Every paper, by date: page 180

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 180 of 200: 1 December 2022 to 23 November 2022.

Thursday, 1 December 2022 (90 papers, 61 on this page)

[40097] doi:10.1080/10717544.2022.2064564 [paper, data]

Preparation of baicalin-loaded ligand-modified nanoparticles for nose-to-brain delivery for neuroprotection in cerebral ischemia.

Journal: Drug delivery

Status: data only, 1 dataset cited

[40098] doi:10.1080/13880209.2022.2131839 [paper, data]

Bazi Bushen capsule attenuates cognitive deficits by inhibiting microglia activation and cellular senescence.

Journal: Pharmaceutical biology

Status: data only, 4 datasets cited

[40099] doi:10.1080/19336896.2022.2095186 [paper, data]

Transcriptomic analysis identifies novel potential biomarkers and highlights cilium-related biological processes in the early stages of prion disease in mice.

Journal: Prion

Status: data only, 1 dataset cited

[40100] doi:10.1080/19336934.2021.1976033 [paper, data]

Spatiotemporal changes in microtubule dynamics during dendritic morphogenesis.

Journal: Fly

Status: data only, 1 dataset cited

[40101] doi:10.1080/19336934.2022.2087484 [paper, data]

Studies of neurodegenerative diseases using <i>Drosophila</i> and the development of novel approaches for their analysis.

Journal: Fly

Status: data only, 1 dataset cited

[40102] doi:10.1080/22221751.2021.2024095 [paper, data]

Direct neuronal infection of SARS-CoV-2 reveals cellular and molecular pathology of chemosensory impairment of COVID-19 patients.

Journal: Emerging microbes & infections

Status: data only, 2 datasets cited

[40103] doi:10.1080/22221751.2022.2081619 [paper, data]

Comparative miRNA transcriptomics of macaques and mice reveals <i>MYOC</i> is an inhibitor for <i>Cryptococcus neoformans</i> invasion into the brain.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

[40104] doi:10.1080/22221751.2022.2098831 [paper, data]

Human Borna disease virus 1 encephalitis shows marked pro-inflammatory biomarker and tissue immunoactivation during the course of disease.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

[40105] doi:10.1080/22221751.2022.2119166 [paper, data]

A mouse-adapted CVA6 strain exhibits neurotropism and triggers systemic manifestations in a novel murine model.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

[40106] doi:10.1080/22221751.2022.2122584 [paper, data]

Clinical features of the first critical case of acute encephalitis caused by the avian influenza A (H5N6) virus.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

[40107] doi:10.1093/brain/awac008 [paper, data]

Association between ultrasonography foetal anomalies and autism spectrum disorder.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[40108] doi:10.1093/brain/awac232 [paper, data]

Lymphotoxin-alpha expression in the meninges causes lymphoid tissue formation and neurodegeneration.

Journal: Brain : a journal of neurology

Status: data only, 2 datasets cited

[40109] doi:10.1093/brain/awac263 [paper, data]

Dual-site transcranial direct current stimulation to treat tinnitus: a randomized controlled trial.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[40110] doi:10.1093/brain/awac313 [paper, data]

DJ-1 is an essential downstream mediator in PINK1/parkin-dependent mitophagy.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[40111] doi:10.1093/cercor/bhac034 [paper, repository]

Spatiotemporal target selection for intracranial neural decoding of abstract and concrete semantics.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: kskngt/sematic-decoding (no license)

Status: code verified, 3 files readable, 3 matches

[40112] doi:10.1093/cercor/bhac062 [paper, repository]

Control over sampling boosts numerical evidence processing in human decisions from experience.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 3354368 (BSD-3-Clause), Zenodo 5929222 (MIT), sappelhoff/sp_experiment (BSD-3-Clause), Zenodo 6363608 (BSD-3-Clause), sappelhoff/sp_code (MIT), Zenodo 6363607 (MIT)

Status: code verified, 126 files readable, 11 matches

[40113] doi:10.1093/cercor/bhac067 [paper]

Evolution of cross-frequency coupling between endogenous oscillations over the temporal cortex in very premature neonates.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[40114] doi:10.1093/cercor/bhac073 [paper, data]

Altered activation in the action observation system during synchronization in high loneliness individuals.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[40115] doi:10.1093/cercor/bhac077 [paper, repository]

Examining the neural correlates of error awareness in a large fMRI study.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF hrba7 (no license)

Status: code verified, 1 file readable, 3 matches

[40116] doi:10.1093/gigascience/giac099 [paper, repository]

annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.

Journal: GigaScience

Authors' code: TransDecoder/TransDecoder (BSD-3-Clause), cfarkas/annotate_my_genomes (MIT), enormandeau/gawn (no license), deeptools/pyGenomeTracks (GPL-3.0)

Status: code verified, 171 files readable, 6 matches

[40117] doi:10.1093/gigascience/giad029 [paper, repository]

On the benefits of self-taught learning for brain decoding.

Journal: GigaScience

Authors' code: swh:/browse/origin/directory/ (no license), gitlab.inria.fr/egermani/self_taught_decoding (MIT), Zenodo 7566172 (CC0-1.0)

Status: code verified, 21 files readable, 6 matches

[40118] doi:10.1093/gigascience/giad035 [paper, repository]

FriendlyClearMap: an optimized toolkit for mouse brain mapping and analysis.

Journal: GigaScience

Authors' code: ccf-streamlines.readthedocs.io (no license), MoritzNegwer/FriendlyClearMap-scripts (GPL-3.0)

Status: code verified, 903 files readable, 17 matches

[40119] doi:10.1093/gigascience/giad049 [paper, repository]

Data management strategy for a collaborative research center.

Journal: GigaScience

Authors' code: Zenodo 4410128 (CC0-1.0), Zenodo 6917120 (CC-BY-4.0)

Status: code verified

[40120] doi:10.1093/gigascience/giad098 [paper, repository]

Imputation method for single-cell RNA-seq data using neural topic model.

Journal: GigaScience

Authors' code: qiyueyang-7/scNTImpute (MIT)

Status: code verified, 22 files readable, 2 matches

[40121] doi:10.1093/jnen/nlac100 [paper, repository]

A multiscale tissue assessment in a rat model of mild traumatic brain injury.

Journal: Journal of neuropathology and experimental neurology

Authors' code: aAbdz/cell_counter (MIT)

Status: code verified, 2 files readable

[40122] doi:10.1093/nar/gkac1134 [paper, repository]

CHD8 suppression impacts on histone H3 lysine 36 trimethylation and alters RNA alternative splicing.

Journal: Nucleic acids research

Authors' code: comprna/suppa (MIT)

Status: code verified, 27 files readable, 1 match

[40123] doi:10.1093/nar/gkac901 [paper, repository]

DeepST: identifying spatial domains in spatial transcriptomics by deep learning.

Journal: Nucleic acids research

Authors' code: JiangBioLab/DeepST (MIT), scverse/squidpy (BSD-3-Clause), BGIResearch/stereopy (MIT)

Status: code verified, 171 files readable, 16 matches

[40124] doi:10.1093/neuonc/noac107 [paper, data]

Decitabine increases neoantigen and cancer testis antigen expression to enhance T-cell-mediated toxicity against glioblastoma.

Journal: Neuro-oncology

Status: data only, 7 datasets cited

[40125] doi:10.1093/neuonc/noac143 [paper, data]

Comparative single-cell RNA-sequencing profiling of BMP4-treated primary glioma cultures reveals therapeutic markers.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[40126] doi:10.1093/scan/nsac033 [paper, repository]

Contributions of fundamental frequency and timbre to vocal emotion perception and their electrophysiological correlates.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF sybrd (no license)

Status: code verified, 11 files readable, 2 matches

[40127] doi:10.1093/scan/nsac036 [paper, repository]

Patterns of brain activity associated with nostalgia: a social-cognitive neuroscience perspective.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF u5rjb (no license)

Status: code verified

[40128] doi:10.1093/stmcls/sxac069 [paper, data]

Deciphering the Transcriptional Landscape of Human Pluripotent Stem Cell-Derived GnRH Neurons: The Role of Wnt Signaling in Patterning the Neural Fate.

Journal: Stem cells (Dayton, Ohio)

Status: data only, 1 dataset cited

[40129] doi:10.1097/md.0000000000032100 [paper, data]

Bioinformatics and systems biology approaches to identify the effects of COVID-19 on neurodegenerative diseases: A review.

Journal: Medicine

Status: data only, 1 dataset cited

[40130] doi:10.1136/jitc-2022-005293 [paper, data]

Impact of CD4 T cells on intratumoral CD8 T-cell exhaustion and responsiveness to PD-1 blockade therapy in mouse brain tumors.

Journal: Journal for immunotherapy of cancer

Status: data only, 1 dataset cited

[40131] doi:10.1158/0008-5472.can-22-2108 [paper]

Dormant SOX9-Positive Cells Facilitate MYC-Driven Recurrence of Medulloblastoma.

Journal: Cancer research

Status: data only

[40132] doi:10.1158/2159-8290.cd-22-0196 [paper, repository]

Natural Coevolution of Tumor and Immunoenvironment in Glioblastoma.

Journal: Cancer discovery

Authors' code: woolingxiang/NES (MIT)

Status: code verified, 3 files readable

[40133] doi:10.1158/2159-8290.cd-22-0837 [paper, data]

Trastuzumab Deruxtecan in HER2-Positive Metastatic Breast Cancer Patients with Brain Metastases: A DESTINY-Breast01 Subgroup Analysis.

Journal: Cancer discovery

Status: data only, 3 datasets cited

[40134] doi:10.1158/2767-9764.crc-22-0388 [paper, repository]

Reprogramming the Canine Glioma Microenvironment with Tumor Vaccination plus Oral Losartan and Propranolol Induces Objective Responses.

Journal: Cancer research communications

Authors' code: dyammons/CanineGliomaManuscript (MIT), Zenodo 7381224 (other-open)

Status: code verified, 6 files readable, 2 matches

[40135] doi:10.1159/000527791 [paper, data]

Potential Embolic Sources in Embolic Stroke of Undetermined Source Patients with Patent Foramen Ovale.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[40136] doi:10.1186/s12993-022-00202-7 [paper, repository]

Children's inhibition skills are associated with their P3a latency-results from an exploratory study.

Journal: Behavioral and brain functions : BBF

Authors' code: widmann/firfilt (no license)

Status: code verified, 24 files readable, 1 match

[40137] doi:10.12998/wjcc.v10.i35.12920 [paper]

Efficacy evaluation of neuroendoscopy <i>vs</i> burr hole drainage in the treatment of chronic subdural hematoma: An observational study.

Journal: World journal of clinical cases

Status: code on request

[40138] doi:10.1371/journal.pbio.3000221 [paper, repository]

ERK1/2 signalling dynamics promote neural differentiation by regulating chromatin accessibility and the polycomb repressive complex.

Journal: PLoS biology

Authors' code: luslab/briscoe-nf-tobias (no license), Zenodo 3966161 (other-open), nf-core/chipseq (MIT)

Status: code verified, 28 files readable, 2 matches

[40139] doi:10.1371/journal.pcbi.1010094 [paper, repository]

Interneuronal network model of theta-nested fast oscillations predicts differential effects of heterogeneity, gap junctions and short term depression for hyperpolarizing versus shunting inhibition.

Journal: PLoS computational biology

Authors' code: modeldb:267338 (no license)

Status: code found, still to be checked

[40140] doi:10.1371/journal.pone.0277573 [paper, data]

Artificial intelligence for localization of the acute ischemic stroke by non-contrast computed tomography.

Journal: PloS one

Status: data only, 2 datasets cited

[40141] doi:10.1371/journal.pone.0277663 [paper, repository]

Effects of subjective and objective task difficulties for feedback- related brain potentials in social situations: An electroencephalogram study.

Journal: PloS one

Authors' code: supp:PMC9714923/pone.0277663.s001.zip (no license), supp:PMC9714923/pone.0277663.s002.R (no license)

Status: code verified, 5 files readable, 2 matches

[40142] doi:10.1371/journal.pone.0277801 [paper, data]

Cocktail party training induces increased speech intelligibility and decreased cortical activity in bilateral inferior frontal gyri. A functional near-infrared study.

Journal: PloS one

Status: data only, 1 dataset cited

[40143] doi:10.1371/journal.pone.0278412 [paper, data]

Gamma frequency sensory stimulation in mild probable Alzheimer's dementia patients: Results of feasibility and pilot studies.

Journal: PloS one

Status: data only, 1 dataset cited

[40144] doi:10.1371/journal.pone.0278415 [paper, repository]

Tai Chi increases functional connectivity and decreases chronic fatigue syndrome: A pilot intervention study with machine learning and fMRI analysis.

Journal: PloS one

Authors' code: Clancy-wu/TaiChi-CFS-2022 (no license)

Status: code verified, 2 files readable

[40145] doi:10.18699/vjgb-22-92 [paper, repository]

Validation of a face image assessment technology to study the dynamics of human functional states in the EEG resting-state paradigm.

Journal: Vavilovskii zhurnal genetiki i selektsii

Authors' code: TadasBaltrusaitis (no license)

Status: code verified

[40146] doi:10.20517/evcna.2022.22 [paper, repository]

Brain endothelium-derived extracellular vesicles containing amyloid-beta induce mitochondrial alterations in neural progenitor cells.

Journal: Extracellular vesicles and circulating nucleic acids

Authors' code: ome/bioformats (GPL-2.0)

Status: code verified, 702 files readable

[40147] doi:10.2217/epi-2022-0353 [paper, data]

Opioid medication use and blood DNA methylation: epigenome-wide association meta-analysis.

Journal: Epigenomics

Status: data only, 2 datasets cited

[40148] doi:10.3389/fnins.2022.1061867 [paper]

Tackling the challenges of group network inference from intracranial EEG data.

Journal: Frontiers in neuroscience

Status: code on request

[40149] doi:10.3389/fnsys.2022.975989 [paper, repository]

Dimensionality reduction and recurrence analysis reveal hidden structures of striatal pathological states.

Journal: Frontiers in systems neuroscience

Authors' code: MiguelSerranoReyes/neuronal-ensembles (no license), lmcinnes/umap (BSD-3-Clause)

Status: code verified, 90 files readable, 5 matches

[40150] doi:10.3389/fpubh.2022.959667 [paper, repository]

Efficient framework for brain tumor detection using different deep learning techniques.

Journal: Frontiers in public health

Authors' code: kaggle.com/ahmedhamada0/brain-tumor-detection (no license), kaggle.com/navoneel/brain-mri-images-for-brain-tumor-detection (no license)

Status: dead link

[40151] doi:10.3390/ijms232315064 [paper, repository]

Microbe-Immune-Stress Interactions Impact Behaviour during Postnatal Development.

Journal: International journal of molecular sciences

Authors' code: braininstitute.ca/research-data-sharing/brain-code (no license)

Status: code verified

[40152] doi:10.3390/nu14235102 [paper, data]

Extra-Virgin Olive Oil Enhances the Blood-Brain Barrier Function in Mild Cognitive Impairment: A Randomized Controlled Trial.

Journal: Nutrients

Status: data only, 3 datasets cited

[40153] doi:10.4103/1673-5374.339476 [paper, data]

Unfolded p53 in non-neuronal cells supports bacterial etiology of Alzheimer's disease.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[40154] doi:10.4103/1673-5374.339494 [paper, data]

Acetyl-11-keto-beta-boswellic acid promotes sciatic nerve repair after injury: molecular mechanism.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[40155] doi:10.7554/elife.77875 [paper, repository]

The evolution and biological correlates of hand preferences in anthropoid primates.

Journal: eLife

Authors' code: doi:10.5061/dryad.8sf7m0crv (no license), fpallasdies/casparetal2022primatehandpreference (no license)

Status: code verified, 3 files readable, 1 match

[40156] doi:10.7554/elife.78395 [paper, repository]

Human hippocampal responses to network intracranial stimulation vary with theta phase.

Journal: eLife

Authors' code: Zenodo 6342237 (CC-BY-4.0)

Status: code verified, 18 files readable, 4 matches

[40157] doi:10.7554/elife.83883 [paper, data]

Urotensin II-related peptides, Urp1 and Urp2, control zebrafish spine morphology.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 30 November 2022 (39 papers)

[40158] doi:10.1007/s00702-022-02570-w [paper, data]

Embryonic mouse medial neocortex as a model system for studying the radial glial scaffold in fetal human neocortex.

Journal: Journal of neural transmission (Vienna, Austria : 1996)

Status: data only, 1 dataset cited

[40159] doi:10.1007/s11571-022-09910-2 [paper]

Temporal spectral evolution of pre-stimulus brain activity in visual and visuomotor tasks.

Journal: Cognitive neurodynamics

Status: code on request

[40160] doi:10.1016/j.cub.2022.11.016 [paper, repository]

Visual category representations in the infant brain.

Journal: Current biology : CB

Authors' code: siyingxie/VCR_infant (BSD-3-Clause)

Status: code verified, 23 files readable, 9 matches

[40161] doi:10.1016/j.dcn.2022.101184 [paper, repository]

Coupling between prefrontal brain activity and respiratory sinus arrhythmia in infants and adults.

Journal: Developmental cognitive neuroscience

Authors' code: OSF sr6hf (no license)

Status: code verified, 35 files readable, 4 matches

[40162] doi:10.1016/j.isci.2022.105685 [paper, repository]

Neonatal exposures to sevoflurane in rhesus monkeys alter synaptic ultrastructure in later life.

Journal: iScience

Authors' code: Zenodo 7272343 (other-open)

Status: code verified, 1 file readable, 4 matches

[40163] doi:10.1016/j.neuroimage.2022.119778 [paper, repository]

Concurrent contextual and time-distant mnemonic information co-exist as feedback in the human visual cortex.

Journal: NeuroImage

Authors' code: ortiztud/feedbes (no license)

Status: code verified, 87 files readable, 8 matches

[40164] doi:10.1038/s41380-022-01882-3 [paper, data]

Structural deficits in key domains of Shank2 lead to alterations in postsynaptic nanoclusters and to a neurodevelopmental disorder in humans.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[40165] doi:10.1038/s41467-022-34824-2 [paper, repository]

Spatially resolved proteomics via tissue expansion.

Journal: Nature communications

Authors' code: Zenodo 7266442 (other-open), lilulu777/ProteomEx (BSD-2-Clause)

Status: code verified, 119 files readable, 1 match

[40166] doi:10.1038/s41467-022-35026-6 [paper, data]

Structures of the R-type human Ca&lt;sub&gt;v&lt;/sub&gt;2.3 channel reveal conformational crosstalk of the intracellular segments.

Journal: Nature communications

Status: data only, 3 datasets cited

[40167] doi:10.1038/s41467-022-35166-9 [paper, repository]

Deciphering the heterogeneity of the Lyve1⁺ perivascular macrophages in the mouse brain.

Journal: Nature communications

Authors' code: JulieBvs/SPlab_PVM2 (no license)

Status: code verified, 103 files readable, 4 matches

[40168] doi:10.1038/s41467-022-35198-1 [paper, repository]

Cell type diversity in a developing octopus brain.

Journal: Nature communications

Authors' code: rajewsky-lab/octopus_micrornas (BSD-3-Clause), SeuntjensLab/Styfhals_2022 (no license), Zenodo 7317825 (other-open)

Status: code verified, 33 files readable, 15 matches

[40169] doi:10.1038/s41525-022-00341-w [paper, data]

Using coding and non-coding rare variants to target candidate genes in patients with severe tinnitus.

Journal: NPJ genomic medicine

Status: data only, 1 dataset cited

[40170] doi:10.1038/s41586-022-05484-5 [paper, repository]

Social trauma engages lateral septum circuitry to occlude social reward.

Journal: Nature

Authors' code: nyclong/2021-07-11642-Nature (no license)

Status: code verified, 6 files readable

[40171] doi:10.1038/s41586-022-05485-4 [paper, repository]

Dopamine promotes head direction plasticity during orienting movements.

Journal: Nature

Authors' code: Zenodo 8056588 (CC-BY-4.0)

Status: code verified, 261 files readable, 27 matches

[40172] doi:10.1038/s41586-022-05491-6 [paper, repository]

PLD3 affects axonal spheroids and network defects in Alzheimer's disease.

Journal: Nature

Authors' code: PaulYJ/Axon-spheroid (no license), modeldb:187612 (no license)

Status: code verified, 20 files readable

[40173] doi:10.1038/s41598-022-24417-w [paper, repository]

Decoding the cognitive states of attention and distraction in a real-life setting using EEG.

Journal: Scientific reports

Authors' code: unishare.nl/index.php/s (no license), kaushik-pallavi/scripts_monks (no license)

Status: code verified, 2 files readable, 3 matches

[40174] doi:10.1098/rsos.220890 [paper, repository]

Blunt head impact causes a temperature rise in the brain.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6303825 (no license)

Status: code found, still to be checked

[40175] doi:10.1113/jp283880 [paper]

Tonic extracellular glutamate and ischaemia: glutamate antiporter system x_c ^- regulates anoxic depolarization in hippocampus.

Journal: The Journal of physiology

Status: code on request

[40176] doi:10.1126/sciadv.abn9494 [paper, data]

The long noncoding RNA FEDORA is a cell type- and sex-specific regulator of depression.

Journal: Science advances

Status: data only, 1 dataset cited

[40177] doi:10.1126/sciadv.abq3745 [paper, repository]

<i>DeepVelo</i>: Single-cell transcriptomic deep velocity field learning with neural ordinary differential equations.

Journal: Science advances

Authors' code: aicb-ZhangLabs/deepvelo (no license)

Status: code verified, 4 files readable, 3 matches

[40178] doi:10.1126/sciadv.add4136 [paper, data]

Decreasing &lt;i&gt;Wapl&lt;/i&gt; dosage partially corrects embryonic growth and brain transcriptome phenotypes in &lt;i&gt;Nipbl&lt;sup&gt;+/-&lt;/sup&gt;&lt;/i&gt; embryos.

Journal: Science advances

Status: data only, 1 dataset cited

[40179] doi:10.1186/s12864-022-09016-3 [paper, data]

Gene expression profile for different susceptibilities to sound stimulation: a comparative study on brainstems between two inbred laboratory mouse strains.

Journal: BMC genomics

Status: data only, 1 dataset cited

[40180] doi:10.1186/s12868-022-00751-7 [paper, repository]

CaPTure: Calcium PeakToolbox for analysis of in vitro calcium imaging data.

Journal: BMC neuroscience

Authors' code: LieberInstitute/CaImg_cellcultures (GPL-3.0), LieberInstitute/CaPTure (GPL-3.0)

Status: code verified, 64 files readable, 4 matches

[40181] doi:10.1186/s13073-022-01136-5 [paper, data]

Cell type-specific changes identified by single-cell transcriptomics in Alzheimer's disease.

Journal: Genome medicine

Status: data only, 9 datasets cited

[40182] doi:10.1186/s40478-022-01452-2 [paper, repository]

Somatic copy number variant load in neurons of healthy controls and Alzheimer's disease patients.

Journal: Acta neuropathologica communications

Authors' code: zgturan/brain_CN (no license)

Status: code verified, 65 files readable, 10 matches

[40183] doi:10.1371/journal.pone.0278259 [paper, repository]

Age matters: Microbiome depletion prior to repeat mild traumatic brain injury differentially alters microbial composition and function in adolescent and adult rats.

Journal: PloS one

Authors' code: respiratory-immunology-lab/metabolome-lipidome-MSDIAL (MIT)

Status: code verified, 20 files readable, 1 match

[40184] doi:10.18632/aging.204397 [paper, repository]

White matter hyperintensity load is associated with premature brain aging.

Journal: Aging

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[40185] doi:10.26508/lsa.202201724 [paper, data]

A cryo-electron microscopic approach to elucidate protein structures from human brain microsomes.

Journal: Life science alliance

Status: data only, 11 datasets cited

[40186] doi:10.3389/fdgth.2022.1025086 [paper, repository]

Workflow for health-related and brain data lifecycle.

Journal: Frontiers in digital health

Authors' code: g-node/nix (BSD-3-Clause)

Status: code verified, 124 files readable

[40187] doi:10.3389/fimmu.2022.980378 [paper, data]

SLC11A1 as a stratification indicator for immunotherapy or chemotherapy in patients with glioma.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[40188] doi:10.3389/fmolb.2022.865788 [paper]

Intestinal flora induces depression by mediating the dysregulation of cerebral cortex gene expression and regulating the metabolism of stroke patients.

Journal: Frontiers in molecular biosciences

Status: data only

[40189] doi:10.3389/fnins.2022.1074706 [paper, data]

An improved anchor-free SAR ship detection algorithm based on brain-inspired attention mechanism.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[40190] doi:10.3389/fnmol.2022.1069122 [paper, data]

Cystatin B deficiency results in sustained histone H3 tail cleavage in postnatal mouse brain mediated by increased chromatin-associated cathepsin L activity.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[40191] doi:10.3389/fphar.2022.963327 [paper, data]

The effects of bioactive components from the rhizome of <i>gastrodia elata blume</i> (Tianma) on the characteristics of Parkinson's disease.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[40192] doi:10.3389/fradi.2022.1039160 [paper, repository]

Adversarial counterfactual augmentation: application in Alzheimer's disease classification.

Journal: Frontiers in radiology

Authors' code: xiat0616/BrainAgeing (no license), iitzco/deepbrain (MIT)

Status: code verified, 54 files readable, 2 matches

[40193] doi:10.3390/ijms232314993 [paper, data]

Irrespective of Plaque Activity, Multiple Sclerosis Brain Periplaques Exhibit Alterations of Myelin Genes and a TGF-Beta Signature.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40194] doi:10.3758/s13415-022-01046-4 [paper, repository]

Motivated for near impossibility: How task type and reward modulate task enjoyment and the striatal activation for extremely difficult task.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: stefaniemeliss/DME (no license)

Status: code verified, 60 files readable, 3 matches

[40195] doi:10.7554/elife.75148 [paper, data]

Thymic macrophages consist of two populations with distinct localization and origin.

Journal: eLife

Status: data only, 1 dataset cited

[40196] doi:10.7554/elife.78109 [paper, repository]

Oscillations support short latency co-firing of neurons during human episodic memory formation.

Journal: eLife

Authors' code: OSF fngz8 (no license)

Status: code verified, 57 files readable, 18 matches

Tuesday, 29 November 2022 (26 papers)

[40197] doi:10.1007/s10489-022-04288-4 [paper, repository]

Semi-supervised adversarial discriminative domain adaptation.

Journal: Applied intelligence (Dordrecht, Netherlands)

Authors' code: NguyenThaiVu/SADDA (no license)

Status: code verified, 2 files readable, 4 matches

[40198] doi:10.1016/j.dib.2022.108788 [paper, data]

A functional neuroimaging dataset acquired during naturalistic movie watching and narrated recall of a series of short cinematic films.

Journal: Data in brief

Status: data only, 3 datasets cited

[40199] doi:10.1016/j.xpro.2022.101822 [paper]

Fluorescent pulse-chase labeling to monitor long-term mitochondrial degradation in primary hippocampal neurons.

Journal: STAR protocols

Status: code on request

[40200] doi:10.1038/s41467-022-35017-7 [paper, repository]

Genetically personalised organ-specific metabolic models in health and disease.

Journal: Nature communications

Authors' code: cfoguet/cobrafunctions (MIT), Zenodo 7277058 (other-open), Zenodo 5992296 (other-open), sysbiochalmers/human-gem (CC-BY-4.0)

Status: code verified, 261 files readable, 14 matches

[40201] doi:10.1038/s41467-022-35028-4 [paper, repository]

Chronic stress causes striatal disinhibition mediated by SOM-interneurons in male mice.

Journal: Nature communications

Authors' code: LINCellularNeuroscience/VAME (GPL-3.0)

Status: code verified, 29 files readable, 1 match

[40202] doi:10.1038/s41467-022-35117-4 [paper, repository]

Human visual consciousness involves large scale cortical and subcortical networks independent of task report and eye movement activity.

Journal: Nature communications

Authors' code: fil.ion.ucl.ac.uk/spm/software (no license), bmvp.projects.nitrc.org (no license)

Status: code verified

[40203] doi:10.1038/s41525-022-00339-4 [paper]

Brain single cell transcriptomic profiles in episodic memory phenotypes associated with temporal lobe epilepsy.

Journal: NPJ genomic medicine

Status: code on request

[40204] doi:10.1038/s41593-022-01201-7 [paper, repository]

Hippocampal representations of foraging trajectories depend upon spatial context.

Journal: Nature neuroscience

Authors' code: dudmanlab.org/html/resources.html (no license), tinyurl.com/wanchen2022 (no license), dudmanj/tML (MIT), dudmanlab.org (no license)

Status: code verified, 9 files readable, 1 match

[40205] doi:10.1038/s41598-022-24934-8 [paper, repository]

Low intensity repetitive transcranial magnetic stimulation modulates brain-wide functional connectivity to promote anti-correlated c-Fos expression.

Journal: Scientific reports

Authors' code: dterstege/publicationrepo (no license)

Status: code verified, 15 files readable, 6 matches

[40206] doi:10.1038/s42003-022-04261-4 [paper, repository]

Temperature-robust rapid eye movement and slow wave sleep in the lizard Laudakia vulgaris.

Journal: Communications biology

Authors' code: EvolutionaryNeuralCodingLab/Temperature-robust-REM-and-SWS-in-Laudakia-vulgaris (no license)

Status: code verified, 12 files readable, 8 matches

[40207] doi:10.1073/pnas.2209078119 [paper, repository]

Neurocomputational evidence that conflicting prosocial motives guide distributive justice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF zd2tg (no license)

Status: code verified, 107 files readable

[40208] doi:10.1073/pnas.2211454119 [paper]

Local production of corticotropin-releasing hormone in prefrontal cortex modulates male-specific novelty exploration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only

[40209] doi:10.1080/19768354.2022.2146187 [paper, data]

Blood transcriptome comparison between sexes and their function in 4-week Rhode Island red chickens.

Journal: Animal cells and systems

Status: data only, 1 dataset cited

[40210] doi:10.1155/2022/9579422 [paper, data]

Epileptic Seizure Detection Using a Hybrid 1D CNN-Machine Learning Approach from EEG Data.

Journal: Journal of healthcare engineering

Status: data only, 1 dataset cited

[40211] doi:10.1159/000527432 [paper, data]

Association between Anatomical Variations of the Circle of Willis and Covert Vascular Brain Injury in the General Population.

Journal: Cerebrovascular diseases (Basel, Switzerland)

Status: data only, 1 dataset cited

[40212] doi:10.1186/s13054-022-04250-3 [paper, repository]

Serum biomarkers identify critically ill traumatic brain injury patients for MRI.

Journal: Critical care (London, England)

Authors' code: DrSophieRichter/MRI_triage (no license)

Status: code verified, 3 files readable, 2 matches

[40213] doi:10.1186/s40478-022-01470-0 [paper, repository]

Methylation differences in Alzheimer's disease neuropathologic change in the aged human brain.

Journal: Acta neuropathologica communications

Authors' code: anna-lena-lang/90plus_brain_methylation (no license), aet21/EpiSCORE (no license)

Status: code verified, 42 files readable, 18 matches

[40214] doi:10.1371/journal.pcbi.1010678 [paper, repository]

Sampling effects and measurement overlap can bias the inference of neuronal avalanches.

Journal: PLoS computational biology

Authors' code: Priesemann-Group/criticalavalanches (GPL-3.0)

Status: code verified, 28 files readable, 9 matches

[40215] doi:10.1371/journal.pone.0278261 [paper, repository]

In vivo chromatic and spatial tuning of foveolar retinal ganglion cells in Macaca fascicularis.

Journal: PloS one

Authors' code: OSF s9qw4 (no license), isetbio/isetbio (MIT), isetbio/ISETMacaque (MIT)

Status: code verified, 1,646 files readable, 30 matches

[40216] doi:10.3389/fnbeh.2022.1025870 [paper, data]

Event-related brain potential markers of visual and auditory perception: A useful tool for brain computer interface systems.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[40217] doi:10.3389/fnins.2022.1086168 [paper, data]

Detection of differentially expressed genes in spatial transcriptomics data by spatial analysis of spatial transcriptomics: A novel method based on spatial statistics.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40218] doi:10.3390/brainsci12121633 [paper, repository]

A Mixed Visual Encoding Model Based on the Larger-Scale Receptive Field for Human Brain Activity.

Journal: Brain sciences

Authors' code: KamitaniLab/GenericObjectDecoding (MIT)

Status: code verified, 91 files readable, 1 match

[40219] doi:10.3390/ijms232314935 [paper, repository]

Upregulated <i>FKBP1A</i> Suppresses Glioblastoma Cell Growth via Apoptosis Pathway.

Journal: International journal of molecular sciences

Authors' code: networkx/networkx (BSD-3-Clause)

Status: code verified, 700 files readable

[40220] doi:10.7554/elife.56257 [paper, repository]

Functional connectivity subtypes associate robustly with ASD diagnosis.

Journal: eLife

Authors' code: surchs/ASD_subtype_code_supplement (CC-BY-4.0)

Status: code verified, 40 files readable, 2 matches

[40221] doi:10.7554/elife.76452 [paper, repository]

Coordinated multiplexing of information about separate objects in visual cortex.

Journal: eLife

Authors' code: supp:PMC9708082/elife-76452-data1.zip (no license)

Status: empty repository

[40222] doi:10.7554/elife.77599 [paper, repository]

Improving the accuracy of single-trial fMRI response estimates using GLMsingle.

Journal: eLife

Authors' code: glmsingle.org (no license), jacob-prince/GLMsingle_paper (BSD-3-Clause)

Status: code verified, 9 files readable

Monday, 28 November 2022 (14 papers)

[40223] doi:10.1002/jnr.25149 [paper, data]

Association of CNR1 gene and cannabinoid 1 receptor protein in the human brain.

Journal: Journal of neuroscience research

Status: data only, 1 dataset cited

[40224] doi:10.1016/j.mex.2022.101942 [paper, data]

Temporal model for central sensitization: A hypothesis for mechanism and treatment using systemic manual therapy, a focused review.

Journal: MethodsX

Status: data only, 3 datasets cited

[40225] doi:10.1038/s41418-022-01089-7 [paper]

SPY1 inhibits neuronal ferroptosis in amyotrophic lateral sclerosis by reducing lipid peroxidation through regulation of GCH1 and TFR1.

Journal: Cell death and differentiation

Status: data only

[40226] doi:10.1038/s41467-022-34867-5 [paper, repository]

SOTIP is a versatile method for microenvironment modeling with spatial omics data.

Journal: Nature communications

Authors' code: CaiGroup/seqFISH-PLUS (no license), yuanzhiyuan/SEAM (no license), TencentAILabHealthcare/SOTIP (no license)

Status: code verified, 35 files readable

[40227] doi:10.1038/s41592-022-01688-9 [paper, repository]

A three-photon head-mounted microscope for imaging all layers of visual cortex in freely moving mice.

Journal: Nature methods

Authors' code: Zenodo 7225012 (lgpl-3.0-or-later)

Status: code verified

[40228] doi:10.1038/s42003-022-04257-0 [paper]

Global dissociation of the posterior amygdala from the rest of the brain during REM sleep.

Journal: Communications biology

Status: code on request

[40229] doi:10.1093/braincomms/fcac313 [paper, data]

Integrated analysis of proteome-wide and transcriptome-wide association studies identified novel genes and chemicals for vertigo.

Journal: Brain communications

Status: data only, 1 dataset cited

[40230] doi:10.1101/2022.11.28.518253 [paper, repository]

Attentional modulation is orthogonal to disinhibition by VIP interneurons in primary visual cortex

Journal: bioRxiv (preprint)

Authors' code: Zenodo 10041197 (CC-BY-4.0), Zenodo 10041198 (CC-BY-4.0)

Status: code verified, 18 files readable

[40231] doi:10.1162/nol_a_00080 [paper, repository]

Event-Related Potential Correlates of Learning to Produce Novel Foreign Phonemes.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF wnd2j (no license)

Status: code verified, 9 files readable, 3 matches

[40232] doi:10.1371/journal.pcbi.1010716 [paper, repository]

The geometry of representational drift in natural and artificial neural networks.

Journal: PLoS computational biology

Authors' code: kaitken17/drift_geometry (BSD-2-Clause)

Status: code verified, 5 files readable, 10 matches

[40233] doi:10.1523/eneuro.0234-21.2022 [paper, repository]

A Model for the Propagation of Seizure Activity in Normal Brain Tissue.

Journal: eNeuro

Authors' code: HumanBrainProject/PropNoProp (GPL-2.0)

Status: code verified, 4 files readable

[40234] doi:10.3389/fnins.2022.909146 [paper, repository]

A cerebellum inspired spiking neural network as a multi-model for pattern classification and robotic trajectory prediction.

Journal: Frontiers in neuroscience

Authors' code: compneuro/DLCISNN (no license)

Status: code verified, 40 files readable, 1 match

[40235] doi:10.3390/epigenomes6040041 [paper, data]

Dynamic 5-Hydroxymethylcytosine Change: Implication for Aging of Non-Human Primate Brain.

Journal: Epigenomes

Status: data only, 1 dataset cited

[40236] doi:10.3390/s22239243 [paper, repository]

A Guided Tutorial on Modelling Human Event-Related Potentials with Recurrent Neural Networks.

Journal: Sensors (Basel, Switzerland)

Authors' code: Ajarn-Jamie/rnn-p3-erp-tutorial (CC-BY-4.0)

Status: code verified, 2 files readable, 9 matches

Sunday, 27 November 2022 (7 papers)

[40237] doi:10.1002/advs.202205191 [paper, data]

Simultaneous Functional Magnetic Resonance and Optoacoustic Imaging of Brain-Wide Sensory Responses in Mice.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 2 datasets cited

[40238] doi:10.1002/hbm.26147 [paper, data]

Multisite test-retest reliability and compatibility of brain metrics derived from FreeSurfer versions 7.1, 6.0, and 5.3.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[40239] doi:10.1002/hbm.26150 [paper, repository]

Assessing the coupling between local neural activity and global connectivity fluctuations: Application to human intracranial electroencephalography during a cognitive task.

Journal: Human brain mapping

Authors' code: mvilavidal/localglobal2022 (GPL-3.0)

Status: code verified, 4 files readable, 2 matches

[40240] doi:10.1007/s10633-022-09911-w [paper]

VEP examination with new portable device.

Journal: Documenta ophthalmologica. Advances in ophthalmology

Status: code on request

[40241] doi:10.1038/s41467-022-34634-6 [paper, repository]

Geometrical congruence, greedy navigability and myopic transfer in complex networks and brain connectomes.

Journal: Nature communications

Authors' code: biomedical-cybernetics/nPSO_model (no license), biomedical-cybernetics/geometrical_congruence (no license), Zenodo 7221662 (other-open)

Status: code verified, 46 files readable, 14 matches

[40242] doi:10.1038/s41598-022-24923-x [paper, data]

Differentiation of action mechanisms between natural and synthetic repellents through neuronal electroantennogram and proteomic in Aedes aegypti (Diptera: Culicidae).

Journal: Scientific reports

Status: data only, 1 dataset cited

[40243] doi:10.1186/s12868-022-00756-2 [paper, data]

NLRP3 inflammasome regulates astrocyte transformation in brain injury induced by chronic intermittent hypoxia.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

Saturday, 26 November 2022 (11 papers)

[40244] doi:10.1016/j.bpsgos.2022.11.003 [paper, repository]

Variability in Cognitive Task Performance in Early Adolescence Is Associated With Stronger Between-Network Anticorrelation and Future Attention Problems.

Journal: Biological psychiatry global open science

Authors' code: OSF 25za6 (no license)

Status: code verified

[40245] doi:10.1016/j.dcn.2022.101181 [paper, data]

Neurodevelopmental oscillatory basis of speech processing in noise.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[40246] doi:10.1016/j.isci.2022.105680 [paper, repository]

Rich dynamics and functional organization on topographically designed neuronal networks <i>in vitro</i>.

Journal: iScience

Authors' code: Zenodo 1119026 (MIT), Zenodo 1119025 (MIT)

Status: code verified, 1,898 files readable, 1 match

[40247] doi:10.1016/j.molmet.2022.101647 [paper, repository]

Insulin and IGF-1 elicit robust transcriptional regulation to modulate autophagy in astrocytes.

Journal: Molecular metabolism

Authors' code: Jerry-Zhao/2022CaiLabInsIgf1 (no license)

Status: code verified, 3 files readable, 1 match

[40248] doi:10.1016/j.redox.2022.102547 [paper, data]

Fatty acid-binding proteins 3 and 5 are involved in the initiation of mitochondrial damage in ischemic neurons.

Journal: Redox biology

Status: data only, 1 dataset cited

[40249] doi:10.1038/s41419-022-05449-6 [paper, data]

Mutual regulation between phosphofructokinase 1 platelet isoform and VEGF promotes glioblastoma tumor growth.

Journal: Cell death & disease

Status: data only, 3 datasets cited

[40250] doi:10.1038/s41467-022-34899-x [paper, data]

Decoding molecular programs in melanoma brain metastases.

Journal: Nature communications

Status: data only, 1 dataset cited

[40251] doi:10.1038/s42003-022-04244-5 [paper, repository]

A cross-cohort replicable and heritable latent dimension linking behaviour to multi-featured brain structure.

Journal: Communications biology

Authors' code: mlnl/cca_pls_toolkit (GPL-3.0), Zenodo 7153571 (other-open)

Status: code verified, 208 files readable

[40252] doi:10.1186/s12940-022-00935-y [paper, data]

Relationship between freshwater harmful algal blooms and neurodegenerative disease incidence rates in South Korea.

Journal: Environmental health : a global access science source

Status: data only, 1 dataset cited

[40253] doi:10.3390/cancers14235826 [paper]

Impact of Blood-Brain Barrier to Delivering a Vascular-Disrupting Agent: Predictive Role of Multiparametric MRI in Rodent Craniofacial Metastasis Models.

Journal: Cancers

Status: code on request

[40254] doi:10.3390/ijms232314811 [paper, repository]

3-Dimensional Immunostaining and Automated Deep-Learning Based Analysis of Nerve Degeneration.

Journal: International journal of molecular sciences

Authors' code: trissim/BlebNet (no license)

Status: code verified, 26 files readable, 4 matches

Friday, 25 November 2022 (20 papers)

[40255] doi:10.1016/j.isci.2022.105671 [paper]

The brain of the North American cheetah-like cat <i>Miracinonyx trumani</i>.

Journal: iScience

Status: code on request

[40256] doi:10.1038/s41380-022-01835-w [paper, data]

Social isolation and the brain: effects and mechanisms.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[40257] doi:10.1038/s41380-022-01877-0 [paper, data]

Cyclin Y regulates spatial learning and memory flexibility through distinct control of the actin pathway.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[40258] doi:10.1038/s41537-022-00302-3 [paper]

Atypical prediction error learning is associated with prodromal symptoms in individuals at clinical high risk for psychosis.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[40259] doi:10.1038/s41597-022-01833-1 [paper, repository]

TractoInferno - A large-scale, open-source, multi-site database for machine learning dMRI tractography.

Journal: Scientific data

Authors' code: scilus/dmriqcpy (MIT), Zenodo 4630660 (CC-BY-4.0), scil-vital/TractoInferno (MIT), scilus/scilpy (MIT)

Status: code verified, 697 files readable, 11 matches

[40260] doi:10.1126/sciadv.add6865 [paper, data]

A broadly tuned network for affective body language in the macaque brain.

Journal: Science advances

Status: data only, 1 dataset cited

[40261] doi:10.1126/sciadv.add9938 [paper, repository]

MicroRNAs are deeply linked to the emergence of the complex octopus brain.

Journal: Science advances

Authors' code: PacificBiosciences/IsoSeq (BSD-3-Clause), rajewsky-lab/FLAMAnalysis (no license), friedlanderlab/mirtrace (no license), rajewsky-lab/octopus_microRNAs (BSD-3-Clause)

Status: code verified, 56 files readable, 3 matches

[40262] doi:10.1126/science.abm7466 [paper, data]

Cortical wiring by synapse type-specific control of local protein synthesis.

Journal: Science (New York, N.Y.)

Status: data only, 1 dataset cited

[40263] doi:10.1186/s12993-022-00200-9 [paper, data]

The Area Prostriata may play a role in technical reasoning.

Journal: Behavioral and brain functions : BBF

Status: data only, 1 dataset cited

[40264] doi:10.3389/fgene.2022.949449 [paper, repository]

Transcriptional mapping of the macaque retina and RPE-choroid reveals conserved inter-tissue transcription drivers and signaling pathways.

Journal: Frontiers in genetics

Authors' code: davemcg/macaque_macula_RNA-seq (no license)

Status: dead link

[40265] doi:10.3389/fncel.2022.1016814 [paper, data]

MicroRNA cerebrospinal fluid profile during the early brain injury period as a biomarker in subarachnoid hemorrhage patients.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[40266] doi:10.3389/fncir.2022.977700 [paper, repository]

Igneous: Distributed dense 3D segmentation meshing, neuron skeletonization, and hierarchical downsampling.

Journal: Frontiers in neural circuits

Authors' code: seung-lab/igneous (GPL-3.0), seung-lab/zmesh (GPL-3.0), google/neuroglancer (Apache-2.0), hsidky/neurogen (MIT), SridharJagannathan/pyroglancer (BSD-3-Clause), janelia-flyem/neutu (other), funkey/skeletopyze (no license), seung-lab/skeletonization (no license), saalfeldlab/n5 (BSD-2-Clause), saalfeldlab/render (GPL-2.0), janelia-flyem/dvid (BSD-3-Clause), jhuapl-boss/ingest-client (Apache-2.0), scalableminds/webknossos-libs (no license), seung-lab/python-task-queue (BSD-3-Clause), seung-lab/cloud-files (BSD-3-Clause), zarr-developers/zarr-python (MIT), dcwatson/deflate (MIT), ebiggers/libdeflate (MIT), seung-lab/pyspng-seunglab (BSD-3-Clause), nurpax/pyspng (BSD-3-Clause), jfolz/simplejpeg (MIT), seung-lab/compressedseg (Apache-2.0), seung-lab/tinybrain (GPL-3.0), zlateski/zi_lib (no license), seung-lab/DracoPy (Apache-2.0), aplbrain/saber (Apache-2.0), JaneliaSciComp/SharkViewer (BSD-3-Clause), saalfeldlab/paintera (GPL-2.0)

Status: code verified, 5,656 files readable, 7 matches

[40267] doi:10.3389/fnins.2022.1067411 [paper, data]

Intermittent hypoxia conditioning as a potential prevention and treatment strategy for ischemic stroke: Current evidence and future directions.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40268] doi:10.3389/fnins.2022.991136 [paper, data]

A time-frequency denoising method for single-channel event-related EEG.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40269] doi:10.3390/biology11121704 [paper, data]

Intrinsic Disorder as a Natural Preservative: High Levels of Intrinsic Disorder in Proteins Found in the 2600-Year-Old Human Brain.

Journal: Biology

Status: data only, 3 datasets cited

[40270] doi:10.3390/brainsci12121617 [paper, repository]

Intermodulation from Unisensory to Multisensory Perception: A Review.

Journal: Brain sciences

Authors' code: xspsych/review_code (no license)

Status: code verified, 7 files readable

[40271] doi:10.3390/cells11233770 [paper, data]

UBA52 Is Crucial in HSP90 Ubiquitylation and Neurodegenerative Signaling during Early Phase of Parkinson's Disease.

Journal: Cells

Status: data only, 1 dataset cited

[40272] doi:10.3390/cells11233778 [paper]

New Insights into Mechanisms of Ferroptosis Associated with Immune Infiltration in Neonatal Hypoxic-Ischemic Brain Damage.

Journal: Cells

Status: data only

[40273] doi:10.3390/e24121725 [paper, repository]

Functional Connectome of the Human Brain with Total Correlation.

Journal: Entropy (Basel, Switzerland)

Authors' code: forms.gle/1dxdpepi7aodq77q7 (no license)

Status: code verified

[40274] doi:10.3390/s22239156 [paper, repository]

Channel Reduction for an EEG-Based Authentication System While Performing Motor Movements.

Journal: Sensors (Basel, Switzerland)

Authors' code: KetolaC/EEG_User_Auth (no license)

Status: code verified, 12 files readable, 12 matches

Thursday, 24 November 2022 (21 papers)

[40275] doi:10.1002/hbm.26148 [paper, repository]

Connectivity between default mode and frontoparietal networks mediates the association between global amyloid-β and episodic memory.

Journal: Human brain mapping

Authors' code: peterzhukovsky/resilience (no license)

Status: code verified, 6 files readable

[40276] doi:10.1002/mrm.29545 [paper, repository]

Optimized flip angle schemes for the split acquisition of fast spin-echo signals (SPLICE) sequence and application to diffusion-weighted imaging.

Journal: Magnetic resonance in medicine

Authors' code: sofierahbek/flip-angle-optimization (no license)

Status: code verified, 9 files readable, 4 matches

[40277] doi:10.1016/j.neuroimage.2022.119768 [paper, repository]

Sample size requirement for achieving multisite harmonization using structural brain MRI features.

Journal: NeuroImage

Authors' code: parekhpravesh/HarmonizationPaper (no license)

Status: code verified, 8 files readable, 2 matches

[40278] doi:10.1016/j.nicl.2022.103275 [paper, repository]

Non-REM sleep in major depressive disorder.

Journal: NeuroImage. Clinical

Authors' code: OSF bdez9 (no license)

Status: code verified, 13 files readable, 4 matches

[40279] doi:10.1038/s41531-022-00423-7 [paper, repository]

Protein aggregation and calcium dysregulation are hallmarks of familial Parkinson's disease in midbrain dopaminergic neurons.

Journal: NPJ Parkinson's disease

Authors' code: strohstern/Transcriptomic_signatures_iPSC_derived_dopamine_neurons (no license), Zenodo 7260558 (other-open), Zenodo 7123756 (other-open), esmb/dbscan_with_gdscsmlm_output (no license)

Status: code verified, 52 files readable, 11 matches

[40280] doi:10.1038/s41597-022-01840-2 [paper, repository]

An fMRI Dataset for Concept Representation with Semantic Feature Annotations.

Journal: Scientific data

Authors' code: CLUEbenchmark/CLUE (no license), Morizeyao/GPT2-Chinese (MIT), google-research/electra (Apache-2.0)

Status: code verified, 367 files readable

[40281] doi:10.1038/s41598-022-24541-7 [paper, repository]

Interpretable brain disease classification and relevance-guided deep learning.

Journal: Scientific reports

Authors' code: neuroimaging.at/explainable-ai (no license)

Status: code verified

[40282] doi:10.1101/2022.11.23.517775 [paper, data]

Dopamine neurons that inform <i>Drosophila</i> olfactory memory have distinct, acute functions driving attraction and aversion

Journal: bioRxiv (preprint)

Status: data only, 5 datasets cited

[40283] doi:10.1111/acer.14952 [paper, data]

Prenatal alcohol exposure exacerbates acute sensorimotor deficits and impedes long-term behavioral recovery from the effects of an adult-onset cerebrovascular ischemic stroke.

Journal: Alcoholism, clinical and experimental research

Status: data only, 1 dataset cited

[40284] doi:10.1186/s12911-022-02050-x [paper, data]

Comparison of classification algorithms for predicting autistic spectrum disorder using WEKA modeler.

Journal: BMC medical informatics and decision making

Status: data only, 1 dataset cited

[40285] doi:10.1186/s12974-022-02645-1 [paper, data]

Hippocampal microRNA-26a-3p deficit contributes to neuroinflammation and behavioral disorders via p38 MAPK signaling pathway in rats.

Journal: Journal of neuroinflammation

Status: data only, 5 datasets cited

[40286] doi:10.1186/s12987-022-00389-x [paper, data]

Transcriptomic analysis of a 3D blood-brain barrier model exposed to disturbed fluid flow.

Journal: Fluids and barriers of the CNS

Status: data only, 2 datasets cited

[40287] doi:10.1186/s13073-022-01133-8 [paper, data]

Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex.

Journal: Genome medicine

Status: data only, 6 datasets cited

[40288] doi:10.1186/s40001-022-00898-3 [paper, data]

Identification of significant modules and hub genes involved in hepatic encephalopathy using WGCNA.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[40289] doi:10.3389/fgene.2022.1038585 [paper, data]

Transcriptome analysis reveals potential marker genes for diagnosis of Alzheimer's disease and vascular dementia.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[40290] doi:10.3389/fncom.2022.988977 [paper, repository]

Active inference, morphogenesis, and computational psychiatry.

Journal: Frontiers in computational neuroscience

Authors' code: LPioL/active_inference_morphopsy (no license)

Status: code verified, 7 files readable

[40291] doi:10.3389/fnmol.2022.1037481 [paper]

White matter abnormalities in the <i>Hdc</i> knockout mouse, a model of tic and OCD pathophysiology.

Journal: Frontiers in molecular neuroscience

Status: data only

[40292] doi:10.3389/fnmol.2022.1078854 [paper, data]

Altered expression of glycobiology-related genes in Parkinson's disease brain.

Journal: Frontiers in molecular neuroscience

Status: data only, 3 datasets cited

[40293] doi:10.3389/fphar.2022.940260 [paper, data]

Bioinformatics analysis and <i>in vivo</i> validation of ferroptosis-related genes in ischemic stroke.

Journal: Frontiers in pharmacology

Status: data only, 3 datasets cited

[40294] doi:10.3389/fpsyt.2022.1049719 [paper, data]

Studying hemispheric lateralization of 4-month-old infants from different language groups through near-infrared spectroscopy-based connectivity.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[40295] doi:10.3390/ijms232314662 [paper, data]

Red Algae “Sarcodia suieae” Acetyl-Xylogalactan Downregulate Heat-Induced Macrophage Stress Factors Ddit3 and Hyou1 Compared to the Aquatic Animal Model of Nile Tilapia (Oreochromis niloticus) Brain Arachidonic Acid Expression

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

Wednesday, 23 November 2022 (33 papers, 25 on this page)

[40296] doi:10.1002/acn3.51707 [paper, data]

A KCNC1-related neurological disorder due to gain of Kv3.1 function.

Journal: Annals of clinical and translational neurology

Status: data only, 14 datasets cited

[40297] doi:10.1007/s00415-022-11493-1 [paper, data]

Smartphone video nystagmography using convolutional neural networks: ConVNG.

Journal: Journal of neurology

Status: code on request, 2 datasets cited

[40298] doi:10.1016/j.isci.2022.105648 [paper]

Microbial-derived metabolites induce actin cytoskeletal rearrangement and protect blood-brain barrier function.

Journal: iScience

Status: code on request

[40299] doi:10.1038/s41467-022-34719-2 [paper, repository]

Differential compartmentalization of myeloid cell phenotypes and responses towards the CNS in Alzheimer's disease.

Journal: Nature communications

Authors' code: HelenaLC/CATALYST (no license)

Status: code verified, 67 files readable, 2 matches

[40300] doi:10.1038/s41467-022-34879-1 [paper, repository]

Spatially aware dimension reduction for spatial transcriptomics.

Journal: Nature communications

Authors' code: almaan/her2st (no license), xzlab.org/software.html (no license), shangll123/SpatialPCA (GNU), lulushang.org/spatialpca_tutorial/index.html (no license), shangll123/SpatialPCA_analysis_codes (GPL-3.0), Zenodo 7178279 (other-open)

Status: code verified, 42 files readable, 18 matches

[40301] doi:10.1038/s41531-022-00420-w [paper]

Motor cortex excitability is reduced during freezing of upper limb movement in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[40302] doi:10.1038/s41586-022-05470-x [paper, repository]

The encoding of touch by somatotopically aligned dorsal column subdivisions.

Journal: Nature

Authors' code: josefturecek/Turecek_Nature_2022 (no license)

Status: code verified, 5 files readable

[40303] doi:10.1038/s41598-022-20096-9 [paper, data]

Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40304] doi:10.1038/s41598-022-22739-3 [paper, repository]

Span of regularization for solution of inverse problems with application to magnetic resonance relaxometry of the brain.

Journal: Scientific reports

Authors' code: Zenodo 5860653 (CC-BY-4.0)

Status: code verified

[40305] doi:10.1038/s41598-022-24369-1 [paper, repository]

DINI: data imputation using neural inversion for edge applications.

Journal: Scientific reports

Authors' code: jha-lab/dini (BSD-3-Clause)

Status: code verified, 27 files readable, 10 matches

[40306] doi:10.1038/s41598-022-24526-6 [paper, data]

Noninvasive stimulation of the ventromedial prefrontal cortex modulates rationality of human decision-making.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40307] doi:10.1073/pnas.2202580119 [paper, repository]

Oligodendrocyte precursor cells ingest axons in the mouse neocortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: microns-explorer.org (no license), seung-lab (no license), seung-lab/AnnotationPipelineOverviewforrepositorylist (no license), sdorkenw/MeshParty (Apache-2.0), nicholasturner1/PyTorchUtils (MIT), nicholasturner1/Synaptor (MIT)

Status: code verified, 228 files readable

[40308] doi:10.1073/pnas.2204341119 [paper, data]

High-performance optical control of GPCR signaling by bistable animal opsins MosOpn3 and LamPP in a molecular property-dependent manner.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40309] doi:10.1073/pnas.2206067119 [paper, repository]

Prospective and retrospective values integrated in frontal cortex drive predictive choice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hamaguchikosuke/HDBCellSCAN (no license), Zenodo 72971475 (no license)

Status: code verified, 100 files readable, 2 matches

[40310] doi:10.1098/rsob.220247 [paper, data]

Cytokinetic diversity in mammalian cells is revealed by the characterization of endogenous anillin, Ect2 and RhoA.

Journal: Open biology

Status: data only, 1 dataset cited

[40311] doi:10.1111/acel.13741 [paper, data]

Neuronal HLH-30/TFEB modulates peripheral mitochondrial fragmentation to improve thermoresistance in Caenorhabditis elegans.

Journal: Aging cell

Status: data only, 1 dataset cited

[40312] doi:10.1126/sciadv.abq6324 [paper, data]

Intronic enhancers of the human <i>SNCA</i> gene predominantly regulate its expression in brain in vivo.

Journal: Science advances

Status: data only, 1 dataset cited

[40313] doi:10.1126/sciadv.add6391 [paper, data]

Expression of expanded GGC repeats within &lt;i&gt;NOTCH2NLC&lt;/i&gt; causes behavioral deficits and neurodegeneration in a mouse model of neuronal intranuclear inclusion disease.

Journal: Science advances

Status: data only, 2 datasets cited

[40314] doi:10.1186/s12915-022-01467-0 [paper, repository]

Folate regulates RNA m⁵C modification and translation in neural stem cells.

Journal: BMC biology

Authors' code: zaustinj33/RNABSseq_FolicAcid (no license)

Status: code verified, 30 files readable, 3 matches

[40315] doi:10.1371/journal.pone.0276995 [paper, data]

Experimental factors that impact CaV1.2 channel pharmacology-Effects of recording temperature, charge carrier, and quantification of drug effects on the step and ramp currents elicited by the "step-step-ramp" voltage protocol.

Journal: PloS one

Status: data only, 1 dataset cited

[40316] doi:10.3389/fbioe.2022.897852 [paper, repository]

Revising the stretch reflex threshold method to measure stretch hyperreflexia in cerebral palsy.

Journal: Frontiers in bioengineering and biotechnology

Authors' code: Pedro-Valadao/EXECP_Neuromechanics (no license)

Status: dead link

[40317] doi:10.3389/fimmu.2022.1027756 [paper, data]

Inflammation and immune cell abnormalities in intracranial aneurysm subarachnoid hemorrhage (SAH): Relevant signaling pathways and therapeutic strategies.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[40318] doi:10.3389/fnagi.2022.1056312 [paper, data]

Discovery and validation of Ferroptosis-related molecular patterns and immune characteristics in Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 3 datasets cited

[40319] doi:10.3389/fneur.2022.1030118 [paper, repository]

Estimated EEG functional connectivity and aperiodic component induced by vagal nerve stimulation in patients with drug-resistant epilepsy.

Journal: Frontiers in neurology

Authors' code: smlacava/Athena (GPL-3.0)

Status: code verified, 264 files readable

[40320] doi:10.3389/fnins.2022.1004027 [paper, data]

The visual basis of reading and reading difficulties.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

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