyon

Status: data only, 1 dataset cited

[39167] doi:10.1016/j.isci.2023.105947 [paper, repository]

Tissue-type plasminogen activator induces conditioned receptive field plasticity in the mouse auditory cortex.

Journal: iScience

Authors' code: alex2thiele/tpa (no license)

Status: dead link

[39168] doi:10.1016/j.jpha.2022.12.002 [paper, data]

Celastrol targeting Nedd4 reduces Nrf2-mediated oxidative stress in astrocytes after ischemic stroke.

Journal: Journal of pharmaceutical analysis

Status: data only, 1 dataset cited

[39169] doi:10.1016/j.nicl.2023.103319 [paper, repository]

Age-level bias correction in brain age prediction.

Journal: NeuroImage. Clinical

Authors' code: saulgoodenough/pad_bias_correction (no license)

Status: dead link

[39170] doi:10.1038/s41598-022-27248-x [paper, repository]

Graph theoretical measures of fast ripple networks improve the accuracy of post-operative seizure outcome prediction.

Journal: Scientific reports

Authors' code: pennmem/neurorad_pipeline (GPL-3.0), shenweiss/publishedcode (no license)

Status: code verified, 153 files readable, 9 matches

[39171] doi:10.1038/s41598-022-27349-7 [paper, repository]

Evolutionary conservation and diversification of auditory neural circuits that process courtship songs in Drosophila.

Journal: Scientific reports

Authors' code: datadryad.org (no license), doi:10.5061/dryad.tdz08kq3f (no license), Zenodo 7559659 (MIT)

Status: code verified, 10 files readable, 2 matches

[39172] doi:10.1186/s13024-022-00592-2 [paper, data]

Genome-wide association study of brain biochemical phenotypes reveals distinct genetic architecture of Alzheimer's disease related proteins.

Journal: Molecular neurodegeneration

Status: data only, 5 datasets cited

[39173] doi:10.3390/ijms24021200 [paper]

Transcriptomic Analysis of Glycosylation and Neuroregulatory Pathways in Rodent Models in Response to Psychedelic Molecules.

Journal: International journal of molecular sciences

Status: data only

Friday, 6 January 2023 (32 papers, 27 on this page)

[39174] doi:10.1007/s00018-022-04668-6 [paper]

dMyc-dependent upregulation of CD98 amino acid transporters is required for Drosophila brain tumor growth.

Journal: Cellular and molecular life sciences : CMLS

Status: data only

[39175] doi:10.1016/j.dcn.2023.101196 [paper, repository]

Why weight? Analytic approaches for large-scale population neuroscience data.

Journal: Developmental cognitive neuroscience

Authors' code: OSF d94kq (no license)

Status: code verified, 4 files readable, 12 matches

[39176] doi:10.1016/j.mrl.2022.12.003 [paper, repository]

Diffusivity-limited q-space trajectory imaging.

Journal: Magnetic resonance letters

Authors' code: DenebBoito/qtiplus (GPL-3.0), markus-nilsson/md-dmri (other)

Status: code verified, 756 files readable, 2 matches

[39177] doi:10.1016/j.tranon.2023.101616 [paper, data]

The clinical application of ⁶⁸Ga-PSMA PET/CT and regulating mechanism of PSMA expression in patients with brain metastases of lung cancer.

Journal: Translational oncology

Status: data only, 1 dataset cited

[39178] doi:10.1038/s41467-022-35494-w [paper, repository]

Molecular subtypes of ALS are associated with differences in patient prognosis.

Journal: Nature communications

Authors' code: BSmithLab/ALSPatientStratification (no license), plaisier-lab/U5_hNSC_Neural_G0 (GPL-3.0), Zenodo 7296869 (other-open)

Status: code verified, 95 files readable, 40 matches

[39179] doi:10.1038/s41467-022-35656-w [paper, data]

Adaptive coding across visual features during free-viewing and fixation conditions.

Journal: Nature communications

Status: code on request, 1 dataset cited

[39180] doi:10.1038/s41467-022-35738-9 [paper]

Computational conjugate adaptive optics microscopy for longitudinal through-skull imaging of cortical myelin.

Journal: Nature communications

Status: code on request

[39181] doi:10.1038/s41467-022-35749-6 [paper, data]

Inhibition of histone methyltransferase Smyd3 rescues NMDAR and cognitive deficits in a tauopathy mouse model.

Journal: Nature communications

Status: data only, 1 dataset cited

[39182] doi:10.1038/s41467-022-35756-7 [paper]

Conformational plasticity of NaK2K and TREK2 potassium channel selectivity filters.

Journal: Nature communications

Status: code on request

[39183] doi:10.1038/s41598-022-27372-8 [paper]

Specific AAV2/PHP.eB-mediated gene transduction of CA2 pyramidal cells via injection into the lateral ventricle.

Journal: Scientific reports

Status: code on request

[39184] doi:10.1038/s41598-023-27531-5 [paper, repository]

Expression of LIM domain-binding 3 (LDB3), a striated muscle Z-band alternatively spliced PDZ-motif protein in the nervous system.

Journal: Scientific reports

Authors' code: TomSkelly/MatchAnnot (GPL-3.0)

Status: code verified, 21 files readable, 1 match

[39185] doi:10.1126/sciadv.abq0844 [paper, repository]

Variant-to-gene mapping followed by cross-species genetic screening identifies GPI-anchor biosynthesis as a regulator of sleep.

Journal: Science advances

Authors' code: kundajelab/atac_dnase_pipelines (BSD-3-Clause)

Status: code verified, 30 files readable

[39186] doi:10.11606/s1518-8787.2022056004134 [paper, data]

The association between vitamin D and BDNF on cognition in older adults in Southern Brazil.

Journal: Revista de saude publica

Status: data only, 2 datasets cited

[39187] doi:10.1186/s12974-022-02677-7 [paper]

Protein kinase B (AKT) upregulation and Thy-1-α_vβ₃ integrin-induced phosphorylation of Connexin43 by activated AKT in astrogliosis.

Journal: Journal of neuroinflammation

Status: data only

[39188] doi:10.1371/journal.pcbi.1010758 [paper, data]

RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[39189] doi:10.1371/journal.pcbi.1010784 [paper, repository]

One dimensional approximations of neuronal dynamics reveal computational strategy.

Journal: PLoS computational biology

Authors' code: OSF bge2n (no license), proektlab/LOOPER (MIT)

Status: code verified, 64 files readable, 2 matches

[39190] doi:10.1371/journal.pcbi.1010818 [paper, repository]

A quantitative model for human neurovascular coupling with translated mechanisms from animals.

Journal: PLoS computational biology

Authors' code: Podde1/A-quantitative-model-for-human-neurovascular-coupling-with-translated-mechanisms-from-animals (no license)

Status: code verified, 814 files readable, 4 matches

[39191] doi:10.1371/journal.pone.0279814 [paper, data]

Neural response to sad autobiographical recall and sad music listening post recall reveals distinct brain activation in alpha and gamma bands.

Journal: PloS one

Status: data only, 1 dataset cited

[39192] doi:10.1371/journal.pone.0279964 [paper, data]

β-patchoulene alleviates cognitive dysfunction in a mouse model of sepsis associated encephalopathy by inhibition of microglia activation through Sirt1/Nrf2 signaling pathway.

Journal: PloS one

Status: data only, 1 dataset cited

[39193] doi:10.1371/journal.pone.0280129 [paper, data]

Reduced isometric knee extensor force following anodal transcranial direct current stimulation of the ipsilateral motor cortex.

Journal: PloS one

Status: data only, 1 dataset cited

[39194] doi:10.1371/journal.pone.0280215 [paper, data]

An exploratory study of functional brain activation underlying response inhibition in major depressive disorder and borderline personality disorder.

Journal: PloS one

Status: data only, 1 dataset cited

[39195] doi:10.3389/fbioe.2022.945474 [paper, data]

Whole transcriptomic analysis of mesenchymal stem cells cultured in Nichoid micro-scaffolds.

Journal: Frontiers in bioengineering and biotechnology

Status: data only, 1 dataset cited

[39196] doi:10.3389/fmolb.2022.1080140 [paper, data]

Glutathione S-transferases Control astrocyte activation and neuronal health during neuroinflammation.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[39197] doi:10.3389/fnagi.2022.1064667 [paper, repository]

Progressive structural and covariance connectivity abnormalities in patients with Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Authors' code: Yaqiongxiao/Progressive.changes.GM.AD (no license)

Status: code verified, 5 files readable

[39198] doi:10.3389/fnins.2022.1086994 [paper, data]

Loss of CAMK2G affects intrinsic and motor behavior but has minimal impact on cognitive behavior.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[39199] doi:10.3389/fnmol.2022.948456 [paper, repository]

Cell type-specific histone acetylation profiling of Alzheimer's disease subjects and integration with genetics.

Journal: Frontiers in molecular neuroscience

Authors' code: pfenninglab/ad_h3k27ac_3ct_release (no license), kundajelab/chipseq_pipeline (BSD-3-Clause)

Status: code verified, 69 files readable, 17 matches

[39200] doi:10.3390/biomedicines11010149 [paper, data]

Hybridized Deep Learning Approach for Detecting Alzheimer's Disease.

Journal: Biomedicines

Status: data only, 1 dataset cited

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