Every paper, by date: page 177

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 177 of 200: 1 January 2023 to 22 December 2022.

Sunday, 1 January 2023 (170 papers, 59 on this page)

[39425] doi:10.1162/netn_a_00286 [paper, data]

Sex differences in multilayer functional network topology over the course of aging in 37543 UK Biobank participants.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[39426] doi:10.1167/jov.23.1.10 [paper, repository]

Alterations in working memory maintenance of fearful face distractors in depressed participants: An ERP study.

Journal: Journal of vision

Authors' code: OSF casz7 (no license)

Status: empty repository, 1 file readable

[39427] doi:10.1167/jov.23.1.5 [paper, repository]

Ensemble averaging: What can we learn from skewed feature distributions?

Journal: Journal of vision

Authors' code: OSF enwym (no license)

Status: code verified, 6 files readable, 4 matches

[39428] doi:10.1177/09636897231154579 [paper, data]

Human Menstrual Blood-Derived Endometrial Stem Cells Promote Functional Recovery by Improving the Inflammatory Microenvironment in a Mouse Spinal Cord Injury Model.

Journal: Cell transplantation

Status: data only, 1 dataset cited

[39429] doi:10.1177/14791641221147533 [paper, data]

Responses of retinal and brain microvasculature to streptozotocin induced diabetes revealed by global expression profiling.

Journal: Diabetes & vascular disease research

Status: data only, 1 dataset cited

[39430] doi:10.1177/15330338231218218 [paper, data]

miRNA-130a-3p/CPEB4 Axis Modulates Glioblastoma Growth and Progression.

Journal: Technology in cancer research & treatment

Status: data only, 1 dataset cited

[39431] doi:10.1177/17448069221106167 [paper, data]

Transcriptome analysis reveals dysregulation of inflammatory and neuronal function in dorsal root ganglion of paclitaxel-induced peripheral neuropathy rats.

Journal: Molecular pain

Status: data only, 1 dataset cited

[39432] doi:10.1177/17448069231174315 [paper, data]

Peripheral sensory neurons and non-neuronal cells express functional Piezo1 channels.

Journal: Molecular pain

Status: data only, 1 dataset cited

[39433] doi:10.1177/17590914231157974 [paper, data]

Age-Associated Upregulation of Glutamate Transporters and Glutamine Synthetase in Senescent Astrocytes In Vitro and in the Mouse and Human Hippocampus.

Journal: ASN neuro

Status: data only, 1 dataset cited

[39434] doi:10.1177/20417314221145789 [paper, data]

Targeting connexin 43 expression via scaffold mediated delivery of antisense oligodeoxynucleotide preserves neurons, enhances axonal extension, reduces astrocyte and microglial activation after spinal cord injury.

Journal: Journal of tissue engineering

Status: data only, 1 dataset cited

[39435] doi:10.1177/20552076231169846 [paper, data]

An integrated targeted metabolomics and network pharmacology approach to exploring the mechanism of ellagic acid against sleep deprivation-induced memory impairment and anxiety.

Journal: Digital health

Status: data only, 1 dataset cited

[39436] doi:10.1177/20552076231173569 [paper, data]

Wearable sensors and features for diagnosis of neurodegenerative diseases: A systematic review.

Journal: Digital health

Status: data only, 1 dataset cited

[39437] doi:10.1177/23312165221148035 [paper, repository]

Adapting to the Sound of Music - Development of Music Discrimination Skills in Recently Implanted CI Users.

Journal: Trends in hearing

Authors' code: alberteseeberg/Adapting_music (no license)

Status: code verified, 4 files readable

[39438] doi:10.1177/23312165231201020 [paper, repository]

Toward a Unified Theory of the Reference Frame of the Ventriloquism Aftereffect.

Journal: Trends in hearing

Authors' code: PCL-lab/dHEC-model (CC0-1.0)

Status: code verified, 11 files readable

[39439] doi:10.1177/23982128231191046 [paper, repository]

Apolipoprotein E isoform does not influence trans-synaptic spread of tau pathology in a mouse model.

Journal: Brain and neuroscience advances

Authors' code: lewiswilkins/Array-Tomography-Tool (GPL-3.0), Spires-Jones-Lab (no license), supp:PMC10433884/sj-Rmd-2-bna-10.1177_23982128231191046.Rmd (no license), supp:PMC10433884/sj-Rmd-4-bna-10.1177_23982128231191046.Rmd (no license)

Status: code verified, 39 files readable, 1 match

[39440] doi:10.1177/25152564231211409 [paper, data]

A Role for Two-Pore Channel Type 2 (TPC2)-Mediated Regulation of Membrane Contact Sites During Zebrafish Notochord Biogenesis?

Journal: Contact (Thousand Oaks (Ventura County, Calif.))

Status: data only, 1 dataset cited

[39441] doi:10.12688/f1000research.126732.3 [paper, repository]

Regulation of MAP2, GFAP, and calcium in the CA3 Region Following Kainic Acid Exposure to  organotypic hippocampal slice culture.

Journal: F1000Research

Authors' code: figshare 28045007 (CC-BY-4.0)

Status: empty repository

[39442] doi:10.12688/f1000research.127413.2 [paper, repository]

Effect of ACTH4-10Pro8-Gly9-Pro10 on anti-inflammatory cytokine (IL-4, IL-10, IL-13) expression in acute spinal cord injury models (male Sprague Dawley rats).

Journal: F1000Research

Authors' code: Zenodo 7568360 (CC-BY-4.0)

Status: empty repository

[39443] doi:10.12688/f1000research.132627.3 [paper, repository]

Integrated re-analysis of transcriptomic and proteomic datasets reveals potential mechanisms for Zika viral-based oncolytic therapy in neuroblastoma.

Journal: F1000Research

Authors' code: FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 31 files readable, 1 match

[39444] doi:10.12688/f1000research.138354.2 [paper, repository]

Validation and <i>in vivo</i> characterization of research antibodies for Moesin, CD44, Midkine, and sFRP-1.

Journal: F1000Research

Authors' code: openlabnotebooks.org/in-vivo-characterization-of-antibodies-directed-against-treat-ad-target-proteins-in-mouse-model-of-ad-pathology (no license), Zenodo 8160965 (CC-BY-4.0), Zenodo 4730966 (CC-BY-4.0)

Status: code verified

[39445] doi:10.12688/f1000research.138436.2 [paper, data]

Analysis of <i>C9orf72</i> repeat expansions in Georgian patients with Amyotrophic lateral sclerosis (ALS).

Journal: F1000Research

Status: data only, 1 dataset cited

[39446] doi:10.12688/f1000research.139515.2 [paper, data]

Correlation of age with the size of subcortical nuclei of the brain and its implication in degenerative disease: A magnetic resonance imaging study.

Journal: F1000Research

Status: data only, 2 datasets cited

[39447] doi:10.12688/f1000research.139867.2 [paper, repository]

A guide to selecting high-performing antibodies for amyloid-beta precursor protein for use in Western Blot, immunoprecipitation and immunofluorescence.

Journal: F1000Research

Authors' code: Zenodo 7971926 (CC-BY-4.0)

Status: empty repository

[39448] doi:10.12688/f1000research.140718.2 [paper, data]

Comparison between premortem histopathology findings in rats with and without traumatic brain injury: prospective application in forensic medicine.

Journal: F1000Research

Status: data only, 2 datasets cited

[39449] doi:10.12688/hrbopenres.13773.2 [paper, repository]

A scoping review protocol of the rehabilitation needs of people with brain tumours.

Journal: HRB open research

Authors' code: OSF es2wa (no license)

Status: empty repository

[39450] doi:10.12688/hrbopenres.13802.2 [paper, data]

Association between intrapartum fetal pulse oximetry and adverse perinatal and long-term outcomes: a systematic review and meta-analysis protocol.

Journal: HRB open research

Status: data only, 2 datasets cited

[39451] doi:10.12688/openreseurope.15775.2 [paper, repository]

Parametrizing analog multi-compartment neurons with genetic algorithms.

Journal: Open research Europe

Authors' code: electronicvisions/model-paper-mc-genetic (LGPL-2.1), Zenodo 14046603 (other-open), Zenodo 8109123 (other-open)

Status: code verified, 11 files readable, 3 matches

[39452] doi:10.12688/wellcomeopenres.19819.3 [paper, repository]

Statistical analysis plan for the Petal trial: the effects of parental touch on relieving acute procedural pain in neonates.

Journal: Wellcome open research

Authors' code: OSF 846p7 (no license)

Status: empty repository

[39453] doi:10.1503/jpn.220147 [paper, data]

Sex-specific transcriptional signatures in the medial prefrontal cortex underlying sexually dimorphic behavioural responses to stress in rats.

Journal: Journal of psychiatry & neuroscience : JPN

Status: data only, 1 dataset cited

[39454] doi:10.20900/agmr20230010 [paper, repository]

Challenges in Identifying Individualized Brain Biomarkers of Late Life Depression.

Journal: Advances in geriatric medicine and research

Authors' code: OSF w54da (no license)

Status: empty repository

[39455] doi:10.2174/1567205020666230808122643 [paper]

Neural Oscillation Disorder in the Hippocampal CA1 Region of Different Alzheimer's Disease Mice.

Journal: Current Alzheimer research

Status: code on request

[39456] doi:10.2174/1570159x20666220411083213 [paper]

Titration of Pharmacological Responses in ICU Patients by Quantified EEG.

Journal: Current neuropharmacology

Status: code on request

[39457] doi:10.2174/1570159x21666221207091209 [paper]

Sex, Age, and Regional Differences in <i>CHRM1</i> and <i>CHRM3</i> Genes Expression Levels in the Human Brain Biopsies: Potential Targets for Alzheimer's Disease-related Sleep Disturbances.

Journal: Current neuropharmacology

Status: data only

[39458] doi:10.24272/j.issn.2095-8137.2022.254 [paper, repository]

Defects and asymmetries in the visual pathway of non-human primates with natural strabismus and amblyopia.

Journal: Zoological research

Authors' code: LFVZYM/ShengLiuLab (no license)

Status: code verified, 17 files readable

[39459] doi:10.2478/joeb-2023-0009 [paper, data]

Advancing biomedical engineering: Leveraging Hjorth features for electroencephalography signal analysis.

Journal: Journal of electrical bioimpedance

Status: data only, 1 dataset cited

[39460] doi:10.3233/jad-215685 [paper, data]

Effects of Remote Expressive Arts Program in Older Adults with Mild Cognitive Impairment: A Randomized Controlled Trial.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[39461] doi:10.3233/jad-220535 [paper, repository]

Obesity-Associated Neurodegeneration Pattern Mimics Alzheimer's Disease in an Observational Cohort Study.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: FilipMorys/AD-Obesity (no license), frantisekvasa/rotate_parcellation (MIT)

Status: code verified, 10 files readable

[39462] doi:10.3233/jad-220608 [paper, data]

Associations Between Insulin-Like Growth Factor-1 and Resting-State Functional Connectivity in Cognitively Unimpaired Midlife Adults.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[39463] doi:10.3233/jad-220848 [paper, data]

Accumulation of pTau231 at the Postsynaptic Density in Early Alzheimer's Disease.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[39464] doi:10.3233/jad-220851 [paper, repository]

FMRI Complexity Correlates with Tau-PET and Cognitive Decline in Late-Onset and Autosomal Dominant Alzheimer's Disease.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: kayjann/complexity (no license)

Status: code verified, 39 files readable

[39465] doi:10.3233/jad-221192 [paper, data]

Relationship of Muscle Apolipoprotein E Expression with Markers of Cellular Stress, Metabolism, and Blood Biomarkers in Cognitively Healthy and Impaired Older Adults.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[39466] doi:10.3233/jad-221284 [paper, repository]

Extracellular Tau Oligomers Damage the Axon Initial Segment.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: mariekekjones/Alzheimer_AIS_data_analysis (no license)

Status: code verified, 3 files readable

[39467] doi:10.3233/jad-230078 [paper, data]

Aberrant Expression of GABA-Related Genes in the Hippocampus of 3xTg-AD Model Mice from the Early to End Stages of Alzheimer's Disease.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[39468] doi:10.3233/jad-230124 [paper, repository]

Coupling Between Hippocampal Parenchymal Fraction and Cortical Grey Matter Atrophy at Different Stages of Cognitive Decline.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: Yaqiongxiao/HPF.effects.AD (no license)

Status: empty repository, 1 file readable

[39469] doi:10.3233/jpd-223454 [paper]

Transcriptome Analysis Reveals a Two-Gene Signature Links to Motor Progression and Alterations of Immune Cells in Parkinson's Disease.

Journal: Journal of Parkinson's disease

Status: data only

[39470] doi:10.3233/jpd-223480 [paper, repository]

Implicit Motor Sequence Learning in People with Mild to Moderate Parkinson's Disease: Behavior and Related Brain Function.

Journal: Journal of Parkinson's disease

Authors' code: OSF abprn (no license)

Status: code verified, 8 files readable, 3 matches

[39471] doi:10.3233/jpd-223568 [paper, repository]

Distinct Patterns of Gene Expression Changes in the Colon and Striatum of Young Mice Overexpressing Alpha-Synuclein Support Parkinson's Disease as a Multi-System Process.

Journal: Journal of Parkinson's disease

Authors' code: videlock/Thy1-haSyn-Gut-Brain (MIT), videlock/SeahorseR (MIT)

Status: code verified, 56 files readable, 7 matches

[39472] doi:10.3233/jpd-225113 [paper, repository]

Effects of Very Low- and High-Frequency Subthalamic Stimulation on Motor Cortical Oscillations During Rhythmic Lower-Limb Movements in Parkinson's Disease Patients.

Journal: Journal of Parkinson's disease

Authors' code: sourceforge.net/dbsfilt (no license)

Status: code verified

[39473] doi:10.32598/bcn.2021.3542.1 [paper, repository]

Human Olfactory Ecto-mesenchymal Stem Cells Displaying Schwann-cell-like Phenotypes and Promoting Neurite Outgrowth <i>in Vitro</i>.

Journal: Basic and clinical neuroscience

Authors' code: en.iums.ac.ir (no license)

Status: dead link

[39474] doi:10.33696/signaling.4.102 [paper, data]

Depleting Cellular Retinoic Acid Binding Protein 1 Impairs UPR^mt.

Journal: Journal of cellular signaling

Status: data only, 2 datasets cited

[39475] doi:10.3988/jcn.2023.19.1.12 [paper, data]

Update on the Epidemiology, Pathogenesis, and Biomarkers of Cerebral Autosomal Dominant Arteriopathy With Subcortical Infarcts and Leukoencephalopathy.

Journal: Journal of clinical neurology (Seoul, Korea)

Status: data only, 1 dataset cited

[39476] doi:10.4196/kjpp.2023.27.1.85 [paper, data]

Age-dependent expression of ion channel genes in rat.

Journal: The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology

Status: data only, 1 dataset cited

[39477] doi:10.5935/0004-2749.20230004 [paper, data]

Corneal Perforation associated with "Silent Brain Syndrome".

Journal: Arquivos brasileiros de oftalmologia

Status: data only, 2 datasets cited

[39478] doi:10.5935/0004-2749.20230012 [paper, data]

Myelin oligodendrocyte glycoprotein antibody-associated optic neuritis: an update.

Journal: Arquivos brasileiros de oftalmologia

Status: data only, 2 datasets cited

[39479] doi:10.7150/thno.74324 [paper, data]

Kruppel-like factor 2 contributes to blood-spinal cord barrier integrity and functional recovery from spinal cord injury by augmenting autophagic flux.

Journal: Theranostics

Status: data only, 1 dataset cited

[39480] doi: [paper, repository]

Assessing cortical features in early stage ASD children

Journal: Frontiers in psychiatry

Authors' code: rpomponio/neuroHarmonize (MIT)

Status: code verified, 12 files readable

[39481] doi: [paper]

Real-time multimodal sensory detection using widefield hippocampal calcium imaging

Journal: Communications engineering

Status: code on request

[39482] doi: [paper, repository]

Towards automated sleep-stage classification for adaptive deep brain stimulation targeting sleep in patients with Parkinson’s disease

Journal: Communications engineering

Authors' code: UH3-RestoreSleepPD/sleep_net (MPL-2.0)

Status: code verified, 4 files readable

[39483] doi: [paper, repository]

A data assimilation method to track excitation-inhibition balance change using scalp EEG

Journal: Communications engineering

Authors' code: Zenodo 10109709 (CC-BY-4.0), mygit-yokoyamahiroshi/eeg_vbcenkf_mei_est (GPL-3.0)

Status: code verified, 17 files readable, 5 matches

Saturday, 31 December 2022 (9 papers)

[39484] doi:10.1002/mrm.29574 [paper, repository]

Accelerated and quantitative three-dimensional molecular MRI using a generative adversarial network.

Journal: Magnetic resonance in medicine

Authors' code: kherz/pulseq-cest-library (no license), figshare 20346369 (CC-BY-4.0), jweigandwhittier/GAN-ST (no license)

Status: code verified, 86 files readable, 3 matches

[39485] doi:10.1038/s41592-022-01687-w [paper, repository]

Nonnegative spatial factorization applied to spatial genomics.

Journal: Nature methods

Authors' code: nbviewer.jupyter.org/github/biofam (no license), willtownes/nsf-paper (LGPL-3.0), willtownes/spatial-factorization-py (LGPL-3.0), Zenodo 7130878 (other-open), Zenodo 7130877 (other-open)

Status: code verified, 119 files readable, 11 matches

[39486] doi:10.1038/s41598-022-27199-3 [paper, data]

Identification and analysis of odorant receptors expressed in the two main olfactory organs, antennae and palps, of Schistocerca americana.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39487] doi:10.1038/s41598-022-27293-6 [paper, data]

Chromatin remodeler CHD7 targets active enhancer region to regulate cell type-specific gene expression in human neural crest cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39488] doi:10.1093/nargab/lqac095 [paper, repository]

scAVENGERS: a genotype-based deconvolution of individuals in multiplexed single-cell ATAC-seq data without reference genotypes.

Journal: NAR genomics and bioinformatics

Authors' code: 10XGenomics/cellranger-atac (MIT), samtools/samtools (MIT), 10XGenomics/subset-bam (MIT), wheaton5/souporcell (MIT), kaistcbfg/scAVENGERS (no license), Zenodo 7408717 (other-open)

Status: code verified, 461 files readable, 1 match

[39489] doi:10.1186/s12874-022-01827-y [paper, repository]

Interpretable generalized neural additive models for mortality prediction of COVID-19 hospitalized patients in Hamadan, Iran.

Journal: BMC medical research methodology

Authors' code: neural-additive-models.github.io (no license)

Status: code verified

[39490] doi:10.31661/gmj.v11i.2497 [paper, data]

Selection of MicroRNAs Associated between Neural Stem Cells and Multiple Sclerosis : miRNAs between NSCs and MS for Diagnosis and Treatment.

Journal: Galen medical journal

Status: data only, 1 dataset cited

[39491] doi:10.3390/jimaging9010010 [paper, data]

RETRACTED: A Feature Extraction Using Probabilistic Neural Network and BTFSC-Net Model with Deep Learning for Brain Tumor Classification.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[39492] doi: [paper]

A Deep Learning Model for Preoperative Differentiation of Glioblastoma, Brain Metastasis, and Primary Central Nervous System Lymphoma: An External Validation Study

Journal: NeuroSci

Status: code on request

Friday, 30 December 2022 (19 papers)

[39493] doi:10.1002/hbm.26194 [paper, repository]

PhiPipe: A multi-modal MRI data processing pipeline with test-retest reliability and predicative validity assessments.

Journal: Human brain mapping

Authors' code: PHI-group/PhiPipe-release (no license)

Status: code verified, 1 file readable

[39494] doi:10.1016/j.crneur.2022.100070 [paper, data]

Cortical areas involved in grasping and reaching actions with and without visual information: An ALE meta-analysis of neuroimaging studies.

Journal: Current research in neurobiology

Status: data only, 1 dataset cited

[39495] doi:10.1016/j.isci.2022.105913 [paper]

GABAergic neurons in the dorsomedial hypothalamus regulate states of consciousness in sevoflurane anesthesia.

Journal: iScience

Status: code on request

[39496] doi:10.1016/j.isci.2022.105914 [paper]

Graded spikes differentially signal neurotransmitter input in cerebrospinal fluid contacting neurons of the mouse spinal cord.

Journal: iScience

Status: code on request

[39497] doi:10.1016/j.isci.2022.105921 [paper, data]

Modulation of social investigation by anterior hypothalamic nucleus rhythmic neural activity.

Journal: iScience

Status: code on request, 2 datasets cited

[39498] doi:10.1016/j.ynstr.2022.100511 [paper, repository]

Stress and the brain: Emotional support mediates the association between myelination in the right supramarginal gyrus and perceived chronic stress.

Journal: Neurobiology of stress

Authors' code: andersonwinkler/hcp (no license)

Status: code verified, 9 files readable, 1 match

[39499] doi:10.1038/s41592-022-01703-z [paper, repository]

Multifaceted atlases of the human brain in its infancy.

Journal: Nature methods

Authors' code: iba.yaplab.io (no license)

Status: code verified

[39500] doi:10.1038/s41592-022-01711-z [paper, repository]

Local shape descriptors for neuron segmentation.

Journal: Nature methods

Authors' code: funkelab/lsd (MIT), funkelab/funlib.evaluate (MIT)

Status: code verified, 72 files readable, 4 matches

[39501] doi:10.1186/s13148-022-01397-2 [paper, data]

Whole-blood methylation signatures are associated with and accurately classify multiple sclerosis disease severity.

Journal: Clinical epigenetics

Status: data only, 1 dataset cited

[39502] doi:10.1371/journal.pone.0279300 [paper, data]

Predictive simulation of sit-to-stand based on reflexive-controllers.

Journal: PloS one

Status: data only, 1 dataset cited

[39503] doi:10.1371/journal.pone.0279747 [paper, data]

Decreased cerebrospinal fluid orexin levels not associated with clinical sleep disturbance in Parkinson's disease: A retrospective study.

Journal: PloS one

Status: data only, 1 dataset cited

[39504] doi:10.1371/journal.pone.0279823 [paper, data]

The neural correlates of context driven changes in the emotional response: An fMRI study.

Journal: PloS one

Status: data only, 1 dataset cited

[39505] doi:10.18632/aging.204450 [paper, data]

Transcriptomic analysis of human ALS skeletal muscle reveals a disease-specific pattern of dysregulated circRNAs.

Journal: Aging

Status: data only, 6 datasets cited

[39506] doi:10.3390/biom13010074 [paper, repository]

Lack of Epileptogenic Effects of the Creatine Precursor Guanidinoacetic Acid on Neuronal Cultures In Vitro.

Journal: Biomolecules

Authors' code: Zenodo 7429271 (other-open), screenneuropharm/guanidinoaceticacid (MIT)

Status: code verified, 23 files readable, 4 matches

[39507] doi:10.3390/ijms24010675 [paper, data]

Transcriptome Profile in the Mouse Brain of Hepatic Encephalopathy and Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39508] doi:10.3390/s23010423 [paper, data]

Epileptic Seizure Prediction Based on Hybrid Seek Optimization Tuned Ensemble Classifier Using EEG Signals.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[39509] doi:10.5114/wo.2023.124612 [paper, data]

Brain tumor magnetic resonance images classification based machine learning paradigms.

Journal: Contemporary oncology (Poznan, Poland)

Status: data only, 1 dataset cited

[39510] doi:10.7554/elife.76158 [paper, data]

Complex pattern of facial remapping in somatosensory cortex following congenital but not acquired hand loss.

Journal: eLife

Status: data only, 1 dataset cited

[39511] doi:10.7554/elife.79667 [paper, repository]

Right inferior frontal gyrus damage is associated with impaired initiation of inhibitory control, but not its implementation.

Journal: eLife

Authors' code: OSF ck5zd (no license)

Status: code verified, 47 files readable, 6 matches

Thursday, 29 December 2022 (16 papers)

[39512] doi:10.1002/hbm.26190 [paper, repository]

Direct modulation index: A measure of phase amplitude coupling for neurophysiology data.

Journal: Human brain mapping

Authors' code: neurophysiological-analysis/FiNN (GPL-3.0), VoodooCode14/dmi (no license)

Status: code verified, 152 files readable, 4 matches

[39513] doi:10.1016/j.celrep.2022.111912 [paper, repository]

Axonal plasticity in response to active forces generated through magnetic nano-pulling.

Journal: Cell reports

Authors' code: Stefano-Luin/TrackFluoNGFvesicles (GPL-3.0), drive.google.com/drive/folders (no license)

Status: code verified, 59 files readable

[39514] doi:10.1038/s41467-022-35659-7 [paper, repository]

Efficient neural codes naturally emerge through gradient descent learning.

Journal: Nature communications

Authors' code: lukemelas/PyTorch-Pretrained-ViT (no license), KordingLab/ANN_psychophysics (no license), Zenodo 7387922 (other-open)

Status: code verified, 39 files readable, 9 matches

[39515] doi:10.1038/s41531-022-00442-4 [paper]

Baseline cerebral structural morphology predict freezing of gait in early drug-naïve Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[39516] doi:10.1038/s41593-022-01212-4 [paper, repository]

Hippocampal spatial representations exhibit a hyperbolic geometry that expands with experience.

Journal: Nature neuroscience

Authors' code: HuanqiuZhang/Fisher_info_codes (MIT), nebneuron/clique-top (MIT)

Status: code verified, 110 files readable, 6 matches

[39517] doi:10.1038/s41597-022-01917-y [paper, data]

A transcriptome dataset for gonadectomy-induced changes in rat spinal cord.

Journal: Scientific data

Status: data only, 1 dataset cited

[39518] doi:10.1038/s41598-022-26644-7 [paper, data]

Detection of Parkinson's disease from EEG signals using discrete wavelet transform, different entropy measures, and machine learning techniques.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39519] doi:10.1038/s43588-022-00390-2 [paper, repository]

Dimensionality reduction of calcium-imaged neuronal population activity.

Journal: Nature computational science

Authors' code: figshare 21646682 (CC-BY-4.0), Zenodo 7388544 (other-open), kohth/cilds (GPL-3.0)

Status: code verified, 1,922 files readable

[39520] doi:10.1089/neu.2022.0166 [paper]

Trends in Neurotrauma Epidemiology, Management, and Outcomes during the COVID-19 Pandemic in Kigali, Rwanda.

Journal: Journal of neurotrauma

Status: code on request

[39521] doi:10.1186/s12888-022-04488-9 [paper, data]

Somatic symptoms mediate the association between subclinical anxiety and depressive symptoms and its neuroimaging mechanisms.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[39522] doi:10.1186/s13195-022-01145-x [paper, data]

A low-dimensional cognitive-network space in Alzheimer's disease and frontotemporal dementia.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[39523] doi:10.1371/journal.pone.0275959 [paper]

Association between eating behavior and the immediate neural activity caused by viewing food images presented in and out of awareness: A magnetoencephalography study.

Journal: PloS one

Status: code on request

[39524] doi:10.3390/brainsci13010061 [paper, data]

A Large Video Set of Natural Human Actions for Visual and Cognitive Neuroscience Studies and Its Validation with fMRI.

Journal: Brain sciences

Status: data only, 1 dataset cited

[39525] doi:10.3390/brainsci13010067 [paper, data]

Dissociating Language and Thought in Human Reasoning.

Journal: Brain sciences

Status: data only, 1 dataset cited

[39526] doi:10.3390/brainsci13010068 [paper, repository]

Precise Spiking Motifs in Neurobiological and Neuromorphic Data.

Journal: Brain sciences

Authors' code: laurentperrinet/2022_ue-neurosciences-computationnelles (GPL-3.0), EPFL-LCN/pub-bellec-wang-2021-sample-and-measure (no license), SpikeAI/2022_polychronies-review (CC-BY-4.0)

Status: code verified, 29 files readable, 2 matches

[39527] doi:10.7554/elife.83680 [paper, repository]

Clonally related, Notch-differentiated spinal neurons integrate into distinct circuits.

Journal: eLife

Authors' code: bagnall-lab/Event-detection (CC0-1.0)

Status: empty repository, 2 files readable

Wednesday, 28 December 2022 (22 papers)

[39528] doi:10.1002/art.42353 [paper, data]

Role of Human Mesenchymal Stem Cells and Derived Extracellular Vesicles in Reducing Sensory Neuron Hyperexcitability and Pain Behaviors in Murine Osteoarthritis.

Journal: Arthritis & rheumatology (Hoboken, N.J.)

Status: data only, 1 dataset cited

[39529] doi:10.1002/hbm.26183 [paper]

Systematic evaluation of head motion on resting-state functional connectivity MRI in the neonate.

Journal: Human brain mapping

Status: code on request

[39530] doi:10.1007/s12035-022-03153-2 [paper, data]

The US9-Derived Protein gPTB9TM Modulates APP Processing Without Targeting Secretase Activities.

Journal: Molecular neurobiology

Status: data only, 2 datasets cited

[39531] doi:10.1016/j.cell.2022.12.010 [paper, repository]

Molecular and spatial signatures of mouse brain aging at single-cell resolution.

Journal: Cell

Authors' code: ZhuangLab/SpatialBrainAgingCell22 (no license), ZhuangLab/MERlin (MIT), swolock/scrublet (MIT), scverse/anndata (BSD-3-Clause), Teichlab/bbknn (MIT), slowkow/harmonypy (GPL-3.0), scverse/scanpy (BSD-3-Clause), lhqing/ALLCools (MIT)

Status: code verified, 494 files readable, 12 matches

[39532] doi:10.1016/j.isci.2022.105884 [paper, data]

Cell type characterization of spatiotemporal gene co-expression modules in Down syndrome brain.

Journal: iScience

Status: code on request, 1 dataset cited

[39533] doi:10.1016/j.isci.2022.105886 [paper]

Serotonin distinctly controls behavioral states in restrained and freely moving <i>Drosophila</i>.

Journal: iScience

Status: code on request

[39534] doi:10.1016/j.isci.2022.105891 [paper, repository]

A KO mouse model for the lncRNA Lhx1os produces motor neuron alterations and locomotor impairment.

Journal: iScience

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable, 2 matches

[39535] doi:10.1016/j.neuroimage.2022.119831 [paper, repository]

Striatal dopamine supports reward expectation and learning: A simultaneous PET/fMRI study.

Journal: NeuroImage

Authors' code: LabNeuroCogDevel (no license)

Status: code verified

[39536] doi:10.1016/j.neuroimage.2022.119841 [paper, repository]

Neural tracking of linguistic and acoustic speech representations decreases with advancing age.

Journal: NeuroImage

Authors' code: exporl/TemplateMatching (no license)

Status: code verified, 2 files readable, 1 match

[39537] doi:10.1016/j.neuroimage.2022.119843 [paper, repository]

A machine learning based approach towards high-dimensional mediation analysis.

Journal: NeuroImage

Authors' code: meet10may/deep-mediation (MIT), slundberg/shap (MIT)

Status: code verified, 71 files readable

[39538] doi:10.1038/s41380-022-01925-9 [paper, repository]

Neuroimaging profiling identifies distinct brain maturational subtypes of youth with mood and anxiety disorders.

Journal: Molecular psychiatry

Authors' code: evarol/HYDRA (other)

Status: code verified, 5 files readable, 1 match

[39539] doi:10.1038/s41467-022-35733-0 [paper]

Three-dimensional wide-field fluorescence microscopy for transcranial mapping of cortical microcirculation.

Journal: Nature communications

Status: code on request

[39540] doi:10.1073/pnas.2209990120 [paper, data]

Staged suppression of microglial autophagy facilitates regeneration in CNS demyelination by enhancing the production of linoleic acid.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[39541] doi:10.1073/pnas.2212330120 [paper, data]

Wdr59 promotes or inhibits TORC1 activity depending on cellular context.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[39542] doi:10.1111/ejn.15896 [paper, repository]

Connectome-based predictive modelling of cognitive reserve using task-based functional connectivity.

Journal: The European journal of neuroscience

Authors' code: rorytboyle/fMRI_QC (GPL-3.0), rorytboyle/fMRI_connectivity_processing (GPL-3.0), rorytboyle/flexible_cpm (GPL-2.0), rorytboyle/hierarchical_regression (GPL-3.0)

Status: code verified, 65 files readable, 15 matches

[39543] doi:10.1186/s13148-022-01416-2 [paper, data]

Circulating cell-free DNA methylation mirrors alterations in cerebral patterns in epilepsy.

Journal: Clinical epigenetics

Status: data only, 4 datasets cited

[39544] doi:10.1186/s40035-022-00329-7 [paper, data]

Targeting the overexpressed mitochondrial protein VDAC1 in a mouse model of Alzheimer's disease protects against mitochondrial dysfunction and mitigates brain pathology.

Journal: Translational neurodegeneration

Status: data only, 3 datasets cited

[39545] doi:10.1371/journal.pone.0278962 [paper, data]

Contributions of human amygdala nuclei to resting-state networks.

Journal: PloS one

Status: data only, 1 dataset cited

[39546] doi:10.3390/brainsci13010055 [paper, data]

Chloride Intracellular Channel Protein 2 Promotes Microglial Invasion: A Link to Microgliosis in the Parkinson's Disease Brain.

Journal: Brain sciences

Status: data only, 1 dataset cited

[39547] doi:10.3390/ijms24010495 [paper, repository]

Forced Remyelination Promotes Axon Regeneration in a Rat Model of Spinal Cord Injury.

Journal: International journal of molecular sciences

Authors' code: scrc.umanitoba.ca/doc (no license)

Status: code found, still to be checked

[39548] doi:10.7554/elife.80324 [paper, repository]

Mature parvalbumin interneuron function in prefrontal cortex requires activity during a postnatal sensitive period.

Journal: eLife

Authors' code: supp:PMC9797185/elife-80324-code1.zip (no license)

Status: code verified, 1 file readable

[39549] doi:10.7554/elife.82088 [paper, repository]

Fiber-specific structural properties relate to reading skills in children and adolescents.

Journal: eLife

Authors' code: smeisler/Meisler_Reading_FBA (MIT), OSF 3ady4 (no license)

Status: code verified, 49 files readable, 20 matches

Tuesday, 27 December 2022 (22 papers)

[39550] doi:10.1002/advs.202204717 [paper]

Deep Learning for Brain MRI Confirms Patterned Pathological Progression in Alzheimer's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[39551] doi:10.1002/hbm.26186 [paper, repository]

Decoding subject's own name in the primary auditory cortex.

Journal: Human brain mapping

Authors' code: pzeidman/dcm-peb-example (no license)

Status: code verified, 7 files readable, 2 matches

[39552] doi:10.1007/s10548-022-00935-8 [paper, repository]

fMRIflows: A Consortium of Fully Automatic Univariate and Multivariate fMRI Processing Pipelines.

Journal: Brain topography

Authors' code: miykael/fmriflows (BSD-3-Clause), python.org (no license)

Status: code verified, 54 files readable, 17 matches

[39553] doi:10.1007/s12033-022-00643-5 [paper, data]

Inhibition of the Glycolysis Prevents the Cerebral Infarction Progression Through Decreasing the Lactylation Levels of LCP1.

Journal: Molecular biotechnology

Status: data only, 2 datasets cited

[39554] doi:10.1016/j.dib.2022.108862 [paper, data]

Microarray dataset of gene transcription in mouse microglia and peripheral monocytes in contextual fear conditioning.

Journal: Data in brief

Status: data only, 2 datasets cited

[39555] doi:10.1038/s41380-022-01916-w [paper, repository]

A critical role of brain network architecture in a continuum model of autism spectrum disorders spanning from healthy individuals with genetic liability to individuals with ASD.

Journal: Molecular psychiatry

Authors' code: hub.docker.com/r/eauforest (no license)

Status: code verified

[39556] doi:10.1073/pnas.2215214120 [paper, data]

Mmp-induced fat body cell dissociation promotes pupal development and moderately averts pupal diapause by activating lipid metabolism.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[39557] doi:10.1073/pnas.2215660120 [paper, data]

Glutamate-GABA imbalance mediated by miR-8-5p and its STTM regulates phase-related behavior of locusts.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[39558] doi:10.1159/000528710 [paper, data]

Climate Change Influences Brain Size in Humans.

Journal: Brain, behavior and evolution

Status: data only, 1 dataset cited

[39559] doi:10.1159/000528762 [paper, data]

Endocranial Casts of Camelops hesternus and Palaeolama sp.: New Insights into the Recent History of the Camelid Brain.

Journal: Brain, behavior and evolution

Status: data only, 1 dataset cited

[39560] doi:10.1186/s12868-022-00758-0 [paper, repository]

Objective hearing threshold identification from auditory brainstem response measurements using supervised and self-supervised approaches.

Journal: BMC neuroscience

Authors' code: ExperimentalGenetics/ABR_thresholder (no license)

Status: code verified, 25 files readable, 14 matches

[39561] doi:10.1186/s12915-022-01500-2 [paper, data]

The gold-ringed octopus (Amphioctopus fangsiao) genome and cerebral single-nucleus transcriptomes provide insights into the evolution of karyotype and neural novelties.

Journal: BMC biology

Status: data only, 3 datasets cited

[39562] doi:10.1186/s12916-022-02689-3 [paper, data]

Multi-omics gut microbiome signatures in obese women: role of diet and uncontrolled eating behavior.

Journal: BMC medicine

Status: data only, 2 datasets cited

[39563] doi:10.1186/s12967-022-03830-9 [paper, data]

Protective effects of Gypenoside XVII against cerebral ischemia/reperfusion injury via SIRT1-FOXO3A- and Hif1a-BNIP3-mediated mitochondrial autophagy.

Journal: Journal of translational medicine

Status: data only, 4 datasets cited

[39564] doi:10.1186/s13287-022-03216-0 [paper, data]

KW-2449 and VPA exert therapeutic effects on human neurons and cerebral organoids derived from MECP2-null hESCs.

Journal: Stem cell research & therapy

Status: data only, 2 datasets cited

[39565] doi:10.1371/journal.pcbi.1009988 [paper, repository]

Dynamic causal modelling shows a prominent role of local inhibition in alpha power modulation in higher visual cortex.

Journal: PLoS computational biology

Authors' code: Frederikvdsteen/EO_OC_DCM (no license)

Status: code verified, 21 files readable, 6 matches

[39566] doi:10.1371/journal.pcbi.1010776 [paper, repository]

Robust and brain-like working memory through short-term synaptic plasticity.

Journal: PLoS computational biology

Authors' code: kozleo/robust_wm_stsp (no license)

Status: code verified, 48 files readable, 21 matches

[39567] doi:10.1371/journal.pone.0279706 [paper, data]

Assessing electrocardiogram changes after ischemic stroke with artificial intelligence.

Journal: PloS one

Status: data only, 1 dataset cited

[39568] doi:10.15252/msb.202211147 [paper, repository]

A single-cell RNA labeling strategy for measuring stress response upon tissue dissociation.

Journal: Molecular systems biology

Authors' code: anikaneuschulz/MTglob_pipeline (no license)

Status: code verified, 23 files readable

[39569] doi:10.3390/ijerph20010441 [paper, data]

European Epidemiological Patterns of Cannabis- and Substance-Related Congenital Neurological Anomalies: Geospatiotemporal and Causal Inferential Study.

Journal: International journal of environmental research and public health

Status: data only, 2 datasets cited

[39570] doi:10.3390/pharmaceutics15010082 [paper, data]

Docosahexaenoic Acid Ameliorates Contextual Fear Memory Deficits in the Tg2576 Alzheimer's Disease Mouse Model: Cellular and Molecular Correlates.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

[39571] doi:10.3390/s23010280 [paper, data]

Framework to Detect Schizophrenia in Brain MRI Slices with Mayfly Algorithm-Selected Deep and Handcrafted Features.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Monday, 26 December 2022 (12 papers)

[39572] doi:10.1002/brb3.2854 [paper, data]

Neural correlates of lexical stress processing in a foreign free-stress language.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[39573] doi:10.1016/j.fmre.2022.12.009 [paper, repository]

Spatiotemporal information conversion machine for time-series forecasting.

Journal: Fundamental research

Authors' code: mahp-scut/STICM (no license)

Status: code verified, 12 files readable

[39574] doi:10.1016/j.isci.2022.105879 [paper, data]

Spatial proximity to others induces plastic changes in the neural representation of the peripersonal space.

Journal: iScience

Status: data only, 1 dataset cited

[39575] doi:10.1016/j.isci.2022.105885 [paper, repository]

Downregulation of UBE4B promotes CNS axon regrowth and functional recovery after stroke.

Journal: iScience

Authors' code: Zenodo 7375563 (CC-BY-4.0), Zenodo 7375746 (CC-BY-4.0)

Status: code verified, 2 files readable

[39576] doi:10.1016/j.isci.2022.105898 [paper]

Generation of dorsoventral human spinal cord organoids via functionalizing composite scaffold for drug testing.

Journal: iScience

Status: code on request

[39577] doi:10.1038/s41467-022-35536-3 [paper, repository]

Multimodal monitoring of human cortical organoids implanted in mice reveal functional connection with visual cortex.

Journal: Nature communications

Authors' code: mwilsonUCSD/multimodal_organoids (MIT), Zenodo 7375877 (other-open)

Status: code verified, 54 files readable, 7 matches

[39578] doi:10.1038/s41598-022-26958-6 [paper, data]

A new strategy for the early detection of alzheimer disease stages using multifractal geometry analysis based on K-Nearest Neighbor algorithm.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39579] doi:10.1080/15592294.2022.2158285 [paper, data]

Leukocyte DNA methylation in Alzheimer´s disease associated genes: replication of findings from neuronal cells.

Journal: Epigenetics

Status: code on request, 2 datasets cited

[39580] doi:10.1084/jem.20220615 [paper, data]

Coordinated neurostimulation promotes circuit rewiring and unlocks recovery after spinal cord injury.

Journal: The Journal of experimental medicine

Status: data only, 1 dataset cited

[39581] doi:10.1098/rstb.2021.0363 [paper, data]

Social semantics: the organization and grounding of abstract concepts.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 1 dataset cited

[39582] doi:10.1098/rstb.2021.0373 [paper, data]

Influence of language on perception and concept formation in a brain-constrained deep neural network model.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 1 dataset cited

[39583] doi:10.1186/s12974-022-02678-6 [paper, data]

Lactate attenuates astrocytic inflammation by inhibiting ubiquitination and degradation of NDRG2 under oxygen-glucose deprivation conditions.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

Sunday, 25 December 2022 (5 papers)

[39584] doi:10.1007/s10548-022-00934-9 [paper, data]

Resting-State Functional Networks Correlate with Motor Performance in a Complex Visuomotor Task: An EEG Microstate Pilot Study on Healthy Individuals.

Journal: Brain topography

Status: data only, 1 dataset cited

[39585] doi:10.1038/s41598-022-26882-9 [paper, data]

Hybrid fuzzy deep neural network toward temporal-spatial-frequency features learning of motor imagery signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39586] doi:10.1111/cas.15691 [paper, data]

Recent advances in the molecular understanding of medulloblastoma.

Journal: Cancer science

Status: data only, 3 datasets cited

[39587] doi:10.1186/s12974-022-02676-8 [paper]

Inhibition of CCR2 attenuates neuroinflammation and neuronal apoptosis after subarachnoid hemorrhage through the PI3K/Akt pathway.

Journal: Journal of neuroinflammation

Status: data only

[39588] doi:10.3390/s23010202 [paper, repository]

End-to-End Model-Based Detection of Infants with Autism Spectrum Disorder Using a Pretrained Model.

Journal: Sensors (Basel, Switzerland)

Authors' code: AiTeRLab-GIST/E2E_ASD_DETECTION (MIT)

Status: code verified, 35 files readable, 1 match

Saturday, 24 December 2022 (15 papers)

[39589] doi:10.1016/j.isci.2022.105872 [paper, repository]

Vision transformer-based weakly supervised histopathological image analysis of primary brain tumors.

Journal: iScience

Authors' code: lzx325/ViT-WSI-repo (no license)

Status: code verified, 30 files readable, 4 matches

[39590] doi:10.1016/j.isci.2022.105874 [paper, repository]

Modeling foot sole cutaneous afferents: FootSim.

Journal: iScience

Authors' code: LClel/FootSim_insole_demonstration (no license), Zenodo 7457045 (other-open), ActiveTouchLab/footsim-python (no license), Zenodo 7456827 (other-open)

Status: code verified, 29 files readable, 7 matches

[39591] doi:10.1016/j.nicl.2022.103305 [paper, data]

The impact of etiology in lesion-symptom mapping - A direct comparison between tumor and stroke.

Journal: NeuroImage. Clinical

Status: data only, 2 datasets cited

[39592] doi:10.1038/s41467-022-35488-8 [paper, repository]

Topographic organization of eye-position dependent gain fields in human visual cortex.

Journal: Nature communications

Authors' code: OSF gtd5r (no license)

Status: code verified, 52 files readable, 14 matches

[39593] doi:10.1038/s41467-022-35601-x [paper, repository]

Continuous cholinergic-dopaminergic updating in the nucleus accumbens underlies approaches to reward-predicting cues.

Journal: Nature communications

Authors' code: mousebytes.ca/comp-edit (no license)

Status: code verified

[39594] doi:10.1038/s41598-022-26491-6 [paper, repository]

Disconnectomics to unravel the network underlying deficits of spatial exploration and attention.

Journal: Scientific reports

Authors' code: doi:10.17632/jgnpbpbbx5.2 (no license)

Status: code verified

[39595] doi:10.1111/acel.13761 [paper, repository]

P2Y₆ receptor-dependent microglial phagocytosis of synapses mediates synaptic and memory loss in aging.

Journal: Aging cell

Authors' code: gurdon-institute/Synaptic-Density-Analysis (AGPL-3.0)

Status: code verified, 2 files readable, 1 match

[39596] doi:10.1155/2022/9235358 [paper, data]

Bioinformatic Analysis of Genetic Factors from Human Blood Samples and Postmortem Brains in Parkinson's Disease.

Journal: Oxidative medicine and cellular longevity

Status: data only, 1 dataset cited

[39597] doi:10.1177/11779322221145373 [paper, data]

Bioinformatics and System Biology Techniques to Determine Biomolecular Signatures and Pathways of Prion Disorder.

Journal: Bioinformatics and biology insights

Status: data only, 1 dataset cited

[39598] doi:10.3390/biology12010034 [paper, repository]

Network Neuroscience Untethered: Brain-Wide Immediate Early Gene Expression for the Analysis of Functional Connectivity in Freely Behaving Animals.

Journal: Biology

Authors' code: dterstege/publicationrepo (no license)

Status: code verified, 15 files readable, 7 matches

[39599] doi:10.3390/brainsci13010042 [paper, data]

In Silico Structural Analysis Predicting the Pathogenicity of PLP1 Mutations in Multiple Sclerosis.

Journal: Brain sciences

Status: data only, 1 dataset cited

[39600] doi:10.3390/cells12010075 [paper, data]

Characterizing Relevant MicroRNA Editing Sites in Parkinson's Disease.

Journal: Cells

Status: data only, 1 dataset cited

[39601] doi:10.3390/e25010033 [paper, repository]

Domain Adaptation Principal Component Analysis: Base Linear Method for Learning with Out-of-Distribution Data.

Journal: Entropy (Basel, Switzerland)

Authors' code: mirkes/DAPCA (GPL-3.0), Mirkes/SupervisedPCA (CC0-1.0), vcoyette/DANN (no license)

Status: code verified, 59 files readable

[39602] doi:10.3390/ijms24010303 [paper, data]

The Hippocampal Response to Acute Corticosterone Elevation Is Altered in a Mouse Model for Angelman Syndrome.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39603] doi:10.3390/s23010186 [paper, repository]

EEG Authentication System Based on One- and Multi-Class Machine Learning Classifiers.

Journal: Sensors (Basel, Switzerland)

Authors' code: luishalvarez/EEG-Authentication (no license)

Status: dead link

Friday, 23 December 2022 (23 papers)

[39604] doi:10.1002/hbm.26167 [paper, repository]

Fetal behavior during MRI changes with age and relates to network dynamics.

Journal: Human brain mapping

Authors' code: ndar.nih.gov (no license)

Status: code found, still to be checked

[39605] doi:10.1002/mds.29302 [paper, data]

Subthalamic Nucleus Stimulation-Induced Local Field Potential Changes in Dystonia.

Journal: Movement disorders : official journal of the Movement Disorder Society

Status: data only, 1 dataset cited

[39606] doi:10.1016/j.dcn.2022.101192 [paper, data]

Distinct multivariate structural brain profiles are related to variations in short- and long-delay memory consolidation across children and young adults.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[39607] doi:10.1016/j.dib.2022.108847 [paper, repository]

Outdoor walking: Mobile EEG dataset from walking during oddball task and walking synchronization task.

Journal: Data in brief

Authors' code: jscanlon275/jos_sync2 (no license)

Status: code verified, 37 files readable, 4 matches

[39608] doi:10.1016/j.isci.2022.105865 [paper]

Affective mirror and anti-mirror neurons relate to prosocial help in rats.

Journal: iScience

Status: code on request

[39609] doi:10.1016/j.neuroimage.2022.119827 [paper, repository]

Improving robustness of 3D multi-shot EPI by structured low-rank reconstruction of segmented CAIPI sampling for fMRI at 7T.

Journal: NeuroImage

Authors' code: XChen-p/Multishot-EPI (no license)

Status: code verified, 12 files readable, 2 matches

[39610] doi:10.1016/j.nicl.2022.103299 [paper, data]

Altered engagement of the speech motor network is associated with reduced phonological working memory in autism.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[39611] doi:10.1038/s41598-022-26543-x [paper, data]

Aggregation of alpha-synuclein in enteric neurons does not impact function in vitro.

Journal: Scientific reports

Status: data only, 2 datasets cited

[39612] doi:10.1093/pnasnexus/pgac304 [paper, repository]

Model of inverse bleb growth explains giant vacuole dynamics during cell mechanoadaptation.

Journal: PNAS nexus

Authors' code: cairola/GiantVacuoleProject (MIT)

Status: code verified, 3 files readable

[39613] doi:10.1101/lm.053649.122 [paper, repository]

Sleep spindles and slow waves are physiological markers for age-related changes in gray matter in brain regions supporting problem-solving skills.

Journal: Learning & memory (Cold Spring Harbor, N.Y.)

Authors' code: stuartfogel/Period-Amplitude-Analysis (GPL-3.0)

Status: code verified, 7 files readable, 3 matches

[39614] doi:10.1111/ejn.15894 [paper, repository]

Neural synchronization and intervention in pre-readers who later on develop dyslexia.

Journal: The European journal of neuroscience

Authors' code: OSF cyked (no license)

Status: empty repository

[39615] doi:10.1155/2022/5852089 [paper]

A Complex Heterogeneous Network Model of Disease Regulated by Noncoding RNAs: A Case Study of Unstable Angina Pectoris.

Journal: Computational intelligence and neuroscience

Status: code on request

[39616] doi:10.1186/s13024-022-00588-y [paper, data]

TREM2 dependent and independent functions of microglia in Alzheimer's disease.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[39617] doi:10.3389/fneur.2022.1102672 [paper]

Identification of miRNA-mRNA regulatory network associated with the glutamatergic system in post-traumatic epilepsy rats.

Journal: Frontiers in neurology

Status: data only

[39618] doi:10.3389/fnins.2022.1079357 [paper, repository]

STSC-SNN: Spatio-Temporal Synaptic Connection with temporal convolution and attention for spiking neural networks.

Journal: Frontiers in neuroscience

Authors' code: Tab-ct/STSC-SNN (no license), fangwei123456/spikingjelly (Apache-2.0)

Status: code verified, 518 files readable, 8 matches

[39619] doi:10.3389/fnins.2022.951321 [paper, data]

Preservation of EEG spectral power features during simultaneous EEG-fMRI.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[39620] doi:10.3389/fphys.2022.946613 [paper, repository]

Pulse respiration quotient as a measure sensitive to changes in dynamic behavior of cardiorespiratory coupling such as body posture and breathing regime.

Journal: Frontiers in physiology

Authors' code: Zenodo 5643545 (CC-BY-4.0)

Status: empty repository

[39621] doi:10.3390/diagnostics13010047 [paper, data]

Effect of Targeted Embolization on Seizure Outcomes in Patients with Brain Arteriovenous Malformations.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[39622] doi:10.3390/e25010026 [paper, repository]

Neural Information Squeezer for Causal Emergence.

Journal: Entropy (Basel, Switzerland)

Authors' code: jakezj/NIS_for_Causal_Emergence (no license)

Status: code verified, 9 files readable, 3 matches

[39623] doi:10.3390/ijms24010248 [paper, repository]

Myelinating Co-Culture as a Model to Study Anti-NMDAR Neurotoxicity.

Journal: International journal of molecular sciences

Authors' code: muecs/cp (no license)

Status: empty repository, 1 file readable

[39624] doi:10.3390/ijms24010285 [paper, repository]

Learning in Transcriptional Network Models: Computational Discovery of Pathway-Level Memory and Effective Interventions.

Journal: International journal of molecular sciences

Authors' code: wesleypclawson/GRN_ODE (no license)

Status: code verified, 53 files readable, 4 matches

[39625] doi:10.7554/elife.80935 [paper, repository]

Cortical activity during naturalistic music listening reflects short-range predictions based on long-term experience.

Journal: eLife

Authors' code: gwinndr/MusicTransformer-Pytorch (MIT)

Status: code verified, 17 files readable, 3 matches

[39626] doi:10.7554/elife.83008 [paper, repository]

Fan cells in lateral entorhinal cortex directly influence medial entorhinal cortex through synaptic connections in layer 1.

Journal: eLife

Authors' code: MattNolanLab/lec_to_mec (GPL-3.0)

Status: code verified, 4 files readable, 12 matches

Thursday, 22 December 2022 (32 papers, 22 on this page)

[39627] doi:10.1002/alz.12894 [paper, repository]

Synaptic resilience is associated with maintained cognition during ageing.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Spires-Jones-Lab (no license)

Status: code verified

[39628] doi:10.1007/s00429-022-02603-w [paper, data]

Characterizing functional modules in the human thalamus: coactivation-based parcellation and systems-level functional decoding.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[39629] doi:10.1016/j.dcn.2022.101191 [paper, repository]

A cognitive process modeling framework for the ABCD study stop-signal task.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 2h8a7 (no license)

Status: code verified, 28 files readable, 8 matches

[39630] doi:10.1016/j.isci.2022.105856 [paper, repository]

Face familiarity detection with complex synapses.

Journal: iScience

Authors' code: jil095/cmplx-syn (MIT)

Status: code verified, 15 files readable, 2 matches

[39631] doi:10.1016/j.stemcr.2022.11.014 [paper, repository]

Long-term calcium imaging reveals functional development in hiPSC-derived cultures comparable to human but not rat primary cultures.

Journal: Stem cell reports

Authors' code: Zenodo 1119026 (MIT)

Status: code verified, 949 files readable

[39632] doi:10.1038/s41398-022-02281-6 [paper, repository]

The impact of increasing levels of blood C-reactive protein on the inflammatory loci SPI1 and CD33 in Alzheimer's disease.

Journal: Translational psychiatry

Authors' code: jjfarrell/apoe-genotyper (no license), hail-is/hail (MIT)

Status: code verified, 1,656 files readable, 1 match

[39633] doi:10.1038/s41467-022-35346-7 [paper, repository]

Median raphe serotonergic neurons projecting to the interpeduncular nucleus control preference and aversion.

Journal: Nature communications

Authors' code: YuYuB/MRN-Head-Fixed (MIT)

Status: code verified, 7 files readable

[39634] doi:10.1038/s41467-022-35395-y [paper, repository]

Synaptic basis of a sub-second representation of time in a neural circuit model.

Journal: Nature communications

Authors' code: alessandrobarri/cerebellar_cortex_input_STP (GPL-3.0)

Status: code verified, 23 files readable, 4 matches

[39635] doi:10.1038/s41467-022-35558-x [paper, data]

Memory for nonadjacent dependencies in the first year of life and its relation to sleep.

Journal: Nature communications

Status: data only, 1 dataset cited

[39636] doi:10.1038/s41593-022-01211-5 [paper, repository]

Arithmetic value representation for hierarchical behavior composition.

Journal: Nature neuroscience

Authors' code: HiroshiMakinoLaboratory/Makino2022NatureNeuroscience (no license)

Status: code verified, 43 files readable, 15 matches

[39637] doi:10.1038/s41593-022-01217-z [paper, repository]

Region-selective control of the thalamic reticular nucleus via cortical layer 5 pyramidal cells.

Journal: Nature neuroscience

Authors' code: hadingernora/Hadinger-et-al.-2022-NN-codes (no license)

Status: code verified, 9 files readable, 9 matches

[39638] doi:10.1038/s41598-022-25720-2 [paper]

Prestimulus oscillatory brain activity interacts with evoked recurrent processing to facilitate conscious visual perception.

Journal: Scientific reports

Status: code on request

[39639] doi:10.1038/s41598-022-26312-w [paper, repository]

Neural Inverse Design of Nanostructures (NIDN).

Journal: Scientific reports

Authors' code: esa/NIDN (GPL-3.0)

Status: code verified, 97 files readable, 4 matches

[39640] doi:10.1093/braincomms/fcac336 [paper, repository]

Meta-topologies define distinct anatomical classes of brain tumours linked to histology and survival.

Journal: Brain communications

Authors' code: Zenodo 5515356 (CC-BY-4.0)

Status: code verified, 2 files readable, 2 matches

[39641] doi:10.1155/2022/1759009 [paper]

AdoR-1 (Adenosine Receptor) Contributes to Protection against Paraquat-Induced Oxidative Stress in <i>Caenorhabditis elegans</i>.

Journal: Oxidative medicine and cellular longevity

Status: data only

[39642] doi:10.1172/jci.insight.161765 [paper, data]

Kidney collecting duct cells make vasopressin in response to NaCl-induced hypertonicity.

Journal: JCI insight

Status: data only, 1 dataset cited

[39643] doi:10.1177/0271678x221147091 [paper, repository]

Germinal matrix hemorrhage induces immune responses, brain injury, and motor impairment in neonatal rats.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: xiayh17/RNAseqStat (other)

Status: code verified, 52 files readable

[39644] doi:10.1186/s12864-022-09071-w [paper, data]

NSD1 gene evolves under episodic selection within primates and mutations of specific exons in humans cause Sotos syndrome.

Journal: BMC genomics

Status: data only, 1 dataset cited

[39645] doi:10.1186/s12979-022-00323-7 [paper, repository]

Obesity-induced neuroinflammation and cognitive impairment in young adult versus middle-aged mice.

Journal: Immunity & ageing : I & A

Authors' code: hurlab/richR (GPL-3.0)

Status: code verified, 124 files readable, 1 match

[39646] doi:10.1371/journal.pcbi.1010798 [paper, repository]

Mechanistic model for human brain metabolism and its connection to the neurovascular coupling.

Journal: PLoS computational biology

Authors' code: gitlab.liu.se/nicsu70/nvc_metabolismmodel (no license)

Status: code verified, 29 files readable, 1 match

[39647] doi:10.1371/journal.pcbi.1010809 [paper, repository]

Mesoscopic description of hippocampal replay and metastability in spiking neural networks with short-term plasticity.

Journal: PLoS computational biology

Authors' code: BastianPietras/meso_stp (GPL-3.0)

Status: code verified, 7 files readable, 6 matches

[39648] doi:10.1371/journal.pone.0277957 [paper, repository]

Machine learning for prediction of postoperative nausea and vomiting in patients with intravenous patient-controlled analgesia.

Journal: PloS one

Authors' code: jgshim/IV-PCA (no license), jgshim/PONV (no license)

Status: code verified, 18 files readable, 3 matches

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