Every paper, by date: page 179

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 179 of 200: 12 December 2022 to 1 December 2022.

Monday, 12 December 2022 (23 papers, 13 on this page)

[39873] doi:10.1038/s42003-022-04318-4 [paper, repository]

Congruence-based contextual plausibility modulates cortical activity during vibrotactile perception in virtual multisensory environments.

Journal: Communications biology

Authors' code: OSF wpn6e (no license)

Status: code verified, 6 files readable, 3 matches

[39874] doi:10.1073/pnas.2209307119 [paper, data]

Information flow across the cortical timescale hierarchy during narrative construction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[39875] doi:10.1073/pnas.2212879119 [paper, repository]

Temporal changes in plasma membrane lipid content induce endocytosis to regulate developmental epithelial-to-mesenchymal transition.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: PiacentinoLab/2022_PNAS_nSMase2_Endocytosis (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[39876] doi:10.1111/jnc.15719 [paper]

Pathway-based integration of multi-omics data reveals lipidomics alterations validated in an Alzheimer's disease mouse model and risk loci carriers.

Journal: Journal of neurochemistry

Status: data only

[39877] doi:10.1186/s12885-022-10359-z [paper, repository]

Detection and genomic analysis of BRAF fusions in Juvenile Pilocytic Astrocytoma through the combination and integration of multi-omic data.

Journal: BMC cancer

Authors' code: mzwaig/JPA_Paper (no license)

Status: code verified, 2 files readable, 2 matches

[39878] doi:10.1186/s12974-022-02652-2 [paper, data]

Structural and functional distinctions of co-resident microglia and monocyte-derived macrophages after retinal degeneration.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[39879] doi:10.1186/s13073-022-01140-9 [paper, data]

Mendelian randomization and genetic colocalization infer the effects of the multi-tissue proteome on 211 complex disease-related phenotypes.

Journal: Genome medicine

Status: data only, 3 datasets cited

[39880] doi:10.1210/jendso/bvac188 [paper, data]

Do Corticosteroid Receptor mRNA Levels Predict the Expression of Their Target Genes?

Journal: Journal of the Endocrine Society

Status: data only, 2 datasets cited

[39881] doi:10.1371/journal.pone.0277772 [paper, data]

Differential thalamocortical interactions in slow and fast spindle generation: A computational model.

Journal: PloS one

Status: data only, 1 dataset cited

[39882] doi:10.1371/journal.pone.0278987 [paper, data]

Visualization of human optic nerve by diffusion tensor mapping and degree of neuropathy.

Journal: PloS one

Status: data only, 1 dataset cited

[39883] doi:10.14348/molcells.2022.0045 [paper, data]

Increased Caveolin-2 Expression in Brain Endothelial Cells Promotes Age-Related Neuroinflammation.

Journal: Molecules and cells

Status: data only, 1 dataset cited

[39884] doi:10.3389/fcimb.2022.1040749 [paper, data]

Brain-gut-liver axis: Chronic psychological stress promotes liver injury and fibrosis <i>via</i> gut in rats.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[39885] doi:10.3389/fncom.2022.1039822 [paper, repository]

Adapting hippocampus multi-scale place field distributions in cluttered environments optimizes spatial navigation and learning.

Journal: Frontiers in computational neuroscience

Authors' code: biorobaw/Multiscale-V2 (no license)

Status: code verified, 113 files readable, 1 match

Sunday, 11 December 2022 (1 paper)

[39886] doi:10.3390/ijms232415712 [paper, data]

Menadione Potentiates Auranofin-Induced Glioblastoma Cell Death.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 10 December 2022 (7 papers)

[39887] doi:10.1016/j.isci.2022.105788 [paper, repository]

Marmoset core visual object recognition behavior is comparable to that of macaques and humans.

Journal: iScience

Authors' code: issalab/kell-et-al-marmoset-benchmarking (no license), issalab/mkturk (no license)

Status: code verified, 32 files readable, 1 match

[39888] doi:10.1016/j.neuroimage.2022.119807 [paper, repository]

BrainStat: A toolbox for brain-wide statistics and multimodal feature associations.

Journal: NeuroImage

Authors' code: brainstat.readthedocs.io (no license), netneurolab/neuromaps (CC-BY-NC-SA-4.0)

Status: code verified, 50 files readable, 1 match

[39889] doi:10.1016/j.neuroimage.2022.119808 [paper, repository]

The confound of head position in within-session connectome fingerprinting in infants.

Journal: NeuroImage

Authors' code: Grahamgithubking/head_position (MIT)

Status: code verified, 68 files readable, 7 matches

[39890] doi:10.1038/s41467-022-35157-w [paper, repository]

Causal inference in medical records and complementary systems pharmacology for metformin drug repurposing towards dementia.

Journal: Nature communications

Authors' code: cran.r-project.org/src/contrib (no license)

Status: code verified

[39891] doi:10.1038/s41467-022-35288-0 [paper, repository]

Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding.

Journal: Nature communications

Authors' code: BGIResearch/handleBam (no license), tractatus/wholebrain (GPL-3.0), TencentAILabHealthcare/spatialID (no license), Zenodo 7315186 (other-open)

Status: code verified, 383 files readable, 8 matches

[39892] doi:10.1038/s41467-022-35410-2 [paper, data]

Activating alternative transport modes in a multidrug resistance efflux pump to confer chemical susceptibility.

Journal: Nature communications

Status: data only, 1 dataset cited

[39893] doi:10.1093/pnasnexus/pgac286 [paper, repository]

Information maximization explains state-dependent synaptic plasticity and memory reorganization during non-rapid eye movement sleep.

Journal: PNAS nexus

Authors' code: kkyoshida/SleepInfomax (MIT)

Status: code verified, 33 files readable, 10 matches

Friday, 9 December 2022 (34 papers)

[39894] doi:10.1007/s12035-022-03150-5 [paper, data]

CRISPR/Cas9 Mediated Therapeutic Approach in Huntington's Disease.

Journal: Molecular neurobiology

Status: data only, 6 datasets cited

[39895] doi:10.1016/j.isci.2022.105778 [paper]

Rapid development of motion-streak coding in the mouse visual cortex.

Journal: iScience

Status: code on request

[39896] doi:10.1016/j.isci.2022.105782 [paper]

Cocaine-regulated trafficking of dopamine transporters in cultured neurons revealed by a pH sensitive reporter.

Journal: iScience

Status: code on request

[39897] doi:10.1016/j.isci.2022.105785 [paper, repository]

Osteopontin associates with brain T_RM-cell transcriptome and compartmentalization in donors with and without multiple sclerosis.

Journal: iScience

Authors' code: kevinblighe/PCAtools (no license)

Status: code verified, 23 files readable, 1 match

[39898] doi:10.1016/j.isci.2022.105786 [paper, repository]

Promoting charging safety of electric bicycles via machine learning.

Journal: iScience

Authors' code: KUST-traffic/Chunyan-Shuai (MIT), Zenodo 7370196 (other-open)

Status: code verified, 15 files readable

[39899] doi:10.1016/j.neuroimage.2022.119792 [paper, repository]

Tensor image registration library: Deformable registration of stand-alone histology images to whole-brain post-mortem MRI data.

Journal: NeuroImage

Authors' code: git.fmrib.ox.ac.uk/ihuszar/tirlscripts (no license)

Status: code found, still to be checked

[39900] doi:10.1016/j.neuroimage.2022.119804 [paper, repository]

Stress disrupts insight-driven mnemonic reconfiguration in the medial temporal lobe.

Journal: NeuroImage

Authors' code: an-ma-grob/EpInt_Stress (no license)

Status: code verified, 19 files readable, 5 matches

[39901] doi:10.1016/j.patter.2022.100656 [paper, repository]

GeoSPM: Geostatistical parametric mapping for medicine.

Journal: Patterns (New York, N.Y.)

Authors' code: high-dimensional/geospm (GPL-3.0), Zenodo 7258971 (other-open)

Status: code verified, 1,203 files readable, 3 matches

[39902] doi:10.1038/s41380-022-01897-w [paper, repository]

Brain ageing in schizophrenia: evidence from 26 international cohorts via the ENIGMA Schizophrenia consortium.

Journal: Molecular psychiatry

Authors' code: ConstantinosConst/ENIGMA-SZ-BrainAge (no license)

Status: code verified, 10 files readable, 4 matches

[39903] doi:10.1038/s41417-022-00569-9 [paper, data]

Glioblastoma glycolytic signature predicts unfavorable prognosis, immunological heterogeneity, and ENO1 promotes microglia M2 polarization and cancer cell malignancy.

Journal: Cancer gene therapy

Status: data only, 1 dataset cited

[39904] doi:10.1038/s41467-022-34857-7 [paper, repository]

Interpretable and tractable models of transcriptional noise for the rational design of single-molecule quantification experiments.

Journal: Nature communications

Authors' code: pachterlab/GVFP_2021 (no license)

Status: code verified, 26 files readable, 9 matches

[39905] doi:10.1038/s41467-022-35025-7 [paper, repository]

Selective posttranslational inhibition of Ca_Vβ₁-associated voltage-dependent calcium channels with a functionalized nanobody.

Journal: Nature communications

Authors' code: manubenjohny/FACS_FRET (no license), manubenjohny/SinglesAnalysis (no license)

Status: code verified, 8 files readable, 1 match

[39906] doi:10.1038/s41467-022-35374-3 [paper, repository]

High-throughput robust single-cell DNA methylation profiling with sciMETv2.

Journal: Nature communications

Authors' code: adeylab/sciMETv2 (CC-BY-4.0), adeylab/unidex (no license), adeylab/scitools (no license)

Status: code verified, 58 files readable, 2 matches

[39907] doi:10.1038/s41597-022-01853-x [paper, repository]

Bulk RNA sequencing analysis of developing human induced pluripotent cell-derived retinal organoids.

Journal: Scientific data

Authors' code: WahlinLab/Organoid_RNAseq_SciData22 (GPL-3.0)

Status: code verified, 2 files readable

[39908] doi:10.1038/s41598-022-23329-z [paper, data]

Mblk-1/E93, an ecdysone related-transcription factor, targets synaptic plasticity-related genes in the honey bee mushroom bodies.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39909] doi:10.1038/s41598-022-24881-4 [paper, data]

Identification and characterization of proteins that form the inner core Ixodes scapularis tick attachment cement layer.

Journal: Scientific reports

Status: data only, 2 datasets cited

[39910] doi:10.1038/s41598-022-25855-2 [paper, data]

Canonical NF-κB signaling pathway and GRO-α/CXCR2 axis are activated in unruptured intracranial aneurysm patients.

Journal: Scientific reports

Status: data only, 1 dataset cited

[39911] doi:10.1038/s41598-022-25990-w [paper, repository]

Tract-based white matter hyperintensity patterns in patients with systemic lupus erythematosus using an unsupervised machine learning approach.

Journal: Scientific reports

Authors' code: TheoRum/manuscript_WMH_SLE (BSD-2-Clause)

Status: code verified, 6 files readable, 8 matches

[39912] doi:10.1111/ejn.15873 [paper, data]

Effect of fasting on short-term visual plasticity in adult humans.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[39913] doi:10.1117/1.nph.10.1.013507 [paper, repository]

Introduction to the shared near infrared spectroscopy format.

Journal: Neurophotonics

Authors' code: fNIRS/snirf (other), Zenodo 6784209 (other-open), Zenodo 6575155 (other-open), bunpc/pysnirf2 (GPL-3.0)

Status: code verified, 23 files readable, 2 matches

[39914] doi:10.1126/sciadv.abq3970 [paper, data]

Glia of <i>C. elegans</i> coordinate a protective organismal heat shock response independent of the neuronal thermosensory circuit.

Journal: Science advances

Status: data only, 1 dataset cited

[39915] doi:10.1126/sciadv.add7729 [paper, repository]

WiChR, a highly potassium-selective channelrhodopsin for low-light one- and two-photon inhibition of excitable cells.

Journal: Science advances

Authors' code: Zenodo 5749640 (CC-BY-4.0)

Status: code verified

[39916] doi:10.1186/s12883-022-02958-x [paper, repository]

PerBrain: a multimodal approach to personalized tracking of evolving state-of-consciousness in brain-injured patients: protocol of an international, multicentric, observational study.

Journal: BMC neurology

Authors' code: nice-tools/nice (AGPL-3.0)

Status: code verified, 57 files readable, 1 match

[39917] doi:10.1186/s12984-022-01101-8 [paper, data]

Naturalistic visualization of reaching movements using head-mounted displays improves movement quality compared to conventional computer screens and proves high usability.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[39918] doi:10.1186/s13195-022-01127-z [paper, repository]

The hibernation-derived compound SUL-138 shifts the mitochondrial proteome towards fatty acid metabolism and prevents cognitive decline and amyloid plaque formation in an Alzheimer's disease mouse model.

Journal: Alzheimer's research & therapy

Authors' code: ftwkoopmans/msdap (GPL-3.0)

Status: code verified, 78 files readable, 4 matches

[39919] doi:10.3389/fnagi.2022.1026260 [paper, data]

High resolution 16S rRNA gene Next Generation Sequencing study of brain areas associated with Alzheimer's and Parkinson's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[39920] doi:10.3389/fncel.2022.1070305 [paper, data]

Identification of Kv4.2 protein complex and modifications by tandem affinity purification-mass spectrometry in primary neurons.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[39921] doi:10.3389/fnhum.2022.1023246 [paper, data]

Home-based portable fNIRS-derived cortical laterality correlates with impairment and function in chronic stroke.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[39922] doi:10.3389/fonc.2022.1008442 [paper, repository]

Tractography-based navigated TMS language mapping protocol.

Journal: Frontiers in oncology

Authors' code: Zenodo 7387973 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[39923] doi:10.3389/fpsyg.2022.1039172 [paper, repository]

A practical introduction to using the drift diffusion model of decision-making in cognitive psychology, neuroscience, and health sciences.

Journal: Frontiers in psychology

Authors' code: OSF cpfzj (no license)

Status: code verified, 2 files readable, 12 matches

[39924] doi:10.3390/brainsci12121689 [paper]

Win and Loss Responses in the Monetary Incentive Delay Task Mediate the Link between Depression and Problem Drinking.

Journal: Brain sciences

Status: code on request

[39925] doi:10.3390/brainsci12121690 [paper, data]

Sleep Deprivation-Induced Changes in Baseline Brain Activity and Vigilant Attention Performance.

Journal: Brain sciences

Status: data only, 1 dataset cited

[39926] doi:10.3390/e24121798 [paper, data]

Attention-Based Sequence-to-Sequence Model for Time Series Imputation.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

[39927] doi:10.3390/ijms232415643 [paper, data]

The Chromatin Structure at the <i>MECP2</i> Gene and In Silico Prediction of Potential Coding and Non-Coding <i>MECP2</i> Splice Variants.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Thursday, 8 December 2022 (37 papers)

[39928] doi:10.1002/hbm.26173 [paper, repository]

Coordinated anatomical and functional variability in the human brain during adolescence.

Journal: Human brain mapping

Authors' code: neurogazer-usa/PAFA (no license)

Status: code verified, 2 files readable

[39929] doi:10.1002/hbm.26177 [paper, data]

Trends in the sample size, statistics, and contributions to the BrainMap database of activation likelihood estimation meta-analyses: An empirical study of 10-year data.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[39930] doi:10.1002/mrm.29550 [paper, repository]

Investigating the effect of oblique image acquisition on the accuracy of QSM and a robust tilt correction method.

Journal: Magnetic resonance in medicine

Authors' code: o-snow/QSM_TiltCorrection (no license)

Status: code verified, 3 files readable, 2 matches

[39931] doi:10.1016/j.isci.2022.105766 [paper]

Isoform requirement of clustered protocadherin for preventing neuronal apoptosis and neonatal lethality.

Journal: iScience

Status: code on request

[39932] doi:10.1016/j.isci.2022.105777 [paper]

Chemosensory detection of aversive concentrations of ammonia and basic volatile amines in insects.

Journal: iScience

Status: code on request

[39933] doi:10.1016/j.nicl.2022.103280 [paper]

Theory for a non-invasive diagnostic biomarker for craniospinal diseases.

Journal: NeuroImage. Clinical

Status: code on request

[39934] doi:10.1016/j.nicl.2022.103286 [paper, repository]

Aberrant claustrum structure in preterm-born neonates: an MRI study.

Journal: NeuroImage. Clinical

Authors' code: hongweilibran/claustrum_multi_view (no license), cor2ni/3D_brain_plot (MIT)

Status: code verified, 11 files readable

[39935] doi:10.1038/s41398-022-02265-6 [paper, data]

Early-life stress lastingly impacts microglial transcriptome and function under basal and immune-challenged conditions.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[39936] doi:10.1038/s41467-022-35341-y [paper, data]

Neural precursor cells tune striatal connectivity through the release of IGFBPL1.

Journal: Nature communications

Status: data only, 1 dataset cited

[39937] doi:10.1038/s41539-022-00147-6 [paper]

Enhancing learning and retention with distinctive virtual reality environments and mental context reinstatement.

Journal: NPJ science of learning

Status: code on request

[39938] doi:10.1038/s41594-022-00882-9 [paper, repository]

A critical period of translational control during brain development at codon resolution.

Journal: Nature structural & molecular biology

Authors' code: ohlerlab/cortexomics (no license)

Status: code verified, 45 files readable, 5 matches

[39939] doi:10.1038/s42003-022-04231-w [paper, repository]

Tracking momentary fluctuations in human attention with a cognitive brain-machine interface.

Journal: Communications biology

Authors' code: figshare 13720546 (CC-BY-4.0)

Status: code verified

[39940] doi:10.1111/desc.13352 [paper, repository]

Lexical and sublexical cortical tuning for print revealed by Steady-State Visual Evoked Potentials (SSVEPs) in early readers.

Journal: Developmental science

Authors' code: svndl/rcaExtra (MIT)

Status: code verified, 174 files readable, 4 matches

[39941] doi:10.1155/2022/2183562 [paper, data]

An Explainable Statistical Method for Seizure Prediction Using Brain Functional Connectivity from EEG.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[39942] doi:10.1186/s12884-022-05235-4 [paper, data]

Distribution of endotoxin in maternal and fetal body with intrahepatic cholestasis of pregnancy and its association with adverse fetal outcome.

Journal: BMC pregnancy and childbirth

Status: data only, 1 dataset cited

[39943] doi:10.1186/s12916-022-02678-6 [paper, repository]

Links between electroconvulsive therapy responsive and cognitive impairment multimodal brain networks in late-life major depressive disorder.

Journal: BMC medicine

Authors' code: trendscenter.org/software/fit (no license)

Status: code verified

[39944] doi:10.1186/s12916-022-02679-5 [paper, repository]

Identifying novel proteins underlying schizophrenia via integrating pQTLs of the plasma, CSF, and brain with GWAS summary data.

Journal: BMC medicine

Authors' code: MRCIEU/TwoSampleMR (other)

Status: code verified, 73 files readable, 2 matches

[39945] doi:10.1186/s12935-022-02819-0 [paper, repository]

Glioblastoma cells have increased capacity to repair radiation-induced DNA damage after migration to the olfactory bulb.

Journal: Cancer cell international

Authors' code: CCBR/Pipeliner (no license)

Status: code verified, 148 files readable, 2 matches

[39946] doi:10.1186/s12974-022-02641-5 [paper, repository]

MyD88-TLR4-dependent choroid plexus activation precedes perilesional inflammation and secondary brain edema in a mouse model of intracerebral hemorrhage.

Journal: Journal of neuroinflammation

Authors' code: Zenodo 5760872 (CC-BY-4.0)

Status: code verified, 4 files readable, 3 matches

[39947] doi:10.1186/s12974-022-02654-0 [paper, data]

Temporal proteomics of human cerebrospinal fluid after severe traumatic brain injury.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[39948] doi:10.1186/s13229-022-00526-1 [paper, repository]

Infant excitation/inhibition balance interacts with executive attention to predict autistic traits in childhood.

Journal: Molecular autism

Authors' code: OSF 2vwxy (no license)

Status: code verified, 1 file readable, 1 match

[39949] doi:10.1186/s40708-022-00178-0 [paper, repository]

Inferring the temporal evolution of synaptic weights from dynamic functional connectivity.

Journal: Brain informatics

Authors' code: mcelotto/estimate_synWeigths_from_DFC (MIT), code.google.com/archive/p (no license)

Status: code verified, 28 files readable, 8 matches

[39950] doi:10.1242/dev.200504 [paper, repository]

Single-cell transcriptional and functional analysis of dopaminergic neurons in organoid-like cultures derived from human fetal midbrain.

Journal: Development (Cambridge, England)

Authors' code: smorabit/hdWGCNA (other)

Status: code verified, 77 files readable, 3 matches

[39951] doi:10.1371/journal.pone.0268233 [paper, repository]

Automation and standardization of subject-specific region-of-interest segmentation for investigation of diffusion imaging in clinical populations.

Journal: PloS one

Authors' code: OSF x7wup (no license), aazor (no license)

Status: code verified

[39952] doi:10.1371/journal.pone.0278776 [paper, repository]

Closing the life-cycle of normative modeling using federated hierarchical Bayesian regression.

Journal: PloS one

Authors' code: amarquand/PCNtoolkit (GPL-3.0), Warvito/neurocombat_sklearn (MIT)

Status: code verified, 139 files readable, 4 matches

[39953] doi:10.3389/fncel.2022.1057857 [paper]

Altered expression of glycan patterns and glycan-related genes in the medial prefrontal cortex of the valproic acid rat model of autism.

Journal: Frontiers in cellular neuroscience

Status: data only

[39954] doi:10.3389/fneur.2022.1026695 [paper]

Genetic etiological analysis of auditory neuropathy spectrum disorder by next-generation sequencing.

Journal: Frontiers in neurology

Status: data only

[39955] doi:10.3389/fnins.2022.976594 [paper, repository]

Human gait-labeling uncertainty and a hybrid model for gait segmentation.

Journal: Frontiers in neuroscience

Authors' code: Biomechanical-ToolKit/Mokka (BSD-3-Clause)

Status: code verified, 68 files readable

[39956] doi:10.3389/fnmol.2022.1034766 [paper, data]

Nucleosome assembly protein 1-like 5 alleviates Alzheimer's disease-like pathological characteristics in a cell model.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[39957] doi:10.3390/bioengineering9120783 [paper, data]

A Deep Learning Approach for Detecting Stroke from Brain CT Images Using OzNet.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[39958] doi:10.3390/biomimetics7040231 [paper, repository]

EEG-Based Mapping of Resting-State Functional Brain Networks in Patients with Parkinson's Disease.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: yaelezra/tPDC (no license)

Status: code verified, 5 files readable, 1 match

[39959] doi:10.3390/jintelligence10040121 [paper, repository]

Alpha Suppression Is Associated with the Tip-of-the-Tongue (TOT) State Whereas Alpha Expression Is Associated with Knowing That One Does Not Know.

Journal: Journal of Intelligence

Authors' code: OSF nkh9u (no license)

Status: code verified, 1 file readable, 1 match

[39960] doi:10.3390/toxics10120764 [paper, data]

Towards Whole Health Toxicology: In-Silico Prediction of Diseases Sensitive to Multi-Chemical Exposures.

Journal: Toxics

Status: data only, 1 dataset cited

[39961] doi:10.5334/jcr.218 [paper, repository]

Discovery and Visualization of Age-Dependent Patterns in the Diurnal Transcriptome of Drosophila.

Journal: Journal of circadian rhythms

Authors' code: rfey/RP24 (GPL-3.0)

Status: code verified, 115 files readable, 11 matches

[39962] doi:10.7554/elife.60190 [paper, repository]

Emotional learning retroactively promotes memory integration through rapid neural reactivation and reorganization.

Journal: eLife

Authors' code: QinBrainLab/2017_EmotionLearning (no license)

Status: code verified, 32 files readable, 6 matches

[39963] doi:10.7554/elife.79545 [paper, repository]

Rhythmic coordination and ensemble dynamics in the hippocampal-prefrontal network during odor-place associative memory and decision making.

Journal: eLife

Authors' code: flatironinstitute/mountainsort (no license), jadhavlab/jadhav-lab-codes-jhb (Apache-2.0)

Status: code verified, 1,170 files readable, 29 matches

[39964] doi:10.7554/elife.84042 [paper, repository]

Scratch-AID, a deep learning-based system for automatic detection of mouse scratching behavior with high accuracy.

Journal: eLife

Authors' code: taimeimiaole/Scratch-AID (no license)

Status: code verified, 10 files readable, 3 matches

Wednesday, 7 December 2022 (27 papers)

[39965] doi:10.1002/hbm.26143 [paper, data]

Linear multi-scale modeling of diffusion MRI data: A framework for characterization of oriented structures across length scales.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[39966] doi:10.1016/j.chembiol.2022.11.007 [paper]

A photocaged orexin-B for spatiotemporally precise control of orexin signaling.

Journal: Cell chemical biology

Status: code on request

[39967] doi:10.1016/j.isci.2022.105752 [paper]

Cortical feedback modulates distinct critical period development in mouse visual thalamus.

Journal: iScience

Status: code on request

[39968] doi:10.1016/j.isci.2022.105756 [paper]

Inferring direction of associations between histone modifications using a neural processes-based framework.

Journal: iScience

Status: code on request

[39969] doi:10.1016/j.isci.2022.105758 [paper, repository]

<i>In situ</i> health monitoring of multiscale structures and its instantaneous verification using mechanoluminescence and dual machine learning.

Journal: iScience

Authors' code: MechanoluminescenceAI/SHM (no license), phillipi/pix2pix20 (no license)

Status: code verified, 4 files readable, 3 matches

[39970] doi:10.1016/j.nicl.2022.103285 [paper, repository]

Event-based modeling of T1-weighted MRI is related to pathology in frontotemporal lobar degeneration due to tau and TDP.

Journal: NeuroImage. Clinical

Authors' code: ucl-pond/ebm (MIT)

Status: code verified, 27 files readable, 3 matches

[39971] doi:10.1038/s41467-022-35068-w [paper, data]

The estrous cycle modulates early-life adversity effects on mouse avoidance behavior through progesterone signaling.

Journal: Nature communications

Status: data only, 1 dataset cited

[39972] doi:10.1038/s41467-022-35121-8 [paper, repository]

Dynamic control of decision and movement speed in the human basal ganglia.

Journal: Nature communications

Authors' code: data.mrc.ox.ac.uk (no license), data.mrc.ox.ac.uk/data-set/subthalamic-nucleus-correlates-decision-and-movement-speed (no license)

Status: code verified

[39973] doi:10.1038/s41467-022-35299-x [paper, data]

GABAergic neurons in the rostromedial tegmental nucleus are essential for rapid eye movement sleep suppression.

Journal: Nature communications

Status: code on request, 1 dataset cited

[39974] doi:10.1038/s41598-022-25131-3 [paper, repository]

The effects of microglia on tauopathy progression can be quantified using Nexopathy in silico (Nexis) models.

Journal: Scientific reports

Authors' code: Raj-Lab-UCSF/Nexis (MIT)

Status: code verified, 62 files readable, 2 matches

[39975] doi:10.1038/s42003-022-04281-0 [paper, repository]

The subcortical and neurochemical organization of the ventral and dorsal attention networks.

Journal: Communications biology

Authors' code: chrisfoulon/BCBToolKit (BSD-3-Clause), Pedro-N-Alves/VAN_DAN_functional_alignment (no license), networkx/networkx (BSD-3-Clause), netneurolab/neuromaps (CC-BY-NC-SA-4.0), Zenodo 7307027 (other-open)

Status: code verified, 803 files readable, 6 matches

[39976] doi:10.1098/rsos.220994 [paper, data]

Investigation of the photoluminescent properties, scintillation behaviour and toxicological profile of various magnesium tungstate nanoscale motifs.

Journal: Royal Society open science

Status: data only, 1 dataset cited

[39977] doi:10.1098/rspb.2022.1941 [paper, repository]

Cannabinoid receptor 2 evolutionary gene loss makes parrots more susceptible to neuroinflammation.

Journal: Proceedings. Biological sciences

Authors' code: hanielcedraz/BAQCOM (no license), alexdobin/STAR (MIT), doi:10.6084/m9.figshare.c.6307543 (no license)

Status: code verified, 342 files readable

[39978] doi:10.1111/cns.14050 [paper, repository]

Multiple sclerosis as a model to investigate SARS-CoV-2 effect on brain atrophy.

Journal: CNS neuroscience & therapeutics

Authors' code: SCAN-NRAD/BrainAtrophyRate (no license), SCAN-NRAD/DL-DiReCT (BSD-3-Clause)

Status: code verified, 17 files readable, 2 matches

[39979] doi:10.1186/s12886-022-02715-1 [paper, data]

Perfluorocarbon liquid-assisted vitreo-dissection in eyes with firmly adherent posterior hyaloid.

Journal: BMC ophthalmology

Status: data only, 1 dataset cited

[39980] doi:10.1186/s12911-022-02055-6 [paper, repository]

Neural-signature methods for structured EHR prediction.

Journal: BMC medical informatics and decision making

Authors' code: andre-vauvelle/doctor-signature (BSD-3-Clause)

Status: code verified, 35 files readable, 1 match

[39981] doi:10.1186/s13054-022-04259-8 [paper, data]

The central role of the gut in intensive care.

Journal: Critical care (London, England)

Status: data only, 1 dataset cited

[39982] doi:10.1186/s40478-022-01486-6 [paper, data]

Spinocerebellar ataxia type 17-digenic TBP/STUB1 disease: neuropathologic features of an autopsied patient.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[39983] doi:10.1371/journal.pcbi.1010763 [paper, repository]

Population coding strategies in human tactile afferents.

Journal: PLoS computational biology

Authors' code: macasal/afferentPopulationTouch (no license)

Status: code verified, 2 files readable

[39984] doi:10.1371/journal.pone.0278402 [paper, repository]

Collaborating neuroscience online: The case of the Human Brain Project forum.

Journal: PloS one

Authors' code: max-planck-innovation-competition/HBP_Forum (no license)

Status: code verified, 6 files readable, 1 match

[39985] doi:10.2147/dddt.s383054 [paper, data]

Methanolic Extract of <i>Aerva javanica</i> Leaves Prevents LPS-Induced Depressive Like Behavior in Experimental Mice.

Journal: Drug design, development and therapy

Status: data only, 1 dataset cited

[39986] doi:10.3389/fcell.2022.1078927 [paper, data]

A region-dependent allele-biased expression of Dopa decarboxylase in mouse brain.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[39987] doi:10.3389/fimmu.2022.1095427 [paper, data]

HIF-1α/BNIP3L induced cognitive deficits in a mouse model of sepsis-associated encephalopathy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[39988] doi:10.3389/fnins.2022.1000863 [paper, data]

Test-retest reliability of modular-relevant analysis in brain functional network.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[39989] doi:10.3389/fnmol.2022.1039990 [paper, data]

Identification of a <i>de novo</i> mutation of the <i>FOXG1</i> gene and comprehensive analysis for molecular factors in Chinese FOXG1-related encephalopathies.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[39990] doi:10.3389/fpsyt.2022.1061359 [paper, data]

Alteration of whole-brain amplitude of low-frequency fluctuation and degree centrality in patients with mild to moderate depression: A resting-state functional magnetic resonance imaging study.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[39991] doi:10.7554/elife.82218 [paper, data]

Doublecortin and JIP3 are neural-specific counteracting regulators of dynein-mediated retrograde trafficking.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 6 December 2022 (16 papers)

[39992] doi:10.1016/j.ebiom.2022.104395 [paper, repository]

Inherited rare variants in homologous recombination and neurodevelopmental genes are associated with increased risk of neuroblastoma.

Journal: EBioMedicine

Authors' code: nandobonf/ngspipe (no license)

Status: code verified, 6 files readable, 2 matches

[39993] doi:10.1016/j.isci.2022.105751 [paper]

Body and visual instabilities functionally modulate implicit reaching corrections.

Journal: iScience

Status: code on request

[39994] doi:10.1016/j.nicl.2022.103283 [paper, repository]

Exploring the heterogeneous morphometric data in essential tremor with probabilistic modelling.

Journal: NeuroImage. Clinical

Authors' code: TiBiUan/SCA_IndividualDifferences (no license)

Status: code verified, 62 files readable, 9 matches

[39995] doi:10.1038/s41467-022-35118-3 [paper, repository]

Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma.

Journal: Nature communications

Authors' code: YeoLab/eclipdemux (no license), YeoLab/eclip (other), YeoLab/clip_analysis_legacy (no license)

Status: code verified, 53 files readable, 3 matches

[39996] doi:10.1371/journal.pone.0278343 [paper, data]

cGMP dynamics that underlies thermosensation in temperature-sensing neuron regulates thermotaxis behavior in C. elegans.

Journal: PloS one

Status: data only, 1 dataset cited

[39997] doi:10.15252/embr.202153801 [paper, data]

Piwil2 (Mili) sustains neurogenesis and prevents cellular senescence in the postnatal hippocampus.

Journal: EMBO reports

Status: data only, 1 dataset cited

[39998] doi:10.3389/fendo.2022.1019943 [paper, data]

Galanin family peptides: Molecular structure, expression and roles in the neuroendocrine axis and in the spinal cord.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[39999] doi:10.3389/fneur.2022.1084874 [paper, data]

Hippocampal gene expression patterns in Sevoflurane anesthesia associated neurocognitive disorders: A bioinformatic analysis.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[40000] doi:10.3389/fnhum.2022.1043569 [paper, repository]

Convolutional autoencoder joint boundary and mask adversarial learning for fundus image segmentation.

Journal: Frontiers in human neuroscience

Authors' code: CQRhinoZ/CAE-BMAL (no license)

Status: code verified, 29 files readable, 4 matches

[40001] doi:10.3389/fnhum.2022.1051463 [paper, repository]

Decoding the neural signatures of valence and arousal from portable EEG headset.

Journal: Frontiers in human neuroscience

Authors' code: rohitgarg025/Decoding_EEG (no license)

Status: code verified, 22 files readable, 14 matches

[40002] doi:10.3389/fpsyg.2022.1051405 [paper, data]

The effects of materialism and ego depletion on intertemporal choice: An event-related potential study.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[40003] doi:10.3389/fpsyt.2022.999384 [paper, repository]

Segmental abnormalities of superior longitudinal fasciculus microstructure in patients with schizophrenia, bipolar disorder, and attention-deficit/hyperactivity disorder: An automated fiber quantification tractography study.

Journal: Frontiers in psychiatry

Authors' code: yeatmanlab/afq (gnu)

Status: code verified, 180 files readable, 2 matches

[40004] doi:10.3390/ani12233432 [paper, data]

Extensive Adaptive Variation in Gene Expression within and between Closely Related Horseshoe Bats (Chiroptera, <i>Rhinolophus</i>) Revealed by Three Organs.

Journal: Animals : an open access journal from MDPI

Status: data only, 1 dataset cited

[40005] doi:10.3390/ijms232315383 [paper, data]

Tau Isoforms: Gaining Insight into <i>MAPT</i> Alternative Splicing.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40006] doi:10.3390/life12122036 [paper, data]

A Robust Computer-Aided Automated Brain Tumor Diagnosis Approach Using PSO-ReliefF Optimized Gaussian and Non-Linear Feature Space.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[40007] doi:10.47626/2237-6089-2021-0254 [paper, data]

Increase in serum brain-derived neurotrophic factor levels during early withdrawal in severe alcohol users.

Journal: Trends in psychiatry and psychotherapy

Status: data only, 1 dataset cited

Monday, 5 December 2022 (37 papers)

[40008] doi:10.1002/hbm.26165 [paper, repository]

Fast three-dimensional image generation for healthy brain aging using diffeomorphic registration.

Journal: Human brain mapping

Authors' code: fjr9516/synthetic-brain-aging (MIT)

Status: code verified, 31 files readable, 6 matches

[40009] doi:10.1007/s10162-022-00877-9 [paper]

Informational Masking in Aging and Brain-lesioned Individuals.

Journal: Journal of the Association for Research in Otolaryngology : JARO

Status: code on request

[40010] doi:10.1016/j.isci.2022.105718 [paper]

Tickle contagion in the rat somatosensory cortex.

Journal: iScience

Status: code on request

[40011] doi:10.1016/j.isci.2022.105724 [paper]

Aberrant cortical projections to amygdala GABAergic neurons contribute to developmental circuit dysfunction following early life stress.

Journal: iScience

Status: code on request

[40012] doi:10.1016/j.isci.2022.105728 [paper]

Impaired synaptic plasticity in an animal model of autism exhibiting early hippocampal GABAergic-BDNF/TrkB signaling alterations.

Journal: iScience

Status: code on request

[40013] doi:10.1016/j.isci.2022.105731 [paper]

Epilepsy gene <i>prickle</i> ensures neuropil glial ensheathment through regulating cell adhesion molecules.

Journal: iScience

Status: code on request

[40014] doi:10.1016/j.mcpro.2022.100478 [paper, data]

The First Pituitary Proteome Landscape From Matched Anterior and Posterior Lobes for a Better Understanding of the Pituitary Gland.

Journal: Molecular & cellular proteomics : MCP

Status: data only, 1 dataset cited

[40015] doi:10.1016/j.media.2022.102723 [paper, repository]

Equitable modelling of brain imaging by counterfactual augmentation with morphologically constrained 3D deep generative models.

Journal: Medical image analysis

Authors' code: guilherme-pombo/CounterSynth (no license)

Status: code verified, 6 files readable, 2 matches

[40016] doi:10.1016/j.neuroimage.2022.119786 [paper, data]

Association between brain similarity to severe mental illnesses and comorbid cerebral, physical, and cognitive impairments.

Journal: NeuroImage

Status: data only, 1 dataset cited

[40017] doi:10.1016/j.xcrm.2022.100846 [paper, repository]

Selective and replicable neuroimaging-based indicators of pain discriminability.

Journal: Cell reports. Medicine

Authors' code: OSF s4ugw (no license)

Status: code verified, 3 files readable, 6 matches

[40018] doi:10.1016/j.ynstr.2022.100507 [paper, data]

Sex-dependent effects of early life stress on reinforcement learning and limbic cortico-striatal functional connectivity.

Journal: Neurobiology of stress

Status: data only, 1 dataset cited

[40019] doi:10.1038/s41419-022-05481-6 [paper, data]

Migration deficits of the neural crest caused by CXADR triplication in a human Down syndrome stem cell model.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[40020] doi:10.1038/s41467-022-34732-5 [paper, repository]

Genome-wide association study of REM sleep behavior disorder identifies polygenic risk and brain expression effects.

Journal: Nature communications

Authors' code: neurogenetics/GWAS-pipeline (no license), lynnekrohn/rbd_gwas (no license), RHReynolds/RBD-GWAS-analysis (MIT), jbryois/scRNA_disease (no license), NathanSkene/EWCE (no license), RHReynolds/MarkerGenes (MIT), Zenodo 7225250 (other-open)

Status: code verified, 216 files readable, 6 matches

[40021] doi:10.1038/s41467-022-35163-y [paper, data]

Cannabinoid non-cannabidiol site modulation of TRPV2 structure and function.

Journal: Nature communications

Status: data only, 1 dataset cited

[40022] doi:10.1038/s41531-022-00435-3 [paper]

Cortical and subcortical morphological alterations in motor subtypes of Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[40023] doi:10.1038/s41588-022-01241-6 [paper, data]

Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation.

Journal: Nature genetics

Status: data only, 6 datasets cited

[40024] doi:10.1038/s41598-022-25364-2 [paper, data]

Disruption of hippocampal neuronal circuit function depends upon behavioral state in the APP/PS1 mouse model of Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40025] doi:10.1038/s41598-022-25389-7 [paper, repository]

Performance sensitivity analysis of brain metastasis stereotactic radiosurgery outcome prediction using MRI radiomics.

Journal: Scientific reports

Authors' code: baines-imaging-research-laboratory/radiomics-for-srs-performance-sensitivity-code (no license)

Status: code verified, 2,000 files readable, 8 matches

[40026] doi:10.1073/pnas.2115328119 [paper, repository]

Noninvasive detection of any-stage cancer using free glycosaminoglycans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SysBioChalmers/GAGome-MCED (MIT)

Status: code verified, 4 files readable, 1 match

[40027] doi:10.1073/pnas.2214562119 [paper, data]

An abstract categorical decision code in dorsal premotor cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40028] doi:10.1080/15548627.2022.2151294 [paper, data]

Substitution of PINK1 Gly411 modulates substrate receptivity and turnover.

Journal: Autophagy

Status: data only, 1 dataset cited

[40029] doi:10.1097/adm.0000000000001112 [paper, repository]

Integrative Analysis of Proteome-wide Association Studies and Functional Enrichment Analysis to Identify Genes and Chemicals Associated with Alcohol Dependence.

Journal: Journal of addiction medicine

Authors' code: Nealelab/picopili (no license)

Status: code verified, 59 files readable

[40030] doi:10.1111/cns.14043 [paper, data]

Effect of molecular hydrogen treatment on Sepsis-Associated encephalopathy in mice based on gut microbiota.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[40031] doi:10.1128/mbio.01794-22 [paper, repository]

Longitudinal Analysis of the Microbiome and Metabolome in the 5xfAD Mouse Model of Alzheimer's Disease.

Journal: mBio

Authors' code: sjbd1/5xfAD_mBio2022 (no license)

Status: code verified, 4 files readable, 7 matches

[40032] doi:10.1371/journal.pcbi.1010590 [paper, repository]

Input correlations impede suppression of chaos and learning in balanced firing-rate networks.

Journal: PLoS computational biology

Authors' code: RainerEngelken/NonstationaryDynamicMeanFieldTheory (GPL-3.0)

Status: code verified, 4 files readable

[40033] doi:10.1371/journal.pcbi.1010747 [paper, repository]

EEG-representational geometries and psychometric distortions in approximate numerical judgment.

Journal: PLoS computational biology

Authors' code: Zenodo 6411287 (MIT), Zenodo 6411313 (MIT), Zenodo 6363575 (MIT), sappelhoff/pyprep (MIT), sappelhoff/ecomp_analysis (MIT), sappelhoff/ecomp_experiment (MIT)

Status: code verified, 142 files readable, 12 matches

[40034] doi:10.1523/jneurosci.0148-22.2022 [paper, repository]

Neural Contributions to Reduced Fluid Intelligence across the Adult Lifespan.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF xgw56 (no license)

Status: code verified, 11 files readable, 3 matches

[40035] doi:10.3389/fcell.2022.1011974 [paper, data]

Cell type-specific changes in Wnt signaling and neuronal differentiation in the developing mouse cortex after prenatal alcohol exposure during neurogenesis.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[40036] doi:10.3389/fnagi.2022.1034998 [paper, data]

Transcutaneous electrical acupoint stimulation for reducing cognitive dysfunction in lumbar spine surgery: A randomized, controlled trail.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[40037] doi:10.3389/fnbeh.2022.1023361 [paper, repository]

Strain-dependent regulation of hippocampal long-term potentiation by dopamine D1/D5 receptors in mice.

Journal: Frontiers in behavioral neuroscience

Authors' code: JetiLab/blotit (MIT)

Status: code verified, 13 files readable, 1 match

[40038] doi:10.3389/fncel.2022.1006703 [paper, repository]

Efficient processing of natural scenes in visual cortex.

Journal: Frontiers in cellular neuroscience

Authors' code: LabForComputationalVision/textureSynth (MIT), Zenodo 5561807 (no license), epiasini/metex (GPL-3.0)

Status: code verified, 23 files readable, 2 matches

[40039] doi:10.3389/fneur.2022.1014346 [paper, data]

Comparison of ischemic stroke diagnosis models based on machine learning.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[40040] doi:10.3389/fnimg.2022.983324 [paper, repository]

autohrf-an R package for generating data-informed event models for general linear modeling of task-based fMRI data.

Journal: Frontiers in neuroimaging

Authors' code: demsarjure/autohrf (no license), OSF amhb2 (no license)

Status: code verified, 23 files readable, 9 matches

[40041] doi:10.3389/fnins.2022.1025967 [paper, data]

Spatial and temporal frequency band changes during infarct induction, infarct progression, and spreading depolarizations in the gyrencephalic brain.

Journal: Frontiers in neuroscience

Status: data only, 3 datasets cited

[40042] doi:10.3390/brainsci12121672 [paper, data]

DSCNN-LSTMs: A Lightweight and Efficient Model for Epilepsy Recognition.

Journal: Brain sciences

Status: data only, 1 dataset cited

[40043] doi:10.3892/etm.2022.11745 [paper, data]

Identification of pyroptosis‑related genes in neuropathic pain based on bioinformatics analysis.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

[40044] doi:10.7554/elife.78216 [paper, repository]

Neuroendocrinology of the lung revealed by single-cell RNA sequencing.

Journal: eLife

Authors' code: sdarmanis/Neuroendocrine_scRNA-seq (no license), cskuo/NE_scRNA-seq (no license)

Status: code verified, 5 files readable, 2 matches

Sunday, 4 December 2022 (2 papers)

[40045] doi:10.1002/dad2.12377 [paper, data]

Cerebrospinal fluid levels of fatty acid-binding protein 3 are associated with likelihood of amyloidopathy in cognitively healthy individuals.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: data only, 1 dataset cited

[40046] doi:10.1002/nbm.4866 [paper, repository]

Tissue optimization strategies for high-quality ex vivo diffusion imaging.

Journal: NMR in biomedicine

Authors' code: rachellcb/SNR-Efficiency-Calculator (no license)

Status: code verified, 3 files readable

Saturday, 3 December 2022 (4 papers)

[40047] doi:10.1038/s41467-022-35211-7 [paper, repository]

A circuit from the ventral subiculum to anterior hypothalamic nucleus GABAergic neurons essential for anxiety-like behavioral avoidance.

Journal: Nature communications

Authors' code: xulab2022/AHN (no license)

Status: code verified, 6 files readable

[40048] doi:10.1038/s41598-022-25219-w [paper, repository]

Recurrent connections facilitate symmetry perception in deep networks.

Journal: Scientific reports

Authors' code: ssundaram21/symmetry (MIT)

Status: code verified, 53 files readable, 5 matches

[40049] doi:10.1038/s42003-022-04292-x [paper, repository]

Volumetric imaging of fast cellular dynamics with deep learning enhanced bioluminescence microscopy.

Journal: Communications biology

Authors' code: gitlab.icfo.net/nmsb/efmicro (no license)

Status: code verified, 12 files readable, 4 matches

[40050] doi:10.3390/jimaging8120321 [paper, repository]

A Multimodal Knowledge-Based Deep Learning Approach for MGMT Promoter Methylation Identification.

Journal: Journal of imaging

Authors' code: kaggle.com/competitions/rsna-miccai-brain-tumor-radiogenomic-classification (no license), priamus-lab/GBM-MGMT-Detection (no license)

Status: code verified, 8 files readable

Friday, 2 December 2022 (17 papers)

[40051] doi:10.1007/s10548-022-00926-9 [paper, repository]

The IAS-MEEG Package: A Flexible Inverse Source Reconstruction Platform for Reconstruction and Visualization of Brain Activity from M/EEG Data.

Journal: Brain topography

Authors' code: ias-code/ias-meeg (BSD-3-Clause), ias-code.github.io/ias-meeg (no license)

Status: code verified, 11 files readable, 11 matches

[40052] doi:10.1038/s41380-022-01861-8 [paper, repository]

Glutamatergic dysfunction leads to a hyper-dopaminergic phenotype through deficits in short-term habituation: a mechanism for aberrant salience.

Journal: Molecular psychiatry

Authors' code: OSF 9f23m (no license)

Status: code verified, 7 files readable

[40053] doi:10.1038/s41467-022-35115-6 [paper, repository]

Conserved structures of neural activity in sensorimotor cortex of freely moving rats allow cross-subject decoding.

Journal: Nature communications

Authors' code: Zenodo 7296960 (other-open), optophys/conserved_structures_cortex (GPL-3.0)

Status: code verified, 14 files readable, 3 matches

[40054] doi:10.1038/s41467-022-35160-1 [paper]

Reconfigurable neuromorphic memristor network for ultralow-power smart textile electronics.

Journal: Nature communications

Status: code on request

[40055] doi:10.1038/s41598-022-22688-x [paper, data]

Evolutionarily conserved gene expression patterns for affective disorders revealed using cross-species brain transcriptomic analyses in humans, rats and zebrafish.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40056] doi:10.1038/s42003-022-04268-x [paper, repository]

Reduced excitatory neuron activity and interneuron-type-specific deficits in a mouse model of Alzheimer's disease.

Journal: Communications biology

Authors' code: moustaam0/Algamal2022_analysis_w_OASIS (no license)

Status: code verified, 13 files readable, 1 match

[40057] doi:10.1073/pnas.2205789119 [paper, data]

Human cytomegalovirus induces neuronal enolase to support virally mediated metabolic remodeling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40058] doi:10.1073/pnas.2207181119 [paper]

Age-related brain atrophy is not a homogenous process: Different functional brain networks associate differentially with aging and blood factors.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[40059] doi:10.1073/pnas.2213120119 [paper, data]

Transgenerational transmission of aspartame-induced anxiety and changes in glutamate-GABA signaling and gene expression in the amygdala.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40060] doi:10.1093/braincomms/fcac318 [paper, repository]

Serum unsaturated phosphatidylcholines predict longitudinal basal forebrain degeneration in Alzheimer's disease.

Journal: Brain communications

Authors' code: barupal/ChemRICH (no license)

Status: code verified, 6 files readable

[40061] doi:10.1186/s40824-022-00309-y [paper, data]

Efficiently targeted therapy of glioblastoma xenograft via multifunctional biomimetic nanodrugs.

Journal: Biomaterials research

Status: data only, 1 dataset cited

[40062] doi:10.1371/journal.pcbi.1010682 [paper, repository]

Stability and learning in excitatory synapses by nonlinear inhibitory plasticity.

Journal: PLoS computational biology

Authors' code: comp-neural-circuits/Nonlinear-inhibitory-plasticity (no license)

Status: code verified, 23 files readable

[40063] doi:10.3389/fimmu.2022.1043579 [paper, data]

Hypothesis of a potential BrainBiota and its relation to CNS autoimmune inflammation.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[40064] doi:10.3389/fnmol.2022.1037912 [paper, data]

Circ-Vps41 positively modulates Syp and its overexpression improves memory ability in aging mice.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[40065] doi:10.3758/s13414-022-02617-w [paper, data]

Differential modulation of visual responses by distractor or target expectations.

Journal: Attention, perception & psychophysics

Status: data only, 1 dataset cited

[40066] doi:10.7554/elife.79994 [paper, data]

m⁶A epitranscriptomic modification regulates neural progenitor-to-glial cell transition in the retina.

Journal: eLife

Status: data only, 1 dataset cited

[40067] doi:10.7554/elife.81679 [paper, repository]

Uncertainty alters the balance between incremental learning and episodic memory.

Journal: eLife

Authors' code: codeocean:2024716 (no license), codeocean:1266819 (no license)

Status: code found, still to be checked

Thursday, 1 December 2022 (90 papers, 29 on this page)

[40068] doi:10.1002/cne.25437 [paper, repository]

The local and long-range input landscape of inhibitory neurons in mouse auditory cortex.

Journal: The Journal of comparative neurology

Authors' code: mizrahiteam/tasaka-et-al.-j.-comp.-neurol.-2022 (no license)

Status: empty repository, 1 file readable

[40069] doi:10.1002/iid3.742 [paper]

TMEM173 rs7447927 genetic polymorphism and susceptibility to severe enterovirus 71 infection in Chinese children.

Journal: Immunity, inflammation and disease

Status: code on request

[40070] doi:10.1016/j.cell.2022.11.022 [paper, repository]

A brainstem integrator for self-location memory and positional homeostasis in zebrafish.

Journal: Cell

Authors' code: nvladimus/ZebrafishFunctionalMaps_LinearRegression (MIT), mikarubi/voluseg (MIT)

Status: code verified, 57 files readable, 2 matches

[40071] doi:10.1016/j.celrep.2022.111757 [paper, repository]

Circuit-selective cell-autonomous regulation of inhibition in pyramidal neurons by Ste20-like kinase.

Journal: Cell reports

Authors' code: pedroxroyero/Patch-Seq-analysis-SLK-KD (no license)

Status: code verified, 6 files readable, 11 matches

[40072] doi:10.1016/j.celrep.2022.111772 [paper]

Essential role of the mitochondrial Na⁺/Ca²⁺ exchanger NCLX in mediating PDE2-dependent neuronal survival and learning.

Journal: Cell reports

Status: code on request

[40073] doi:10.1016/j.celrep.2022.111785 [paper, repository]

Tace/ADAM17 is a bi-directional regulator of axon guidance that coordinates distinct Frazzled and Dcc receptor signaling outputs.

Journal: Cell reports

Authors' code: pmascalchi/ImageJ_Auto-white-balance-correction (no license)

Status: empty repository, 1 file readable

[40074] doi:10.1016/j.celrep.2022.111820 [paper]

Rapid astrocyte-dependent facilitation amplifies multi-vesicular release in hippocampal synapses.

Journal: Cell reports

Status: code on request

[40075] doi:10.1016/j.celrep.2022.111848 [paper, repository]

IL-17/CXCL5 signaling within the oligovascular niche mediates human and mouse white matter injury.

Journal: Cell reports

Authors' code: OSF 2ymb4 (no license)

Status: code verified

[40076] doi:10.1016/j.celrep.2022.111849 [paper, data]

Cortico-cortical drive in a coupled premotor-primary motor cortex dynamical system.

Journal: Cell reports

Status: code on request, 2 datasets cited

[40077] doi:10.1016/j.celrep.2022.111872 [paper]

Brain capillary pericytes are metabolic sentinels that control blood flow through a K&lt;sub&gt;ATP&lt;/sub&gt; channel-dependent energy switch.

Journal: Cell reports

Status: code on request

[40078] doi:10.1016/j.celrep.2022.111894 [paper]

UCP2-dependent redox sensing in POMC neurons regulates feeding.

Journal: Cell reports

Status: code on request

[40079] doi:10.1016/j.isci.2022.105684 [paper]

Glial regulators of ions and solutes required for specific chemosensory functions in <i>Caenorhabditis elegans</i>.

Journal: iScience

Status: code on request

[40080] doi:10.1016/j.isci.2022.105700 [paper]

Regional specialization of the tongue revealed by gustatory ganglion imaging.

Journal: iScience

Status: code on request

[40081] doi:10.1016/j.isci.2022.105704 [paper, data]

<i>baz1b</i> loss-of-function in zebrafish produces phenotypic alterations consistent with the domestication syndrome.

Journal: iScience

Status: data only, 1 dataset cited

[40082] doi:10.1016/j.neuroimage.2022.119779 [paper, repository]

Amplitudes of resting-state functional networks - investigation into their correlates and biophysical properties.

Journal: NeuroImage

Authors' code: git.fmrib.ox.ac.uk/falmagro/uk_biobank_pipeline_v_1 (no license), benecia2sj/networkamp (no license)

Status: code found, still to be checked

[40083] doi:10.1016/j.neuron.2022.12.005 [paper]

Endothelial PlexinD1 signaling instructs spinal cord vascularization and motor neuron development.

Journal: Neuron

Status: code on request

[40084] doi:10.1016/j.ynirp.2022.100126 [paper, repository]

Tract-specific differences in white matter microstructure between young adult &lt;i&gt;APOE&lt;/i&gt; ε4 carriers and non-carriers: A replication and extension study.

Journal: Neuroimage. Reports

Authors' code: OSF f6jp3 (no license)

Status: code verified, 6 files readable, 1 match

[40085] doi:10.1016/j.ynirp.2022.100136 [paper, repository]

Validation of cross-sectional and longitudinal ComBat harmonization methods for magnetic resonance imaging data on a travelling subject cohort.

Journal: Neuroimage. Reports

Authors' code: Jfortin1/neuroCombat_Rpackage (no license), DrSophieRichter/Validate_ComBat (MIT)

Status: code verified, 25 files readable, 2 matches

[40086] doi:10.1038/s41398-022-02266-5 [paper, data]

The metabolic regulator USF-1 is involved in the control of affective behaviour in mice.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[40087] doi:10.1038/s41434-022-00375-w [paper, data]

In vivo genome editing using novel AAV-PHP variants rescues motor function deficits and extends survival in a SOD1-ALS mouse model.

Journal: Gene therapy

Status: data only, 1 dataset cited

[40088] doi:10.1038/s41467-022-34805-5 [paper, repository]

Visual motion perception as online hierarchical inference.

Journal: Nature communications

Authors' code: DrugowitschLab/structure-in-motion (BSD-3-Clause), Zenodo 7152982 (other-open)

Status: code verified, 128 files readable, 27 matches

[40089] doi:10.1038/s41467-022-35197-2 [paper, repository]

An integrated resource for functional and structural connectivity of the marmoset brain.

Journal: Nature communications

Authors' code: marmosetbrainmapping.org/data.html (no license)

Status: code found, still to be checked

[40090] doi:10.1038/s41592-022-01681-2 [paper, repository]

TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models.

Journal: Nature methods

Authors' code: templateflow (no license), codeocean:1580121 (no license)

Status: code verified

[40091] doi:10.1038/s41598-022-24871-6 [paper, repository]

Photons guided by axons may enable backpropagation-based learning in the brain.

Journal: Scientific reports

Authors' code: pzarkeshian/Photonic-backprop (no license)

Status: code verified, 4 files readable

[40092] doi:10.1038/s41598-022-24899-8 [paper, data]

Brain computer interface to distinguish between self and other related errors in human agent collaboration.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40093] doi:10.1038/s42003-022-04269-w [paper, data]

DNA methylation and hydroxymethylation characterize the identity of D1 and D2 striatal projection neurons.

Journal: Communications biology

Status: data only, 1 dataset cited

[40094] doi:10.1073/pnas.2209884119 [paper, data]

Transcriptional control of cone photoreceptor diversity by a thyroid hormone receptor.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40095] doi:10.1080/07853890.2022.2138530 [paper, data]

Profiling non-coding RNA expression in cerebrospinal fluid of amyotrophic lateral sclerosis patients.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[40096] doi:10.1080/0886022x.2022.2141646 [paper, data]

Dynamic changes of neutrophil-to-lymphocyte ratio in brain-dead donors and delayed graft function in kidney transplant recipients.

Journal: Renal failure

Status: data only, 1 dataset cited

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