Every paper, by date: page 178

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 178 of 200: 22 December 2022 to 12 December 2022.

Thursday, 22 December 2022 (32 papers, 10 on this page)

[39649] doi:10.3389/fcell.2022.956604 [paper, data]

Genome-wide 5-hydroxymethylcytosine (5hmC) reassigned in Pten-depleted mESCs along neural differentiation.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[39650] doi:10.3389/fimmu.2022.1043572 [paper]

A metabolite attenuates neuroinflammation, synaptic loss and cognitive deficits induced by chronic infection of <i>Toxoplasma gondii</i>.

Journal: Frontiers in immunology

Status: data only

[39651] doi:10.3389/fimmu.2022.1053856 [paper, repository]

Multi-omics analyses of tumor-associated immune-infiltrating cells with the novel immune checkpoint protein tyrosine phosphatase 1B (PTP1B) in extracellular matrix of brain-lower-grade-glioma (LGG) and uveal-melanoma (UVM).

Journal: Frontiers in immunology

Authors' code: akoch8/mexpress (CC-BY-NC-SA-4.0)

Status: code verified, 25 files readable, 3 matches

[39652] doi:10.3389/fimmu.2022.1058204 [paper, data]

New insights into the analgesic properties of the XCL1/XCR1 and XCL1/ITGA9 axes modulation under neuropathic pain conditions - evidence from animal studies.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[39653] doi:10.3389/fnagi.2022.1033128 [paper]

Exploring the role of Tibetan medicinal formula Qishiwei Zhenzhu Pills (Ranasampel) against diabetes mellitus-linked cognitive impairment of db/db mice through serum pharmacochemistry and microarray data analysis.

Journal: Frontiers in aging neuroscience

Status: data only

[39654] doi:10.3389/fnins.2022.1022354 [paper, data]

Effects of acute ischemic stroke on binaural perception.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[39655] doi:10.3389/fnins.2022.1079498 [paper, repository]

Single-cell transcriptome reveals diversity of Müller cells with different metabolic-mitochondrial signatures in normal and degenerated macula.

Journal: Frontiers in neuroscience

Authors' code: burdalab/TREA (no license)

Status: code verified, 6 files readable

[39656] doi:10.3390/bioengineering10010018 [paper, data]

Brain Tumor Detection and Classification Using Deep Learning and Sine-Cosine Fitness Grey Wolf Optimization.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[39657] doi:10.7554/elife.81217 [paper, repository]

A generalizable brain extraction net (BEN) for multimodal MRI data from rodents, nonhuman primates, and humans.

Journal: eLife

Authors' code: yu02019/BEN (no license)

Status: code verified, 79 files readable, 10 matches

[39658] doi:10.7554/elife.82955 [paper, repository]

Molecular mechanism underlying desensitization of the proton-activated chloride channel PAC.

Journal: eLife

Authors' code: zruan/PAC_desensitization_eLife2022 (BSD-2-Clause)

Status: code verified, 6 files readable, 1 match

Wednesday, 21 December 2022 (31 papers)

[39659] doi:10.1002/hbm.26170 [paper, repository]

Enhanced hyperalignment via spatial prior information.

Journal: Human brain mapping

Authors' code: angeella/promisesmodel (no license)

Status: code verified, 23 files readable, 6 matches

[39660] doi:10.1007/s10072-022-06561-3 [paper, data]

Efficacy of functional electrical stimulation in rehabilitating patients with foot drop symptoms after stroke and its correlation with somatosensory evoked potentials-a crossover randomised controlled trial.

Journal: Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology

Status: data only, 1 dataset cited

[39661] doi:10.1016/j.ebiom.2022.104425 [paper, repository]

Mapping the deficit dimension structure of the National Institutes of Health Stroke Scale.

Journal: EBioMedicine

Authors' code: atdemarco/svrlsmgui (GPL-3.0), jichen-psy/OPNMFevaluation (no license)

Status: code verified, 142 files readable, 2 matches

[39662] doi:10.1016/j.isci.2022.105846 [paper]

The brain structure and the neural network features of the diurnal cuttlefish <i>Sepia plangon</i>.

Journal: iScience

Status: code on request

[39663] doi:10.1016/j.neuroimage.2022.119829 [paper]

MRI assessment of cerebral oxygen extraction fraction in the medial temporal lobe.

Journal: NeuroImage

Status: code on request

[39664] doi:10.1038/s41467-022-35190-9 [paper, repository]

Tiltable objective microscope visualizes selectivity for head motion direction and dynamics in zebrafish vestibular system.

Journal: Nature communications

Authors' code: Zenodo 7147882 (CC-BY-4.0)

Status: code verified

[39665] doi:10.1038/s41467-022-35321-2 [paper, repository]

Multi-organ imaging demonstrates the heart-brain-liver axis in UK Biobank participants.

Journal: Nature communications

Authors' code: OSF zkmeq (no license)

Status: code verified, 8 files readable, 8 matches

[39666] doi:10.1038/s41467-022-35373-4 [paper]

Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling.

Journal: Nature communications

Status: code on request

[39667] doi:10.1038/s41467-022-35388-x [paper, repository]

Huntington disease oligodendrocyte maturation deficits revealed by single-nucleus RNAseq are rescued by thiamine-biotin supplementation.

Journal: Nature communications

Authors' code: 10XGenomics/cellranger (MIT), jwuuci/snRNAseqHD (no license)

Status: code verified, 792 files readable, 5 matches

[39668] doi:10.1038/s41467-022-35501-0 [paper, data]

The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.

Journal: Nature communications

Status: data only, 4 datasets cited

[39669] doi:10.1038/s41531-022-00437-1 [paper]

Diffusion along perivascular spaces as marker for impairment of glymphatic system in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[39670] doi:10.1038/s41573-022-00612-2 [paper, data]

Amyotrophic lateral sclerosis: a neurodegenerative disorder poised for successful therapeutic translation.

Journal: Nature reviews. Drug discovery

Status: data only, 7 datasets cited

[39671] doi:10.1038/s41598-022-26389-3 [paper, data]

Construction of a machine learning-based artificial neural network for discriminating PANoptosis related subgroups to predict prognosis in low-grade gliomas.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39672] doi:10.1038/s41598-022-26498-z [paper]

Classification at the accuracy limit: facing the problem of data ambiguity.

Journal: Scientific reports

Status: code on request

[39673] doi:10.1101/2022.12.21.521156 [paper, data]

The processing of stress in a foreign language modulates functional antagonism between default mode and attention network regions

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[39674] doi:10.1186/s13041-022-00988-7 [paper, data]

Object location learning in mice requires hippocampal somatostatin interneuron activity and is facilitated by mTORC1-mediated long-term potentiation of their excitatory synapses.

Journal: Molecular brain

Status: data only, 1 dataset cited

[39675] doi:10.1186/s13041-022-00989-6 [paper, data]

Chronic skin ultraviolet irradiation induces transcriptomic changes associated with microglial dysfunction in the hippocampus.

Journal: Molecular brain

Status: data only, 1 dataset cited

[39676] doi:10.1186/s13195-022-01124-2 [paper, data]

Lecanemab in patients with early Alzheimer's disease: detailed results on biomarker, cognitive, and clinical effects from the randomized and open-label extension of the phase 2 proof-of-concept study.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[39677] doi:10.1186/s40478-022-01494-6 [paper, data]

Spatially resolved transcriptomics reveals genes associated with the vulnerability of middle temporal gyrus in Alzheimer's disease.

Journal: Acta neuropathologica communications

Status: data only, 9 datasets cited

[39678] doi:10.1242/bio.059666 [paper, repository]

Sevoflurane-induced amnesia is associated with inhibition of hippocampal cell ensemble activity after learning.

Journal: Biology open

Authors' code: IdlingBrainUT/NMF_Python (no license)

Status: code verified, 3 files readable

[39679] doi:10.1371/journal.pbio.3001889 [paper, repository]

Efficient coding theory of dynamic attentional modulation.

Journal: PLoS biology

Authors' code: seafile.ist.ac.at/published/attentionalmodulation_code (no license)

Status: code verified

[39680] doi:10.1371/journal.pbio.3001923 [paper, data]

ERR2 and ERR3 promote the development of gamma motor neuron functional properties required for proprioceptive movement control.

Journal: PLoS biology

Status: data only, 1 dataset cited

[39681] doi:10.1371/journal.pbio.3001938 [paper, repository]

Differences in the functional brain architecture of sustained attention and working memory in youth and adults.

Journal: PLoS biology

Authors' code: monicadrosenberg/Rosenberg_PNAS2020 (GPL-3.0), okardan/ABCD_SA-WM (no license)

Status: code verified, 10 files readable, 5 matches

[39682] doi:10.1371/journal.pcbi.1010739 [paper, repository]

A method to estimate the cellular composition of the mouse brain from heterogeneous datasets.

Journal: PLoS computational biology

Authors' code: BlueBrain/atlas-densities (Apache-2.0)

Status: code verified, 65 files readable, 5 matches

[39683] doi:10.15252/emmm.202217175 [paper, data]

Aged lipid-laden microglia display impaired responses to stroke.

Journal: EMBO molecular medicine

Status: data only, 5 datasets cited

[39684] doi:10.3389/fncom.2022.1057439 [paper, repository]

On the similarities of representations in artificial and brain neural networks for speech recognition.

Journal: Frontiers in computational neuroscience

Authors' code: rsagroup/rsatoolbox_matlab (no license), lisulab/rsatoolbox (no license), lisulab/rsa-dnn-mapping (no license), lisulab/htk-postprocessing (no license)

Status: code verified, 809 files readable, 7 matches

[39685] doi:10.3389/fnins.2022.1029473 [paper, data]

The function of p53 and its role in Alzheimer's and Parkinson's disease compared to age-related macular degeneration.

Journal: Frontiers in neuroscience

Status: data only, 3 datasets cited

[39686] doi:10.3389/fnrgo.2022.1045653 [paper, data]

Merging Brain-Computer Interface P300 speller datasets: Perspectives and pitfalls.

Journal: Frontiers in neuroergonomics

Status: data only, 5 datasets cited

[39687] doi:10.3390/cells12010029 [paper, data]

Jamming Transitions in Astrocytes and Glioblastoma Are Induced by Cell Density and Tension.

Journal: Cells

Status: code on request, 1 dataset cited

[39688] doi:10.3390/ijms24010063 [paper, repository]

Maternal Vitamin D Levels during Pregnancy and Offspring Psychiatric Outcomes: A Systematic Review.

Journal: International journal of molecular sciences

Authors' code: OSF k6twd (no license)

Status: code found, still to be checked

[39689] doi:10.3390/toxins15010008 [paper, data]

The Sea Anemone Neurotoxins Modulating Sodium Channels: An Insight at Structure and Functional Activity after Four Decades of Investigation.

Journal: Toxins

Status: data only, 1 dataset cited

Tuesday, 20 December 2022 (25 papers)

[39690] doi:10.1002/hbm.25947 [paper, data]

Genetic and environmental influence on resting state networks in young male and female adults: a cartographer mapping study.

Journal: Human brain mapping

Status: code on request, 4 datasets cited

[39691] doi:10.1002/hbm.26164 [paper]

Investigating cognitive neuroscience theories of human intelligence: A connectome-based predictive modeling approach.

Journal: Human brain mapping

Status: code on request

[39692] doi:10.1002/nep3.14 [paper, data]

Ex vivo 100 μm isotropic diffusion MRI-based tractography of connectivity changes in the end-stage R6/2 mouse model of Huntington's disease.

Journal: Neuroprotection (Chichester, England)

Status: data only, 1 dataset cited

[39693] doi:10.1016/j.bpsc.2022.12.007 [paper, repository]

Free-Water Diffusion Magnetic Resonance Imaging Differentiates Suicidal Ideation From Suicide Attempt in Treatment-Resistant Depression.

Journal: Biological psychiatry. Cognitive neuroscience and neuroimaging

Authors' code: pnlbwh/pnlNipype (other), pnlbwh/tbss (other)

Status: code verified, 52 files readable

[39694] doi:10.1016/j.cortex.2022.11.011 [paper, data]

Pre-frontal stimulation does not reliably increase reward responsiveness.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Status: data only, 1 dataset cited

[39695] doi:10.1016/j.isci.2022.105840 [paper]

Chemogenetic activation of astrocytes promotes remyelination and restores cognitive deficits in visceral hypersensitive rats.

Journal: iScience

Status: code on request

[39696] doi:10.1016/j.xpro.2022.101963 [paper]

In vivo whole-cell recording from morphologically identified mouse superior colliculus neurons.

Journal: STAR protocols

Status: code on request

[39697] doi:10.1038/s41467-022-35119-2 [paper, repository]

Hippocampus as a sorter and reverberatory integrator of sensory inputs.

Journal: Nature communications

Authors' code: IdlingBrainUT/Nomoto2022_NatureCommunications (no license), Zenodo 7293824 (CC-BY-4.0)

Status: code verified, 93 files readable, 4 matches

[39698] doi:10.1038/s41598-022-24709-1 [paper, repository]

Local neuroplasticity in adult glaucomatous visual cortex.

Journal: Scientific reports

Authors' code: Joana-Carvalho/Micro-Probing (no license), Joana-Carvalho/FMRI-based-Visual-field-Reconstruction (no license)

Status: code verified, 7 files readable

[39699] doi:10.1073/pnas.2209960119 [paper, repository]

Distinct patterns of cortical manifold expansion and contraction underlie human sensorimotor adaptation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: danjgale/adaptation-manifolds (MIT)

Status: code verified, 20 files readable, 7 matches

[39700] doi:10.1159/000528587 [paper, data]

Neurochemical Profile of BRAFV600E/AktT308D/S473D Mouse Gangliogliomas Reveals Impaired GABAergic System Inhibition.

Journal: Developmental neuroscience

Status: data only, 1 dataset cited

[39701] doi:10.1177/02692155221144554 [paper, data]

A scoping review to identify process and outcome measures used in acceptance and commitment therapy research, with adults with acquired neurological conditions.

Journal: Clinical rehabilitation

Status: data only, 1 dataset cited

[39702] doi:10.1186/s12929-022-00890-3 [paper, data]

Modulation of histone H3K4 dimethylation by spermidine ameliorates motor neuron survival and neuropathology in a mouse model of ALS.

Journal: Journal of biomedical science

Status: data only, 1 dataset cited

[39703] doi:10.1186/s13229-022-00528-z [paper]

Experience-dependent changes in hippocampal spatial activity and hippocampal circuit function are disrupted in a rat model of Fragile X Syndrome.

Journal: Molecular autism

Status: code on request

[39704] doi:10.1242/dev.201286 [paper, data]

Fine-tuning of mTOR signaling by the UBE4B-KLHL22 E3 ubiquitin ligase cascade in brain development.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[39705] doi:10.1371/journal.pcbi.1010764 [paper, repository]

Improved visualization of high-dimensional data using the distance-of-distance transformation.

Journal: PLoS computational biology

Authors' code: Jinke-Liu/DoD-tSNE (no license), Jinke-Liu/Distance-of-Distance-tSNE (no license)

Status: code verified, 5 files readable, 3 matches

[39706] doi:10.14802/jmd.22082 [paper, data]

Multiple System Atrophy: Advances in Diagnosis and Therapy.

Journal: Journal of movement disorders

Status: data only, 3 datasets cited

[39707] doi:10.26508/lsa.202201616 [paper, data]

Integrin β1/FAK/SRC signal pathway is involved in autism spectrum disorder in <i>Tspan7</i> knockout rats.

Journal: Life science alliance

Status: data only, 1 dataset cited

[39708] doi:10.3389/fimmu.2022.1082546 [paper, repository]

Systematic analysis of brain and skull ischemic injury expression profiles reveals associations of the tumor immune microenvironment and cell death with ischemic stroke.

Journal: Frontiers in immunology

Authors' code: FengWeiLab/Stroke_cancer_immune (no license), figshare 21203201 (CC-BY-4.0)

Status: code verified, 13 files readable, 5 matches

[39709] doi:10.3389/fnhum.2022.1019279 [paper, data]

Immediate effects of short-term meditation on sensorimotor rhythm-based brain-computer interface performance.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[39710] doi:10.3390/ani13010001 [paper]

Transposable Element Tissue-Specific Response to Temperature Stress in the Stenothermal Fish <i>Puntius tetrazona</i>.

Journal: Animals : an open access journal from MDPI

Status: data only

[39711] doi:10.3390/brainsci13010001 [paper, repository]

Optogenetic Suppression of Lateral Septum Somatostatin Neurons Enhances Hippocampus Cholinergic Theta Oscillations and Local Synchrony.

Journal: Brain sciences

Authors' code: kwikteam/klustakwik2 (BSD-3-Clause)

Status: code verified, 40 files readable

[39712] doi:10.7554/elife.71231 [paper, repository]

Desmosomal connectomics of all somatic muscles in an annelid larva.

Journal: eLife

Authors' code: catmaid.jekelylab.ex.ac.uk (no license), JekelyLab/Jasek_et_al (GPL-3.0)

Status: code verified, 51 files readable, 30 matches

[39713] doi:10.7554/elife.81282 [paper, repository]

Thalamocortical contributions to cognitive task activity.

Journal: eLife

Authors' code: HwangLabNeuroCogDynamics/ThalamicTaskHubs (MIT)

Status: code verified, 5 files readable, 7 matches

[39714] doi:10.7717/peerj-cs.1177 [paper, data]

Alzheimer's disease diagnosis and classification using deep learning techniques.

Journal: PeerJ. Computer science

Status: data only, 1 dataset cited

Monday, 19 December 2022 (27 papers)

[39715] doi:10.1016/j.crmeth.2022.100367 [paper, repository]

<i>In vitro</i>-derived medium spiny neurons recapitulate human striatal development and complexity at single-cell resolution.

Journal: Cell reports methods

Authors' code: theislab/scanpy (BSD-3-Clause), Teichlab/bbknn (MIT), paganilab/dellachiara_et_al_2021 (no license)

Status: code verified, 137 files readable, 2 matches

[39716] doi:10.1016/j.csbj.2022.12.026 [paper, data]

Electron microscopy reveals toroidal shape of master neuronal cell differentiator REST - RE1-silencing transcription factor.

Journal: Computational and structural biotechnology journal

Status: data only, 3 datasets cited

[39717] doi:10.1016/j.isci.2022.105837 [paper]

Neuron-glia interaction at the receptor level affects olfactory perception in adult <i>Drosophila</i>.

Journal: iScience

Status: code on request

[39718] doi:10.1016/j.isci.2022.105838 [paper]

3D blood-brain barrier-organoids as a model for Lyme neuroborreliosis highlighting genospecies dependent organotropism.

Journal: iScience

Status: code on request

[39719] doi:10.1021/acs.jmedchem.2c01411 [paper, data]

Microtubule-Stabilizing 1,2,4-Triazolo[1,5-<i>a</i>]pyrimidines as Candidate Therapeutics for Neurodegenerative Disease: Matched Molecular Pair Analyses and Computational Studies Reveal New Structure-Activity Insights.

Journal: Journal of medicinal chemistry

Status: data only, 2 datasets cited

[39720] doi:10.1038/s41380-022-01918-8 [paper, repository]

Predicting childhood and adolescent attention-deficit/hyperactivity disorder onset: a nationwide deep learning approach.

Journal: Molecular psychiatry

Authors' code: kmlstyle/ADHD-DNN (no license)

Status: code verified, 3 files readable, 3 matches

[39721] doi:10.1038/s41467-022-35324-z [paper, repository]

Rapid and reversible optogenetic silencing of synaptic transmission by clustering of synaptic vesicles.

Journal: Nature communications

Authors' code: dvettkoe/50-percent-tracked (MIT), shigekiwatanabe/SynapsEM (no license)

Status: code verified, 55 files readable, 2 matches

[39722] doi:10.1038/s41467-022-35527-4 [paper, data]

Hedgehog-mediated gut-taste neuron axis controls sweet perception in Drosophila.

Journal: Nature communications

Status: data only, 1 dataset cited

[39723] doi:10.1038/s41587-022-01535-4 [paper, repository]

Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag.

Journal: Nature biotechnology

Authors' code: mardzix/bcd_nano_CUTnTag (no license)

Status: code verified, 89 files readable, 7 matches

[39724] doi:10.1038/s41593-022-01221-3 [paper, data]

Microglia ferroptosis is regulated by SEC24B and contributes to neurodegeneration.

Journal: Nature neuroscience

Status: code on request, 12 datasets cited

[39725] doi:10.1038/s41598-022-26460-z [paper, repository]

On the cognitive mechanisms supporting prosocial disobedience in a post-genocidal context.

Journal: Scientific reports

Authors' code: OSF hmzy8 (no license)

Status: code verified, 5 files readable, 3 matches

[39726] doi:10.1038/s43587-022-00335-4 [paper, repository]

Cell-type-specific aging clocks to quantify aging and rejuvenation in neurogenic regions of the brain.

Journal: Nature aging

Authors' code: sunericd/svz_singlecell_aging_clocks (no license)

Status: code verified, 98 files readable, 21 matches

[39727] doi:10.1073/pnas.2202962119 [paper, repository]

Heterogeneous stochastic bifurcations explain intrinsic oscillatory patterns in entorhinal cortical stellate cells.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7413666 (CC-BY-4.0), Zenodo 7413665 (CC-BY-4.0)

Status: code verified, 70 files readable, 2 matches

[39728] doi:10.1073/pnas.2213847119 [paper, data]

Hierarchical unimodal processing within the primary somatosensory cortex during a bimodal detection task.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[39729] doi:10.1111/bpa.13138 [paper]

Design and application of a customizable relational DataBase to assess clinicopathological correlations and concomitant pathology in neurodegenerative diseases.

Journal: Brain pathology (Zurich, Switzerland)

Status: code on request

[39730] doi:10.1155/2022/4114178 [paper, data]

Effects of Data Augmentation with the BNNSMOTE Algorithm in Seizure Detection Using 1D-MobileNet.

Journal: Journal of healthcare engineering

Status: data only, 1 dataset cited

[39731] doi:10.1159/000528701 [paper, data]

Association of Body Shape Index with Cerebral Small Vessel Disease.

Journal: Obesity facts

Status: data only, 1 dataset cited

[39732] doi:10.1371/journal.pcbi.1010722 [paper, repository]

tension: A Python package for FORCE learning.

Journal: PLoS computational biology

Authors' code: zhenruiliao/tension (MIT)

Status: code verified, 32 files readable, 13 matches

[39733] doi:10.1371/journal.pone.0279003 [paper, repository]

Bionic sensing system and characterization of exhaled nitric oxide detection based on canine olfaction.

Journal: PloS one

Authors' code: figshare 21517998 (CC0-1.0)

Status: code verified

[39734] doi:10.1523/jneurosci.1350-22.2022 [paper, repository]

Subtype-Specific Roles of Ellipsoid Body Ring Neurons in Sleep Regulation in <i>Drosophila</i>.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Griffith-Lab/Fly_Sleep_Probability (no license)

Status: code verified, 30 files readable

[39735] doi:10.1523/jneurosci.1546-22.2022 [paper, repository]

The Spatiotemporal Neural Dynamics of Object Recognition for Natural Images and Line Drawings.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Singerjohannes/object_drawing_dynamics (no license)

Status: code verified, 40 files readable, 4 matches

[39736] doi:10.3389/fneur.2022.960760 [paper, repository]

Confounds in neuroimaging: A clear case of sex as a confound in brain-based prediction.

Journal: Frontiers in neurology

Authors' code: qingyuzhao/br-net (no license)

Status: code verified, 6 files readable

[39737] doi:10.3389/fphys.2022.1066467 [paper, data]

Cinacalcet inhibition of neuronal action potentials preferentially targets the fast inactivated state of voltage-gated sodium channels.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[39738] doi:10.3390/diagnostics12123216 [paper, repository]

Deep Learning Classifies Low- and High-Grade Glioma Patients with High Accuracy, Sensitivity, and Specificity Based on Their Brain White Matter Networks Derived from Diffusion Tensor Imaging.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: in.mathworks.com/products/matlab.html (no license), tensorflow.org (no license)

Status: code verified

[39739] doi:10.3390/mi13122259 [paper, repository]

Dynamic and Functional Alterations of Neuronal Networks In Vitro upon Physical Damage: A Proof of Concept.

Journal: Micromachines

Authors' code: Zenodo 1119026 (MIT)

Status: code verified, 949 files readable

[39740] doi:10.7554/elife.82756 [paper, repository]

Network instability dynamics drive a transient bursting period in the developing hippocampus in vivo.

Journal: eLife

Authors' code: kirmselab (no license), kirmselab/CATHARSiS (GPL-3.0)

Status: code verified, 32 files readable, 7 matches

[39741] doi:10.7554/elife.83992 [paper, repository]

Aurora A and cortical flows promote polarization and cytokinesis by inducing asymmetric ECT-2 accumulation.

Journal: eLife

Authors' code: Zenodo 7415982 (CC-BY-4.0)

Status: code verified, 1 file readable

Sunday, 18 December 2022 (5 papers)

[39742] doi:10.1002/advs.202203699 [paper, repository]

The Single-Cell Landscape of Intratumoral Heterogeneity and The Immunosuppressive Microenvironment in Liver and Brain Metastases of Breast Cancer.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: dylkot/cNMF (MIT)

Status: code verified, 19 files readable

[39743] doi:10.1007/s12264-022-00993-9 [paper, data]

Leaky Gut Plays a Critical Role in the Pathophysiology of Autism in Mice by Activating the Lipopolysaccharide-Mediated Toll-Like Receptor 4-Myeloid Differentiation Factor 88-Nuclear Factor Kappa B Signaling Pathway.

Journal: Neuroscience bulletin

Status: data only, 7 datasets cited

[39744] doi:10.1016/j.neuroimage.2022.119826 [paper]

Denoising of diffusion MRI in the cervical spinal cord - effects of denoising strategy and acquisition on intra-cord contrast, signal modeling, and feature conspicuity.

Journal: NeuroImage

Status: code on request

[39745] doi:10.3390/cells11244116 [paper, data]

Human PSEN1 Mutant Glia Improve Spatial Learning and Memory in Aged Mice.

Journal: Cells

Status: data only, 1 dataset cited

[39746] doi:10.3390/cells11244118 [paper, data]

CBP and p300 Jointly Maintain Neural Progenitor Viability but Play Unique Roles in the Differentiation of Neural Lineages.

Journal: Cells

Status: data only, 1 dataset cited

Saturday, 17 December 2022 (11 papers)

[39747] doi:10.1002/hbm.26181 [paper]

A computational study on the optimization of transcranial temporal interfering stimulation with high-definition electrodes using unsupervised neural networks.

Journal: Human brain mapping

Status: code on request

[39748] doi:10.1007/s00521-022-08125-0 [paper, repository]

Neuroevolution gives rise to more focused information transfer compared to backpropagation in recurrent neural networks.

Journal: Neural computing & applications

Authors' code: Hintzelab/NCAA-D-21-01407R2 (no license)

Status: code verified, 2 files readable

[39749] doi:10.1016/j.isci.2022.105827 [paper, repository]

Virtual accident curb risk habituation in workers by restoring sensory responses to real-world warning.

Journal: iScience

Authors' code: moeinrazavi/EEG-ASR-Python (no license)

Status: code verified, 8 files readable, 2 matches

[39750] doi:10.1016/j.isci.2022.105829 [paper]

The prelimbic cortex regulates itch processing by controlling attentional bias.

Journal: iScience

Status: code on request

[39751] doi:10.1038/s41398-022-02283-4 [paper, repository]

Effect of methylphenidate on functional controllability: a preliminary study in medication-naïve children with ADHD.

Journal: Translational psychiatry

Authors' code: Zenodo 2560743 (CC-BY-4.0), cran.r-project.org/package=netcontrol (no license), cohenlabunc/clpipe (MIT)

Status: code verified, 166 files readable, 2 matches

[39752] doi:10.1038/s41597-022-01887-1 [paper, repository]

Comparative transcriptome profiles of four sexually size dimorphic fish.

Journal: Scientific data

Authors' code: doi:10.6084/m9.figshare.c.6244080.v2 (no license)

Status: code found, still to be checked

[39753] doi:10.1038/s41598-022-26506-2 [paper, data]

The effects of temperature stress and population origin on the thermal sensitivity of Lymantria dispar L. (Lepidoptera: Erebidae) larvae.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39754] doi:10.1038/s42003-022-04347-z [paper, repository]

Personalized visual encoding model construction with small data.

Journal: Communications biology

Authors' code: zijin-gu/linear-ensemble (no license), Zenodo 7374798 (other-open)

Status: code verified, 13 files readable

[39755] doi:10.1186/s12974-022-02664-y [paper, data]

Saturated very long-chain fatty acids regulate macrophage plasticity and invasiveness.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[39756] doi:10.1186/s13024-022-00589-x [paper, data]

Amyloid-beta and tau pathologies act synergistically to induce novel disease stage-specific microglia subtypes.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[39757] doi:10.1186/s13046-022-02543-7 [paper, data]

A novel lncRNA MDHDH suppresses glioblastoma multiforme by acting as a scaffold for MDH2 and PSMA1 to regulate NAD+ metabolism and autophagy.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 7 datasets cited

Friday, 16 December 2022 (27 papers)

[39758] doi:10.1007/s00213-022-06284-5 [paper, repository]

Thalamus sends information about arousal but not valence to the amygdala.

Journal: Psychopharmacology

Authors' code: Tyelab/HAC (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

[39759] doi:10.1007/s10827-022-00839-3 [paper, repository]

Neural manifold analysis of brain circuit dynamics in health and disease.

Journal: Journal of computational neuroscience

Authors' code: schultzlab/Neural_Manifolds (no license)

Status: code verified, 3 files readable, 4 matches

[39760] doi:10.1016/j.dib.2022.108824 [paper, data]

Cerebral and splanchnic near-infrared spectroscopic dataset in premature newborns receiving packed red blood cell transfusion.

Journal: Data in brief

Status: data only, 1 dataset cited

[39761] doi:10.1016/j.heliyon.2022.e12202 [paper, data]

Revealing genetic links of Type 2 diabetes that lead to the development of Alzheimer's disease.

Journal: Heliyon

Status: data only, 1 dataset cited

[39762] doi:10.1016/j.isci.2022.105814 [paper, repository]

Cholinergic activity reflects reward expectations and predicts behavioral responses.

Journal: iScience

Authors' code: hangyabalazs/cholinergic_Pavlovian_analysis (CC-BY-NC-SA-4.0), hangyabalazs/CellBase (no license)

Status: code verified, 387 files readable, 22 matches

[39763] doi:10.1016/j.isci.2022.105818 [paper, repository]

Lack of action monitoring as a prerequisite for habitual and chunked behavior: Behavioral and neural correlates.

Journal: iScience

Authors' code: doi:10.12751/g-node.p53gw9 (no license)

Status: code verified

[39764] doi:10.1038/s41598-022-26104-2 [paper, repository]

Preparatory attention to visual features primarily relies on non-sensory representation.

Journal: Scientific reports

Authors' code: OSF 3s98a (no license)

Status: code verified, 13 files readable, 1 match

[39765] doi:10.1038/s41598-022-26204-z [paper, data]

Radial diffusivity reflects general decline rather than specific cognitive deterioration in multiple sclerosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39766] doi:10.1038/s41598-022-26347-z [paper, repository]

Phase-adaptive brain stimulation of striatal D1 medium spiny neurons in dopamine-depleted mice.

Journal: Scientific reports

Authors' code: narayanan.lab.uiowa.edu (no license)

Status: code verified

[39767] doi:10.1111/ejn.15880 [paper, repository]

Medio-dorsal thalamic dysconnectivity in chronic knee pain: A possible mechanism for negative affect and pain comorbidity.

Journal: The European journal of neuroscience

Authors' code: Zenodo 3624973 (CC-BY-4.0), spmic-uon/brc_pipeline (no license)

Status: code verified, 120 files readable, 5 matches

[39768] doi:10.1126/sciadv.ade7209 [paper, repository]

Depolarization block in olfactory sensory neurons expands the dimensionality of odor encoding.

Journal: Science advances

Authors' code: davidtadres/ob1_gui (no license), davidtadres/hdbscan_spike_sorter (no license), LouisLab/depolarization_block_publication (no license)

Status: code verified, 76 files readable, 12 matches

[39769] doi:10.1162/nol_a_00081 [paper, repository]

Causal Contributions of the Domain-General (Multiple Demand) and the Language-Selective Brain Networks to Perceptual and Semantic Challenges in Speech Comprehension.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF fm67z (no license)

Status: code verified, 4 files readable, 8 matches

[39770] doi:10.1186/s12862-022-02099-2 [paper, data]

Unparalleled details of soft tissues in a Cretaceous ant.

Journal: BMC ecology and evolution

Status: data only, 1 dataset cited

[39771] doi:10.1186/s12974-022-02662-0 [paper, data]

Lung inflammation induced by silica particles triggers hippocampal inflammation, synapse damage and memory impairment in mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[39772] doi:10.1371/journal.pcbi.1010762 [paper, repository]

Interacting active surfaces: A model for three-dimensional cell aggregates.

Journal: PLoS computational biology

Authors' code: torressancheza/ias (MIT)

Status: code verified, 63 files readable, 4 matches

[39773] doi:10.1371/journal.pgen.1010552 [paper, data]

Retraction: Molecular predictors of brain metastasis-related microRNAs in lung adenocarcinoma.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[39774] doi:10.1371/journal.pone.0276975 [paper, data]

Brain correlates of speech perception in schizophrenia patients with and without auditory hallucinations.

Journal: PloS one

Status: data only, 2 datasets cited

[39775] doi:10.1371/journal.pone.0277257 [paper, repository]

Application of machine learning and complex network measures to an EEG dataset from ayahuasca experiments.

Journal: PloS one

Authors' code: Carol180619/Paper-ayahuasca (no license)

Status: dead link

[39776] doi:10.3389/fncom.2022.1004301 [paper, data]

Feature optimization based on improved novel global harmony search algorithm for motor imagery electroencephalogram classification.

Journal: Frontiers in computational neuroscience

Status: data only, 2 datasets cited

[39777] doi:10.3390/brainsci12121726 [paper, repository]

Local Field Potential-Guided Contact Selection Using Chronically Implanted Sensing Devices for Deep Brain Stimulation in Parkinson's Disease.

Journal: Brain sciences

Authors' code: neuromodulation/perceive (Apache-2.0), OSF 94yfw (no license)

Status: code verified, 94 files readable, 5 matches

[39778] doi:10.3390/genes13122380 [paper, data]

Insight into Glyproline Peptides' Activity through the Modulation of the Inflammatory and Neurosignaling Genetic Response Following Cerebral Ischemia-Reperfusion.

Journal: Genes

Status: data only, 1 dataset cited

[39779] doi:10.3390/ijms232416046 [paper, data]

Connexin 30 Deficiency Ameliorates Disease Progression at the Early Phase in a Mouse Model of Amyotrophic Lateral Sclerosis by Suppressing Glial Inflammation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39780] doi:10.3390/ijms232416084 [paper, data]

Enhancing Motor and Sensory Axon Regeneration after Peripheral Nerve Injury Using Bioluminescent Optogenetics.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[39781] doi:10.3390/insects13121163 [paper, repository]

Comparative Silk Transcriptomics Illuminates Distinctive Impact of Artificial Selection in Silkworm Modern Breeding.

Journal: Insects

Authors' code: COMBINE-lab/salmon (BSD-3-Clause)

Status: code verified, 95 files readable

[39782] doi:10.3390/s22249914 [paper, data]

Fast Sleep Stage Classification Using Cascaded Support Vector Machines with Single-Channel EEG Signals.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[39783] doi:10.3758/s13428-022-02015-y [paper, repository]

Rapid, reliable mobile assessment of affect-related motor processing.

Journal: Behavior research methods

Authors' code: florencelarkin/kp_kd_fit (no license)

Status: code verified, 2 files readable

[39784] doi:10.7554/elife.78606 [paper, repository]

Population codes enable learning from few examples by shaping inductive bias.

Journal: eLife

Authors' code: Pehlevan-Group/sample_efficient_pop_codes (MIT)

Status: code verified, 25 files readable, 4 matches

Thursday, 15 December 2022 (32 papers)

[39785] doi:10.1016/j.stemcr.2022.11.011 [paper, repository]

What has single-cell transcriptomics taught us about long non-coding RNAs in the ventricular-subventricular zone?

Journal: Stem cell reports

Authors' code: JemimaBecker/Single-cell-sequencing-in-the-V-SVZ (Apache-2.0)

Status: empty repository, 2 files readable

[39786] doi:10.1038/s41467-022-34938-7 [paper, repository]

Sleep-like unsupervised replay reduces catastrophic forgetting in artificial neural networks.

Journal: Nature communications

Authors' code: tmtadros/SleepReplayConsolidation (no license)

Status: code verified, 139 files readable, 4 matches

[39787] doi:10.1038/s41467-022-35303-4 [paper, repository]

Nr6a1 controls Hox expression dynamics and is a master regulator of vertebrate trunk development.

Journal: Nature communications

Authors' code: jpouch/qPCR-Biomark (CC0-1.0), ACCLAB/dabestr (Apache-2.0)

Status: code verified, 54 files readable

[39788] doi:10.1038/s41593-022-01213-3 [paper, data]

Serotonin regulation of behavior via large-scale neuromodulation of serotonin receptor networks.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

[39789] doi:10.1038/s41598-022-24640-5 [paper, repository]

Texture recognition based on multi-sensory integration of proprioceptive and tactile signals.

Journal: Scientific reports

Authors' code: Research-lab-KUMS/Texture-recognition (no license)

Status: code verified

[39790] doi:10.1038/s41598-022-26070-9 [paper, data]

Temporal judgments of actions following unilateral brain damage.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39791] doi:10.1038/s42003-022-04326-4 [paper, data]

Beta rhythmicity in human motor cortex reflects neural population coupling that modulates subsequent finger coordination stability.

Journal: Communications biology

Status: data only, 1 dataset cited

[39792] doi:10.1038/s42003-022-04329-1 [paper, repository]

Behavioral and neuro-cognitive bases for emergence of norms and socially shared realities via dynamic interaction.

Journal: Communications biology

Authors' code: OSF tfy9s (no license)

Status: code verified, 14 files readable, 1 match

[39793] doi:10.1038/s42003-022-04331-7 [paper, repository]

Neural complexity is a common denominator of human consciousness across diverse regimes of cortical dynamics.

Journal: Communications biology

Authors' code: jfrohlich/angelman-consciousness (no license), Zenodo 7428309 (other-open)

Status: code verified, 128 files readable, 34 matches

[39794] doi:10.1101/2022.12.15.519769 [paper, data]

A reductionist paradigm for high-throughput behavioural fingerprinting in <i>Drosophila melanogaster</i>

Journal: bioRxiv (preprint)

Status: data only, 4 datasets cited

[39795] doi:10.1186/s12883-022-02987-6 [paper, data]

A case report of neuromyelitis optica spectrum disorder induced by pembrolizumab treatment for lung adenocarcinoma: a clinical and immunohistochemical study.

Journal: BMC neurology

Status: data only, 3 datasets cited

[39796] doi:10.1186/s12967-022-03710-2 [paper, data]

Sleep patterns correlates with the efficacy of tDCS on post-stroke patients with prolonged disorders of consciousness.

Journal: Journal of translational medicine

Status: data only, 2 datasets cited

[39797] doi:10.1186/s12987-022-00382-4 [paper, data]

Measurements of cerebrospinal fluid production: a review of the limitations and advantages of current methodologies.

Journal: Fluids and barriers of the CNS

Status: data only, 2 datasets cited

[39798] doi:10.1371/journal.pbio.3001861 [paper, repository]

Integrated neural dynamics of sensorimotor decisions and actions.

Journal: PLoS biology

Authors' code: figshare 20805586 (CC-BY-4.0)

Status: code verified, 22 files readable, 6 matches

[39799] doi:10.1371/journal.pone.0272177 [paper, data]

Imp is required for timely exit from quiescence in Drosophila type II neuroblasts.

Journal: PloS one

Status: data only, 1 dataset cited

[39800] doi:10.1371/journal.pone.0276721 [paper, repository]

Greater volumes of a callosal sub-region terminating in posterior language-related areas predict a stronger degree of language lateralization: A tractography study.

Journal: PloS one

Authors' code: richarddmorey/BayesFactor (no license)

Status: code verified, 93 files readable, 2 matches

[39801] doi:10.18632/aging.204437 [paper, data]

Epigenetic aging is associated with aberrant neural oscillatory dynamics serving visuospatial processing in people with HIV.

Journal: Aging

Status: data only, 1 dataset cited

[39802] doi:10.3389/fendo.2022.1057566 [paper, repository]

Lower hypothalamus subunit volumes link with impaired long-term body weight gain after preterm birth.

Journal: Frontiers in endocrinology

Authors' code: surfer.nmr.mgh.harvard.edu/fswiki/hypothalamicsubunits (no license)

Status: code verified

[39803] doi:10.3389/fimmu.2022.1090305 [paper, data]

Association of the systemic immune-inflammation index (SII) and clinical outcomes in patients with stroke: A systematic review and meta-analysis.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[39804] doi:10.3389/fncom.2022.990892 [paper, data]

Analysis of instantaneous brain interactions contribution to a motor imagery classification task.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[39805] doi:10.3389/fnins.2022.999346 [paper, repository]

Common targetable inflammatory pathways in brain transcriptome of autism spectrum disorders and Tourette syndrome.

Journal: Frontiers in neuroscience

Authors' code: sarahalshammery/ASDTS (CC-BY-4.0)

Status: empty repository, 1 file readable

[39806] doi:10.3389/fnmol.2022.1004375 [paper, data]

Effects of N-methyl-D-aspartate receptor knockdown and hypoxia/reoxygenation injury on the neuronal proteome and transcriptome.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[39807] doi:10.3389/fnmol.2022.1044022 [paper]

Transcriptome-wide association study reveals cholesterol metabolism gene Lpl is a key regulator of cognitive dysfunction.

Journal: Frontiers in molecular neuroscience

Status: data only

[39808] doi:10.3389/fpsyg.2022.1010708 [paper, repository]

The effects of grammatical gender on the processing of occupational role names in Slovene: An event-related potential study.

Journal: Frontiers in psychology

Authors' code: OSF mazhu (no license)

Status: code verified, 10 files readable, 4 matches

[39809] doi:10.3389/fpsyg.2022.958787 [paper, repository]

Edges and gradients in lightness illusions: Role of optical veiling glare.

Journal: Frontiers in psychology

Authors' code: bbonik/retinal-contrast-glare (MIT)

Status: code verified, 7 files readable, 7 matches

[39810] doi:10.3390/brainsci12121718 [paper, data]

Role for Astrocytes in mGluR-Dependent LTD in the Neocortex and Hippocampus.

Journal: Brain sciences

Status: data only, 1 dataset cited

[39811] doi:10.3390/cells11244067 [paper, data]

Paclitaxel Inhibits KCNQ Channels in Primary Sensory Neurons to Initiate the Development of Painful Peripheral Neuropathy.

Journal: Cells

Status: data only, 1 dataset cited

[39812] doi:10.3390/e24121830 [paper, repository]

Multidimensional Feature in Emotion Recognition Based on Multi-Channel EEG Signals.

Journal: Entropy (Basel, Switzerland)

Authors' code: lixiaonian2022/code (no license)

Status: code verified

[39813] doi:10.3390/jimaging8120328 [paper, repository]

A Framework for Enabling Unpaired Multi-Modal Learning for Deep Cross-Modal Hashing Retrieval.

Journal: Journal of imaging

Authors' code: MikelWL/UMML (no license)

Status: code verified, 10 files readable

[39814] doi:10.3390/s22249875 [paper, repository]

XDecompo: Explainable Decomposition Approach in Convolutional Neural Networks for Tumour Image Classification.

Journal: Sensors (Basel, Switzerland)

Authors' code: Asmaa-AbbasHassan/XDecompo (no license)

Status: dead link

[39815] doi:10.7554/elife.77945 [paper, repository]

Automated hippocampal unfolding for morphometry and subfield segmentation with HippUnfold.

Journal: eLife

Authors' code: khanlab/hippunfold (MIT), Zenodo 7063098 (other-open), Zenodo 6360647 (CC-BY-4.0), Zenodo 4488249 (MIT)

Status: code verified, 86 files readable, 6 matches

[39816] doi:10.7554/elife.79045 [paper, repository]

Neural representations of naturalistic events are updated as our understanding of the past changes.

Journal: eLife

Authors' code: azadbood/sixthsense (GPL-3.0)

Status: code verified, 6 files readable

Wednesday, 14 December 2022 (27 papers)

[39817] doi:10.1002/hbm.26174 [paper, repository]

3D-MASNet: 3D mixed-scale asymmetric convolutional segmentation network for 6-month-old infant brain MR images.

Journal: Human brain mapping

Authors' code: RicardoZiTseng/3D-MASNet (Apache-2.0)

Status: code verified, 16 files readable, 2 matches

[39818] doi:10.1007/s10548-022-00932-x [paper, repository]

Improved Selectivity in 7 T Digit Mapping Using VASO-CBV.

Journal: Brain topography

Authors' code: SteenMoeller/NORDIC_Raw (other)

Status: code verified, 7 files readable

[39819] doi:10.1016/j.heliyon.2022.e12287 [paper, repository]

Reconstructing sources location of visual color cortex by the task-irrelevant visual stimuli through machine learning decoding.

Journal: Heliyon

Authors' code: scidb.cn/s/m63um3 (no license)

Status: code verified

[39820] doi:10.1021/acs.jmedchem.2c01693 [paper, repository]

The Identification of Potent, Selective, and Brain Penetrant PI5P4Kγ Inhibitors as In Vivo-Ready Tool Molecules.

Journal: Journal of medicinal chemistry

Authors' code: rdkit/rdkit (BSD-3-Clause)

Status: code verified, 1,695 files readable, 4 matches

[39821] doi:10.1038/s41398-022-02278-1 [paper, data]

Association of circadian rhythms with brain disorder incidents: a prospective cohort study of 72242 participants.

Journal: Translational psychiatry

Status: code on request, 1 dataset cited

[39822] doi:10.1038/s41467-022-34510-3 [paper, repository]

Optimal deep brain stimulation sites and networks for stimulation of the fornix in Alzheimer's disease.

Journal: Nature communications

Authors' code: netstim/SlicerNetstim (BSD-3-Clause), OSF bckuf (no license), leaddbs/leaddbs (GPL-3.0)

Status: code verified, 2,046 files readable, 8 matches

[39823] doi:10.1038/s41467-022-35367-2 [paper, repository]

In-depth mapping of protein localizations in whole tissue by micro-scaffold assisted spatial proteomics (MASP).

Journal: Nature communications

Authors' code: JunQu-Lab/MAsP (Apache-2.0), JunQu-Lab/UHRIonStarApp (other), Zenodo 7320146 (other-open)

Status: code verified, 30 files readable, 5 matches

[39824] doi:10.1038/s41467-022-35518-5 [paper, data]

St18 specifies globus pallidus projection neuron identity in MGE lineage.

Journal: Nature communications

Status: data only, 1 dataset cited

[39825] doi:10.1038/s41586-022-05526-y [paper, repository]

Primate gastrulation and early organogenesis at single-cell resolution.

Journal: Nature

Authors' code: ecamacho90/BiologicalImageProcessing (GPL-3.0), Zenodo 7367663 (CC-BY-4.0)

Status: code verified, 97 files readable

[39826] doi:10.1038/s41586-022-05533-z [paper, repository]

Cortical-hippocampal coupling during manifold exploration in motor cortex.

Journal: Nature

Authors' code: kimjack0/Sleep_Oscillation_Detection (no license)

Status: code verified, 15 files readable, 3 matches

[39827] doi:10.1038/s41598-022-25423-8 [paper, repository]

Predicting multipotency of human adult stem cells derived from various donors through deep learning.

Journal: Scientific reports

Authors' code: kukionfr/VAMPIRE_open (GPL-3.0)

Status: code verified, 22 files readable

[39828] doi:10.1093/braincomms/fcac327 [paper, repository]

Behavioural and neural structure of fluent speech production deficits in aphasia.

Journal: Brain communications

Authors' code: dorianps/LESYMAP (Apache-2.0)

Status: code verified, 40 files readable, 2 matches

[39829] doi:10.1093/braincomms/fcac329 [paper, repository]

Changes in both top-down and bottom-up effective connectivity drive visual hallucinations in Parkinson's disease.

Journal: Brain communications

Authors' code: gecthomas/Spectral_DCM_in_PD_VH (no license)

Status: code verified, 5 files readable, 3 matches

[39830] doi:10.1093/schizbullopen/sgac074 [paper, repository]

Belief Updating in Subclinical and Clinical Delusions.

Journal: Schizophrenia bulletin open

Authors' code: gitlab.ethz.ch/dandreea/apup (no license)

Status: dead link

[39831] doi:10.1098/rsif.2022.0557 [paper, data]

<i>In vivo</i> measurement of human brain material properties under quasi-static loading.

Journal: Journal of the Royal Society, Interface

Status: data only, 1 dataset cited

[39832] doi:10.1126/sciadv.add2185 [paper, repository]

Asymmetric signaling across the hierarchy of cytoarchitecture within the human connectome.

Journal: Science advances

Authors' code: rdgao/field-echos (no license), Zenodo 7133119 (other-open), lindenmp/nct_hierarchy (MIT), ncbi.nlm.nih.gov/projects/gap (no license), Zenodo 3672110 (other-open), dalejn/cleanbib (MIT)

Status: code verified, 137 files readable, 18 matches

[39833] doi:10.1186/s12974-022-02665-x [paper, data]

Sirtuin 5 aggravates microglia-induced neuroinflammation following ischaemic stroke by modulating the desuccinylation of Annexin-A1.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[39834] doi:10.1186/s13195-022-01131-3 [paper, data]

Deep learning-based speech analysis for Alzheimer's disease detection: a literature review.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[39835] doi:10.1186/s40478-022-01483-9 [paper, repository]

Genomic, transcriptomic and RNA editing analysis of human MM1 and VV2 sporadic Creutzfeldt-Jakob disease.

Journal: Acta neuropathologica communications

Authors' code: UniboDIFABiophysics/binaryVCF (no license)

Status: code verified, 2 files readable

[39836] doi:10.1186/s41232-022-00236-4 [paper, repository]

Subarachnoid hemorrhage triggers neuroinflammation of the entire cerebral cortex, leading to neuronal cell death.

Journal: Inflammation and regeneration

Authors' code: yo-aka-gene/yamada_SAH (no license)

Status: code verified, 8 files readable, 2 matches

[39837] doi:10.1371/journal.pcbi.1010759 [paper, repository]

Sparse RNNs can support high-capacity classification.

Journal: PLoS computational biology

Authors' code: DenisTurcu/SparseRNN (MIT)

Status: code verified, 18 files readable, 1 match

[39838] doi:10.1523/jneurosci.1736-22.2022 [paper, repository]

Tilt in Place Microscopy: a Simple, Low-Cost Solution to Image Neural Responses to Body Rotations.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF 8rbtf (no license)

Status: code verified, 24 files readable, 13 matches

[39839] doi:10.3389/fimmu.2022.1044544 [paper, data]

The immune landscape of high-grade brain tumor after treatment with immune checkpoint blockade.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[39840] doi:10.3389/fncel.2022.1074304 [paper, repository]

Endogenous tagging of Unc-13 reveals nanoscale reorganization at active zones during presynaptic homeostatic potentiation.

Journal: Frontiers in cellular neuroscience

Authors' code: scikit-learn-contrib/hdbscan (BSD-3-Clause)

Status: code verified, 33 files readable, 2 matches

[39841] doi:10.3389/fphar.2022.1022863 [paper, data]

Heightened cocaine-seeking in male rats associates with a distinct transcriptomic profile in the medial prefrontal cortex.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[39842] doi:10.3390/ijms232415928 [paper, repository]

Novel Algorithm of Network Calcium Dynamics Analysis for Studying the Role of Astrocytes in Neuronal Activity in Alzheimer's Disease Models.

Journal: International journal of molecular sciences

Authors' code: TVK-dev/paper_dynamic_graph_astro_neuro_ab_fad (no license), TVK-dev/TruEvent (no license)

Status: code verified, 1 file readable

[39843] doi:10.7554/elife.80881 [paper, repository]

The injured sciatic nerve atlas (iSNAT), insights into the cellular and molecular basis of neural tissue degeneration and regeneration.

Journal: eLife

Authors' code: GigerLab/iSNAT (GPL-3.0)

Status: code verified, 12 files readable, 12 matches

Tuesday, 13 December 2022 (19 papers)

[39844] doi:10.1002/brb3.2828 [paper, data]

Nutrition claims influence expectations about food attributes, attenuate activity in reward-associated brain regions during tasting, but do not impact pleasantness.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[39845] doi:10.1016/j.devcel.2022.11.016 [paper, repository]

Developmental cell fate choice in neural tube progenitors employs two distinct cis-regulatory strategies.

Journal: Developmental cell

Authors' code: Zenodo 2634132 (other-open), Zenodo 3240506 (CC-BY-4.0), Zenodo 1400710 (MIT), tiagu (no license), MJDelas/tdTom_LinTracing (no license), MJDelas/Neural_DV_ATAC (no license)

Status: code verified, 58 files readable, 11 matches

[39846] doi:10.1038/s41467-022-35314-1 [paper, repository]

Deep brain stimulation creates informational lesion through membrane depolarization in mouse hippocampus.

Journal: Nature communications

Authors' code: HanLabBU/Lowet-Nature-Communication-2022 (MIT)

Status: code verified, 13 files readable

[39847] doi:10.1038/s41467-022-35384-1 [paper, repository]

Cell-type specific profiling of histone post-translational modifications in the adult mouse striatum.

Journal: Nature communications

Authors' code: HellerLAbeats/ICuRuS (MIT)

Status: code verified, 18 files readable, 6 matches

[39848] doi:10.1073/pnas.2214285119 [paper, data]

A smartphone intervention that enhances real-world memory and promotes differentiation of hippocampal activity in older adults.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[39849] doi:10.1098/rstb.2021.0459 [paper, data]

Looking at the Ebbinghaus illusion: differences in neurocomputational requirements, not gaze-mediated attention, explain a classic perception-action dissociation.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 2 datasets cited

[39850] doi:10.1111/cns.14052 [paper, data]

Downregulation of ADAMTS3 Suppresses Stemness and Tumorigenicity in Glioma Stem Cell.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[39851] doi:10.1111/gbb.12832 [paper, data]

Hippocampal RNA sequencing in mice selectively bred for high and low activity.

Journal: Genes, brain, and behavior

Status: data only, 1 dataset cited

[39852] doi:10.1111/gbb.12835 [paper, repository]

TTLL11 gene is associated with sustained attention performance and brain networks: A genome-wide association study of a healthy Chinese sample.

Journal: Genes, brain, and behavior

Authors' code: thewonlab/H-MAGMA (no license)

Status: code verified, 7 files readable

[39853] doi:10.1159/000527739 [paper, data]

Global Cortical Atrophy Is Associated with an Unfavorable Outcome in Stroke Patients on Oral Anticoagulation.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[39854] doi:10.1186/s13024-022-00584-2 [paper, repository]

Single-cell microglial transcriptomics during demyelination defines a microglial state required for lytic carcass clearance.

Journal: Molecular neurodegeneration

Authors' code: aertslab/pySCENIC (GPL-3.0)

Status: code verified, 48 files readable, 3 matches

[39855] doi:10.1371/journal.pbio.3001863 [paper, repository]

APOE alleles are associated with sex-specific structural differences in brain regions affected in Alzheimer's disease and related dementia.

Journal: PLoS biology

Authors' code: Zenodo 7126809 (other-open), MRCIEU/PHESANT (MIT)

Status: code verified, 57 files readable

[39856] doi:10.1371/journal.pone.0278874 [paper, data]

Multi-layer perceptron classification & quantification of neuronal survival in hypoxic-ischemic brain image slices using a novel gradient direction, grey level co-occurrence matrix image training.

Journal: PloS one

Status: data only, 1 dataset cited

[39857] doi:10.3389/fgene.2022.1063233 [paper, repository]

Benchmarking automated cell type annotation tools for single-cell ATAC-seq data.

Journal: Frontiers in genetics

Authors' code: AprilYuge/ATAC-annotation-benchmark (no license)

Status: code verified, 16 files readable, 1 match

[39858] doi:10.3390/fractalfract6120737 [paper, data]

Scale-Free Functional Brain Networks Exhibit Increased Connectivity, Are More Integrated and Less Segregated in Patients with Parkinson's Disease following Dopaminergic Treatment.

Journal: Fractal and fractional

Status: data only, 1 dataset cited

[39859] doi:10.3390/ijms232415853 [paper, repository]

Specific Post-Translational Modifications of VDAC3 in ALS-SOD1 Model Cells Identified by High-Resolution Mass Spectrometry.

Journal: International journal of molecular sciences

Authors' code: dblyon/deamidation (MIT)

Status: code verified, 4 files readable

[39860] doi:10.3390/vetsci9120692 [paper, repository]

Multimodal Assessment of Bottlenose Dolphin Auditory Nuclei Using 7-Tesla MRI, Immunohistochemistry and Stereology.

Journal: Veterinary sciences

Authors' code: nlackermans/ackermans2022bovidtbi (no license), OSF zh4ra (no license)

Status: code verified, 2 files readable

[39861] doi:10.7554/elife.81976 [paper, repository]

Spinal premotor interneurons controlling antagonistic muscles are spatially intermingled.

Journal: eLife

Authors' code: marcobeato/Spinal_premotor_interneurons_controlling_antagonistic_muscles_are_spatially_intermingled (CC0-1.0), rronzano/spinal_premotor_interneurons_controlling_antagonistic_muscles_are_spatially_intermingled (no license)

Status: code verified, 97 files readable, 24 matches

[39862] doi:10.7554/elife.82031 [paper, repository]

T cells modulate the microglial response to brain ischemia.

Journal: eLife

Authors' code: Lieszlab/Benakis-et-al.-2022-eLife (no license)

Status: code verified, 3 files readable, 2 matches

Monday, 12 December 2022 (23 papers, 10 on this page)

[39863] doi:10.1016/j.xpro.2022.101846 [paper, repository]

Protocol for mouse optogenetic fMRI at ultrahigh magnetic fields.

Journal: STAR protocols

Authors' code: hyunjishim/KSG_lab (no license)

Status: empty repository, 1 file readable

[39864] doi:10.1038/s41380-022-01901-3 [paper, data]

In vivo white matter microstructure in adolescents with early-onset psychosis: a multi-site mega-analysis.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[39865] doi:10.1038/s41467-022-34889-z [paper, repository]

Brain metastatic outgrowth and osimertinib resistance are potentiated by RhoA in EGFR-mutant lung cancer.

Journal: Nature communications

Authors' code: czbiohub/scell_lung_adenocarcinoma (no license)

Status: code verified, 60 files readable, 1 match

[39866] doi:10.1038/s41467-022-35322-1 [paper, repository]

Broad misappropriation of developmental splicing profile by cancer in multiple organs.

Journal: Nature communications

Authors' code: hannenhalli-lab/AltSplDevCancer (no license), Zenodo 7325464 (other-open)

Status: code verified, 50 files readable, 10 matches

[39867] doi:10.1038/s41467-022-35406-y [paper, repository]

Tagging active neurons by soma-targeted Cal-Light.

Journal: Nature communications

Authors' code: knagahama1001/Hyungbae-Kwon-lab (no license)

Status: code verified, 1 file readable

[39868] doi:10.1038/s41593-022-01207-1 [paper, data]

An RNA-targeting CRISPR-Cas13d system alleviates disease-related phenotypes in Huntington's disease models.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[39869] doi:10.1038/s41593-022-01214-2 [paper, repository]

Intracellular chloride regulation mediates local sleep pressure in the cortex.

Journal: Nature neuroscience

Authors' code: paulbrodersen/somnotate (GPL-3.0), gist.github.com/b6ce791a927b7e7e714e6a322d90e2b7 (no license)

Status: code verified, 23 files readable, 5 matches

[39870] doi:10.1038/s41598-022-25733-x [paper, repository]

Assessing the drivers of gut microbiome composition in wild redfronted lemurs via longitudinal metacommunity analysis.

Journal: Scientific reports

Authors' code: tmurillocorrales/Redfrontedlemurs_gutmicrobiome (no license)

Status: code verified, 16 files readable, 11 matches

[39871] doi:10.1038/s41598-022-25863-2 [paper]

Place cells dynamically refine grid cell activities to reduce error accumulation during path integration in a continuous attractor model.

Journal: Scientific reports

Status: code on request

[39872] doi:10.1038/s42003-022-04294-9 [paper, data]

One-year-later spontaneous EEG features predict visual exploratory human phenotypes.

Journal: Communications biology

Status: data only, 1 dataset cited

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.